BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11811
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
          Length = 1887

 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 67  VLCNLIALFGCIASLKDMDYLETNLKHLITLPKPGH----------SSKMAIKDLFRKYH 116
           +L N++ + GC+   K    +ET    +I    P H           SK++++ LF ++H
Sbjct: 795 MLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRWH 854


>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
          Length = 1688

 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 67  VLCNLIALFGCIASLKDMDYLETNLKHLITLPKPGH----------SSKMAIKDLFRKYH 116
           +L N++ + GC+   K    +ET    +I    P H           SK++++ LF ++H
Sbjct: 596 MLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRWH 655


>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
          Length = 1887

 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 67  VLCNLIALFGCIASLKDMDYLETNLKHLITLPKPGH----------SSKMAIKDLFRKYH 116
           +L N++ + GC+   K    +ET    +I    P H           SK++++ LF ++H
Sbjct: 795 MLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRWH 854


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.141    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,983,659
Number of Sequences: 62578
Number of extensions: 353459
Number of successful extensions: 924
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)