RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11810
(93 letters)
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein;
1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4
PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A
2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 76.9 bits (189), Expect = 9e-19
Identities = 48/63 (76%), Positives = 54/63 (85%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
++VRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+KL KK
Sbjct: 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61
Query: 81 IHK 83
+
Sbjct: 62 VTA 64
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER
actin binding, masking, regulation, SELF-inhibition,
cell A membrane protein; 2.10A {Spodoptera frugiperda}
PDB: 2i1k_A 1e5w_A
Length = 575
Score = 78.0 bits (191), Expect = 9e-19
Identities = 56/63 (88%), Positives = 59/63 (93%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 5 MNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 64
Query: 81 IHK 83
+ +
Sbjct: 65 VMQ 67
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural
genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A
3bin_A 2he7_A 2rq1_A
Length = 296
Score = 70.8 bits (173), Expect = 2e-16
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 20 EMNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY 78
+ + +V+ +D E ++ G+ L + + + L E +FGL D+ TW+
Sbjct: 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSA 76
Query: 79 KKIHK 83
K+I K
Sbjct: 77 KEIKK 81
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 68.5 bits (167), Expect = 2e-15
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KK
Sbjct: 23 FTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDKK 81
Query: 81 IHK 83
+
Sbjct: 82 VLD 84
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 58.8 bits (142), Expect = 6e-12
Identities = 7/69 (10%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 20 EMNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD----LTW 74
+ +++ +D + + T + IG+ + L L W
Sbjct: 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNW 144
Query: 75 IKLYKKIHK 83
+ + + +
Sbjct: 145 LDHGRTLRE 153
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 45.7 bits (107), Expect = 3e-07
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 20 EMNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY 78
EM V + I TT ++ ++ ++ + + + + + I+
Sbjct: 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESR 275
Query: 79 KKI 81
+
Sbjct: 276 TVV 278
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 44.9 bits (105), Expect = 5e-07
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 17 DSYEMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI 75
+ + VT MD + TT ++L + I L++ + F L A +
Sbjct: 260 SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLG 319
Query: 76 KLYKKI 81
+
Sbjct: 320 SGSDHV 325
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 44.2 bits (104), Expect = 7e-07
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 18/79 (22%)
Query: 21 MNVRVTTMDA---ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT---- 73
VR+ MD +E + TT +Q+ + ++ + +F + L
Sbjct: 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIMEG-MR-LSQETQQYFTIWICSENLSLQLKPY 63
Query: 74 ---------WIKLYKKIHK 83
W ++ ++
Sbjct: 64 HKPLQHVRDWPEILAELTN 82
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 27.1 bits (61), Expect = 0.84
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 8 VTLTFG--HPVDSYEM 21
+ G H VDS ++
Sbjct: 535 AIVYNGSYHEVDSSDL 550
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 25.9 bits (58), Expect = 1.9
Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 8 VTLTFG--HPVDSYEM 21
VTL G H VDS EM
Sbjct: 565 VTLYDGSYHEVDSSEM 580
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 25.5 bits (55), Expect = 1.9
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 43 KQLFDQTVKTIGLRE----VWFFGLQYADSRGDLTWIKLYKKIH 82
+ +D+ K GL WF +YA G+L W Y+ +
Sbjct: 52 PEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSAN 95
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 25.9 bits (58), Expect = 2.0
Identities = 8/16 (50%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 8 VTLTFG--HPVDSYEM 21
L G H VDS EM
Sbjct: 564 AKLYDGSYHDVDSSEM 579
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 25.9 bits (58), Expect = 2.0
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 8 VTLTFG--HPVDSYEM 21
+ L FG H VDS E+
Sbjct: 576 IRLHFGSYHDVDSSEL 591
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.411
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,376,409
Number of extensions: 65805
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 18
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)