RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11811
(369 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 58/312 (18%), Positives = 95/312 (30%), Gaps = 121/312 (38%)
Query: 9 KSAL----EPGHSSKMAI--------------KDLFRKYHPL-QMYIVLVLTICYFFVQL 49
SAL G++ +AI +DL++ YH L I ++
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 50 VVS---HFTHALTLL--------------VDSYHVLCNLIALFGCIASLKDMDYLETNLK 92
+ FT L +L + S + C LI + L
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV--------------IQLA 247
Query: 93 H-LITLPKPGHSSKMAIKDLFRKYHPLQMYIVLV-LTICYFFVQLVVSHFTHALTLLVDS 150
H ++T G + P ++ L T Q +V+ A T +S
Sbjct: 248 HYVVTAKLLG-------------FTPGELRSYLKGATGH---SQGLVTAVAIAETDSWES 291
Query: 151 YHVLCN--LIALF--GCIASLKYKDNTERC--------MNSSSVKSSMESAETLKT---- 194
+ V + LF G RC + S ++ S+E+ E + +
Sbjct: 292 FFVSVRKAITVLFFIGV-----------RCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 195 ---------QSDV-KCN---PSETR----LRNTFGWARIDVLVMLIGCIFLASLC-FSLM 236
Q V K N P+ + L N A+ V+ G SL +L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---AKNLVVS---G--PPQSLYGLNLT 392
Query: 237 LEAAQTLGHIGQ 248
L A+ + Q
Sbjct: 393 LRKAKAPSGLDQ 404
Score = 31.9 bits (72), Expect = 0.41
Identities = 55/285 (19%), Positives = 94/285 (32%), Gaps = 81/285 (28%)
Query: 90 NLKHLITLPKPGHSSKMAIKDLFRKY--HPLQMYIV---------LVLTICYFFVQLV-- 136
+L+H++ +P +++ F K P + + LV + LV
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 137 --VSHFTHALTLLVDSYH--VLC-NLI-ALFGCIASLKYKDNTERCMNSSSVKSSMESAE 190
V F L L + + L N I AL A L +++T +K+ + +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHAL---AAKLLQENDTTLVKTKELIKNYITARI 131
Query: 191 TLKTQSDVKCNPSETRLRNTF-----GWARIDVLVMLI----GCI---F--LASLCFS-- 234
K D S + L F G A++ + I G F L L +
Sbjct: 132 MAKRPFD---KKSNSAL---FRAVGEGNAQL----VAIFGGQGNTDDYFEELRDL-YQTY 180
Query: 235 ------LMLEAAQTLGHIGQLCCNPSETRLRNTFGWARIDVLVMLIG------CIFLASL 282
L+ +A+TL +L + T G +++L L +L S+
Sbjct: 181 HVLVGDLIKFSAETL---SELIRTTLDAEKVFTQG---LNILEWLENPSNTPDKDYLLSI 234
Query: 283 CFSL-MLEAAQTLGHIS--------HHDEMHHPLQVLLVGAVGMG 318
S ++ Q L H E+ L+ GA G
Sbjct: 235 PISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLK----GATGHS 274
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.006
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 80 SLKDMDYLETNLKHLITLPKPGHSSKMAIK 109
+LK L+ +LK L + +AIK
Sbjct: 21 ALKK---LQASLK----LYADDSAPALAIK 43
Score = 31.1 bits (69), Expect = 0.30
Identities = 5/20 (25%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 7 KIKSALE---PGHSSKMAIK 23
K++++L+ + +AIK
Sbjct: 24 KLQASLKLYADDSAPALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.019
Identities = 44/351 (12%), Positives = 92/351 (26%), Gaps = 104/351 (29%)
Query: 81 LKDMDYLETNLKHLITLPKPGHSSKMAIKDLFRKYHPLQMYIVLVLTICYFFVQLVVSHF 140
+ + D K + +PK S + I + + + L T+ ++V
Sbjct: 30 VDNFD-----CKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 141 THALTL----LVDSYHVLCNLIALFGCIASLKYKDNTERCMNSSSVKSSM---------- 186
L + L+ ++ + Y + +R N + V +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSM----MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 187 --ESAETLKTQSDV---------K-------CNPSETRLRNTFG--WARI-------DVL 219
++ L+ +V K C + + + F W + VL
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 220 VMLIGCIFLASLCFSLMLEAAQTLGHI--GQLCCNPSETRLRNTFGWAR-IDVLVML--- 273
ML L + + H +L + + LR + L++L
Sbjct: 200 EML------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 274 ----------IGCIFL-----ASLCFSLM---------------LEAAQTLG------HI 297
+ C L + L L +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 298 SHHD---EMH--HPLQVLLVGAVGMGHISHHDEMHHPLQVLLVGAVGMILN 343
D E+ +P ++ ++ ++ D H L + LN
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Score = 32.1 bits (72), Expect = 0.32
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 44 YFFVQLVVSHFTHALTLLVDSYHVLCNL-----IALFGCIASLKDMDYLETNLKHLITLP 98
YF+ SH +H L N+ + LF + D +LE ++H T
Sbjct: 472 YFY-----SHI---------GHH-LKNIEHPERMTLFRMV--FLDFRFLEQKIRHDSTAW 514
Query: 99 KPGHSSKMAIKDLFRKYHPLQMYIVLVLTICYFFVQLVVS--HFTHAL-TLLVDSYHVLC 155
S ++ L + Y P YI + +LV + F + L+ S +
Sbjct: 515 NASGSILNTLQQL-KFYKP---YIC---DNDPKYERLVNAILDFLPKIEENLICSKY--T 565
Query: 156 NL--IALF 161
+L IAL
Sbjct: 566 DLLRIALM 573
Score = 28.7 bits (63), Expect = 3.5
Identities = 35/278 (12%), Positives = 76/278 (27%), Gaps = 81/278 (29%)
Query: 87 LETNLKHLITLPKPGHSSKMAIKDLFR-KYHPLQMYIVL-----VLTICYFFVQ---LVV 137
+ H + HS + ++ L + K + +VL F + L+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 138 SHF---THALTLLVDSYHVLCNLIALFGCIASLKYKDNTE----RCMNSSSVKSSMESAE 190
+ F T L+ ++ L + D + + ++ +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL-------TPDEVKSLLLKYLD--------CRPQ 316
Query: 191 TLKTQSDVKCNP----------SETRLRNTFGWARIDV--LVMLIGCIFLASLCFSLMLE 238
L + + NP + W ++ L +I L L + +
Sbjct: 317 DLPREV-LTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIE-SSLNVLEPAEYRK 373
Query: 239 AAQTLG------HIGQLCCNPSET--RLRNTFGWARIDV-LVMLIGCIFLASLCFSLMLE 289
L HI P+ + W + VM++ + L ++E
Sbjct: 374 MFDRLSVFPPSAHI------PTILLSLI-----WFDVIKSDVMVV----VNKLHKYSLVE 418
Query: 290 AAQTLGHISHHDEMHHPLQVLLVGAVGMGHISHHDEMH 327
IS + + L + + +H
Sbjct: 419 KQPKESTISIPS-----IYLEL-----KVKLENEYALH 446
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.19
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 284 FSLMLEAAQTLGHISHHDEMHHPLQVLLVGAVGM-GHISH----HDEMHHPLQVLL 334
F+ + E L HI E H +++L + M G + P QV+L
Sbjct: 572 FAAIPEQGIELEHIDSKSEFAH--RIMLTNILRMMGCVKKQKSARGIETRPAQVIL 625
Score = 32.5 bits (74), Expect = 0.25
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 68 LCNLIALFGCIASLKDMDYLETNLKHLITLP-KPGHS----------SKMAIKDLFRKYH 116
L N++ + GC+ K +ET +I LP P H SK++++ LF ++H
Sbjct: 597 LTNILRMMGCVKKQKSARGIETRPAQVI-LPMSPNHGTFGGDGMYSESKLSLETLFNRWH 655
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 30.2 bits (69), Expect = 1.1
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 63 DSYHVLCNLIALFGCIASLKDMDYLETNLKHLI 95
D Y++ + +A C+A+L+D YL + +
Sbjct: 241 DHYNL--DRLAQAACVAALRDQAYLSECCRRIR 271
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 29.7 bits (67), Expect = 1.9
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 198 VKCNPSETRLRNTFGWARIDVLVMLIGCIFLASLCFSLMLEAAQTLGHIGQLCCNPSETR 257
++C S LR ++ + +F ++L + L A I L
Sbjct: 253 IRCVRSIYELRMRHYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLY- 311
Query: 258 LRNTFGWARIDVLVMLIGCIFLASLCFSL 286
+ FGW + ++M I L +L L
Sbjct: 312 QTDHFGWTEL--ILMPIIKFILVALSIGL 338
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 28.7 bits (65), Expect = 2.8
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 57 ALTLLVDSYHVLCNLIALFGCIASLKDMDYLETNLKHLI 95
A + ++V + ++ +L + E K ++
Sbjct: 223 AYNRVRLPFNV--SYVSQMFAKVALDHREIFEERTKFIV 259
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 28.5 bits (64), Expect = 3.6
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 54 FTHALTLLVDSYHVLCNLIALFGCIASLKDMDYLETNLKHLITL 97
+ LT+L +++ L G +ASL D ++ + +
Sbjct: 266 IHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIEEVYSF 309
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 28.3 bits (64), Expect = 4.1
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 57 ALTLLVDSYHVLCNLIALFGCIASLKDMDYLETNLKHLI 95
A+ L+ YH+ + ++ I +L+ ++ L
Sbjct: 252 AVMLVRLPYHL--SALSQAAAIVALRHSADTLGTVEKLS 288
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 27.7 bits (62), Expect = 7.1
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 296 HISHHDEMHHPLQVLLVGAVGMG---------------HISHHDEMHHPLQVLLVGAVGM 340
H PL VLL+ + +G ++H + + +V VG+
Sbjct: 446 HAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGI 505
Query: 341 ILNGFCYLK 349
+L + +L
Sbjct: 506 LLAAWLWLG 514
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 27.5 bits (62), Expect = 8.5
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 57 ALTLLVDSYHVLCNLIALFGCIASLKDMDYLETNLKHLI 95
A+ +V + L A+L + E ++ +
Sbjct: 219 AMKRKQWFCNV--GTLDLHALEAALDNDRAREAHIAKTL 255
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 27.7 bits (62), Expect = 9.1
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 25/127 (19%)
Query: 186 MESAETLKTQSDVKCNPSETRLRNT-------------FGWA-RIDVLVMLIGCIF---- 227
ME E LK ++D + + + F +A +D L ML+G +
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 228 -----LASLCFSLMLEAAQTLGHIGQLCCNPSETRLRNTFG--WARIDVLVMLIGCIFLA 280
L L F M ++ ++G++ + N SE R F + I
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 281 SLCFSLM 287
L + +
Sbjct: 121 VLIVAYI 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.140 0.443
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,540,067
Number of extensions: 316136
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 23
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)