BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11810
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The
Coiled-Coil Domain At 3.0 Angstrom Resolution
Length = 575
Score = 121 bits (304), Expect = 9e-29, Method: Composition-based stats.
Identities = 56/61 (91%), Positives = 58/61 (95%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 5 MNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 64
Query: 81 I 81
+
Sbjct: 65 V 65
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed
With The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+KL KK
Sbjct: 5 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64
Query: 81 I 81
+
Sbjct: 65 V 65
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 105 bits (262), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+KL KK
Sbjct: 5 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64
Query: 81 I 81
+
Sbjct: 65 V 65
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+KL KK
Sbjct: 7 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 66
Query: 81 I 81
+
Sbjct: 67 V 67
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+KL KK
Sbjct: 7 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 66
Query: 81 I 81
+
Sbjct: 67 V 67
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+KL KK
Sbjct: 7 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 66
Query: 81 I 81
+
Sbjct: 67 V 67
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+KL KK
Sbjct: 5 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64
Query: 81 I 81
+
Sbjct: 65 V 65
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix
Of Moesin
Length = 346
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
++VRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+KL KK
Sbjct: 5 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 64
Query: 81 I 81
+
Sbjct: 65 V 65
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
++VRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+KL KK
Sbjct: 5 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 64
Query: 81 I 81
+
Sbjct: 65 V 65
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 101 bits (251), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVW+FGL Y D++G TW+KL KK
Sbjct: 4 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKK 63
Query: 81 I 81
+
Sbjct: 64 V 64
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 100 bits (248), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
++VRVTT DAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+KL KK
Sbjct: 2 ISVRVTTXDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61
Query: 81 I 81
+
Sbjct: 62 V 62
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 23 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKI 81
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KK+
Sbjct: 25 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 82
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 23 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKI 81
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KK+
Sbjct: 25 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 82
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 23 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKI 81
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KK+
Sbjct: 12 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 69
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 23 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKI 81
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KK+
Sbjct: 7 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 64
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 21 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 79
M +V +D +E ++ + G+ LFD+ + + L E +FGL Y D+ W+ K
Sbjct: 3 MQCKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLDPAK 62
Query: 80 KIHK 83
+I K
Sbjct: 63 EIKK 66
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 21 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 79
M +V +D +E ++ + G+ LFD+ + + L E +FGL Y D+ W+ K
Sbjct: 3 MQCKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLDPAK 62
Query: 80 KIHK 83
+I K
Sbjct: 63 EIKK 66
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 21 MNVRVTTMDAEL-EFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 79
M+ +V+ +D + E ++ G+ L + + + L E +FGL D+ TW+ K
Sbjct: 1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 60
Query: 80 KIHK 83
+I K
Sbjct: 61 EIKK 64
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 26 TTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHK 83
TT+D LE +++ TG + D+ K +GL V + L DS GD TW K + + K
Sbjct: 24 TTVDEALELLVENRITGFPVIDEDWKLVGL--VSDYDLLALDS-GDSTW-KTFNAVQK 77
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm
Domain Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm
Domain Of Protein 4.1r
Length = 296
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 19 YEMNVRVTTMDAEL-EFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKL 77
++ + +V+ +D + E ++ G+ L + + + L E +FGL D+ TW+
Sbjct: 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDS 75
Query: 78 YKKIHK 83
K+I K
Sbjct: 76 AKEIKK 81
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 42 GKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76
GK L Q + G R+ W GL A SRGD +K
Sbjct: 60 GKTLQGQGDRA-GARQAWESGLAAAQSRGDQQVVK 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,707,844
Number of Sequences: 62578
Number of extensions: 89300
Number of successful extensions: 182
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 22
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)