RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1181
         (82 letters)



>gnl|CDD|204429 pfam10276, zf-CHCC, Zinc-finger domain.  This is a short
          zinc-finger domain conserved from fungi to humans. It
          is Cx8Hx14Cx2C.
          Length = 40

 Score = 57.3 bits (139), Expect = 4e-13
 Identities = 26/38 (68%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 38 ERVVWCDGGSGPTGHPKVYINLDK-PGNHSCGYCGLRF 74
           R V CDGG GP GHP+VYINLD  PG   C YCGLRF
Sbjct: 2  GRRVSCDGGGGPLGHPRVYINLDDEPGPVECPYCGLRF 39


>gnl|CDD|226826 COG4391, COG4391, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 62

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 43 CDGGSGPTGHPKVYINLDKPGNHSCGYCGLRF 74
          C G   P  HP+V++++   G   C YC  R+
Sbjct: 27 CPGPEPPNDHPRVFLDMGDEGEVVCPYCSTRY 58


>gnl|CDD|177931 PLN02294, PLN02294, cytochrome c oxidase subunit Vb.
          Length = 174

 Score = 28.3 bits (63), Expect = 0.30
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 15/59 (25%)

Query: 39  RVVWCDGGSGPTGHPKVYINLDKPGNHSCGYCGLRFFKE---------------DSHHH 82
           R+V C GG G   H  V+  L+K  +  C  C   F  E               D HHH
Sbjct: 116 RIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDDDDHHHH 174


>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional.
          Length = 230

 Score = 27.8 bits (62), Expect = 0.50
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 37  KERVVWCDGGSGPTGH-----PKVYINLDKPGNHS 66
           +E V+      G TGH     P +Y+ LD P +H+
Sbjct: 103 EEAVIRTLAHFGVTGHRVAGAPGIYVRLDDPFSHA 137


>gnl|CDD|165528 PHA03270, PHA03270, envelope glycoprotein C; Provisional.
          Length = 466

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 27  LIAEVPPKPCKERVVWCDGGSGPTGHPKVY 56
           L+ +  P     RV W +G +GP   P++Y
Sbjct: 145 LVYDSAPNRTDPRVRWAEG-AGPGARPRLY 173


>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
          production and conversion].
          Length = 608

 Score = 25.4 bits (56), Expect = 4.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 9  PVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDG 45
          P+  +DK   +N Q     I EV      + VV CDG
Sbjct: 5  PIDGLDKLAPINNQGLKSWIEEVAELTEPDDVVVCDG 41


>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of
           proteins bind FAD as a cofactor.
          Length = 218

 Score = 24.5 bits (54), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 51  GHPKVYINLDKPGNHSCGYCGL 72
           G+P   +  +  G H CG+CGL
Sbjct: 98  GYPVEAVPRNSNGCHYCGFCGL 119


>gnl|CDD|240240 PTZ00043, PTZ00043, cytochrome c oxidase subunit; Provisional.
          Length = 268

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 38  ERVVWCDGGSGPTGHPKVYINLDKPGNHSCGYC 70
           ERVV C GG+G   H  ++    +   + CG C
Sbjct: 155 ERVVGCTGGTGEHEHVPLWFRCREGFLYRCGEC 187


>gnl|CDD|215953 pfam00500, Late_protein_L1, L1 (late) protein. 
          Length = 500

 Score = 24.6 bits (54), Expect = 7.3
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 10/29 (34%)

Query: 35  PCKERVVW-CDG---------GSGPTGHP 53
           P KER+VW C G         G G +GHP
Sbjct: 91  PDKERLVWACRGVEVGRGQPLGVGVSGHP 119


>gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the
           GT1 family of glycosyltransferases. Phosphatidylinositol
           glycan-class A (PIG-A), an X-linked gene in humans, is
           necessary for the synthesis of
           N-acetylglucosaminyl-phosphatidylinositol, a very early
           intermediate in glycosyl phosphatidylinositol
           (GPI)-anchor biosynthesis. The GPI-anchor is an
           important cellular structure that facilitates the
           attachment of many proteins to cell surfaces. Somatic
           mutations in PIG-A have been associated with Paroxysmal
           Nocturnal Hemoglobinuria (PNH), an acquired
           hematological disorder.
          Length = 398

 Score = 24.5 bits (54), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 25  IDLIAEVPPKPCK--ERVVWCDGGSGP 49
           IDL+  + P+ CK    V +  GG GP
Sbjct: 208 IDLLVGIIPEICKKHPNVRFIIGGDGP 234


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.143    0.486 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,236,759
Number of extensions: 323127
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 12
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)