Query psy11810
Match_columns 93
No_of_seqs 117 out of 467
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:36:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h4r_A Merlin; FERM, neurofibr 99.7 5.6E-18 1.9E-22 126.5 6.8 82 6-91 11-92 (314)
2 1ef1_A Moesin; membrane, FERM 99.7 3.4E-17 1.1E-21 121.0 7.9 72 20-91 1-72 (294)
3 3qij_A Protein 4.1; cytoskelet 99.7 2.7E-17 9.2E-22 123.1 4.8 69 18-86 15-84 (296)
4 2i1j_A Moesin; FERM, coiled-co 99.6 2E-16 6.9E-21 128.4 7.8 74 18-91 2-75 (575)
5 3ivf_A Talin-1; FERM domain, c 99.5 8.2E-14 2.8E-18 106.3 6.2 69 18-86 83-156 (371)
6 2al6_A Focal adhesion kinase 1 99.2 1.9E-11 6.5E-16 93.9 4.2 65 21-85 8-78 (375)
7 2j0j_A Focal adhesion kinase 1 99.1 2.6E-11 8.9E-16 98.2 4.8 62 22-83 9-76 (656)
8 3pvl_A Myosin VIIA isoform 1; 98.9 1.3E-09 4.3E-14 89.7 6.1 52 18-69 261-313 (655)
9 3au4_A Myosin-X; protein-prote 98.9 1.7E-09 5.9E-14 86.2 6.7 65 18-83 214-280 (555)
10 4dxa_B KREV interaction trappe 98.5 6E-08 2E-12 72.7 3.2 67 20-90 5-89 (322)
11 4eku_A Protein-tyrosine kinase 98.3 1.1E-06 3.9E-11 68.3 5.5 68 19-86 20-99 (392)
12 2kc2_A Talin-1, F1; FERM, adhe 96.8 0.0037 1.3E-07 42.3 6.6 72 19-90 10-115 (128)
13 1vd2_A Protein kinase C, IOTA 95.9 0.04 1.4E-06 34.9 6.9 56 18-73 4-59 (89)
14 2al3_A TUG long isoform; TUG U 94.2 0.031 1.1E-06 35.7 2.8 59 18-82 7-66 (90)
15 3dbh_I NEDD8; cell cycle, acti 91.1 0.69 2.4E-05 27.2 5.6 50 15-65 7-57 (88)
16 3a4r_A Nfatc2-interacting prot 90.4 0.74 2.5E-05 27.6 5.4 43 15-57 2-46 (79)
17 1wgr_A Growth factor receptor- 90.3 1.1 3.9E-05 28.7 6.4 50 15-64 4-54 (100)
18 1wm3_A Ubiquitin-like protein 88.5 0.93 3.2E-05 26.5 4.7 36 21-56 2-38 (72)
19 3dad_A FH1/FH2 domain-containi 87.6 0.3 1E-05 37.6 2.6 63 19-84 14-91 (339)
20 2io1_B Small ubiquitin-related 87.6 1 3.4E-05 28.0 4.6 38 19-56 6-44 (94)
21 3v6c_B Ubiquitin; structural g 87.4 1.7 5.9E-05 26.0 5.5 43 14-56 11-54 (91)
22 1wz0_A Ubiquitin-like protein 87.3 1.6 5.5E-05 27.7 5.6 39 18-56 22-61 (104)
23 2io0_B Small ubiquitin-related 87.0 1.2 4.2E-05 27.5 4.8 38 19-56 4-42 (91)
24 2d07_B Ubiquitin-like protein 86.6 1.4 4.8E-05 27.2 4.9 41 17-57 14-55 (93)
25 3mtn_B UBA80, ubcep1, ubiquiti 85.9 1.7 5.9E-05 25.1 4.8 37 20-56 3-40 (85)
26 2pjh_A Protein NPL4, nuclear p 85.7 0.36 1.2E-05 29.3 1.7 46 19-65 3-48 (80)
27 2dzi_A Ubiquitin-like protein 85.7 3.2 0.00011 23.7 5.9 47 18-65 5-52 (81)
28 2k8h_A Small ubiquitin protein 85.1 2.5 8.5E-05 27.2 5.6 39 18-56 24-63 (110)
29 1oey_A P67-PHOX, neutrophil cy 85.0 4.4 0.00015 25.1 6.6 48 19-68 4-51 (83)
30 1wyw_B Ubiquitin-like protein 84.6 1.9 6.4E-05 26.4 4.7 40 17-56 18-58 (97)
31 1ndd_A NEDD8, protein (ubiquit 84.3 1.6 5.4E-05 24.6 4.0 44 21-65 1-45 (76)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 84.3 2.9 9.9E-05 24.4 5.3 46 19-65 6-52 (87)
33 2uyz_B Small ubiquitin-related 84.1 2.1 7.3E-05 24.6 4.6 37 20-56 3-40 (79)
34 1q1o_A Cell division control p 83.9 2.1 7.3E-05 27.4 4.9 53 21-73 6-70 (98)
35 3phx_B Ubiquitin-like protein 83.9 2.6 8.9E-05 24.3 5.0 38 19-56 3-41 (79)
36 1yqb_A Ubiquilin 3; structural 83.8 2.6 8.9E-05 26.0 5.2 55 10-65 12-66 (100)
37 4dwf_A HLA-B-associated transc 83.5 2.7 9.4E-05 24.8 5.0 38 19-56 4-42 (90)
38 3a9j_A Ubiquitin; protein comp 83.1 2.1 7E-05 24.1 4.2 44 21-65 1-45 (76)
39 1ttn_A DC-UBP, dendritic cell- 82.6 3.5 0.00012 25.5 5.5 41 16-56 19-60 (106)
40 3n3k_B Ubiquitin; hydrolase, p 82.4 1.4 4.9E-05 25.5 3.4 37 20-56 3-40 (85)
41 2hj8_A Interferon-induced 17 k 82.3 3.7 0.00013 24.4 5.3 38 19-56 3-41 (88)
42 2eke_C Ubiquitin-like protein 81.9 3.2 0.00011 26.5 5.1 39 17-56 28-67 (106)
43 4eew_A Large proline-rich prot 79.9 4.5 0.00015 23.7 5.1 39 18-56 15-54 (88)
44 1yx5_B Ubiquitin; proteasome, 79.5 3.2 0.00011 25.1 4.3 36 21-56 1-37 (98)
45 3k9o_B Ubiquitin, UBB+1; E2-25 79.1 3.1 0.00011 24.8 4.2 36 21-56 2-38 (96)
46 2bye_A Phospholipase C, epsilo 78.2 1.9 6.5E-05 28.3 3.1 49 16-64 5-59 (110)
47 2faz_A Ubiquitin-like containi 78.1 4.9 0.00017 22.9 4.7 45 20-65 2-49 (78)
48 4hcn_B Polyubiquitin, ubiquiti 77.0 3.8 0.00013 24.9 4.2 40 17-56 19-59 (98)
49 3kyd_D Small ubiquitin-related 76.6 4.5 0.00015 26.4 4.6 39 18-56 38-77 (115)
50 1wgy_A RAP guanine nucleotide 76.5 6.8 0.00023 25.3 5.4 62 16-78 5-67 (104)
51 3vdz_A Ubiquitin-40S ribosomal 76.2 5.8 0.0002 24.8 5.0 39 18-56 33-72 (111)
52 1wf9_A NPL4 family protein; be 74.5 6.8 0.00023 24.4 5.0 36 21-56 8-44 (107)
53 1wx8_A Riken cDNA 4931431F19; 74.4 8.1 0.00028 23.1 5.2 39 18-56 15-53 (96)
54 4fbj_B NEDD8; effector-HOST ta 74.0 5.3 0.00018 23.7 4.2 36 21-56 1-37 (88)
55 1sif_A Ubiquitin; hydrophobic 73.3 5.8 0.0002 23.6 4.3 37 20-56 9-46 (88)
56 3b08_A Polyubiquitin-C, ubiqui 73.0 15 0.0005 23.2 6.4 59 19-83 75-134 (152)
57 2ojr_A Ubiquitin; lanthide-bin 71.4 8.5 0.00029 23.9 4.9 38 19-56 34-72 (111)
58 1wx7_A Ubiquilin 3; ubiquitin- 70.7 9.1 0.00031 23.5 4.9 39 18-56 15-53 (106)
59 2wyq_A HHR23A, UV excision rep 70.5 12 0.00042 21.4 5.2 34 19-52 4-38 (85)
60 2kzr_A Ubiquitin thioesterase 70.4 3.6 0.00012 24.5 2.8 44 21-65 1-45 (86)
61 4gmv_A RAS-associated and plec 69.5 7.8 0.00027 28.7 5.0 45 19-63 30-75 (281)
62 2kk8_A Uncharacterized protein 69.4 13 0.00044 22.0 5.2 47 18-65 8-55 (84)
63 3ivf_A Talin-1; FERM domain, c 68.7 13 0.00044 27.6 6.1 64 20-83 3-70 (371)
64 1wy8_A NP95-like ring finger p 68.0 15 0.00052 21.3 5.4 38 19-56 6-46 (89)
65 2bwf_A Ubiquitin-like protein 67.8 13 0.00045 20.7 4.8 43 21-65 5-48 (77)
66 2klc_A Ubiquilin-1; ubiquitin- 65.3 15 0.0005 22.5 5.0 39 18-56 23-61 (101)
67 2dhz_A RAP guanine nucleotide 65.0 7.7 0.00026 25.6 3.8 61 17-77 6-72 (120)
68 2kan_A Uncharacterized protein 64.5 19 0.00064 21.7 5.3 39 18-56 13-51 (94)
69 2l76_A Nfatc2-interacting prot 64.0 20 0.00068 22.7 5.4 40 17-56 18-57 (95)
70 3b08_A Polyubiquitin-C, ubiqui 63.7 11 0.00036 23.9 4.2 36 21-56 1-37 (152)
71 2kdi_A Ubiquitin, vacuolar pro 63.1 12 0.00042 23.4 4.4 39 18-56 7-46 (114)
72 2daj_A KIAA0977 protein, COBL- 62.4 26 0.00091 22.1 5.7 62 18-82 8-70 (91)
73 1v2y_A 3300001G02RIK protein; 62.2 11 0.00039 23.8 4.1 38 19-56 6-44 (105)
74 2jxx_A Nfatc2-interacting prot 61.6 25 0.00087 21.9 5.6 41 17-57 22-64 (97)
75 1j8c_A Ubiquitin-like protein 59.4 20 0.00068 22.9 5.0 39 18-56 30-68 (125)
76 3u30_A Ubiquitin, linear DI-ub 56.8 22 0.00077 23.3 5.0 39 18-56 18-57 (172)
77 3m62_B UV excision repair prot 55.1 13 0.00044 22.9 3.4 36 21-56 2-38 (106)
78 1wia_A Hypothetical ubiquitin- 54.6 31 0.0011 20.4 5.1 35 19-53 6-41 (95)
79 3q3f_A Ribonuclease/ubiquitin 54.3 25 0.00087 24.4 5.1 39 18-56 103-142 (189)
80 1uel_A HHR23B, UV excision rep 53.9 23 0.00078 21.1 4.3 33 21-53 1-34 (95)
81 3rt3_B Ubiquitin-like protein 53.4 29 0.00099 22.3 5.1 38 19-56 80-118 (159)
82 1pqs_A Cell division control p 53.4 10 0.00035 22.9 2.6 43 31-73 3-49 (77)
83 2l7r_A Ubiquitin-like protein 53.2 19 0.00065 21.5 3.9 46 18-65 17-62 (93)
84 3b1l_X E3 ubiquitin-protein li 57.4 3 0.0001 23.7 0.0 36 21-56 1-37 (76)
85 1we6_A Splicing factor, putati 52.0 25 0.00084 21.6 4.4 38 19-56 26-68 (111)
86 3hk0_A Growth factor receptor- 51.3 36 0.0012 24.7 5.7 46 19-64 7-53 (256)
87 2dzm_A FAS-associated factor 1 50.4 43 0.0015 20.8 5.5 38 19-56 8-45 (100)
88 3l0w_B Monoubiquitinated proli 49.1 24 0.00082 23.7 4.2 36 21-56 1-37 (169)
89 3uf8_A Ubiquitin-like protein 48.8 28 0.00097 24.1 4.7 40 17-57 18-58 (209)
90 1uh6_A Ubiquitin-like 5; beta- 48.4 41 0.0014 21.0 5.0 40 17-56 25-65 (100)
91 3pge_A SUMO-modified prolifera 47.8 34 0.0012 24.1 5.0 38 18-56 27-65 (200)
92 2c5l_C Phosphoinositide-specif 47.4 34 0.0012 22.3 4.6 39 18-56 5-46 (117)
93 2ktr_A Sequestosome-1; autopha 46.3 41 0.0014 21.9 4.8 62 20-82 20-99 (117)
94 3rt3_B Ubiquitin-like protein 46.2 29 0.001 22.3 4.2 36 21-56 3-39 (159)
95 3tix_A Ubiquitin-like protein 45.4 35 0.0012 24.5 4.7 39 18-57 55-94 (207)
96 1v86_A DNA segment, CHR 7, way 42.4 53 0.0018 19.6 4.9 37 19-55 16-52 (95)
97 2kd0_A LRR repeats and ubiquit 41.6 52 0.0018 19.2 5.0 40 17-56 9-48 (85)
98 3tca_A Amyloid beta A4 precurs 41.0 46 0.0016 23.0 4.8 45 19-63 33-78 (291)
99 3plu_A Ubiquitin-like modifier 39.5 65 0.0022 20.0 4.8 42 15-56 16-58 (93)
100 2kkc_A Sequestosome-1; P62, PB 38.8 62 0.0021 20.4 4.7 62 20-82 5-84 (102)
101 3u5e_m 60S ribosomal protein L 38.1 6.7 0.00023 25.1 0.0 36 21-56 1-37 (128)
102 1wgg_A Ubiquitin carboxyl-term 35.1 73 0.0025 19.1 5.2 38 19-56 6-44 (96)
103 1wju_A NEDD8 ultimate buster-1 34.8 83 0.0028 19.6 5.0 48 18-66 13-65 (100)
104 2bps_A YUKD protein; ubiquitin 34.1 78 0.0027 19.1 4.7 38 20-57 4-44 (81)
105 1ip9_A BEM1 protein; ubiquitin 33.9 85 0.0029 19.4 5.4 38 19-56 11-48 (85)
106 3ai5_A Yeast enhanced green fl 33.6 75 0.0026 23.7 5.2 39 18-56 231-270 (307)
107 1wgh_A Ubiquitin-like 3, HCG-1 33.6 92 0.0032 19.8 5.1 35 18-52 14-49 (116)
108 1wmh_B Partitioning defective- 33.4 85 0.0029 19.3 4.6 61 29-90 14-77 (86)
109 3i9v_5 NADH-quinone oxidoreduc 33.2 8.3 0.00028 27.4 -0.2 34 59-92 120-157 (207)
110 1v5o_A 1700011N24RIK protein; 33.0 80 0.0027 18.9 5.8 38 19-56 6-48 (102)
111 3vpp_A C-type lectin domain fa 31.7 84 0.0029 18.7 5.0 26 52-77 57-82 (132)
112 4dbg_A Ranbp-type and C3HC4-ty 31.3 99 0.0034 19.4 6.2 46 21-66 25-76 (105)
113 1v5t_A 8430435I17RIK protein; 31.2 43 0.0015 19.7 2.9 38 19-56 6-44 (90)
114 2gow_A HCG-1 protein, ubiquiti 29.4 1.1E+02 0.0039 19.6 4.9 34 19-52 16-50 (125)
115 3jyu_A Ubiquitin carboxyl-term 29.1 86 0.0029 21.9 4.6 39 32-70 154-192 (231)
116 1wxa_A Afadin, AF-6 protein; R 27.8 83 0.0028 20.0 4.0 37 31-67 25-63 (116)
117 3u5c_f 40S ribosomal protein S 27.5 13 0.00044 24.9 0.0 35 21-55 1-36 (152)
118 1wgd_A Homocysteine-responsive 27.4 96 0.0033 18.0 4.2 37 19-55 6-47 (93)
119 3cf6_E RAP guanine nucleotide 25.7 2.7E+02 0.0091 22.6 7.9 57 15-73 347-404 (694)
120 2l05_A Serine/threonine-protei 25.3 1.3E+02 0.0045 18.9 4.7 36 20-55 17-53 (95)
121 3u30_A Ubiquitin, linear DI-ub 23.6 1.5E+02 0.0053 19.1 5.4 38 19-56 95-133 (172)
122 3v7o_A Minor nucleoprotein VP3 23.4 17 0.00058 26.5 0.0 38 18-56 19-57 (227)
123 1wxv_A BAG-family molecular ch 22.8 1.2E+02 0.0041 17.5 5.2 38 19-56 6-48 (92)
124 1we7_A SF3A1 protein; structur 22.5 1.4E+02 0.0048 18.2 5.2 38 19-56 24-72 (115)
125 2lxa_A Ubiquitin-like protein 22.4 90 0.0031 18.6 3.2 35 21-55 2-40 (87)
126 2dzk_A UBX domain-containing p 21.4 1.5E+02 0.0052 18.2 5.3 38 18-55 11-49 (109)
127 1wj6_A KIAA0049 protein, RSGI 21.4 1.7E+02 0.0057 18.6 6.9 56 17-75 11-68 (101)
128 2bkf_A Zinc-finger protein NBR 21.2 1.6E+02 0.0053 18.2 6.7 55 19-76 5-61 (87)
129 4a3p_A Ubiquitin carboxyl-term 20.9 1E+02 0.0036 21.2 3.7 26 32-57 142-167 (217)
No 1
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.72 E-value=5.6e-18 Score=126.50 Aligned_cols=82 Identities=39% Similarity=0.721 Sum_probs=66.9
Q ss_pred eeeeeeecCCCCCceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCccccccc
Q psy11810 6 NFVTLTFGHPVDSYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKST 85 (93)
Q Consensus 6 ~~~~l~~~~~~~~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~ 85 (93)
.++.|+.+. ++.+.|+|.++|+++++.++++++|++|++.||++|||.|.+||||+|. .++..+||+++++|.+|.
T Consensus 11 ~~~~~~~~~---~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 11 SFSSLKRKQ---PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp -------------CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGGSS
T ss_pred ccccccCCC---CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHHcC
Confidence 344555443 5889999999999999999999999999999999999999999999999 788999999999999997
Q ss_pred ccCCCC
Q psy11810 86 TLATTE 91 (93)
Q Consensus 86 ~~~~~~ 91 (93)
...++|
T Consensus 87 ~~~~~~ 92 (314)
T 1h4r_A 87 VSKEEP 92 (314)
T ss_dssp CCCSSS
T ss_pred CCCCCC
Confidence 655444
No 2
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.70 E-value=3.4e-17 Score=120.96 Aligned_cols=72 Identities=67% Similarity=1.017 Sum_probs=66.2
Q ss_pred eEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCCCC
Q psy11810 20 EMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLATTE 91 (93)
Q Consensus 20 ~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~~~ 91 (93)
++.|+|.++|+++++.++++++|++++++||++|||.|.+||||.|.+.++..+|||++++|++|.....+|
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~ 72 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESP 72 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSS
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999996544443
No 3
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.67 E-value=2.7e-17 Score=123.11 Aligned_cols=69 Identities=23% Similarity=0.439 Sum_probs=63.3
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccc
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTT 86 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~ 86 (93)
.+.+.|+|.+||+ +.++.|+++++|++|+++||++|||.|.+||||+|.+.++..+|||++|+|++|..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~ 84 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVR 84 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC-
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcC
Confidence 4668999999987 78899999999999999999999999999999999998899999999999999974
No 4
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.65 E-value=2e-16 Score=128.40 Aligned_cols=74 Identities=76% Similarity=1.145 Sum_probs=68.1
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCCCC
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLATTE 91 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~~~ 91 (93)
++.+.|+|.++|++++|.|+++++|++||+.||++|||.|.+||||+|.+.++..+||+++++|++|....++|
T Consensus 2 ~k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~ 75 (575)
T 2i1j_A 2 PKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 75 (575)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSS
T ss_pred CceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999996555444
No 5
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.45 E-value=8.2e-14 Score=106.26 Aligned_cols=69 Identities=10% Similarity=0.213 Sum_probs=58.3
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecC----CCCeeccccCcccccccc
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS----RGDLTWIKLYKKIHKSTT 86 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~----~~~~~WLdl~K~i~kQ~~ 86 (93)
.+.+.|+|.++|+ ..++.++.+++|+++++.||++|||.|.+||||.+.+. ++...||+++|++++|..
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 3568999999988 66799999999999999999999999999999999764 678999999999999964
No 6
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.15 E-value=1.9e-11 Score=93.89 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=58.2
Q ss_pred EEEEEEeCCC-----eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecC-CCCeeccccCccccccc
Q psy11810 21 MNVRVTTMDA-----ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKIHKST 85 (93)
Q Consensus 21 ~~~~V~lLD~-----~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLdl~K~i~kQ~ 85 (93)
-.|+|.++|+ ..+|.++.+++|++|++.||++|||.|.+||||++.+. .+..+||+++++|++|+
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~ 78 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVR 78 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHH
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhh
Confidence 4667888876 67799999999999999999999999999999999875 67899999999998775
No 7
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.14 E-value=2.6e-11 Score=98.18 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=56.4
Q ss_pred EEEEEeCCCe-----EEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecC-CCCeeccccCccccc
Q psy11810 22 NVRVTTMDAE-----LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKIHK 83 (93)
Q Consensus 22 ~~~V~lLD~~-----~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLdl~K~i~k 83 (93)
.|+|.+.+++ .++.++.++++++|++.||++|+|.|++||||+|.+. .++.+||+++++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 5668777764 5699999999999999999999999999999999877 689999999999999
No 8
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=98.92 E-value=1.3e-09 Score=89.70 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=47.5
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCC
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSR 69 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~ 69 (93)
.+.+.|+|.++|+ ..+|.|+.+++|+++++.||+++||.|.+||||.|...+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~d 313 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFD 313 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETT
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCC
Confidence 4679999999988 678999999999999999999999999999999997553
No 9
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=98.92 E-value=1.7e-09 Score=86.21 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=56.4
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee-eeeeeeEEecCCCCeeccccCccccc
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRGDLTWIKLYKKIHK 83 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLdl~K~i~k 83 (93)
.+.+.|+|.++|+ ..++.++.+++|++|++.||+++||.| .+||||.+.+ .+..+||++++.|.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~-~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYN-GHVDKAIESRTVVAD 280 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEES-SSCEEECCTTSBHHH
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEe-CCeeEecCCCCchhH
Confidence 4568999999988 678999999999999999999999998 7899998764 566789988877654
No 10
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=98.49 E-value=6e-08 Score=72.73 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=55.0
Q ss_pred eEEEEEEeCCC-eEEEEECC--CChhhhHHHHHhcccCce--eeeeeeeEEecCCCC-------------eeccccCccc
Q psy11810 20 EMNVRVTTMDA-ELEFAIQH--TTTGKQLFDQTVKTIGLR--EVWFFGLQYADSRGD-------------LTWIKLYKKI 81 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~--~~~G~~Lfd~Vc~~L~L~--E~dYFGL~y~d~~~~-------------~~WLdl~K~i 81 (93)
.+.|+|.++|+ ...++++. +++|+++ |+.+||. +.+||||.+.++..+ ..|.++.+++
T Consensus 5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~~l~~~ 80 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAEL 80 (322)
T ss_dssp CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHHHHHHH
T ss_pred ceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCccccccCccccHHHHHHHHHHHHHHh
Confidence 47899999988 67799998 9999999 5678876 789999999886543 6899999999
Q ss_pred ccccccCCC
Q psy11810 82 HKSTTLATT 90 (93)
Q Consensus 82 ~kQ~~~~~~ 90 (93)
.+|.....+
T Consensus 81 ~~~~~~~~~ 89 (322)
T 4dxa_B 81 TNLDPQRET 89 (322)
T ss_dssp CSCCCCCCC
T ss_pred cCCCCCCCc
Confidence 988554433
No 11
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=68.32 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=56.9
Q ss_pred ceEEEEEEe------CCC-eEEEEECCCChhhhHHHHHh--cccC--ceeeeeeeeEEec-CCCCeeccccCcccccccc
Q psy11810 19 YEMNVRVTT------MDA-ELEFAIQHTTTGKQLFDQTV--KTIG--LREVWFFGLQYAD-SRGDLTWIKLYKKIHKSTT 86 (93)
Q Consensus 19 k~~~~~V~l------LD~-~~~~~v~~~~~G~~Lfd~Vc--~~L~--L~E~dYFGL~y~d-~~~~~~WLdl~K~i~kQ~~ 86 (93)
..-..+|.+ ||+ ...+.++.+++.+++++.|| ..+| +.+.+||||++.+ ..+..+||+++++|++|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~~ 99 (392)
T 4eku_A 20 DVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQD 99 (392)
T ss_dssp GEEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHHHH
T ss_pred eeeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHHHh
Confidence 345667888 777 45699999999999999999 6777 4799999999965 4678999999999999864
No 12
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.84 E-value=0.0037 Score=42.26 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=54.7
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecC-----------------------------
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS----------------------------- 68 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~----------------------------- 68 (93)
+.-..+|++||+ ..++.|+...+-.++-..||+.+||.-.+=|+|.....
T Consensus 10 k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 10 HMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred CCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 344889999998 67799999888888888899999997433358876432
Q ss_pred ----CCCeeccccCcccccccccCCC
Q psy11810 69 ----RGDLTWIKLYKKIHKSTTLATT 90 (93)
Q Consensus 69 ----~~~~~WLdl~K~i~kQ~~~~~~ 90 (93)
++...|||..+.|..|=...++
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCC
Confidence 2234899999999988766543
No 13
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.87 E-value=0.04 Score=34.95 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=49.3
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCee
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT 73 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~ 73 (93)
+..+.+++..-+..+.+.+++..+=++|.++|.+.+.+.+.+=|.+.|.|.+|..+
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCE
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcc
Confidence 45588999988878889999999999999999999999888899999999877654
No 14
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.23 E-value=0.031 Score=35.68 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=43.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccc
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIH 82 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~ 82 (93)
++.|.+.|...++ ...+.+.++++=.++++++|+++|+. .+-++|.|.++. ||+.-+++
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~-~~~~~Lkh~~k~-----lDLSlpfR 66 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN-PSEYDLKFQRTV-----LDLSLQWR 66 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC-GGGCEEEETTEE-----ESSSCBHH
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC-hhhCeEEeCCEe-----ccccceeE
Confidence 3446777777766 78899999999999999999999994 556699985421 45555443
No 15
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=91.06 E-value=0.69 Score=27.21 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 15 PVDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 15 ~~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
......|.+.|..+++ ++.+++++.++-.+|-.++++..++. .+..=|.|
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip-~~~qrL~~ 57 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP-PQQQRLIY 57 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC-GGGCCEEE
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC-HHHEEEEE
Confidence 3445679999999966 78899999999999999999999874 23334444
No 16
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.44 E-value=0.74 Score=27.57 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=36.9
Q ss_pred CCCCceEEEEEEeCCC--eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 15 PVDSYEMNVRVTTMDA--ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 15 ~~~~k~~~~~V~lLD~--~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
|..+..+.++|...++ ++.|.|.+.++=+.|++..|+..|+.-
T Consensus 2 p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~ 46 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG 46 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT
T ss_pred CCCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 4455669999999966 689999999999999999999999853
No 17
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=90.32 E-value=1.1 Score=28.70 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=41.5
Q ss_pred CCCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeE
Q psy11810 15 PVDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 64 (93)
Q Consensus 15 ~~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~ 64 (93)
.++.+...|+|-..|+ ...+.|++..+.+++.+..+...++.....+.|.
T Consensus 4 ~~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv 54 (100)
T 1wgr_A 4 GSSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV 54 (100)
T ss_dssp CCCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred cccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence 3455668999999988 6779999999999999999999888766666654
No 18
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=88.51 E-value=0.93 Score=26.50 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=32.6
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+.++|...++ ++.|.|.+.++=+.|++..|+..|+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~ 38 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 38 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 6788998877 79999999999999999999999974
No 19
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=87.62 E-value=0.3 Score=37.61 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=45.3
Q ss_pred ceEEEEEEeC-CC-eE------------EEEECCCChhhhHHHHHhcccCcee-eeeeeeEEecCCCCeeccccCccccc
Q psy11810 19 YEMNVRVTTM-DA-EL------------EFAIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRGDLTWIKLYKKIHK 83 (93)
Q Consensus 19 k~~~~~V~lL-D~-~~------------~~~v~~~~~G~~Lfd~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLdl~K~i~k 83 (93)
..+.|||+.| |+ -+ .++.+.+..=.+.+..||+.+++.. .+.+-|||.+. + .+|+++..+..
T Consensus 14 ~~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~-~--~Yl~~~~~l~~ 90 (339)
T 3dad_A 14 SVVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPS-G--YYLDTELSLEE 90 (339)
T ss_dssp CEEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTT-C--CBCCTTSCTTT
T ss_pred ceeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCC-C--Ceeccccchhh
Confidence 4699999999 44 22 1334445555667789999999998 78999999653 3 58998876654
Q ss_pred c
Q psy11810 84 S 84 (93)
Q Consensus 84 Q 84 (93)
|
T Consensus 91 q 91 (339)
T 3dad_A 91 Q 91 (339)
T ss_dssp T
T ss_pred h
Confidence 3
No 20
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=87.61 E-value=1 Score=28.04 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.4
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..+.++|...++ ++.|.|.+.++=+.|++..|+..|+.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~ 44 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 44 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 458999999977 79999999999999999999999974
No 21
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=87.40 E-value=1.7 Score=26.00 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=36.9
Q ss_pred CCCCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 14 HPVDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 14 ~~~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+..+..|.+.|..+++ ++.+++++.++-.+|=.++++..|+.
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 54 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP 54 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 44456779999999966 88899999999999999999998874
No 22
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.32 E-value=1.6 Score=27.73 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=35.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..+.++|...++ ++.|.|.+.++=+.|++..|++.|+.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~ 61 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 61 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC
Confidence 4569999999977 78999999999999999999999974
No 23
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=86.97 E-value=1.2 Score=27.53 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.3
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..+.++|...++ ++.|.|.+.++=+.|++..|+..|+.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~ 42 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 42 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 458999999977 79999999999999999999999974
No 24
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=86.61 E-value=1.4 Score=27.18 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
.+..+.++|...++ ++.|.|.+.++=+.|++..|+..|+.-
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 55 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 55 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence 34568999998877 789999999999999999999999853
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=85.93 E-value=1.7 Score=25.09 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=33.1
Q ss_pred eEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 20 EMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.|.+.|..+++ ++++++++.++-.+|-+++++..++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 40 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 40 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 58899999966 78899999999999999999999874
No 26
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=85.71 E-value=0.36 Score=29.28 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=37.9
Q ss_pred ceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 19 YEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
+.|.+||+.-+++..++++++++-.+|++++.+.+++.. +.|.+.+
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~-~~~~l~~ 48 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQN-NGFSVYI 48 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCT-TTCCCCC
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCC-CcceEEe
Confidence 457889999999888899999999999999999999642 4455544
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.65 E-value=3.2 Score=23.70 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=36.8
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
+..|.+.|..+++ .+++++++.++-.+|-+++.+..++. .+..-|.|
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~ 52 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP-VRQQRLLF 52 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC-TTTCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHEEEEE
Confidence 4568999998866 78899999999999999999998864 22333444
No 28
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=85.14 E-value=2.5 Score=27.21 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=35.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..+.++|...++ ++.|.|.+.++=+.|++..|+..++.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~ 63 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS 63 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 4569999999977 79999999999999999999999974
No 29
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.04 E-value=4.4 Score=25.10 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=39.7
Q ss_pred ceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecC
Q psy11810 19 YEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS 68 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~ 68 (93)
..+.++|+.= -++-+.+++...=++|.++|++.|.+. .+-=-|.|.+.
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEEECCT
T ss_pred CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEEeeCC
Confidence 4478888887 488899999999999999999999996 34456889774
No 30
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=84.56 E-value=1.9 Score=26.42 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+..|.+.|..+++ ++.++|.+.++=..|.+++++..|+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip 58 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 58 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 45669999999976 78899999999999999999999974
No 31
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=84.34 E-value=1.6 Score=24.59 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=34.8
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.+.|..+++ +++++++++++-.+|-.++++..++. .+..-|.|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~ 45 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP-PQQQRLIY 45 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence 4678888866 78899999999999999999999874 23344555
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.25 E-value=2.9 Score=24.43 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=36.7
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
..|.+.|..+++ ++++++++.++-.+|-.++++..++. .+..-|.|
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~qrL~~ 52 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP-KKQQQLEF 52 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC-TTTEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC-hHHEEEEE
Confidence 568999999976 78899999999999999999998864 23333444
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=84.06 E-value=2.1 Score=24.63 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=33.0
Q ss_pred eEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 20 EMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.|.+.|..+++ ++.++|++.++=.+|-+++++..|+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~ 40 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 40 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 48899999966 78899999999999999999999874
No 34
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=83.93 E-value=2.1 Score=27.41 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=41.7
Q ss_pred EEEEEEeCC-------C-eEEEEECCCChhhhHHHHHhcccCceee----eeeeeEEecCCCCee
Q psy11810 21 MNVRVTTMD-------A-ELEFAIQHTTTGKQLFDQTVKTIGLREV----WFFGLQYADSRGDLT 73 (93)
Q Consensus 21 ~~~~V~lLD-------~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~----dYFGL~y~d~~~~~~ 73 (93)
+.++|+.-+ + ...+-|++..+=++|.+++.+.+++... .-+.|+|.|.+|...
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~V 70 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFV 70 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEE
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEE
Confidence 677787652 2 4678899999999999999999998522 348999999887543
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=83.93 E-value=2.6 Score=24.26 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+++ ++.+++++.++-.+|=.++....|+.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 41 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC
Confidence 458999999966 78899999999999999999998874
No 36
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=83.82 E-value=2.6 Score=26.05 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=42.6
Q ss_pred eeecCCCCCceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 10 LTFGHPVDSYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 10 l~~~~~~~~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
-....+.....|.+.|..+.+.+++++++.++-.+|-+++.+..++. .+..-|.|
T Consensus 12 ~~~~~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~ 66 (100)
T 1yqb_A 12 SGLVPRGSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF 66 (100)
T ss_dssp CTTCCSCCTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred ccCCCCCCCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 34445666788999999997777899999999999999999998874 23334444
No 37
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=83.45 E-value=2.7 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=33.7
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+++ ++.+++++.++-.+|=.++++..++.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 42 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 42 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 569999999966 78899999999999999999988863
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=83.14 E-value=2.1 Score=24.07 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=35.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.+.|..+++ .+++++++.++-.+|-+++++..++. .+..-|.|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~ 45 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF 45 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence 4678888866 78899999999999999999999874 23444555
No 39
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.63 E-value=3.5 Score=25.53 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 16 VDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 16 ~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..+..|.+.|..+++ ++.+++...++-.+|-.+++...|+.
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 60 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE 60 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC
Confidence 345669999999966 78899999999999999999998863
No 40
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=82.44 E-value=1.4 Score=25.54 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.3
Q ss_pred eEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 20 EMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.|.+.|..+++ ++++++++.++-.+|-+++++..++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip 40 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP 40 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 47889999965 78899999999999999999999874
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=82.30 E-value=3.7 Score=24.41 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.2
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+++ ++.+++++.++-.+|-.++++..|+.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 41 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 468999999965 78899999999999999999998864
No 42
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=81.89 E-value=3.2 Score=26.51 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=34.6
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+..+.++|.. ++ ++.|.|.+.++=+.|++..|+..|+.
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~ 67 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE 67 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 34669999999 88 78999999999999999999999974
No 43
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=79.95 E-value=4.5 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=34.2
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..|.+.|..+++ ++++++++.++-.+|=.++.+..++.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 54 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 54 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4679999999966 78899999999999999999988874
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=79.47 E-value=3.2 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=31.5
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ +++++++++++-.+|-.++++..++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~ 37 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 5678998966 78899999999999999999999874
No 45
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=79.10 E-value=3.1 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=32.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ ++++++++.++-.+|-.++++..++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip 38 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 38 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 6788999966 78899999999999999999998874
No 46
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=78.17 E-value=1.9 Score=28.29 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCCceEEEEEEeC--CCeEE-EEECCCChhhhHHHHHhcccCce---eeeeeeeE
Q psy11810 16 VDSYEMNVRVTTM--DAELE-FAIQHTTTGKQLFDQTVKTIGLR---EVWFFGLQ 64 (93)
Q Consensus 16 ~~~k~~~~~V~lL--D~~~~-~~v~~~~~G~~Lfd~Vc~~L~L~---E~dYFGL~ 64 (93)
+...++.|+|+-. |..+. |.++..++.++|++++....+.. ..+||=..
T Consensus 5 ~~~~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~E 59 (110)
T 2bye_A 5 KCLQTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLME 59 (110)
T ss_dssp SCCCCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEE
T ss_pred ccCcEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEE
Confidence 4567889999988 44454 99999999999999999888764 45566444
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=78.09 E-value=4.9 Score=22.89 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=35.4
Q ss_pred eEEEEEEeCCC-eE-EEE-ECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 20 EMNVRVTTMDA-EL-EFA-IQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 20 ~~~~~V~lLD~-~~-~~~-v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
.|.+.|..+++ ++ .++ ++++++-.+|-.++++..++. .+..-|.|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~~ 49 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLFY 49 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 48899999966 64 898 999999999999999998864 23334444
No 48
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=76.96 E-value=3.8 Score=24.91 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+..|.+.|..+++ ++.+++++.++-.+|=.++++..++.
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 59 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 59 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 34669999999966 78899999999999999999998864
No 49
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=76.56 E-value=4.5 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=34.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..+.++|...|+ ++.|.|.+.++=+-|++..|++.|+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~ 77 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 77 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence 4568999998877 78999999999999999999999973
No 50
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.46 E-value=6.8 Score=25.28 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccC
Q psy11810 16 VDSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY 78 (93)
Q Consensus 16 ~~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~ 78 (93)
.+...+.|+|.+.|. .+.+.+...+++++++..|.+.++..|.+ .=|.=+...|++.=|.++
T Consensus 5 ~~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~-l~Lv~v~ssGEk~~lqp~ 67 (104)
T 1wgy_A 5 SSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEED-LALVAITFSGEKHELQPN 67 (104)
T ss_dssp CCSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGG-EEEEEECSSCCCCBCCTT
T ss_pred CCCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccc-eEEEEEccCCcEeecCCc
Confidence 345568899999977 56789999999999999999999986543 223334556666666443
No 51
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=76.20 E-value=5.8 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=34.3
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..+++ ++.+.+++.++-.+|=.++++..++.
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 3569999999966 88899999999999999999998874
No 52
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=74.45 E-value=6.8 Score=24.36 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=32.4
Q ss_pred EEEEEEeCCCeEEEEEC-CCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDAELEFAIQ-HTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~~~~~~v~-~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.++|+.+++...++++ +.++=.+|-+++.+..++.
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip 44 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIP 44 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcC
Confidence 88999999987789999 9999999999999999863
No 53
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.38 E-value=8.1 Score=23.07 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=33.9
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..+...+++++++.++-.+|=+++++..++.
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 53 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCN 53 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 467999999995588899999999999999999988864
No 54
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=74.02 E-value=5.3 Score=23.75 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=31.2
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ +++++++++++-.+|=.++.+..++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 4678888966 78899999999999999999988864
No 55
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=73.27 E-value=5.8 Score=23.56 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=32.2
Q ss_pred eEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 20 EMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 20 ~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.|.+.|..+++ +++++++++++-.+|-+++++..++.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP 46 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 47889999966 78899999999999999999999864
No 56
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=72.96 E-value=15 Score=23.19 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=42.3
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCccccc
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHK 83 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~k 83 (93)
..+.+.|..+++ +++++++++++-.+|-.++++..++. .+-.-|.|.. ..|+.++.+..
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~qrL~~~g-----~~L~d~~tL~~ 134 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIFAG-----KQLEDGRTLSD 134 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEETT-----EECCTTSBTGG
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhhEEEEECC-----EECCCCCCHHH
Confidence 447888999976 88899999999999999999998874 3344455532 24554544443
No 57
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=71.37 E-value=8.5 Score=23.90 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+++ .+.+++++.++-.+|-.++++..++.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 469999999966 78899999999999999999998864
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.75 E-value=9.1 Score=23.47 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=33.9
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..+.+.++++++..++-.+|-.++.+..++.
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip 53 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH 53 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCC
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 466999999997777899999999999999999988863
No 59
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=70.54 E-value=12 Score=21.39 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=30.2
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcc
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 52 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~ 52 (93)
..|.+.|..+++ .+++++++.++-.+|-.++.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~ 38 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAE 38 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhh
Confidence 458999999965 7889999999999999999987
No 60
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=70.40 E-value=3.6 Score=24.48 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=35.3
Q ss_pred EEEEEEeCCCeEEEE-ECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 21 MNVRVTTMDAELEFA-IQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 21 ~~~~V~lLD~~~~~~-v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.++|+++++...+. ++++++-.+|-..+.+..++. .+.+.|.|
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~~ 45 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIA-PGSQRILV 45 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCEE
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCC-ccceEEEe
Confidence 467899998865577 899999999999999998864 34556666
No 61
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=69.52 E-value=7.8 Score=28.71 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=36.8
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeee
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGL 63 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL 63 (93)
+.+.|+|-+.|+ ...+.|++..+..+|.+..+...++...+...|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L 75 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSL 75 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEE
Confidence 557999999987 788999999999999999988777665554443
No 62
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.44 E-value=13 Score=22.02 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=37.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
+..|.+.|..+.+ ++++++++.++-.+|=.++.+..|+. .+..-|.|
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~ 55 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP-VSKQTLIV 55 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence 3568999999966 88899999999999999999998863 33334444
No 63
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=68.66 E-value=13 Score=27.60 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=50.6
Q ss_pred eEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccC---ceeeeeeeeEEecC-CCCeeccccCccccc
Q psy11810 20 EMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIG---LREVWFFGLQYADS-RGDLTWIKLYKKIHK 83 (93)
Q Consensus 20 ~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~---L~E~dYFGL~y~d~-~~~~~WLdl~K~i~k 83 (93)
.++.+|++-..+-.+..+++++=.+....+.+.++ ..+-.=+||.-.+. ....+||+..+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~ 70 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDY 70 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGG
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHH
Confidence 36777887744677999999999999999999886 44667789999765 345899999997655
No 64
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.00 E-value=15 Score=21.28 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=32.7
Q ss_pred ceEEEEEEeCCC--eEEE-EECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA--ELEF-AIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~--~~~~-~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+++ ++.+ ++++.++-.+|-.++.+..++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip 46 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR 46 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC
Confidence 569999999955 6889 5999999999999999998864
No 65
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=67.83 E-value=13 Score=20.74 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=33.7
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
|.+.|.. ++ .++++++++++-.+|-.++.+..|+. .+..-|.|
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP-VANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEEE
Confidence 6777877 66 77899999999999999999998874 33444545
No 66
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.26 E-value=15 Score=22.46 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=33.8
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..++..+++++++.++-.+|-.++....|+.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 356899999995588899999999999999999998874
No 67
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=65.01 E-value=7.7 Score=25.63 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceee-----eeeeeEEecCCCCeecccc
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV-----WFFGLQYADSRGDLTWIKL 77 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~-----dYFGL~y~d~~~~~~WLdl 77 (93)
....+.|+|.+.|. .+.+.+...++.++++..|.+.++..|. +=.=|.=+...|++.=|.+
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp 72 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQP 72 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCT
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCC
Confidence 34568999999977 5668999999999999999999987663 1223444455566555543
No 68
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=64.53 E-value=19 Score=21.72 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=33.6
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..+.+++++++++.++-.+|=.++.+..|+.
T Consensus 13 ~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip 51 (94)
T 2kan_A 13 VRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTP 51 (94)
T ss_dssp SCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSC
T ss_pred CCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 355899999996688899999999999999999988863
No 69
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=63.95 E-value=20 Score=22.70 Aligned_cols=40 Identities=5% Similarity=0.191 Sum_probs=33.8
Q ss_pred CCceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 17 DSYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 17 ~~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.++.+.++|+-=++++.|.|.+.++=+-|++.-|++.|+.
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~ 57 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVS 57 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSC
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCC
Confidence 3566999999534488999999999999999999999974
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=63.68 E-value=11 Score=23.88 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=31.4
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ .+++++++.++-.+|-.++++..|+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 5678888866 78899999999999999999999874
No 71
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=63.12 E-value=12 Score=23.44 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=34.1
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..+.+.|..+++ ++++++++.++-.+|-.++.+..++.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 46 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4668999999966 78899999999999999999988864
No 72
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.41 E-value=26 Score=22.07 Aligned_cols=62 Identities=8% Similarity=0.057 Sum_probs=43.4
Q ss_pred CceEEEEEEeCCCeEE-EEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccc
Q psy11810 18 SYEMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIH 82 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~-~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~ 82 (93)
.+++.+-|.+.-++.. +.|+++.+=++|+..||+.=++.-..|- |. .......=||++|+|.
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~-Ll--~d~~~~e~LdLskSLn 70 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTL-LL--KDYQSQEPLDLTKSLN 70 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEE-EE--SCSSCCCBCCTTSCHH
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEE-Ee--cCCCCCcccchhcchh
Confidence 4778888988888665 8999999999999999988776322221 21 2222233478888764
No 73
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.18 E-value=11 Score=23.78 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..|++ +++++|++.++=.+|=.++-+..++.
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~ 44 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK 44 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 459999999977 88999999999988878887777764
No 74
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=61.63 E-value=25 Score=21.90 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=34.6
Q ss_pred CCceEEEEEEeCCC--eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 17 DSYEMNVRVTTMDA--ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 17 ~~k~~~~~V~lLD~--~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
.+..+.++|+--|+ ++.|.|.+.++=+-|++..|+..|+..
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~ 64 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG 64 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 45668888887766 578999999999999999999999853
No 75
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.42 E-value=20 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=33.7
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..++..++++++..++-.+|-.++++..++.
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 68 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQ 68 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSC
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 356999999994488899999999999999999998864
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=56.76 E-value=22 Score=23.33 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=33.8
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..+.+ ++.+++++.++-.+|=.++++..++.
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 57 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 57 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4669999999976 78899999999999999999988863
No 77
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.13 E-value=13 Score=22.95 Aligned_cols=36 Identities=6% Similarity=0.147 Sum_probs=30.6
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ .+.+++++.++-.+|=.++.+..|+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 38 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE 38 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 6788998855 78899999999999999999998873
No 78
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.63 E-value=31 Score=20.36 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=30.2
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhccc
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTI 53 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L 53 (93)
..|.+.|..+++ .+++++++.++-.+|-.+++...
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC
Confidence 558999999966 78899999999999999988765
No 79
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=54.27 E-value=25 Score=24.37 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=33.8
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+-.|.+.|..+++ ++.++|++.++-.+|=.++++..++.
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp 142 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 142 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC
Confidence 3458999999966 88899999999999999999988874
No 80
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.90 E-value=23 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=28.3
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhccc
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTI 53 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L 53 (93)
|.+.|..+++ .+++++++.++-.+|=.++.+.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~ 34 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEK 34 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhc
Confidence 5678888855 78899999999999999999884
No 81
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=53.37 E-value=29 Score=22.31 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|..+++ ++.+++++.++-.+|=.++.+..|+.
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 118 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 118 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC
Confidence 458899999966 88899999999999999999998875
No 82
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=53.36 E-value=10 Score=22.94 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred eEEEEECCCChhhhHHHHHhcccCce---e-eeeeeeEEecCCCCee
Q psy11810 31 ELEFAIQHTTTGKQLFDQTVKTIGLR---E-VWFFGLQYADSRGDLT 73 (93)
Q Consensus 31 ~~~~~v~~~~~G~~Lfd~Vc~~L~L~---E-~dYFGL~y~d~~~~~~ 73 (93)
.+.+.|++..+=++|.+++.+.+++. + +.-+.|+|.|.+|...
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~V 49 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFV 49 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEE
Confidence 35577889999999999999999974 1 3568999999877543
No 83
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=53.19 E-value=19 Score=21.49 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCceeeeeeeeEE
Q psy11810 18 SYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 65 (93)
Q Consensus 18 ~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y 65 (93)
...|.+.|.. ..++.+++++.++-.+|-.++++..++. .+..-|.|
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 62 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIA-PEDQVVLL 62 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCC-GGGCEEEE
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhHEEEEE
Confidence 3457888888 5588899999999999999999998864 33334444
No 84
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=57.42 E-value=3 Score=23.66 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=29.2
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ +++++++++++-.+|-+++++..|+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 37 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP 37 (76)
Confidence 4567777865 67889999999999999999888864
No 85
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=52.01 E-value=25 Score=21.63 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred ceEEEEEEeC---CC-eEEEEECC-CChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTM---DA-ELEFAIQH-TTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lL---D~-~~~~~v~~-~~~G~~Lfd~Vc~~L~L~ 56 (93)
..+.+.|..+ ++ .+++++++ .++-.+|=.++....++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip 68 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP 68 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC
Confidence 5689999998 55 78899998 999999999999988864
No 86
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=51.29 E-value=36 Score=24.69 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=32.6
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeE
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 64 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~ 64 (93)
....|+|-.-|+ ...+.|++..+..+|.+.+...-+....++.-|-
T Consensus 7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~ 53 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLV 53 (256)
T ss_dssp -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEE
T ss_pred CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEE
Confidence 346899998877 7889999999999999999987777766666654
No 87
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.37 E-value=43 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=31.0
Q ss_pred ceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+.+...|.+-+.++++++++.++..+|=.++++.-|+.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp 45 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP 45 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 44556666656688999999999999999999999973
No 88
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=49.12 E-value=24 Score=23.68 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=31.3
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ ++.+++++.++-.+|=.++.+..++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip 37 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 4678999976 78899999999999999999988863
No 89
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=48.82 E-value=28 Score=24.11 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=34.1
Q ss_pred CCceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 17 DSYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 17 ~~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
.+..+.++|.- ++ ++.|.|.+.++=+-|++.-|++.|+..
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~ 58 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 58 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCCh
Confidence 45668888886 54 789999999999999999999999844
No 90
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.39 E-value=41 Score=21.04 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=34.1
Q ss_pred CCceEEEEEEeCC-CeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 17 DSYEMNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 17 ~~k~~~~~V~lLD-~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
....|.+.|..+. ..+.++|++.++-.+|=.+|.+.-|+.
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip 65 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR 65 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 3456999999994 488899999999999999999988863
No 91
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=47.79 E-value=34 Score=24.08 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=32.9
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..+.++|. .++ ++.|.|.+.++=+.|++..|++.|+.
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~ 65 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE 65 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC
Confidence 455899997 465 88999999999999999999999984
No 92
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=47.43 E-value=34 Score=22.34 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=32.1
Q ss_pred CceEEEEEEeC--CCe-EEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTM--DAE-LEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lL--D~~-~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
.+++.|+|+-. |.. ..+.+...++.++++.++....|..
T Consensus 5 ~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 5 EESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred CceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 56788999888 444 4599999999999999999997753
No 93
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=46.35 E-value=41 Score=21.94 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=40.7
Q ss_pred eEEEEEEeC-----CCeEE-EEECCC----C-------hhhhHHHHHhccc-CceeeeeeeeEEecCCCCeeccccCccc
Q psy11810 20 EMNVRVTTM-----DAELE-FAIQHT----T-------TGKQLFDQTVKTI-GLREVWFFGLQYADSRGDLTWIKLYKKI 81 (93)
Q Consensus 20 ~~~~~V~lL-----D~~~~-~~v~~~----~-------~G~~Lfd~Vc~~L-~L~E~dYFGL~y~d~~~~~~WLdl~K~i 81 (93)
.+.+++.++ +.++. |.++.. . +=.+|.++|-+-. +|.+. =|-+.|.|.+|...++--+..+
T Consensus 20 ~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~-~f~l~YkDEdGDlItISsDeEL 98 (117)
T 2ktr_A 20 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG-GFQAHYRAERGDLVAFSSDEEL 98 (117)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS-CEEEEEECTTCCEEEECSHHHH
T ss_pred cEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC-cEEEEEECCCCCEEEecCHHHH
Confidence 478888887 23444 888632 1 3345666665555 45544 3999999999998888655554
Q ss_pred c
Q psy11810 82 H 82 (93)
Q Consensus 82 ~ 82 (93)
.
T Consensus 99 ~ 99 (117)
T 2ktr_A 99 T 99 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=46.23 E-value=29 Score=22.27 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=32.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+.+ ++.+++++.++-.+|=.++.+..|+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 39 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH 39 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 6788999966 78899999999999999999999874
No 95
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=45.42 E-value=35 Score=24.51 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=33.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
+..+.++|. .|+ ++.|.|.+.++=+-|++..|++.|+..
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~ 94 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 94 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 345899996 466 889999999999999999999999743
No 96
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.40 E-value=53 Score=19.58 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=30.8
Q ss_pred ceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCc
Q psy11810 19 YEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
..|.++|..-...+++++++.++-.+|=.++....++
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgi 52 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGL 52 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCS
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 4588888854447889999999999999999988886
No 97
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=41.58 E-value=52 Score=19.18 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 17 DSYEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 17 ~~k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
++.++.+.+.+-+..+++++++.++-.+|=.++.+..++.
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 48 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL 48 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3455666555545588899999999999999999888864
No 98
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=40.98 E-value=46 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=35.1
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCceeeeeeee
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGL 63 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL 63 (93)
+.+.|+|...|+ ...+.|++..+..++.+.++...++.......|
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l 78 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCL 78 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEE
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEE
Confidence 347899988888 567999999999999999998888655433333
No 99
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=39.47 E-value=65 Score=20.02 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCCCceEEEEEEeC-CCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 15 PVDSYEMNVRVTTM-DAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 15 ~~~~k~~~~~V~lL-D~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..+..+.+.|..+ +..+.+++++..+=.+|=.++....|+.
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip 58 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ 58 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC
Confidence 44556799999988 4589999999999999989999999873
No 100
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=38.80 E-value=62 Score=20.42 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=39.5
Q ss_pred eEEEEEEeC-----CCeEE-EEECCC-----------ChhhhHHHHHhccc-CceeeeeeeeEEecCCCCeeccccCccc
Q psy11810 20 EMNVRVTTM-----DAELE-FAIQHT-----------TTGKQLFDQTVKTI-GLREVWFFGLQYADSRGDLTWIKLYKKI 81 (93)
Q Consensus 20 ~~~~~V~lL-----D~~~~-~~v~~~-----------~~G~~Lfd~Vc~~L-~L~E~dYFGL~y~d~~~~~~WLdl~K~i 81 (93)
.+.+++.++ +.++. |.++.. .+=.+|.++|-+-. +|.+. -|-+.|.|.+|...++--+..+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~-~f~l~Y~DedGDlItiSsDeEL 83 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPG-GFQAHYRAERGDLVAFSSDEEL 83 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS-CEEEEEECTTCCEEEECSHHHH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCC-cEEEEEECCCCCEEEecCHHHH
Confidence 467888887 23444 888642 13445655555543 34443 4999999999988888655544
Q ss_pred c
Q psy11810 82 H 82 (93)
Q Consensus 82 ~ 82 (93)
.
T Consensus 84 ~ 84 (102)
T 2kkc_A 84 T 84 (102)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=38.12 E-value=6.7 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
|.+.|..+++ ++++++++.++-.+|=.++.+..++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (128)
T ss_dssp -------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC
Confidence 4567888865 78899999999999999998888764
No 102
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.15 E-value=73 Score=19.06 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=31.3
Q ss_pred ceEEEEEEeCCCeE-EEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDAEL-EFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~~~-~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.++|..-...+ +++++..++-.+|=.++.+..|+.
T Consensus 6 ~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip 44 (96)
T 1wgg_A 6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQ 44 (96)
T ss_dssp CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCC
T ss_pred cEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 56888898644478 699999999999999999888863
No 103
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.76 E-value=83 Score=19.59 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=37.5
Q ss_pred CceEEEEEEeCC----C-eEEEEECCCChhhhHHHHHhcccCceeeeeeeeEEe
Q psy11810 18 SYEMNVRVTTMD----A-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA 66 (93)
Q Consensus 18 ~k~~~~~V~lLD----~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~ 66 (93)
.+...+.|.+.+ + .++++|++.++..+|=.+|.+..|+. .+..=|-|.
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip-~~qQrLI~~ 65 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ-ENYIKIVIN 65 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC-STTCEEEET
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC-HHHeEEEeC
Confidence 355677787776 4 68899999999999999999999973 455566554
No 104
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=34.09 E-value=78 Score=19.08 Aligned_cols=38 Identities=5% Similarity=0.146 Sum_probs=32.4
Q ss_pred eEEEEEEe---CCCeEEEEECCCChhhhHHHHHhcccCcee
Q psy11810 20 EMNVRVTT---MDAELEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 20 ~~~~~V~l---LD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
.+.+++-+ -+.++.+.++..-+-+.|.+.|.+.+++..
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~ 44 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSM 44 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCS
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCc
Confidence 46777777 356899999999999999999999999864
No 105
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=33.86 E-value=85 Score=19.42 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=32.1
Q ss_pred ceEEEEEEeCCCeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+.+.++|..=|..+-+.++.+..=++|.+++|.+|.+.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 33666666657788899999999999999999999994
No 106
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=33.61 E-value=75 Score=23.69 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=33.1
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
...|.+.|..+++ .+++++++.++-.+|=.++.+..++.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp 270 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 270 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3557889999965 78899999999999999999988864
No 107
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.56 E-value=92 Score=19.76 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=30.2
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcc
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 52 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~ 52 (93)
...|.++|.++.+ ++++++++.++=.+|=.+|.+.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~ 49 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 49 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHh
Confidence 3569999999966 8889999999999998888874
No 108
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=33.38 E-value=85 Score=19.32 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCeE-EEEECCCCh--hhhHHHHHhcccCceeeeeeeeEEecCCCCeeccccCcccccccccCCC
Q psy11810 29 DAEL-EFAIQHTTT--GKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKIHKSTTLATT 90 (93)
Q Consensus 29 D~~~-~~~v~~~~~--G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLdl~K~i~kQ~~~~~~ 90 (93)
|+++ .|.+++... =.++...|-+--.|. ..=|-+.|.|.+|...=+..+..+.+-+..++|
T Consensus 14 ~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~p 77 (86)
T 1wmh_B 14 DAEFRRFALPRASVSGFQEFSRLLRAVHQIP-GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP 77 (86)
T ss_dssp TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS
T ss_pred CCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-CCCEEEEEECCCCCEeeecCHHHHHHHHHhCCC
Confidence 6655 499886543 345555555444553 344999999988776666666666665555443
No 109
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=33.23 E-value=8.3 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=25.8
Q ss_pred eeeeeEEecCCCCeeccccC----cccccccccCCCCC
Q psy11810 59 WFFGLQYADSRGDLTWIKLY----KKIHKSTTLATTEV 92 (93)
Q Consensus 59 dYFGL~y~d~~~~~~WLdl~----K~i~kQ~~~~~~~~ 92 (93)
|.||+.|.++.+.+.||.++ -|++|.....+.|+
T Consensus 120 DmfGI~F~GhPdlRRiLl~~~w~ghPLRKDfpl~~~p~ 157 (207)
T 3i9v_5 120 DLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPT 157 (207)
T ss_dssp HTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCCCE
T ss_pred hhcCcEeCCCCCCccccCCCCCCCCCCCCCCCCcCCCC
Confidence 58999999988888888654 47777766655554
No 110
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.04 E-value=80 Score=18.91 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=31.4
Q ss_pred ceEEEEEEeC-C----CeEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTM-D----AELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lL-D----~~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.++|..+ . ..+++++++.++-.+|=.++....++.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip 48 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP 48 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC
Confidence 3488999887 3 367799999999999999999988864
No 111
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens}
Probab=31.74 E-value=84 Score=18.73 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=19.3
Q ss_pred ccCceeeeeeeeEEecCCCCeecccc
Q psy11810 52 TIGLREVWFFGLQYADSRGDLTWIKL 77 (93)
Q Consensus 52 ~L~L~E~dYFGL~y~d~~~~~~WLdl 77 (93)
.+.....-..||......+...|.|-
T Consensus 57 ~~~~~~~~WIGl~~~~~~~~w~W~dg 82 (132)
T 3vpp_A 57 KIKGSYDYWVGLSQDGHSGRWLWQDG 82 (132)
T ss_dssp TSSSCCEEEEEEEECTTTCCEEETTS
T ss_pred ccCCCccEEEEecccCCCCceEecCC
Confidence 33344556789999877889999884
No 112
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=31.34 E-value=99 Score=19.43 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=36.3
Q ss_pred EEEEEEeCCC---eEEEEECCCChhhhHHHHHhcccCce---eeeeeeeEEe
Q psy11810 21 MNVRVTTMDA---ELEFAIQHTTTGKQLFDQTVKTIGLR---EVWFFGLQYA 66 (93)
Q Consensus 21 ~~~~V~lLD~---~~~~~v~~~~~G~~Lfd~Vc~~L~L~---E~dYFGL~y~ 66 (93)
+.+.|.-+.+ ++++++++.++-.+|=+++.+..|+. .+++||-+-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll 76 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLA 76 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEc
Confidence 5566666653 67899999999999999999999973 4778887754
No 113
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=31.22 E-value=43 Score=19.74 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCeEEE-EECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDAELEF-AIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~-~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.++|..-...+.+ ++++.++-.+|=.++.+..|+.
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip 44 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCC
T ss_pred ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 4578888864447888 9999999999999999988873
No 114
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=29.42 E-value=1.1e+02 Score=19.56 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=29.2
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcc
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 52 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~ 52 (93)
..|.++|.++.+ ++++++++.++-.+|=++|.+.
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~ 50 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 50 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSS
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHH
Confidence 348999999966 8889999999999998888873
No 115
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=29.11 E-value=86 Score=21.93 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=29.2
Q ss_pred EEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCC
Q psy11810 32 LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRG 70 (93)
Q Consensus 32 ~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~ 70 (93)
+.+.+++.++=++|++.||+.++|....-+=|.....++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~ 192 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSN 192 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCC
Confidence 457779999999999999999998654445555544333
No 116
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=27.84 E-value=83 Score=19.95 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=30.5
Q ss_pred eEEEEECCCChhhhHHHHHhcccCceee--eeeeeEEec
Q psy11810 31 ELEFAIQHTTTGKQLFDQTVKTIGLREV--WFFGLQYAD 67 (93)
Q Consensus 31 ~~~~~v~~~~~G~~Lfd~Vc~~L~L~E~--dYFGL~y~d 67 (93)
-.++-+...++.+++..++.+.+||... +-|-|.-+.
T Consensus 25 Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 25 YKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 3568999999999999999999999753 457887763
No 117
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=27.52 E-value=13 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=0.0
Q ss_pred EEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCc
Q psy11810 21 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
|.+.|..+++ ++.+++++.++-.+|=.++.+..++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gi 36 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGI 36 (152)
T ss_dssp ------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 4567778855 7778888888888888888887776
No 118
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.36 E-value=96 Score=18.02 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=29.9
Q ss_pred ceEEEEEEeCCC---eEEEEECCCChhhhHHHHHhccc--Cc
Q psy11810 19 YEMNVRVTTMDA---ELEFAIQHTTTGKQLFDQTVKTI--GL 55 (93)
Q Consensus 19 k~~~~~V~lLD~---~~~~~v~~~~~G~~Lfd~Vc~~L--~L 55 (93)
..|.+.|..+.+ .+++++++.++-.+|=.++.+.. ++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i 47 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERP 47 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCC
Confidence 458899999955 46677779999999999999877 65
No 119
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=25.72 E-value=2.7e+02 Score=22.58 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=42.9
Q ss_pred CCCCceEEEEEEeCCCe-EEEEECCCChhhhHHHHHhcccCceeeeeeeeEEecCCCCee
Q psy11810 15 PVDSYEMNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT 73 (93)
Q Consensus 15 ~~~~k~~~~~V~lLD~~-~~~~v~~~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~ 73 (93)
.+.+....|+|...|.+ ..+.+...++.+++...+.+.+|+.|. .-|.=+...|...
T Consensus 347 ~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~v~~~~~~~ 404 (694)
T 3cf6_E 347 IRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEG--LIIVKMNSGGEKV 404 (694)
T ss_dssp CCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSC--EEEEEECTTSCEE
T ss_pred CCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCccc--ceEEEEeecCccc
Confidence 34456789999999874 569999999999999999999998663 4455454444433
No 120
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.31 E-value=1.3e+02 Score=18.92 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=29.2
Q ss_pred eEEEEEEeCCCeEE-EEECCCChhhhHHHHHhcccCc
Q psy11810 20 EMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 20 ~~~~~V~lLD~~~~-~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
...++|.|.+++.+ +++.+.-+-++-+++.++.=||
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L 53 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL 53 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC
Confidence 35899999988655 9999988888888888877776
No 121
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=23.64 E-value=1.5e+02 Score=19.08 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.0
Q ss_pred ceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..+.+.|..+++ ++.+++++..+-.+|=.+|....|+.
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 133 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 133 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC
Confidence 346777888866 78899999999999999999998874
No 122
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=23.43 E-value=17 Score=26.50 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=0.0
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
+..|.++| ..++ ++.|.|.+.++=+-|++..|++.|+.
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs 57 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE 57 (227)
T ss_dssp ----------------------------------------
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence 45588999 5565 88899999999999999999999874
No 123
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.82 E-value=1.2e+02 Score=17.50 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=30.6
Q ss_pred ceEEEEEEeCCCeEEEEECCC-----ChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMDAELEFAIQHT-----TTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~~-----~~G~~Lfd~Vc~~L~L~ 56 (93)
..|.+.|......+++++++. ++=.+|=.++.+..|+.
T Consensus 6 ~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 6 SGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp SSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 458889988655788999885 88889999998888864
No 124
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=22.51 E-value=1.4e+02 Score=18.18 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=30.5
Q ss_pred ceEEEEEEeCC----------C-eEEEEECCCChhhhHHHHHhcccCce
Q psy11810 19 YEMNVRVTTMD----------A-ELEFAIQHTTTGKQLFDQTVKTIGLR 56 (93)
Q Consensus 19 k~~~~~V~lLD----------~-~~~~~v~~~~~G~~Lfd~Vc~~L~L~ 56 (93)
..+.+.|.... + ++++++++.++-.+|=.++....|+.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMP 72 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCC
Confidence 45777777752 3 67899999999999999999988863
No 125
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=22.44 E-value=90 Score=18.57 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=27.0
Q ss_pred EEEEEEeCCC-eEEEEE--CCCChhhhHHHHH-hcccCc
Q psy11810 21 MNVRVTTMDA-ELEFAI--QHTTTGKQLFDQT-VKTIGL 55 (93)
Q Consensus 21 ~~~~V~lLD~-~~~~~v--~~~~~G~~Lfd~V-c~~L~L 55 (93)
|.+.|..+.+ ++.+++ ++.++-.+|=.++ ...-|+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gi 40 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKAS 40 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCS
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCC
Confidence 6788999966 566654 4999999999998 665565
No 126
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=21.41 E-value=1.5e+02 Score=18.22 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=30.8
Q ss_pred CceEEEEEEeCCC-eEEEEECCCChhhhHHHHHhcccCc
Q psy11810 18 SYEMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL 55 (93)
Q Consensus 18 ~k~~~~~V~lLD~-~~~~~v~~~~~G~~Lfd~Vc~~L~L 55 (93)
.....++|++.|+ .+.-......+=++|++-|-.+.+.
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~ 49 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGN 49 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCC
Confidence 3458899999988 5777778888889999999888654
No 127
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.36 E-value=1.7e+02 Score=18.63 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCceEEEEEEeCCCeEEEEECC--CChhhhHHHHHhcccCceeeeeeeeEEecCCCCeecc
Q psy11810 17 DSYEMNVRVTTMDAELEFAIQH--TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI 75 (93)
Q Consensus 17 ~~k~~~~~V~lLD~~~~~~v~~--~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WL 75 (93)
+.-++..+|..=+....|.|+- +.+=.+|...|+...+|. -|=+.|.|.+|...=+
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSI 68 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECC
T ss_pred cCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEE
Confidence 3455788888877788888854 788899999999999996 3589999988876544
No 128
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=21.22 E-value=1.6e+02 Score=18.24 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=43.3
Q ss_pred ceEEEEEEeCCCeEEEEECC--CChhhhHHHHHhcccCceeeeeeeeEEecCCCCeeccc
Q psy11810 19 YEMNVRVTTMDAELEFAIQH--TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76 (93)
Q Consensus 19 k~~~~~V~lLD~~~~~~v~~--~~~G~~Lfd~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd 76 (93)
-++..+|..=+....|.|+- ..+=.+|...|+...+|. -|=+.|.|.+|...=+.
T Consensus 5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEEC
T ss_pred ceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEe
Confidence 34677777777788888854 778889999999999996 35899999888765443
No 129
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=20.95 E-value=1e+02 Score=21.22 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=23.0
Q ss_pred EEEEECCCChhhhHHHHHhcccCcee
Q psy11810 32 LEFAIQHTTTGKQLFDQTVKTIGLRE 57 (93)
Q Consensus 32 ~~~~v~~~~~G~~Lfd~Vc~~L~L~E 57 (93)
+.+.+++.++=++|++.+|+.+++..
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~ 167 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPD 167 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCT
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCC
Confidence 45788999999999999999999864
Done!