RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11809
         (240 letters)



>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 93

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 28/73 (38%), Positives = 45/73 (61%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE 
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74

Query: 62 LKGKLDEKKKMGN 74
          +K  LD++K+ G 
Sbjct: 75 IKKYLDQEKEDGK 87


>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B,
          SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 77

 Score = 52.1 bits (125), Expect = 6e-10
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD-QQKIRDKIETYINRAE 60
          A  L  +A + D+ G + E+L  YQ  V   L  V+  +     +Q IR K   Y++RAE
Sbjct: 11 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE 70

Query: 61 VLKGKL 66
           LK  L
Sbjct: 71 KLKEYL 76


>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector
           protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 46

 Score = 25.9 bits (57), Expect = 0.81
 Identities = 9/41 (21%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 135 VKRINLLTTYADRPQHSNKTARVKQ-EENLKQLQESLRKMK 174
           +++I+ +T++  + + + +   V+  +ENL+QLQ+   + +
Sbjct: 5   LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 45


>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 214

 Score = 27.1 bits (59), Expect = 1.9
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 9/118 (7%)

Query: 31  ELLKHVRGLSNKGDQQKIRDKIETYINRAEVL------KGK-LDEKKKMGNYHEQIEIAN 83
            +L++V+  +  GD Q + + I+TY  + E        KG+ +D   +  +    +E+  
Sbjct: 6   RILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGA 65

Query: 84  NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLL 141
                       R L      + +     +                    N    +L+
Sbjct: 66  Y--CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI 121


>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 170

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 14/128 (10%), Positives = 38/128 (29%), Gaps = 8/128 (6%)

Query: 56  INRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNK 115
           + ++ ++K +     K G Y + +          Y+K+      E+    +        +
Sbjct: 10  LEQSTIVKERGTVYFKEGKYKQALLQ--------YKKIVSWLEYESSFSNEEAQKAQALR 61

Query: 116 HQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKI 175
              +  L  C L ++               D       + R +    +   + +    + 
Sbjct: 62  LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 121

Query: 176 TLNINYSN 183
            L +  +N
Sbjct: 122 VLQLYPNN 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 890,083
Number of extensions: 41076
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 23
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)