RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11811
(369 letters)
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 46.9 bits (112), Expect = 7e-06
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 39/130 (30%)
Query: 120 MYIVLVLTICYFFVQLVVSHFTHALTLLVDSYH----VLCNLIALFGCIASLKYKDNTER 175
+ I L+L + + ++++ T +L LL D+ H L L+AL + +
Sbjct: 24 LLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATK--- 80
Query: 176 CMNSSSVKSSMESAETLKTQSDVKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSL 235
R TFG+ R+++L + + L + +
Sbjct: 81 --------------------------------RFTFGYKRLEILAAFLNALLLIVVSLLI 108
Query: 236 MLEAAQTLGH 245
+ EA Q L
Sbjct: 109 LWEAIQRLLA 118
Score = 36.9 bits (86), Expect = 0.012
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 34 MYIVLVLTICYFFVQLVVSHFTHALTLLVDSYHVLCNLIALF 75
+ I L+L + + ++++ T +L LL D+ H+L + +AL
Sbjct: 24 LLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALL 65
Score = 33.8 bits (78), Expect = 0.11
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 27/90 (30%)
Query: 259 RNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHISHHDEMHHPLQVLLVGAVGMG 318
R TFG+ R+++L + + L + ++ EA Q L P +
Sbjct: 81 RFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLL---------APPPI--------- 122
Query: 319 HISHHDEMHHPLQVLLVGAVGMILNGFCYL 348
H +L+V +G+++N L
Sbjct: 123 ---------HYSGMLVVAIIGLVVNLVSAL 143
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 38.8 bits (91), Expect = 0.003
Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 49/216 (22%)
Query: 130 YFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGCIASLKYKDNTERCMNSSSVKSSMESA 189
V+L T +L LL D+ H L +L++ + +L+
Sbjct: 2 LALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRL-------------------- 41
Query: 190 ETLKTQSDVKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHIGQL 249
P + R+ FG R++ L LI + L + ++ E+ + L
Sbjct: 42 --------SSRPPDK---RHPFGHGRLEPLAALIVSLLLLGVGVFILYESIERLIS---- 86
Query: 250 CCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHIS---HHDEMHHP 306
P E G + L+ L+ + LA A + +G S D +H
Sbjct: 87 ---PEEI---EPGGILLV-ALISLVVNLLLALYLRR----AGRKIGKKSSALRADALHAL 135
Query: 307 LQVLLVGAVGMGHISHHDEMHHPLQVLLVGAVGMIL 342
+ VL AV +G + L + +++
Sbjct: 136 VDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLI 171
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 44 YFFVQLVVSHFTHALTLLVDSYHVLCNLIALFGCIASLK 82
V+L T +L LL D+ H L +L++ + +L+
Sbjct: 2 LALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALR 40
>gnl|CDD|235836 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
Reviewed.
Length = 624
Score = 30.9 bits (71), Expect = 1.3
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 24/82 (29%)
Query: 295 GHISHHDE----MHHPLQVLLVGAVGMG----------------HISHHDEMHHPLQV-- 332
I H E M PL VL V +V G E H P+ V
Sbjct: 443 EKIHHPHESPAVMTLPLIVLAVLSVFAGALIVPPFLGVLPLTTELAHGEAEHHLPVWVAL 502
Query: 333 --LLVGAVGMILNGFCYLKATS 352
L+V G+ L YLK +
Sbjct: 503 LPLVVALAGIALAWLLYLKKPT 524
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 29.5 bits (67), Expect = 2.3
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 259 RNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHISHHDEMHHPLQVLLVGAVG 316
R+ FG R ++L L+ +FL + ++ EA + + + + +L+V VG
Sbjct: 49 RHPFGHGRAEILAALLNGLFLVVVALFILYEAIE---RLINPEPEIDGGTMLIVAIVG 103
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 30.0 bits (67), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 312 VGAVGMGH-ISHHDEMHHPLQVLLVGAVGMILNG----FCYL 348
GA G GH +SH++E HPL V L + +CYL
Sbjct: 201 YGAEGNGHALSHYEETQHPLAVKL----PSLSKEDCDIYCYL 238
>gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional.
Length = 137
Score = 28.0 bits (62), Expect = 4.8
Identities = 7/36 (19%), Positives = 7/36 (19%), Gaps = 10/36 (27%)
Query: 296 HISHHDEMHHPLQVLLVGAVGMGHISHHDEMHHPLQ 331
HH H D H P Q
Sbjct: 50 DRPHHHPHRHQQD----------DHHLQDRQHLPQQ 75
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in 19S
proteasomal subunits Rpn7 and Rpn8. This family
includes lid subunits of the 26 S proteasome regulatory
particles, Rpn7 (PSMD7; proteasome 26S non-ATPase
subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S
non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be
critical for the integrity of the 26 S proteasome
complex by establishing a correct lid structure. It is
necessary for the incorporation/anchoring of Rpn3 and
Rpn12 to the lid and essential for viability and normal
mitosis. Rpn7 and Rpn8 are ATP-independent components of
the 19S regulator subunit, and contain the MPN
structural motif on its N-terminal region. However,
while they show a typical MPN metalloprotease fold, they
lack the canonical JAMM motif, and therefore do not show
catalytic isopeptidase activity. It is suggested that
Rpn7 function is primarily structural.
Length = 280
Score = 28.3 bits (64), Expect = 6.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 83 DMDYLET--------NLKHLI-----TLPKPGHSSKMAIKDLFRKYHP 117
D +YLE N K I T PK + + I +LFR+Y P
Sbjct: 64 DHNYLENMYGMFKKVNAKEKIVGWYSTGPKL-RPNDLDINELFRRYCP 110
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.4 bits (64), Expect = 7.0
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 239 AAQTLGHIGQLCCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHIS 298
A+ TLG I Q+C + L I MLIG + S+ L++ ++
Sbjct: 328 ASSTLG-IAQVCGSSLWIWL---AAVLGISAWNMLIGILIACSIVSLLLILFVAPGRPVA 383
Query: 299 HHDEMHH 305
H+E+ H
Sbjct: 384 AHEEIPH 390
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 28.4 bits (64), Expect = 7.9
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 88 ETNLKHLITLPKPGHSSKMAIKDLFRKYHPLQMYIVLVLTICYFFVQLVVSH---FTHAL 144
++ L ++ L + SSK I+ L + + VL + + F V L + AL
Sbjct: 142 DSTLAQIVELVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGALGALYRAL 201
Query: 145 TLLV 148
+LV
Sbjct: 202 AVLV 205
>gnl|CDD|240311 PTZ00201, PTZ00201, amastin surface glycoprotein; Provisional.
Length = 192
Score = 27.4 bits (61), Expect = 8.8
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 211 FGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHI------------GQLCCNPSETRL 258
+G A + LV+L GC +C +L + A TLG + G LC +
Sbjct: 88 YGAAFVLGLVLLYGCTIHRWVCLALNIVGAVTLGVVWAAMVVTYYKDDGPLCPRVRDMGY 147
Query: 259 RNTFGWARIDVLVML--IGCIFLASLC 283
R G+A + V +L + IFL C
Sbjct: 148 RFGTGFALLVVAWILDILNIIFLLLPC 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.140 0.443
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,965,012
Number of extensions: 1687818
Number of successful extensions: 2446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2432
Number of HSP's successfully gapped: 42
Length of query: 369
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 271
Effective length of database: 6,590,910
Effective search space: 1786136610
Effective search space used: 1786136610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (26.8 bits)