Query psy11811
Match_columns 369
No_of_seqs 347 out of 3005
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 99.9 1E-25 3.4E-30 218.4 5.2 170 31-245 12-209 (306)
2 3h90_A Ferrous-iron efflux pum 99.9 7.1E-25 2.4E-29 209.4 4.3 169 32-245 4-200 (283)
3 3j1z_P YIIP, cation efflux fam 99.8 1.4E-20 4.9E-25 182.2 8.3 190 118-356 13-208 (306)
4 3h90_A Ferrous-iron efflux pum 99.8 1.6E-20 5.4E-25 179.3 7.1 191 117-356 3-199 (283)
5 2jp3_A FXYD domain-containing 11.2 4.5E+02 0.015 19.7 5.1 39 257-295 7-45 (67)
6 2lx0_A Membrane fusion protein 9.7 2.6E+02 0.0089 17.5 2.8 23 215-237 5-27 (32)
7 2zxe_G FXYD10, phospholemman-l 8.3 5.3E+02 0.018 19.6 4.6 31 257-287 9-39 (74)
8 1qle_D Cytochrome AA3, ccytoch 6.7 2.7E+02 0.0091 19.0 2.1 27 258-284 13-40 (43)
9 3hd7_B Syntaxin-1A; membrane p 4.8 4.3E+02 0.015 20.9 2.6 15 28-42 81-95 (109)
10 2k9j_B Integrin beta-3; transm 4.0 8.6E+02 0.03 16.2 3.3 27 270-296 13-39 (43)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.91 E-value=1e-25 Score=218.44 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=146.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHhhHHHHHHHHHHHHhhcCccccccccccCCCCchHHHHH---
Q psy11811 31 PLQMYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGCIASLKDMDYLETNLKHLITLPKPGHSSKMA--- 107 (369)
Q Consensus 31 ~~~~~~~l~~~~~~~~~k~~~g~~~~S~allaDa~h~l~d~~a~~~~~~~~~~~~~p~d~~~~~~~~~~~gh~~~~~--- 107 (369)
+...++++++|++++++|+++|++|||+||+|||+||++|+++++++++++|.++|||| ..|||||+|.+.
T Consensus 12 r~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d------~~~pyG~~R~E~l~a 85 (306)
T 3j1z_P 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPAD------HDHRYGHGKAEPLAA 85 (306)
T ss_dssp STTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCC------CTTSSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------ccCCCchhhHHHHHH
Confidence 45589999999999999999999999999999999999999999999999999999999 589999987432
Q ss_pred ---------------HHHHHhhhcch---h-------HHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhhhHHhHHHHHH
Q psy11811 108 ---------------IKDLFRKYHPL---Q-------MYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALFG 162 (369)
Q Consensus 108 ---------------~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~~~~~~~S~al~ada~H~l~D~~~~~~ 162 (369)
++...|..+|. . ..++++++.+.+.++...++..+|.++.+|++|.++|++++++
T Consensus 86 l~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~ 165 (306)
T 3j1z_P 86 LAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAA 165 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhH
Confidence 22222222221 1 1344556777777888889999999999999999999999999
Q ss_pred HHHHhHhcccccccccCCcccccchhhhhhhccccccCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11811 163 CIASLKYKDNTERCMNSSSVKSSMESAETLKTQSDVKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQT 242 (369)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~~~~E~LaALivgl~Il~~Al~I~~eAi~~ 242 (369)
+++++... .+||.++|++++++++++++..++.+++++...
T Consensus 166 vli~~~~~---------------------------------------~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~ 206 (306)
T 3j1z_P 166 VLLALVLS---------------------------------------QYGWWWADGLFAVLIACYIGQQAFDLGYRSIQA 206 (306)
T ss_dssp CCCTTSSC---------------------------------------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------------------------HhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987665 568999999999999999999999999999999
Q ss_pred HHh
Q psy11811 243 LGH 245 (369)
Q Consensus 243 L~d 245 (369)
|++
T Consensus 207 Ll~ 209 (306)
T 3j1z_P 207 LLD 209 (306)
T ss_dssp HTT
T ss_pred HhC
Confidence 997
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.90 E-value=7.1e-25 Score=209.44 Aligned_cols=169 Identities=16% Similarity=0.175 Sum_probs=146.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHhhHHHHHHHHHHHHhhcCccccccccccCCCCchHHHHH----
Q psy11811 32 LQMYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGCIASLKDMDYLETNLKHLITLPKPGHSSKMA---- 107 (369)
Q Consensus 32 ~~~~~~l~~~~~~~~~k~~~g~~~~S~allaDa~h~l~d~~a~~~~~~~~~~~~~p~d~~~~~~~~~~~gh~~~~~---- 107 (369)
+..++++++|++++++|+++|+++||+||++||+||++|+++++++++++|.++|||| +.|||||.|.+.
T Consensus 4 r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d------~~~pyG~~r~E~l~~l 77 (283)
T 3h90_A 4 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD------DNHSFGHGKAESLAAL 77 (283)
T ss_dssp THHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCC------SSCSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCCcchHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999999 589999987432
Q ss_pred --------------HHHHHhhhcch----------hHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhhhHHhHHHHHHH
Q psy11811 108 --------------IKDLFRKYHPL----------QMYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGC 163 (369)
Q Consensus 108 --------------~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~S~al~ada~H~l~D~~~~~~~ 163 (369)
++.+.|-.+|. -..++++++...+.++...++.++|.++.+|++|+++|+++++++
T Consensus 78 ~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~v 157 (283)
T 3h90_A 78 AQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAI 157 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 22222222221 124556778888888888999999999999999999999999999
Q ss_pred HHHhHhcccccccccCCcccccchhhhhhhccccccCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11811 164 IASLKYKDNTERCMNSSSVKSSMESAETLKTQSDVKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTL 243 (369)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~~~~E~LaALivgl~Il~~Al~I~~eAi~~L 243 (369)
++|.... .+||+++|++++++++++++..++.+++++...|
T Consensus 158 li~~~~~---------------------------------------~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~L 198 (283)
T 3h90_A 158 LLALGLS---------------------------------------WYGWHRADALFALGIGIYILYSALRMGYEAVQSL 198 (283)
T ss_dssp CSSSCSC---------------------------------------STTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------------------------HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887553 4588899999999999999999999999999999
Q ss_pred Hh
Q psy11811 244 GH 245 (369)
Q Consensus 244 ~d 245 (369)
++
T Consensus 199 l~ 200 (283)
T 3h90_A 199 LD 200 (283)
T ss_dssp TT
T ss_pred hC
Confidence 97
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.81 E-value=1.4e-20 Score=182.23 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhhhHHhHHHHHHHHHHhHhcccccccccCCcccccchhhhhhhcccc
Q psy11811 118 LQMYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGCIASLKYKDNTERCMNSSSVKSSMESAETLKTQSD 197 (369)
Q Consensus 118 ~~~~~~l~~~~~~~~~~~~~~~~~~S~al~ada~H~l~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (369)
...++++++|++++++|+++|..+||++|+||++|+++|+++++++++++++++||+|
T Consensus 13 ~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d---------------------- 70 (306)
T 3j1z_P 13 LASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPAD---------------------- 70 (306)
T ss_dssp TTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----------------------
Confidence 3467899999999999999999999999999999999999999999999999998885
Q ss_pred ccCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccchhHHHHHHHHHHHH
Q psy11811 198 VKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHIGQLCCNPSETRLRNTFGWARIDVLVMLIGCI 277 (369)
Q Consensus 198 ~~~~~~~~~~~~~fG~~~~E~LaALivgl~Il~~Al~I~~eAi~~L~d~d~~~~rp~~~~i~~tfG~~Rae~LaAlInav 277 (369)
+++||||.|+|++++++++++++..|+.+++|+++++.+ |++ .... .++..+..+
T Consensus 71 ---------~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~-------p~~--~~~~-------~~~~~v~~~ 125 (306)
T 3j1z_P 71 ---------HDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLN-------PSP--VENA-------TLGVVVSVV 125 (306)
T ss_dssp ---------CTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-------TCC--GGGT-------TCCHHHHHH
T ss_pred ---------ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheec-------CCC--cccc-------ccchhhhhh
Confidence 679999999999999999999999999999999999987 443 2221 122223333
Q ss_pred HHHHHHHHHHH-HHHHHhcCCC-----CCccccchhHHHhhhhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHh
Q psy11811 278 FLASLCFSLML-EAAQTLGHIS-----HHDEMHHPLQVLLVGAVGMGHISHHDEMHHPLQVLLVGAVGMILNGFCYLKAT 351 (369)
Q Consensus 278 ~Ll~~ai~I~~-EAi~Rl~~p~-----~~~ev~~~l~~~~v~~~g~~~~~~~~~~~dp~~~l~va~vGli~N~~~~~~~~ 351 (369)
.++.+.....+ ....+-.+.. ..|...|.+++++|++ |+...+.+|.|.||...++++++ ++.+.+..++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli-~~~~~~~g~~~~Dpi~ai~Ia~~-I~~~~~~l~~~s 203 (306)
T 3j1z_P 126 AIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLL-ALVLSQYGWWWADGLFAVLIACY-IGQQAFDLGYRS 203 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCC-TTSSCCSSSCCCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHH-HHHHHHhCcchhhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 33333322222 1122222211 2334557777887776 55667789999999999999987 668888877776
Q ss_pred hhHHH
Q psy11811 352 SATMM 356 (369)
Q Consensus 352 ~~~l~ 356 (369)
...++
T Consensus 204 ~~~Ll 208 (306)
T 3j1z_P 204 IQALL 208 (306)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55444
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.81 E-value=1.6e-20 Score=179.34 Aligned_cols=191 Identities=10% Similarity=0.107 Sum_probs=147.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhhhHHhHHHHHHHHHHhHhcccccccccCCcccccchhhhhhhccc
Q psy11811 117 PLQMYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGCIASLKYKDNTERCMNSSSVKSSMESAETLKTQS 196 (369)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~~~~~~~S~al~ada~H~l~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (369)
++..++++++|++++++|+.+|..+||.+|++||+|+++|++++++++++.++++||+|
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d--------------------- 61 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD--------------------- 61 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------------
Confidence 35678899999999999999999999999999999999999999999999999998875
Q ss_pred cccCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccchhHHHHHHHHHHH
Q psy11811 197 DVKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHIGQLCCNPSETRLRNTFGWARIDVLVMLIGC 276 (369)
Q Consensus 197 ~~~~~~~~~~~~~~fG~~~~E~LaALivgl~Il~~Al~I~~eAi~~L~d~d~~~~rp~~~~i~~tfG~~Rae~LaAlIna 276 (369)
++|||||.|+|++++++++++++..++.+++|+++++.+ |++ .... .++..+..
T Consensus 62 ----------~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~-------~~~--~~~~-------~~~l~v~~ 115 (283)
T 3h90_A 62 ----------DNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLIS-------PTP--MTDP-------GVGVIVTI 115 (283)
T ss_dssp ----------SSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-------SCC--CCCC-------CCCTHHHH
T ss_pred ----------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCC--CCcc-------hHHHHHHH
Confidence 679999999999999999999999999999999999987 433 2211 12233444
Q ss_pred HHHHHHHHHHHHHH-H-HHhcCCC----CCccccchhHHHhhhhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHH
Q psy11811 277 IFLASLCFSLMLEA-A-QTLGHIS----HHDEMHHPLQVLLVGAVGMGHISHHDEMHHPLQVLLVGAVGMILNGFCYLKA 350 (369)
Q Consensus 277 v~Ll~~ai~I~~EA-i-~Rl~~p~----~~~ev~~~l~~~~v~~~g~~~~~~~~~~~dp~~~l~va~vGli~N~~~~~~~ 350 (369)
+.++.+.+...+.. . +|.-++. ..|-..|.+++++|.++..+ .+.+|.|.||...+++++. ++.+.+..++.
T Consensus 116 ~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~-~~~g~~~~D~i~~i~ia~~-i~~~~~~l~~~ 193 (283)
T 3h90_A 116 VALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGL-SWYGWHRADALFALGIGIY-ILYSALRMGYE 193 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCS-CSTTSCCSTHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44555544333322 2 2322222 23345577788887765555 6789999999999999987 67888888877
Q ss_pred hhhHHH
Q psy11811 351 TSATMM 356 (369)
Q Consensus 351 ~~~~l~ 356 (369)
+...++
T Consensus 194 s~~~Ll 199 (283)
T 3h90_A 194 AVQSLL 199 (283)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 765554
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.20 E-value=4.5e+02 Score=19.66 Aligned_cols=39 Identities=5% Similarity=0.083 Sum_probs=25.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11811 257 RLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLG 295 (369)
Q Consensus 257 ~i~~tfG~~Rae~LaAlInav~Ll~~ai~I~~EAi~Rl~ 295 (369)
+..+.|-|+++-+-+.+++++..+...+-++..-.+.-.
T Consensus 7 ~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 7 GSPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp TSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCcccchHHheecchhhHHHHHHHHHHHHHcCcccccC
Confidence 356788999988887777776666666666555444433
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=9.75 E-value=2.6e+02 Score=17.50 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11811 215 RIDVLVMLIGCIFLASLCFSLML 237 (369)
Q Consensus 215 ~~E~LaALivgl~Il~~Al~I~~ 237 (369)
..|+++|++.-+..+..|+.++.
T Consensus 5 iweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888777767777777764
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=8.26 E-value=5.3e+02 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=20.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11811 257 RLRNTFGWARIDVLVMLIGCIFLASLCFSLM 287 (369)
Q Consensus 257 ~i~~tfG~~Rae~LaAlInav~Ll~~ai~I~ 287 (369)
+..+.|-|+++-+-+.+++++..+...+-|+
T Consensus 9 ~dpF~YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 9 DERFTYDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGGCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccchHHheeccchhHHHHHHHHHHHHH
Confidence 4567889999887776666655555444444
No 8
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=6.70 E-value=2.7e+02 Score=18.95 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=20.0
Q ss_pred ccccc-chhHHHHHHHHHHHHHHHHHHH
Q psy11811 258 LRNTF-GWARIDVLVMLIGCIFLASLCF 284 (369)
Q Consensus 258 i~~tf-G~~Rae~LaAlInav~Ll~~ai 284 (369)
.+.|| |+-+....+.++.++.++..++
T Consensus 13 hE~Ty~gFi~~~k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 13 QQATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577 8888888888777777776654
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=4.80 E-value=4.3e+02 Score=20.93 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=6.1
Q ss_pred hccchhHHHHHHHHH
Q psy11811 28 KYHPLQMYIVLVLTI 42 (369)
Q Consensus 28 ~~~~~~~~~~l~~~~ 42 (369)
+.|++..++.+++-+
T Consensus 81 ~~rkk~~i~l~~~~i 95 (109)
T 3hd7_B 81 KARRKKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hccCcceehHHHHHH
Confidence 444443444433333
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=4.05 E-value=8.6e+02 Score=16.16 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11811 270 LVMLIGCIFLASLCFSLMLEAAQTLGH 296 (369)
Q Consensus 270 LaAlInav~Ll~~ai~I~~EAi~Rl~~ 296 (369)
....+.++.++.....+++.-..+.-|
T Consensus 13 v~gvi~~ivliGl~lLliwk~~~~i~D 39 (43)
T 2k9j_B 13 LLSVMGAILLIGLAALLIWKLLITIHD 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeh
Confidence 334455555555555555544444333
Done!