Query psy11810
Match_columns 93
No_of_seqs 117 out of 467
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:36:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09379 FERM_N: FERM N-termin 99.8 5.4E-21 1.2E-25 119.1 6.4 66 25-90 1-68 (80)
2 KOG3530|consensus 99.8 2.3E-21 4.9E-26 158.8 5.2 74 17-90 7-81 (616)
3 KOG3531|consensus 99.7 4.8E-18 1E-22 143.6 6.5 88 2-89 17-109 (1036)
4 KOG3527|consensus 99.7 5.2E-18 1.1E-22 143.6 4.2 73 17-89 28-101 (975)
5 KOG3529|consensus 99.6 2.7E-16 5.9E-21 129.9 2.1 76 16-91 9-84 (596)
6 KOG0792|consensus 99.4 6.9E-14 1.5E-18 120.6 4.3 69 20-88 22-92 (1144)
7 smart00295 B41 Band 4.1 homolo 99.2 8.2E-11 1.8E-15 82.5 7.4 69 19-87 2-72 (207)
8 cd01777 SNX27_RA Ubiquitin dom 96.4 0.0049 1.1E-07 40.2 3.5 48 21-68 2-52 (87)
9 cd06407 PB1_NLP A PB1 domain i 95.8 0.05 1.1E-06 34.7 6.0 54 22-75 2-55 (82)
10 smart00666 PB1 PB1 domain. Pho 92.8 0.64 1.4E-05 28.3 6.0 50 21-71 2-51 (81)
11 cd06396 PB1_NBR1 The PB1 domai 92.4 0.76 1.7E-05 29.5 6.1 52 22-76 2-55 (81)
12 PF11543 UN_NPL4: Nuclear pore 92.0 0.33 7.1E-06 30.7 4.0 41 18-58 2-42 (80)
13 cd06408 PB1_NoxR The PB1 domai 92.0 1 2.2E-05 29.3 6.3 50 20-72 2-51 (86)
14 cd05992 PB1 The PB1 domain is 90.0 1.6 3.4E-05 26.3 5.6 50 22-72 2-52 (81)
15 PF11976 Rad60-SLD: Ubiquitin- 89.9 1 2.2E-05 26.8 4.6 46 21-66 1-47 (72)
16 cd01763 Sumo Small ubiquitin-r 89.3 1.8 3.9E-05 27.2 5.6 42 16-57 7-49 (87)
17 cd06397 PB1_UP1 Uncharacterize 88.2 1.7 3.6E-05 28.1 4.9 57 23-80 3-59 (82)
18 PF00564 PB1: PB1 domain; Int 87.7 3.5 7.7E-05 24.9 6.1 52 21-73 2-54 (84)
19 PF00788 RA: Ras association ( 87.6 3 6.5E-05 25.4 5.8 63 21-83 3-73 (93)
20 smart00213 UBQ Ubiquitin homol 87.2 1.8 4E-05 24.4 4.4 44 21-65 1-44 (64)
21 cd06398 PB1_Joka2 The PB1 doma 87.2 2.7 5.8E-05 27.3 5.5 57 23-79 3-64 (91)
22 cd01806 Nedd8 Nebb8-like ubiq 86.1 2.2 4.9E-05 25.2 4.5 37 21-57 1-38 (76)
23 PF02196 RBD: Raf-like Ras-bin 85.2 3.6 7.7E-05 25.2 5.1 37 22-58 2-39 (71)
24 cd06409 PB1_MUG70 The MUG70 pr 84.6 4.1 9E-05 26.3 5.4 45 31-75 12-58 (86)
25 PF11470 TUG-UBL1: GLUT4 regul 83.8 1.6 3.4E-05 26.8 3.0 46 31-82 8-53 (65)
26 cd01760 RBD Ubiquitin-like dom 83.2 2.5 5.4E-05 26.3 3.8 44 22-66 1-45 (72)
27 smart00455 RBD Raf-like Ras-bi 83.0 5.8 0.00013 24.3 5.4 44 23-67 2-46 (70)
28 cd01768 RA RA (Ras-associating 80.9 9.6 0.00021 23.3 5.9 62 23-84 2-70 (87)
29 cd06406 PB1_P67 A PB1 domain i 78.9 8.7 0.00019 24.6 5.3 47 21-69 3-49 (80)
30 PF00789 UBX: UBX domain; Int 78.2 8.8 0.00019 23.3 5.1 48 18-65 4-52 (82)
31 cd01809 Scythe_N Ubiquitin-lik 77.9 7 0.00015 22.7 4.4 44 21-65 1-45 (72)
32 smart00314 RA Ras association 75.7 16 0.00035 22.5 6.5 66 22-87 4-75 (90)
33 cd01807 GDX_N ubiquitin-like d 75.3 9 0.0002 22.9 4.5 37 21-57 1-38 (74)
34 KOG3531|consensus 72.9 0.12 2.6E-06 45.6 -5.9 66 20-86 177-244 (1036)
35 cd01805 RAD23_N Ubiquitin-like 72.5 12 0.00026 22.2 4.6 35 21-55 1-36 (77)
36 KOG3784|consensus 70.7 5.1 0.00011 32.7 3.2 48 20-67 107-157 (407)
37 cd01803 Ubiquitin Ubiquitin. U 67.0 17 0.00037 21.2 4.4 36 21-56 1-37 (76)
38 PTZ00044 ubiquitin; Provisiona 66.2 19 0.0004 21.4 4.4 36 21-56 1-37 (76)
39 cd06404 PB1_aPKC PB1 domain is 65.9 33 0.00072 22.1 5.7 53 23-75 3-55 (83)
40 cd01792 ISG15_repeat1 ISG15 ub 64.3 22 0.00049 21.6 4.6 35 21-55 3-38 (80)
41 cd01775 CYR1_RA Ubiquitin doma 63.4 38 0.00083 22.5 5.8 66 20-85 2-68 (97)
42 KOG2378|consensus 62.0 42 0.0009 28.4 6.9 64 12-79 227-293 (573)
43 cd01812 BAG1_N Ubiquitin-like 61.9 23 0.00051 20.4 4.2 36 21-56 1-36 (71)
44 cd01787 GRB7_RA RA (RAS-associ 60.3 33 0.00071 22.2 4.9 44 21-64 3-47 (85)
45 TIGR01961 NuoC_fam NADH (or F4 59.8 6.8 0.00015 25.9 1.8 39 46-84 71-116 (121)
46 cd01804 midnolin_N Ubiquitin-l 59.4 36 0.00079 20.7 4.9 35 21-55 2-37 (78)
47 cd01817 RGS12_RBD Ubiquitin do 58.9 19 0.00042 22.7 3.6 35 22-56 1-36 (73)
48 cd01813 UBP_N UBP ubiquitin pr 56.3 30 0.00066 21.0 4.2 35 22-56 2-36 (74)
49 cd01776 Rin1_RA Ubiquitin doma 54.9 47 0.001 21.6 5.0 53 23-76 2-59 (87)
50 PF13019 Telomere_Sde2: Telome 53.4 49 0.0011 23.8 5.4 46 21-66 1-51 (162)
51 PRK12494 NADH dehydrogenase su 52.0 7.4 0.00016 27.9 1.0 33 46-78 114-149 (172)
52 KOG3527|consensus 50.8 6.3 0.00014 35.2 0.6 70 18-87 381-452 (975)
53 PRK07785 NADH dehydrogenase su 49.9 12 0.00025 28.4 1.8 47 46-92 165-218 (235)
54 cd01802 AN1_N ubiquitin-like d 47.4 74 0.0016 20.7 5.1 38 19-56 26-64 (103)
55 cd02639 R3H_RRM R3H domain of 46.8 37 0.00081 20.3 3.4 25 34-58 22-46 (60)
56 cd06401 PB1_TFG The PB1 domain 45.6 80 0.0017 20.3 5.4 51 23-73 3-56 (81)
57 PF08817 YukD: WXG100 protein 45.0 62 0.0013 19.6 4.3 65 22-88 2-72 (79)
58 cd01798 parkin_N amino-termina 43.7 55 0.0012 19.1 3.8 41 24-65 2-43 (70)
59 cd00196 UBQ Ubiquitin-like pro 43.6 35 0.00076 17.2 2.7 40 25-65 2-42 (69)
60 cd01818 TIAM1_RBD Ubiquitin do 42.6 44 0.00096 21.3 3.4 42 25-66 4-47 (77)
61 cd06402 PB1_p62 The PB1 domain 41.6 95 0.0021 20.0 5.6 55 22-76 2-63 (87)
62 PF14847 Ras_bdg_2: Ras-bindin 39.7 76 0.0016 21.0 4.3 35 23-57 3-38 (105)
63 PF06100 Strep_67kDa_ant: Stre 39.6 17 0.00036 30.5 1.4 21 39-59 409-429 (500)
64 cd01808 hPLIC_N Ubiquitin-like 39.2 81 0.0017 18.5 4.1 43 22-65 2-44 (71)
65 cd01769 UBL Ubiquitin-like dom 38.4 67 0.0014 17.9 3.5 40 25-65 2-42 (69)
66 PRK07735 NADH dehydrogenase su 38.2 17 0.00038 29.9 1.2 41 47-87 378-425 (430)
67 cd00419 Ferrochelatase_C Ferro 38.0 39 0.00086 22.9 2.8 34 44-78 45-78 (135)
68 KOG0005|consensus 36.0 82 0.0018 19.5 3.7 47 21-67 1-52 (70)
69 PRK13977 myosin-cross-reactive 35.1 21 0.00046 30.3 1.3 19 39-57 427-445 (576)
70 cd06403 PB1_Par6 The PB1 domai 34.5 93 0.002 20.0 3.9 62 29-90 8-71 (80)
71 PRK06074 NADH dehydrogenase su 31.4 29 0.00062 25.1 1.3 39 46-84 101-146 (189)
72 cd01810 ISG15_repeat2 ISG15 ub 30.2 1.2E+02 0.0026 17.9 3.8 41 24-65 2-43 (74)
73 cd06889 PX_NoxO1 The phosphoin 30.1 1.2E+02 0.0027 20.6 4.2 29 3-31 4-32 (121)
74 PF07162 B9-C2: Ciliary basal 30.0 79 0.0017 22.0 3.4 28 2-30 60-87 (168)
75 CHL00012 ndhJ NADH dehydrogena 27.1 35 0.00075 24.4 1.1 40 47-86 101-147 (158)
76 smart00460 TGc Transglutaminas 26.4 1E+02 0.0022 17.2 3.0 35 43-77 13-55 (68)
77 PF00240 ubiquitin: Ubiquitin 26.2 1.3E+02 0.0029 17.0 3.5 30 27-56 2-32 (69)
78 PF14533 USP7_C2: Ubiquitin-sp 25.0 1.1E+02 0.0023 22.3 3.4 37 22-58 20-62 (213)
79 cd01791 Ubl5 UBL5 ubiquitin-li 22.0 1.9E+02 0.0042 17.4 4.8 35 21-55 2-37 (73)
80 cd07762 CYTH-like_Pase_1 Uncha 22.0 1.1E+02 0.0024 21.5 3.0 33 25-57 134-169 (180)
81 PF01337 Barstar: Barstar (bar 21.7 74 0.0016 19.5 1.8 27 34-62 3-29 (90)
82 KOG4261|consensus 21.2 63 0.0014 29.1 1.8 46 19-64 83-129 (1003)
83 cd01794 DC_UbP_C dendritic cel 20.1 2.1E+02 0.0045 17.0 4.1 33 24-56 2-35 (70)
No 1
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=99.84 E-value=5.4e-21 Score=119.10 Aligned_cols=66 Identities=35% Similarity=0.662 Sum_probs=60.3
Q ss_pred EEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE-ecCCCCeeccccCcccccccccCCC
Q psy11810 25 VTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY-ADSRGDLTWIKLYKKIHKSTTLATT 90 (93)
Q Consensus 25 V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y-~d~~~~~~WLdl~K~i~kQ~~~~~~ 90 (93)
|++||+ +.+|+++++++|++|+++||++|||.|.+||||+| .++++..+||+++|+|.+|.....+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 68 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNP 68 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCC
Confidence 789988 67899999999999999999999999999999999 7889999999999999999887433
No 2
>KOG3530|consensus
Probab=99.83 E-value=2.3e-21 Score=158.75 Aligned_cols=74 Identities=27% Similarity=0.474 Sum_probs=68.8
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCCC
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLATT 90 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~~ 90 (93)
..+.+.|+|.|||+ .+.+++++++.|++|||.||.+|+|+|+|||||+|+|...+.+|||+.|+|+||++...|
T Consensus 7 ~k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~I~kqvK~gpp 81 (616)
T KOG3530|consen 7 SKKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKSIKKQVKIGPP 81 (616)
T ss_pred CCcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceeeeeccceeeechhhcceecCcchhHHHHhccCCC
Confidence 34679999999966 788889999999999999999999999999999999999999999999999999987654
No 3
>KOG3531|consensus
Probab=99.73 E-value=4.8e-18 Score=143.64 Aligned_cols=88 Identities=26% Similarity=0.425 Sum_probs=76.6
Q ss_pred CCCceeeeeeecCC----CCCceEEEEEEeCCCeEE-EEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccc
Q psy11810 2 DHPFNFVTLTFGHP----VDSYEMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76 (93)
Q Consensus 2 ~~~~~~~~l~~~~~----~~~k~~~~~V~lLD~~~~-~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd 76 (93)
-|++.++.|-..+. ..++...+++++||.+.+ |.|+.+|.|+.||++||+||||.|.|||||.|.|.++.++|||
T Consensus 17 ~~~~~~s~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e~dyfglef~~~~~~~~wld 96 (1036)
T KOG3531|consen 17 RGRVGISTLELGQTVAPFHLGKICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVECDYFGLEFQDINGNHCWLD 96 (1036)
T ss_pred CCCcCcccccCCCCCCCccCCceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceeeccccceeeccccCceEEec
Confidence 46677777766532 246788999999977555 9999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCC
Q psy11810 77 LYKKIHKSTTLAT 89 (93)
Q Consensus 77 l~K~i~kQ~~~~~ 89 (93)
++|+|.+|+.-.+
T Consensus 97 ~~kpi~rqi~~~~ 109 (1036)
T KOG3531|consen 97 LEKPILRQIRRPK 109 (1036)
T ss_pred ccchHHHHhcCcc
Confidence 9999999998744
No 4
>KOG3527|consensus
Probab=99.71 E-value=5.2e-18 Score=143.63 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=68.5
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCC
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLAT 89 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~ 89 (93)
.++.+.|+|+|||+ .++|.++++++|++||+.||++|||+|+|||||.|.++..++.|||+.|+|+||+++-.
T Consensus 28 ~~k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~i~k~vr~~~ 101 (975)
T KOG3527|consen 28 VTKDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKEIKKQVRSFP 101 (975)
T ss_pred cCCCccceEEEeeCCcceeeeecccccchhHHHHhhccchhhhhhceeEEecCCCCccccccchhhhcccccCc
Confidence 35789999999977 78899999999999999999999999999999999999999999999999999998643
No 5
>KOG3529|consensus
Probab=99.60 E-value=2.7e-16 Score=129.87 Aligned_cols=76 Identities=62% Similarity=0.931 Sum_probs=72.3
Q ss_pred CCCceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCCCC
Q psy11810 16 VDSYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLATTE 91 (93)
Q Consensus 16 ~~~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~~~ 91 (93)
++.+.+.|+|+++|++.+|.|+++.+|++||++||+++||.|+|||||+|+|..|+..||.++|.+.-|..++.+|
T Consensus 9 ~~~~~~~~rv~~~d~e~~~~i~~~~t~~~l~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~~v~~~d~~k~~~ 84 (596)
T KOG3529|consen 9 KMTKPINVRVTTMDAELEFAIQPKTTGKQLFDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDKKVLDQDVPKDSP 84 (596)
T ss_pred cccCCcceeeeehhhhhhhhhCcchhHHHHHHHHhccCCCchhhhcccccccCCCCcchhhccchhhhhhcCCCCC
Confidence 4567899999999998889999999999999999999999999999999999999999999999999999999887
No 6
>KOG0792|consensus
Probab=99.44 E-value=6.9e-14 Score=120.63 Aligned_cols=69 Identities=28% Similarity=0.525 Sum_probs=64.9
Q ss_pred eEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeee-eEEecCCCCeeccccCcccccccccC
Q psy11810 20 EMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFG-LQYADSRGDLTWIKLYKKIHKSTTLA 88 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFG-L~y~d~~~~~~WLdl~K~i~kQ~~~~ 88 (93)
.+.|++.+||+ ..+|+++..++||++++.||++|++.|++||| +.+.++.++.+|||++|+++||+..-
T Consensus 22 ~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~~yFgl~~~~~k~~~~rWvdleK~lkkql~k~ 92 (1144)
T KOG0792|consen 22 CVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELREKEYFGLLWSPDKPDQIRWVDLEKPLKKQLIKV 92 (1144)
T ss_pred eEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcccccccccccccCCccCccceeccchhHHHhhhcc
Confidence 69999999999 78899999999999999999999999999999 66788899999999999999999765
No 7
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.19 E-value=8.2e-11 Score=82.53 Aligned_cols=69 Identities=29% Similarity=0.579 Sum_probs=62.1
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCe-eccccCccccccccc
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL-TWIKLYKKIHKSTTL 87 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~-~WLdl~K~i~kQ~~~ 87 (93)
+.+.|+|.++|+ ..++.+++.++++++++.||+++||.+..||||.+.+..+.. .|+++.++|..|...
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 467899999988 678999999999999999999999999999999999876555 899999999988754
No 8
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=96.36 E-value=0.0049 Score=40.23 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=41.5
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceee--eeeeeEEecC
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV--WFFGLQYADS 68 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~--dYFGL~y~d~ 68 (93)
+..+|.+.|+ .+.+.|.++.+..++++.||+.+||.+. -||+|--..+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~ 52 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVIN 52 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEec
Confidence 4678888988 7889999999999999999999999765 4999987643
No 9
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.77 E-value=0.05 Score=34.72 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=44.8
Q ss_pred EEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeecc
Q psy11810 22 NVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI 75 (93)
Q Consensus 22 ~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WL 75 (93)
.++++.=+..+.|.+++...=++|.++|.+.+++.+..-|.|.|.|.+|.++=|
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~l 55 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLL 55 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEe
Confidence 456666555788999999999999999999999976678999999988765544
No 10
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.76 E-value=0.64 Score=28.28 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=40.0
Q ss_pred EEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCC
Q psy11810 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD 71 (93)
Q Consensus 21 ~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~ 71 (93)
+.++|..-+....+.+++..+=.+|.++|++.+++.. .-|.|.|.|.+|.
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd 51 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGD 51 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCC
Confidence 3556666233667999999999999999999999865 5689999988776
No 11
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=92.39 E-value=0.76 Score=29.51 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=42.4
Q ss_pred EEEEEeCCCeEEEEECC--CChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccc
Q psy11810 22 NVRVTTMDAELEFAIQH--TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76 (93)
Q Consensus 22 ~~~V~lLD~~~~~~v~~--~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd 76 (93)
.++|+.=+..+.|.+++ ..+=.+|..+|-...+|. -|+|.|.|.++.++=|.
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~ls 55 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVN 55 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEE
Confidence 45565556688899999 667789999999999998 89999999988876553
No 12
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=92.04 E-value=0.33 Score=30.69 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=30.1
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceee
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREV 58 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~ 58 (93)
...|.+||+.-|+...++++++++=.+|+++|.+.+++...
T Consensus 2 ~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~ 42 (80)
T PF11543_consen 2 ASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDS 42 (80)
T ss_dssp ----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TT
T ss_pred CccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCc
Confidence 35689999999999999999999999999999999998644
No 13
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=91.96 E-value=1 Score=29.28 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=43.3
Q ss_pred eEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCe
Q psy11810 20 EMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL 72 (93)
Q Consensus 20 ~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~ 72 (93)
.+.++|+.-+...-+.|++...=++|.++|.+.+++. ..|.++|.|. |..
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD~ 51 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDD-GDM 51 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcC-CCC
Confidence 3678888777788899999999999999999999995 6999999998 543
No 14
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=89.99 E-value=1.6 Score=26.32 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=40.1
Q ss_pred EEEEEeCCCeEEEEEC-CCChhhhHHHHHhcccCceeeeeeeeEEecCCCCe
Q psy11810 22 NVRVTTMDAELEFAIQ-HTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL 72 (93)
Q Consensus 22 ~~~V~lLD~~~~~~v~-~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~ 72 (93)
.++|+.-+....+.+. ..++=.+|.++|++.+++.. .-|.+.|.|.+|..
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~ 52 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDL 52 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCE
Confidence 3455555667778888 88889999999999999865 67899999987743
No 15
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=89.86 E-value=1 Score=26.77 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=38.8
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEe
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA 66 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~ 66 (93)
|.+.|+..++ .+.+.|.++++=+.|++..|+..|+....-+-|.|.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd 47 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD 47 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence 4677888877 788999999999999999999999988677777774
No 16
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=89.26 E-value=1.8 Score=27.18 Aligned_cols=42 Identities=29% Similarity=0.352 Sum_probs=36.5
Q ss_pred CCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 16 VDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 16 ~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
..+..+.+.|+.+++ .+.|.|.++++=+.|+++.|+.-|+..
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~ 49 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM 49 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc
Confidence 345779999999966 889999999999999999999999853
No 17
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=88.22 E-value=1.7 Score=28.13 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=42.0
Q ss_pred EEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcc
Q psy11810 23 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80 (93)
Q Consensus 23 ~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~ 80 (93)
-+|...+.+-.|..+..-+=..|.++++...+|.+-. ||+.|.|.+|--.=|--++.
T Consensus 3 fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~ITlssd~e 59 (82)
T cd06397 3 FKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKE 59 (82)
T ss_pred EEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEEEecchHH
Confidence 3566666666666666666678999999999999876 99999998876554444433
No 18
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=87.66 E-value=3.5 Score=24.90 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=41.9
Q ss_pred EEEEEEeCCCeEE-EEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCee
Q psy11810 21 MNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT 73 (93)
Q Consensus 21 ~~~~V~lLD~~~~-~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~ 73 (93)
+.+++..-+.... +.+....+=.+|.+.|.+.+++. ..=|.|.|.|.+|...
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~V 54 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDLV 54 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSEE
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCEE
Confidence 4566666666555 89999999999999999999987 6678999999888543
No 19
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=87.57 E-value=3 Score=25.41 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=45.5
Q ss_pred EEEEEEeCCC-----eEEEEECCCChhhhHHHHHhcccCc-eeeeeeeeE-EecCCCCeecc-ccCccccc
Q psy11810 21 MNVRVTTMDA-----ELEFAIQHTTTGKQLFDQTVKTIGL-REVWFFGLQ-YADSRGDLTWI-KLYKKIHK 83 (93)
Q Consensus 21 ~~~~V~lLD~-----~~~~~v~~~~~G~~Lfd~Vc~~L~L-~E~dYFGL~-y~d~~~~~~WL-dl~K~i~k 83 (93)
..++|..-+. ...+.|++.++.+++...+++.+++ .....|.|. +....+..+=| +-+.|+.-
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i 73 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQI 73 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHH
Confidence 3577777754 3459999999999999999999999 666789996 55555544444 34444443
No 20
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=87.23 E-value=1.8 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=34.7
Q ss_pred EEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 21 ~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.+.|+..+...++++++.++..+|-.++++..++.. +..-|.|
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~-~~~~L~~ 44 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPV-EQQRLIY 44 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEE
Confidence 4577888886778999999999999999999998743 3344544
No 21
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=87.17 E-value=2.7 Score=27.25 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=43.4
Q ss_pred EEEEeCCCeEEEEECC-----CChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCc
Q psy11810 23 VRVTTMDAELEFAIQH-----TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 79 (93)
Q Consensus 23 ~~V~lLD~~~~~~v~~-----~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K 79 (93)
++|..=+....|.++. ...-.+|.++|.+.++|..-.-|.|+|.|.+|.+.=|..+.
T Consensus 3 vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~ 64 (91)
T cd06398 3 VKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDN 64 (91)
T ss_pred EEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHH
Confidence 4555434456688875 57788999999999999877889999999988766555443
No 22
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=86.12 E-value=2.2 Score=25.18 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=31.8
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
|.+.|..+++ ++++++++..+-.+|-+++++..++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~ 38 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCCh
Confidence 4678899966 788999999999999999999988643
No 23
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=85.20 E-value=3.6 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=29.0
Q ss_pred EEEEEeCCCe-EEEEECCCChhhhHHHHHhcccCceee
Q psy11810 22 NVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREV 58 (93)
Q Consensus 22 ~~~V~lLD~~-~~~~v~~~~~G~~Lfd~Vc~~L~L~E~ 58 (93)
.|+|.|.|++ ..+.+.+.-+-++.+..+|+.-||.-.
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~ 39 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPE 39 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CC
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHH
Confidence 5899999885 559999999999999999988776433
No 24
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=84.59 E-value=4.1 Score=26.31 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=37.4
Q ss_pred eEEEEECCCChhhhHHHHHhcccCcee--eeeeeeEEecCCCCeecc
Q psy11810 31 ELEFAIQHTTTGKQLFDQTVKTIGLRE--VWFFGLQYADSRGDLTWI 75 (93)
Q Consensus 31 ~~~~~v~~~~~G~~Lfd~Vc~~L~L~E--~dYFGL~y~d~~~~~~WL 75 (93)
.+.|.+.+...=.+|...|.+++|+.. ..-|.|.|.|.+|.++=|
T Consensus 12 vhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vll 58 (86)
T cd06409 12 VHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLI 58 (86)
T ss_pred EEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEE
Confidence 456888887777899999999999865 479999999988887655
No 25
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=83.81 E-value=1.6 Score=26.78 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=30.4
Q ss_pred eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccc
Q psy11810 31 ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIH 82 (93)
Q Consensus 31 ~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~ 82 (93)
...+.+.++++=.++++++|+++++... -++|.|.++. ||++-|++
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~~k~-----ldlslp~R 53 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHNNKP-----LDLSLPFR 53 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEETTEE-----ESSS-BHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEECCEE-----ecccccee
Confidence 6778999999999999999999997654 6688885422 66666654
No 26
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=83.18 E-value=2.5 Score=26.30 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=34.3
Q ss_pred EEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEe
Q psy11810 22 NVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA 66 (93)
Q Consensus 22 ~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~ 66 (93)
.|+|.|.|+ ...+.+.+..+-+++++..|+.-||.-..| .|...
T Consensus 1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~-~v~~~ 45 (72)
T cd01760 1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECC-DVFLL 45 (72)
T ss_pred CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHE-EEEEe
Confidence 378999988 566999999999999999999888754333 34443
No 27
>smart00455 RBD Raf-like Ras-binding domain.
Probab=83.01 E-value=5.8 Score=24.28 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=34.1
Q ss_pred EEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEec
Q psy11810 23 VRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD 67 (93)
Q Consensus 23 ~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d 67 (93)
|+|.+.|+ ...+.+.+.-+-.++++.+|+.-|| +.+.-.+...+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l-~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL-NPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC-CHHHEEEEEcC
Confidence 78998888 5679999999999999999998887 33333444433
No 28
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=80.93 E-value=9.6 Score=23.31 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=45.0
Q ss_pred EEEEeCC---C-eEEEEECCCChhhhHHHHHhcccCce-eeeeeeeEEecCC--CCeeccccCcccccc
Q psy11810 23 VRVTTMD---A-ELEFAIQHTTTGKQLFDQTVKTIGLR-EVWFFGLQYADSR--GDLTWIKLYKKIHKS 84 (93)
Q Consensus 23 ~~V~lLD---~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~-E~dYFGL~y~d~~--~~~~WLdl~K~i~kQ 84 (93)
++|..-| + ...+.|++.++.+++...+.+.+++. ....|.|.=.-.+ .++.-.+.++|+.-|
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~ 70 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQ 70 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHH
Confidence 3455544 5 45699999999999999999999998 6678999875544 344444566665533
No 29
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=78.86 E-value=8.7 Score=24.60 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=38.2
Q ss_pred EEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCC
Q psy11810 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSR 69 (93)
Q Consensus 21 ~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~ 69 (93)
..++|+.=+ ++-+.+++...=++|.++|+++|+|. .+---|+|.+..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELP-AEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEeccCC
Confidence 567777766 88899999999999999999999995 233678897754
No 30
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=78.19 E-value=8.8 Score=23.26 Aligned_cols=48 Identities=21% Similarity=0.132 Sum_probs=39.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
.....++|++.|| .+.-...+.++-++|++-|-..+...+...|-|.-
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~ 52 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELIT 52 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEe
Confidence 4568899999988 67788889999999999998888877655577754
No 31
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=77.90 E-value=7 Score=22.72 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=34.3
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.+.|..+++ +.++++++..+-.+|=+++.+..|+. .+..-|.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~~ 45 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP-VEQQRLIY 45 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence 4677888965 88899999999999999999998863 33344555
No 32
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=75.71 E-value=16 Score=22.49 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=46.9
Q ss_pred EEEEEeCC---C-eEEEEECCCChhhhHHHHHhcccCcee-eeeeeeEEecCCC-CeeccccCccccccccc
Q psy11810 22 NVRVTTMD---A-ELEFAIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRG-DLTWIKLYKKIHKSTTL 87 (93)
Q Consensus 22 ~~~V~lLD---~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E-~dYFGL~y~d~~~-~~~WLdl~K~i~kQ~~~ 87 (93)
.++|..-+ + ...+.|++.++.++++..+.+..++.. ...|.|.=.-..+ ++.=-+.++|+.-|..-
T Consensus 4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~ 75 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQKLW 75 (90)
T ss_pred EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEehhhC
Confidence 45666654 5 467999999999999999999999976 5677777654233 34434557777665543
No 33
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=75.26 E-value=9 Score=22.91 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=31.7
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
|.+.|..+++ ++.+++++..+-.+|-+++++..|+..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~ 38 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE 38 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 4677888966 778999999999999999999988754
No 34
>KOG3531|consensus
Probab=72.85 E-value=0.12 Score=45.56 Aligned_cols=66 Identities=3% Similarity=-0.247 Sum_probs=53.3
Q ss_pred eEEEEEEeC-CCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEec-CCCCeeccccCcccccccc
Q psy11810 20 EMNVRVTTM-DAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD-SRGDLTWIKLYKKIHKSTT 86 (93)
Q Consensus 20 ~~~~~V~lL-D~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d-~~~~~~WLdl~K~i~kQ~~ 86 (93)
--.+++..+ +++ .+.+++.+.|..+|..+|..++..|.+|||++|.- .-..+.|+|.+++-..|..
T Consensus 177 ~~~l~~~~~~p~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav 244 (1036)
T KOG3531|consen 177 REHLAHTRYLPNQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAV 244 (1036)
T ss_pred ceeeeeeecCchH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHH
Confidence 356777777 556 77778899999999999999999999999999932 2356889999998776643
No 35
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=72.53 E-value=12 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=30.3
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCc
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
|.+.|..+++ ++.+++++..+-.+|-+++++..++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 4677888855 7889999999999999999998886
No 36
>KOG3784|consensus
Probab=70.70 E-value=5.1 Score=32.71 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=38.0
Q ss_pred eEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee--eeeeeeEEec
Q psy11810 20 EMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE--VWFFGLQYAD 67 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E--~dYFGL~y~d 67 (93)
.+...|-+.++ .+++++..+.+..++|..||..|++.. .-||||.-+.
T Consensus 107 ~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr 157 (407)
T KOG3784|consen 107 EVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVR 157 (407)
T ss_pred eeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEe
Confidence 35555666677 678999999999999999999999962 2499998753
No 37
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=67.04 E-value=17 Score=21.24 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=30.8
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ .+.+++++..+-.+|-.++.+..++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~ 37 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC
Confidence 4577888866 78899999999999999999988864
No 38
>PTZ00044 ubiquitin; Provisional
Probab=66.20 E-value=19 Score=21.36 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=31.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ ++.+++++..+-.+|=.++++..|+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~ 37 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID 37 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 4577888966 78899999999999999999999974
No 39
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=65.89 E-value=33 Score=22.13 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=41.4
Q ss_pred EEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeecc
Q psy11810 23 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI 75 (93)
Q Consensus 23 ~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WL 75 (93)
+++..=+..+-+.+++..+=.+|.++|-+--.+.+..-|.+.|.|.+|..+=+
T Consensus 3 ~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~ti 55 (83)
T cd06404 3 VKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTI 55 (83)
T ss_pred EEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceee
Confidence 34444444667888888888889888888888888889999999998876544
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=64.31 E-value=22 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=30.6
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCc
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
|.+.|..+.+ ++.+++++.++-.+|-+++.+..++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i 38 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGV 38 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCC
Confidence 6788999955 7889999999999999999988886
No 41
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=63.39 E-value=38 Score=22.47 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCe-EEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCccccccc
Q psy11810 20 EMNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKST 85 (93)
Q Consensus 20 ~~~~~V~lLD~~-~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~ 85 (93)
...+||---|++ .++.+..+++-+++..++-+...|.+..-+-|.-...+-.+.-.-.+||+.=|.
T Consensus 2 ~y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~Iqk 68 (97)
T cd01775 2 SYCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQK 68 (97)
T ss_pred ceEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHH
Confidence 356788888886 569999999999999999999999876655555554444455445677776553
No 42
>KOG2378|consensus
Probab=61.96 E-value=42 Score=28.42 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=50.9
Q ss_pred ecCCCCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE--ecCCCCeeccccCc
Q psy11810 12 FGHPVDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY--ADSRGDLTWIKLYK 79 (93)
Q Consensus 12 ~~~~~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y--~d~~~~~~WLdl~K 79 (93)
..+-+.+..+.|.|-+.|. .+++.+...+..++++..|.+.++-.|. |-. +++.|++.=|.|+.
T Consensus 227 r~~v~~sDev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~see----l~LV~v~s~GEkv~lqPnd 293 (573)
T KOG2378|consen 227 RCPVRGSDEVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSEE----LILVKVSSSGEKVILQPND 293 (573)
T ss_pred cCCccCCCeeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccccc----eeEEEEccCCceeeecCCc
Confidence 3445566779999999987 5679999999999999999999998773 544 56678877776654
No 43
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=61.90 E-value=23 Score=20.44 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=29.6
Q ss_pred EEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+.++|...+...++++++.++-.+|-+++.+..++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~ 36 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVE 36 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCC
Confidence 356777775578899999999999999999888864
No 44
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=60.29 E-value=33 Score=22.18 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=36.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeE
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 64 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~ 64 (93)
..|+|.+.|+ ...+.|+...+.+++.++.++.-.........|-
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv 47 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV 47 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 5789999988 6779999999999999999988776655555553
No 45
>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C. This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and
Probab=59.83 E-value=6.8 Score=25.86 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHHhcccCceee---eeeeeEEecCCCCeeccccC----cccccc
Q psy11810 46 FDQTVKTIGLREV---WFFGLQYADSRGDLTWIKLY----KKIHKS 84 (93)
Q Consensus 46 fd~Vc~~L~L~E~---dYFGL~y~d~~~~~~WLdl~----K~i~kQ 84 (93)
+..++...+..|+ |.||+.|.++-+.+.||.++ -|++|-
T Consensus 71 is~i~p~A~~~EREi~DmfGi~f~Ghpd~rr~ll~~~~~~~PLrKd 116 (121)
T TIGR01961 71 LTSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKD 116 (121)
T ss_pred hHHhhhcccHHHHHHHhhcCcEeCCCCCCccccCCCCCCCCCcccC
Confidence 5667777777776 69999999998889999773 455543
No 46
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=59.43 E-value=36 Score=20.67 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=30.3
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCc
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
|.+.|..+.+ ..++++++.++-.+|-+++.+..++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~ 37 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKV 37 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCC
Confidence 6788889944 7889999999999999999888775
No 47
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=58.91 E-value=19 Score=22.67 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=29.7
Q ss_pred EEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 22 NVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 22 ~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.|+|.|.|+ ...+.+.+..+=++.+...|+.-||.
T Consensus 1 ~crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~ 36 (73)
T cd01817 1 LCRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN 36 (73)
T ss_pred CcEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence 389999988 45599999888899999999888775
No 48
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=56.26 E-value=30 Score=20.99 Aligned_cols=35 Identities=17% Similarity=-0.020 Sum_probs=29.0
Q ss_pred EEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 22 NVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 22 ~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+.|..-..+++++++..++..+|-+++++..++.
T Consensus 2 ~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp 36 (74)
T cd01813 2 PVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVL 36 (74)
T ss_pred EEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCC
Confidence 45566656688999999999999999999999863
No 49
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=54.94 E-value=47 Score=21.64 Aligned_cols=53 Identities=8% Similarity=0.071 Sum_probs=41.0
Q ss_pred EEEEe--CCC--e-EEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccc
Q psy11810 23 VRVTT--MDA--E-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76 (93)
Q Consensus 23 ~~V~l--LD~--~-~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd 76 (93)
.+|.+ +|+ + -++.|.+.++.+++-.++.+...+.+.+-|||-..- ++..+=|.
T Consensus 2 l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~v-dg~~~qLa 59 (87)
T cd01776 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFV-EETWQQLA 59 (87)
T ss_pred eeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEE-CCcEEEcC
Confidence 35666 666 2 358899999999999999999999999999998763 34444443
No 50
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=53.40 E-value=49 Score=23.80 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=36.2
Q ss_pred EEEEEEeCCC-----eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEe
Q psy11810 21 MNVRVTTMDA-----ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA 66 (93)
Q Consensus 21 ~~~~V~lLD~-----~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~ 66 (93)
|+|-|..+|+ ++.+.++..++-.+|++.+...+...-...+-|.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~ 51 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTN 51 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEe
Confidence 4677888866 677889999999999999999999876554445554
No 51
>PRK12494 NADH dehydrogenase subunit J; Provisional
Probab=52.02 E-value=7.4 Score=27.86 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=26.5
Q ss_pred HHHHhcccCceee---eeeeeEEecCCCCeeccccC
Q psy11810 46 FDQTVKTIGLREV---WFFGLQYADSRGDLTWIKLY 78 (93)
Q Consensus 46 fd~Vc~~L~L~E~---dYFGL~y~d~~~~~~WLdl~ 78 (93)
+..++...+..|+ |.||+.|.++.+.+.||.++
T Consensus 114 It~i~p~A~w~EREi~DmfGI~FeGHPDlRriLlpe 149 (172)
T PRK12494 114 VYWIWKGADWQERETYDMYGINFEGHPNLKRILMPE 149 (172)
T ss_pred hhHhhhcCChHHHHHHHhcCceeCCCCCCccccCCC
Confidence 4566777777776 69999999998889999873
No 52
>KOG3527|consensus
Probab=50.78 E-value=6.3 Score=35.22 Aligned_cols=70 Identities=20% Similarity=0.150 Sum_probs=55.8
Q ss_pred CceEEEEEEeC-CCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecC-CCCeeccccCccccccccc
Q psy11810 18 SYEMNVRVTTM-DAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKIHKSTTL 87 (93)
Q Consensus 18 ~k~~~~~V~lL-D~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLdl~K~i~kQ~~~ 87 (93)
.+.....+... |..-++.+.++..+..++.+|-......+.+||-+++.++ .+.+.|.+..+.+.+++..
T Consensus 381 skt~~s~g~r~~~~~~e~rvpkk~kkek~~~Evt~d~kqE~~~~~s~~~~~k~~~~r~~~~ni~~~~s~L~~ 452 (975)
T KOG3527|consen 381 SKTGLSAGGRVEDGGAEFRVPKKIKKEKLSREVTKDDKQEELQYPSLCFYDKKEGTRVLGYNIKNIHSNLML 452 (975)
T ss_pred cccccccccccccCCcceecccccccccccccccCcccchhccccchhhhccccceeecccccccccccccc
Confidence 34334444444 4466799999999999999999999999999999999776 5689999999888887654
No 53
>PRK07785 NADH dehydrogenase subunit C; Provisional
Probab=49.88 E-value=12 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=34.9
Q ss_pred HHHHhcccCceee---eeeeeEEecCCCCeecccc----CcccccccccCCCCC
Q psy11810 46 FDQTVKTIGLREV---WFFGLQYADSRGDLTWIKL----YKKIHKSTTLATTEV 92 (93)
Q Consensus 46 fd~Vc~~L~L~E~---dYFGL~y~d~~~~~~WLdl----~K~i~kQ~~~~~~~~ 92 (93)
+..|+...+-.|+ |.||+.|.++-+.+.||-+ .-|++|--...|.||
T Consensus 165 It~I~P~A~W~EREvyDmfGI~FeGHPDLRRiLlpddw~ghPLRKDyPl~G~p~ 218 (235)
T PRK07785 165 LVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGGIPV 218 (235)
T ss_pred chhhcccCCchHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCCCcc
Confidence 3455566666666 5999999999888999876 568887766666665
No 54
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=47.39 E-value=74 Score=20.66 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=32.9
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+.+ ++.+++++.++=.+|-+++.+.-|+.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip 64 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP 64 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 359999999955 78899999999999999999887763
No 55
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=46.78 E-value=37 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEECCCChhhhHHHHHhcccCceee
Q psy11810 34 FAIQHTTTGKQLFDQTVKTIGLREV 58 (93)
Q Consensus 34 ~~v~~~~~G~~Lfd~Vc~~L~L~E~ 58 (93)
|.-.=...-+.++..+|+.|||.+.
T Consensus 22 Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 22 FPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceE
Confidence 4333355677899999999999986
No 56
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=45.62 E-value=80 Score=20.25 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=36.3
Q ss_pred EEEEeCCCeEEEEECCC-ChhhhHHHHHhcccCce--eeeeeeeEEecCCCCee
Q psy11810 23 VRVTTMDAELEFAIQHT-TTGKQLFDQTVKTIGLR--EVWFFGLQYADSRGDLT 73 (93)
Q Consensus 23 ~~V~lLD~~~~~~v~~~-~~G~~Lfd~Vc~~L~L~--E~dYFGL~y~d~~~~~~ 73 (93)
+++++=|..-.+.+... ++=.+|.+.|++-.+.. -.+.|.+.|.|++|...
T Consensus 3 iK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlV 56 (81)
T cd06401 3 LKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLI 56 (81)
T ss_pred EEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEE
Confidence 34444344445777764 58889999999887744 45899999999887644
No 57
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=44.95 E-value=62 Score=19.62 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=39.6
Q ss_pred EEEEEeC--C-CeEEEEECCCChhhhHHHHHhcccCceeeee---eeeEEecCCCCeeccccCcccccccccC
Q psy11810 22 NVRVTTM--D-AELEFAIQHTTTGKQLFDQTVKTIGLREVWF---FGLQYADSRGDLTWIKLYKKIHKSTTLA 88 (93)
Q Consensus 22 ~~~V~lL--D-~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dY---FGL~y~d~~~~~~WLdl~K~i~kQ~~~~ 88 (93)
.|+|+.. + ..+++.+..+.+=.+|+..+.+.+++...+. ++.+.....+. =|+.+..+..+=..-
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~--~L~~~~tL~~~gV~d 72 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGR--PLDPDQTLADAGVRD 72 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTE--EEETTSBCGGGT--T
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCc--ccCCcCcHhHcCCCC
Confidence 4666666 4 4788999999999999999999999755442 24444433332 467777777665443
No 58
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=43.73 E-value=55 Score=19.08 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=31.5
Q ss_pred EEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 24 RVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 24 ~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
.|..+++ ++.+++++..+-.++-+++++..|+...+ .-|.|
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~Li~ 43 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQ-LRVIF 43 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHH-eEEEE
Confidence 4677755 88899999999999999999999874432 34444
No 59
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=43.58 E-value=35 Score=17.24 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=28.6
Q ss_pred EEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 25 VTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 25 V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.+-++ ...+.+.+.++-.++.+.+++..++ ....|-|.+
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~-~~~~~~l~~ 42 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGL-PPEQQRLLV 42 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCc-ChHHeEEEE
Confidence 334445 6678888899999999999999883 334445554
No 60
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=42.65 E-value=44 Score=21.32 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=32.5
Q ss_pred EEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeee-eeeEEe
Q psy11810 25 VTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWF-FGLQYA 66 (93)
Q Consensus 25 V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dY-FGL~y~ 66 (93)
|.+.|+ .....|.+.-+-.++++..|..=++.-..| --|.+.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~ 47 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFL 47 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEE
Confidence 666677 677999999999999999999988855544 344444
No 61
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=41.62 E-value=95 Score=19.97 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=34.9
Q ss_pred EEEEEeCC--C--eEE-EEECCCChh--hhHHHHHhcccCceeeeeeeeEEecCCCCeeccc
Q psy11810 22 NVRVTTMD--A--ELE-FAIQHTTTG--KQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76 (93)
Q Consensus 22 ~~~V~lLD--~--~~~-~~v~~~~~G--~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd 76 (93)
.++.-++. + ++. |.++..... .+|.+.|-+........-|.|.|.|.+|-.+=+-
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIs 63 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFS 63 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeec
Confidence 45666662 2 444 888665543 5666666655433333789999999988655443
No 62
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=39.67 E-value=76 Score=21.04 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=25.4
Q ss_pred EEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 23 VRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 23 ~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
++|..-|+ +..+.|..=..|+++...|.+.+|+.+
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 45666677 556999998899999999999999988
No 63
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=39.60 E-value=17 Score=30.52 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=18.6
Q ss_pred CChhhhHHHHHhcccCceeee
Q psy11810 39 TTTGKQLFDQTVKTIGLREVW 59 (93)
Q Consensus 39 ~~~G~~Lfd~Vc~~L~L~E~d 59 (93)
.|+|+|++.++|.|||+.+..
T Consensus 409 eCtG~EIl~ElL~HLg~~~~~ 429 (500)
T PF06100_consen 409 ECTGEEILTELLYHLGFPDDE 429 (500)
T ss_pred hCChHHHHHHHHHhcCCChhh
Confidence 689999999999999997643
No 64
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=39.18 E-value=81 Score=18.45 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=32.5
Q ss_pred EEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 22 NVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 22 ~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
.+.|..+.+..++++++.++-.+|-+++.+..++ ..+-+=|-|
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i-~~~~~~Li~ 44 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKA-NQEQLVLIF 44 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCC-CHHHEEEEE
Confidence 4567777555579999999999999999988885 445555555
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=38.36 E-value=67 Score=17.87 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=29.4
Q ss_pred EEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 25 VTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 25 V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|...++ .+.+.+++.++..+|-+++.+..++.. ...-|.|
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~-~~~~l~~ 42 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPP-EQQRLIY 42 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcCh-HHEEEEE
Confidence 455544 778999999999999999999888533 2344544
No 66
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=38.18 E-value=17 Score=29.90 Aligned_cols=41 Identities=10% Similarity=-0.008 Sum_probs=29.5
Q ss_pred HHHhcccCceee---eeeeeEEecCCCCeeccccC----ccccccccc
Q psy11810 47 DQTVKTIGLREV---WFFGLQYADSRGDLTWIKLY----KKIHKSTTL 87 (93)
Q Consensus 47 d~Vc~~L~L~E~---dYFGL~y~d~~~~~~WLdl~----K~i~kQ~~~ 87 (93)
..|+...+..|+ |.||+.|.++.+.++||.++ -|++|-..+
T Consensus 378 t~I~P~AnW~EREa~DMFGI~FeGHPDLRRILLpddw~GhPLRKDF~~ 425 (430)
T PRK07735 378 TPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDYEP 425 (430)
T ss_pred HHhhccCChHHHHHHHHhCcccCCCCCCccCCCCCCCCCCCCCCCCCC
Confidence 445556666665 69999999998889998764 566655443
No 67
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=37.98 E-value=39 Score=22.87 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.4
Q ss_pred hHHHHHhcccCceeeeeeeeEEecCCCCeeccccC
Q psy11810 44 QLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY 78 (93)
Q Consensus 44 ~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~ 78 (93)
+..+.|.+.|++.+.. +.+.|.+..|.--||.|+
T Consensus 45 ~~~~~v~~~l~~~~~~-~~~~fqS~~g~~~Wl~P~ 78 (135)
T cd00419 45 ETARLVAERLGLPFDE-YELAYQSRFGPGEWLEPS 78 (135)
T ss_pred HHHHHHHHHhCCCCCC-EEEEecCCCCCCCCCCCC
Confidence 3466788888865444 468999888888999875
No 68
>KOG0005|consensus
Probab=36.01 E-value=82 Score=19.49 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=35.5
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceee----eeeeeEEec
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV----WFFGLQYAD 67 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~----dYFGL~y~d 67 (93)
|.++|..|-+ +++++|++..+-..+=+.|-+.-|+.-. -|=|-|..|
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~D 52 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMND 52 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccc
Confidence 4578999955 9999999999998888888888887532 255555533
No 69
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=35.14 E-value=21 Score=30.30 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=17.3
Q ss_pred CChhhhHHHHHhcccCcee
Q psy11810 39 TTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 39 ~~~G~~Lfd~Vc~~L~L~E 57 (93)
.|+|+|++.++|.|||+.+
T Consensus 427 ~CtG~Ei~~E~l~Hl~~~~ 445 (576)
T PRK13977 427 ECTGEEILQELLYHLGVPE 445 (576)
T ss_pred hCCHHHHHHHHHHhcCCch
Confidence 6899999999999999864
No 70
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=34.54 E-value=93 Score=19.99 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=42.2
Q ss_pred CCeEE-EEECCCChhh-hHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCCC
Q psy11810 29 DAELE-FAIQHTTTGK-QLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLATT 90 (93)
Q Consensus 29 D~~~~-~~v~~~~~G~-~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~~ 90 (93)
|++.. |.++++.+|+ +=|-...+++--+...-|-|+|.|..|...=++.+....+-+..+.|
T Consensus 8 daEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~p 71 (80)
T cd06403 8 DAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSANP 71 (80)
T ss_pred CCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcCCC
Confidence 77654 9999886666 22444445555445577899999998876666777777776665544
No 71
>PRK06074 NADH dehydrogenase subunit C; Provisional
Probab=31.42 E-value=29 Score=25.10 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=29.2
Q ss_pred HHHHhcccCceee---eeeeeEEecCCCCeecccc----Ccccccc
Q psy11810 46 FDQTVKTIGLREV---WFFGLQYADSRGDLTWIKL----YKKIHKS 84 (93)
Q Consensus 46 fd~Vc~~L~L~E~---dYFGL~y~d~~~~~~WLdl----~K~i~kQ 84 (93)
+..++...+..|+ |.||+.|.++.+.+.||.+ .-|++|-
T Consensus 101 It~i~p~A~w~EREi~DmfGI~f~GhPdlrrlllpe~w~g~PLRKd 146 (189)
T PRK06074 101 VVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKD 146 (189)
T ss_pred hHHhhhccChHHHHHHHhhCceeCCCCCCccccCCCCCCCCCcccC
Confidence 4556666676665 6999999999899999976 3466654
No 72
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=30.22 E-value=1.2e+02 Score=17.91 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=30.7
Q ss_pred EEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 24 RVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 24 ~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
.|..+.+ ++.+++++.++-.+|=+++.+..|+.. +-+-|.|
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~ 43 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQA-DQFWLSF 43 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCH-HHeEEEE
Confidence 4677855 788999999999999999988888643 3334444
No 73
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=30.06 E-value=1.2e+02 Score=20.60 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=26.6
Q ss_pred CCceeeeeeecCCCCCceEEEEEEeCCCe
Q psy11810 3 HPFNFVTLTFGHPVDSYEMNVRVTTMDAE 31 (93)
Q Consensus 3 ~~~~~~~l~~~~~~~~k~~~~~V~lLD~~ 31 (93)
||+....|.+-+++++..+.+.|..-|+.
T Consensus 4 ~~~~v~~~g~~k~~~h~~Y~i~V~wsdgs 32 (121)
T cd06889 4 HPVDVQGVGVMQKRRHKTYMFSVLWSDGS 32 (121)
T ss_pred ceEEEEEEeeecccceeEEEEEEEEcCCc
Confidence 89999999999999999999999998873
No 74
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=29.99 E-value=79 Score=22.02 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.6
Q ss_pred CCCceeeeeeecCCCCCceEEEEEEeCCC
Q psy11810 2 DHPFNFVTLTFGHPVDSYEMNVRVTTMDA 30 (93)
Q Consensus 2 ~~~~~~~~l~~~~~~~~k~~~~~V~lLD~ 30 (93)
+|||.+++.......+++ +.++|.-+|.
T Consensus 60 ~~P~d~~~~~~~~~gwP~-L~l~V~~~D~ 87 (168)
T PF07162_consen 60 NHPFDLHFKSTNPQGWPQ-LVLQVYSLDS 87 (168)
T ss_pred eccEEEEEEeCCCCCCce-EEEEEEEEcc
Confidence 699999998888877775 6777766654
No 75
>CHL00012 ndhJ NADH dehydrogenase subunit J
Probab=27.05 E-value=35 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=26.7
Q ss_pred HHHhcccCceee---eeeeeEEecCCCCeecccc----Ccccccccc
Q psy11810 47 DQTVKTIGLREV---WFFGLQYADSRGDLTWIKL----YKKIHKSTT 86 (93)
Q Consensus 47 d~Vc~~L~L~E~---dYFGL~y~d~~~~~~WLdl----~K~i~kQ~~ 86 (93)
..+...-+-.|+ |.||+.|.++.+.+.||-+ .-|++|-..
T Consensus 101 ~~i~p~A~w~ERE~~DmfGI~F~GhPdlrrillpedw~g~PLRKD~~ 147 (158)
T CHL00012 101 FWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYI 147 (158)
T ss_pred HHhhhCCChHHHHHHHHcCcccCCCCCCccccCCCCCCCCCCCCCCC
Confidence 344444454444 6999999999888899876 346655433
No 76
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=26.40 E-value=1e+02 Score=17.20 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=26.2
Q ss_pred hhHHHHHhcccCceeeeeeeeEEec--------CCCCeecccc
Q psy11810 43 KQLFDQTVKTIGLREVWFFGLQYAD--------SRGDLTWIKL 77 (93)
Q Consensus 43 ~~Lfd~Vc~~L~L~E~dYFGL~y~d--------~~~~~~WLdl 77 (93)
..++-.+|+.+|+.-+-.+|..-.. ......|++.
T Consensus 13 a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev 55 (68)
T smart00460 13 AALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEV 55 (68)
T ss_pred HHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEE
Confidence 3678899999999999989976542 2456778763
No 77
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=26.18 E-value=1.3e+02 Score=17.01 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=25.8
Q ss_pred eCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 27 TMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 27 lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+++ .+++++.+.++-.+|=+++.+..++.
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~ 32 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIP 32 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTST
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccccccc
Confidence 3555 78899999999999999999999953
No 78
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=24.99 E-value=1.1e+02 Score=22.27 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=22.5
Q ss_pred EEEEEeC-CC-----eEEEEECCCChhhhHHHHHhcccCceee
Q psy11810 22 NVRVTTM-DA-----ELEFAIQHTTTGKQLFDQTVKTIGLREV 58 (93)
Q Consensus 22 ~~~V~lL-D~-----~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~ 58 (93)
.++|..+ ++ ++++.+.+.++=++|++.+.+.+++.|.
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~ 62 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEE 62 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcC
Confidence 4555556 33 3678899999999999999999988654
No 79
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=22.01 E-value=1.9e+02 Score=17.38 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=29.1
Q ss_pred EEEEEEeCC-CeEEEEECCCChhhhHHHHHhcccCc
Q psy11810 21 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 21 ~~~~V~lLD-~~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
|.+.|..+- ..+.+++++.++=.+|-+++.+.-++
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~ 37 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT 37 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 677888884 47888999999999999999887774
No 80
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=22.01 E-value=1.1e+02 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=22.4
Q ss_pred EEeCCCe-EE--EEECCCChhhhHHHHHhcccCcee
Q psy11810 25 VTTMDAE-LE--FAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 25 V~lLD~~-~~--~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
|.-++.. +| ++++....|++.|..+.+.+|+.-
T Consensus 134 ~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~ 169 (180)
T cd07762 134 SLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPY 169 (180)
T ss_pred cEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCc
Confidence 4445442 44 555555679999999999998753
No 81
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=21.71 E-value=74 Score=19.54 Aligned_cols=27 Identities=11% Similarity=0.350 Sum_probs=18.1
Q ss_pred EEECCCChhhhHHHHHhcccCceeeeeee
Q psy11810 34 FAIQHTTTGKQLFDQTVKTIGLREVWFFG 62 (93)
Q Consensus 34 ~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFG 62 (93)
++...=.+-.++++.+-+.|++. +|||
T Consensus 3 idg~~i~~~~~~~~~l~~~l~fP--~yfG 29 (90)
T PF01337_consen 3 IDGRKIRDKEDFYDALAEALDFP--DYFG 29 (90)
T ss_dssp EECCC-SSHHHHHHHHHHHTT----TTSS
T ss_pred EeCCCCCCHHHHHHHHHHHcCCC--chhc
Confidence 44444455678899999999887 7888
No 82
>KOG4261|consensus
Probab=21.20 E-value=63 Score=29.08 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=37.7
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeE
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 64 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~ 64 (93)
+....+|.+||+ +-.+-++-.-.+.+|.=-||+..||.+.+-.+|-
T Consensus 83 k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslv 129 (1003)
T KOG4261|consen 83 KQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLV 129 (1003)
T ss_pred hcccceeeecccccceeeecccccHHHHHHHHHhccCccchhhhhhh
Confidence 345678999998 5568888888999999999999999887766664
No 83
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=20.05 E-value=2.1e+02 Score=16.98 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.3
Q ss_pred EEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 24 RVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 24 ~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+|+++.+ ++.+++++.++=.+|=.++.+..|+.
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~ 35 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD 35 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC
Confidence 5788844 88899999999999988888887763
Done!