BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1181
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52503|NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2
Length = 116
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
+++ DYR VRFVD++K VN FAIDLIA+ P + R++ CDGG G GHPKVYINLDK
Sbjct: 38 YDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRIIACDGGGGALGHPKVYINLDK 97
Query: 62 PG-NHSCGYCGLRFFKEDSHHH 82
+CGYCGL+F HHH
Sbjct: 98 ETKTGTCGYCGLQF---KQHHH 116
>sp|Q4R5X8|NDUS6_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Macaca fascicularis GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
++ DYR +RFVD++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINLDK
Sbjct: 46 YDDKDYRRIRFVDRQKEVNENFAIDLIAEQPVSEVQTRVIACDGGGGALGHPKVYINLDK 105
Query: 62 PG-NHSCGYCGLRF 74
+CGYCGL+F
Sbjct: 106 ETKTGTCGYCGLQF 119
>sp|Q0MQH5|NDUS6_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINLDK
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 PG-NHSCGYCGLRFFKEDSHHH 82
+CGYCGL+F HHH
Sbjct: 106 ETKTGTCGYCGLQF---RQHHH 124
>sp|Q0MQH7|NDUS6_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1
Length = 124
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 56/82 (68%), Gaps = 4/82 (4%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINLDK
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 PG-NHSCGYCGLRFFKEDSHHH 82
+CGYCGL+F + HHH
Sbjct: 106 ETKTGTCGYCGLQFRQ---HHH 124
>sp|O75380|NDUS6_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1
Length = 124
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 56/82 (68%), Gaps = 4/82 (4%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINLDK
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 PG-NHSCGYCGLRFFKEDSHHH 82
+CGYCGL+F + HHH
Sbjct: 106 ETKTGTCGYCGLQFRQ---HHH 124
>sp|P23934|NDUS6_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Bos taurus GN=NDUFS6 PE=1 SV=2
Length = 124
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
++ DYR VRFV ++K VN FAIDLIAE P RV+ CDGG G GHP+VYINLDK
Sbjct: 46 YDDGDYRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDK 105
Query: 62 PG-NHSCGYCGLRFFKEDSHH 81
+CGYCGL+F ++ HH
Sbjct: 106 ETKTGTCGYCGLQFRQQ--HH 124
>sp|Q0MQH6|NDUS6_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS6 PE=2
SV=1
Length = 124
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDK 61
++ DYR +RFV ++K VN FAIDLIAE P + RV+ CDGG G GHPKVYINLDK
Sbjct: 46 YDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDK 105
Query: 62 PG-NHSCGYCGLRF 74
+CGYCGL+F
Sbjct: 106 ETKTGTCGYCGLQF 119
>sp|P52504|NDUS6_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Rattus norvegicus GN=Ndufs6 PE=3 SV=1
Length = 116
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 6 DYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDKPG-N 64
DYR +RFVD++K VN FAIDLIA+ P R++ CDGG G GHPKVYINLDK
Sbjct: 42 DYRGIRFVDRQKEVNENFAIDLIAQQPVNEVDRRIIACDGGGGALGHPKVYINLDKETKT 101
Query: 65 HSCGYCGLRFFKEDSHH 81
+C YCGL+F + HH
Sbjct: 102 GTCAYCGLQF--KQQHH 116
>sp|Q19724|NDUS6_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Caenorhabditis elegans GN=nduf-6 PE=3
SV=1
Length = 140
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 2 FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKE-RVVWCDGGSGPTGHPKVYINLD 60
+++ DYR RF +K VN A+ LI + PP+ C + RVV+CDGG GHPKVYINLD
Sbjct: 49 WDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDGGHPALGHPKVYINLD 108
Query: 61 KPGNHSCGYCGLRFFKE 77
KPG H+CGYCG RF+
Sbjct: 109 KPGVHACGYCGNRFYNS 125
>sp|Q5AUI1|LBSA_EMENI Lactobacillus shifted protein OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lbsA
PE=1 SV=1
Length = 213
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 24 AIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDKPGNHSCGYCGLRFFKEDSHHH 82
AI+LI + P + K+++V CDGG GP GHP+++IN DKP CGYCGL F E HH
Sbjct: 119 AIELIHKQPVRWVKDKIVSCDGGGGPLGHPRIFINTDKPEIVPCGYCGLPFAHE--HHR 175
>sp|Q9M9M6|NDUS6_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3
SV=1
Length = 110
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 25 IDLIAEVPPKPCKERVVWCDGGSGPT-GHPKVYINLDKPGNHSCGYCGLRFFKEDSHHH 82
++LI+EVPP R+V C+G + P GHP +I LD C YCGLR+ ++ HHH
Sbjct: 54 MELISEVPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQD--HHH 110
>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis
thaliana GN=At1g52710 PE=2 SV=2
Length = 90
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 6 DYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDKPGNH 65
+Y R +D + H + F V +R + C GG G GH V+ LDK +
Sbjct: 7 EYSGRRLLDID-HPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSF 65
Query: 66 SCGYCGLRF 74
C C F
Sbjct: 66 ECPVCSQYF 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.143 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,152,519
Number of Sequences: 539616
Number of extensions: 1532726
Number of successful extensions: 2644
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2620
Number of HSP's gapped (non-prelim): 17
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)