RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11810
         (93 letters)



>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 84

 Score = 81.7 bits (202), Expect = 7e-23
 Identities = 48/63 (76%), Positives = 54/63 (85%)

Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
          ++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+KL KK
Sbjct: 2  ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61

Query: 81 IHK 83
          +  
Sbjct: 62 VTA 64


>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 84

 Score = 77.1 bits (190), Expect = 5e-21
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 80
            VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ KK
Sbjct: 3  FTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDKK 61

Query: 81 IHK 83
          +  
Sbjct: 62 VLD 64


>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 69.4 bits (170), Expect = 5e-18
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 21 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 79
          M+ +V+ +D    E  ++    G+ L  +  + + L E  +FGL   D+    TW+   K
Sbjct: 1  MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 60

Query: 80 KIHK 83
          +I K
Sbjct: 61 EIKK 64


>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
          (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
          Length = 79

 Score = 23.6 bits (51), Expect = 2.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 21 MNVRVTTMDAELEFAIQHTTTGKQLFDQ 48
          +N++V+   +E+ F I+ TT  ++L + 
Sbjct: 5  INLKVSDGSSEIFFKIKKTTPLRRLMEA 32


>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca
          [TaxId: 2021]}
          Length = 302

 Score = 24.4 bits (52), Expect = 2.7
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 40 TTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 76
              +L++   +   +R V      Y         IK
Sbjct: 6  VKNGRLYEANGQEFIIRGVSHPHNWYPQHTQAFADIK 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,499
Number of extensions: 12354
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)