RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1181
         (82 letters)



>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 25.8 bits (57), Expect = 0.65
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 10/29 (34%)

Query: 35  PCKERVVW-CDG---------GSGPTGHP 53
           P  +R+VW C G         G G +GHP
Sbjct: 74  PDTQRLVWACVGVEVGRGQPLGVGISGHP 102


>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 98

 Score = 24.7 bits (54), Expect = 0.86
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 38 ERVVWCDGGSGPTGHPKVYINLDKPGNHSCGYCGLRFFKEDSHHH 82
          +R+V C           ++  L K     C  CG   +K   H  
Sbjct: 55 KRIVGCICE--EDNSTVIWFWLHKGEAQRCPSCG-THYKLVPHQL 96


>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 118

 Score = 23.9 bits (52), Expect = 2.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 1   KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDG 45
           KF+ +    +   D+E     +FA+ L++E   K    R +   G
Sbjct: 58  KFDPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSG 102


>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 106

 Score = 23.9 bits (52), Expect = 2.2
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 13 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDG 45
           D+    +  F++ L++++       +V+   G
Sbjct: 58 SDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSG 90


>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.2 bits (44), Expect = 6.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 67 CGYCGLRFFKEDSHH 81
          C YC LRFF  +   
Sbjct: 3  CPYCSLRFFSPELKQ 17


>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 202

 Score = 22.5 bits (48), Expect = 9.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 11 RFVDKEKHVNTQFA 24
          RFVDK    N Q  
Sbjct: 3  RFVDKNGRCNVQHG 16


>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium
          sporotrichioides [TaxId: 5514]}
          Length = 354

 Score = 22.6 bits (48), Expect = 9.4
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 2  FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCD 44
           E   YR   +  +E+  N  +A +  A    +P +++++  D
Sbjct: 17 LEYIRYRDSNYTREERIENLHYAYNKAAHHFAQPRQQQLLKVD 59


>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
          different fingers {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 36

 Score = 21.2 bits (44), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 58 NLDKPGNHSCGYCGLRF 74
          +L KP    C  CG+ F
Sbjct: 2  SLLKPARFMCLPCGIAF 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.143    0.486 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,996
Number of extensions: 15601
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 11
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)