RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1181
(82 letters)
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodobacter sphaeroides 2}
Length = 80
Score = 76.6 bits (188), Expect = 1e-20
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 13 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLDKPGNH-SCGYCG 71
+ ++ + A I V CDGG G GHP+V++++ CGYC
Sbjct: 1 MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCD 60
Query: 72 LRFFKEDS------HHH 82
R+ E HHH
Sbjct: 61 RRYIHESFAAAKLEHHH 77
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
genomics, PSI-2, protein structure initiative; NMR
{Silicibacter pomeroyi}
Length = 67
Score = 55.4 bits (133), Expect = 2e-12
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 38 ERVVWCDGGSGPTGHPKVYINLDKP-GNHSCGYCGLRFFKEDS------HHH 82
+ V CDGG G GHP+V++ + + G C YC ++ + S HHH
Sbjct: 13 KSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSKADALEHHH 64
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural
genomics, unknown function, PSI-2, protein structure
initiative; NMR {Bartonella henselae str}
Length = 87
Score = 43.5 bits (102), Expect = 2e-07
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 39 RVVWCDGGSGPTGHPKVYINLDKPGNHSCGYCGLRFFKEDSHHH 82
+ C G + P HP ++I++ C YC + + S +
Sbjct: 23 KEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRYDPSLSY 66
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 27.4 bits (61), Expect = 0.40
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 1 KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGP 49
K+ + + DK V Q+ DL+ + P+P E ++ D G G
Sbjct: 24 GTAKNFWDATLYQDKHSFV-WQYGEDLLQLLNPQP-GEFIL--DLGCGT 68
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 24.6 bits (53), Expect = 4.3
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 10/37 (27%)
Query: 36 CKERVVWCDGGSGPTGHPKVYINLDKPGNHSCGYCGL 72
C E C +P + G+ C CGL
Sbjct: 24 CPE----CKV------YPPKIVERFSEGDVVCALCGL 50
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 24.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 10/29 (34%)
Query: 35 PCKERVVW-CDG---------GSGPTGHP 53
P +R+VW C G G G +GHP
Sbjct: 93 PDTQRLVWACVGVEVGRGQPLGVGISGHP 121
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single
cryo-EM, high resolution, late protein, VIR virus; 4.20A
{Bovine papillomavirus type 1}
Length = 495
Score = 24.4 bits (53), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 10/29 (34%)
Query: 35 PCKERVVW-CDG---------GSGPTGHP 53
P KER+VW G G TGHP
Sbjct: 89 PSKERLVWAVIGVQVSRGQPLGGTVTGHP 117
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Geobacter metallireducens gs-15}
Length = 112
Score = 23.9 bits (52), Expect = 6.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 60 DKPGNHSCGYCGLRFFKED 78
++ C YCG F E+
Sbjct: 31 NRIARGICHYCGEIFPPEE 49
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 24.0 bits (53), Expect = 6.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 54 KVYINLDKPGNHS 66
+V + LDK N+S
Sbjct: 270 QVVVTLDKYANNS 282
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 24.0 bits (53), Expect = 6.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 54 KVYINLDKPGNHS 66
V + LD+ GN S
Sbjct: 264 NVVVTLDRHGNTS 276
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 24.0 bits (53), Expect = 6.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 54 KVYINLDKPGNHS 66
KV++N+ K GN S
Sbjct: 256 KVFVNIQKYGNTS 268
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction,
PAPS reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 23.7 bits (51), Expect = 7.5
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 25 IDLIAEVPPKPCKERVVWCDGGSGPTGH 52
ID+++++ K +++ D T H
Sbjct: 58 IDMLSKLSEKYYMPELLFID-----TLH 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.143 0.486
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,406,491
Number of extensions: 72624
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 14
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)