Query psy11812
Match_columns 152
No_of_seqs 190 out of 1190
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:38:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03557 zinc transporter ZitB 100.0 7.6E-28 1.6E-32 194.9 14.9 134 3-140 173-307 (312)
2 KOG1483|consensus 100.0 3.7E-28 7.9E-33 197.6 11.9 125 1-126 247-371 (404)
3 COG1230 CzcD Co/Zn/Cd efflux s 99.9 1.9E-26 4.2E-31 184.2 12.3 122 1-126 173-295 (296)
4 KOG1482|consensus 99.9 1.6E-25 3.4E-30 181.5 12.4 134 1-138 244-379 (379)
5 COG0053 MMT1 Predicted Co/Zn/C 99.9 2.8E-23 6.2E-28 167.7 12.3 120 4-128 169-293 (304)
6 PRK09509 fieF ferrous iron eff 99.9 3E-23 6.6E-28 167.0 11.5 119 3-126 166-288 (299)
7 TIGR01297 CDF cation diffusion 99.9 2.4E-22 5.1E-27 158.6 12.4 109 16-125 155-268 (268)
8 PF01545 Cation_efflux: Cation 99.9 9.2E-22 2E-26 156.2 10.7 121 3-127 157-283 (284)
9 KOG1484|consensus 99.8 1.1E-20 2.4E-25 151.6 11.8 122 1-126 225-348 (354)
10 KOG1485|consensus 99.3 1.4E-11 3.1E-16 101.9 8.6 112 16-128 288-403 (412)
11 COG3965 Predicted Co/Zn/Cd cat 96.0 0.022 4.7E-07 45.5 6.0 105 16-123 194-307 (314)
12 PF14535 AMP-binding_C_2: AMP- 95.1 0.41 9E-06 32.0 9.2 70 54-126 5-80 (96)
13 TIGR01297 CDF cation diffusion 89.9 0.66 1.4E-05 36.3 4.8 34 16-49 55-88 (268)
14 COG0053 MMT1 Predicted Co/Zn/C 85.4 2.6 5.7E-05 34.2 5.9 38 16-53 78-115 (304)
15 PRK03557 zinc transporter ZitB 83.5 2.1 4.7E-05 34.7 4.6 35 16-50 84-118 (312)
16 PF03780 Asp23: Asp23 family; 82.1 13 0.00027 24.9 8.2 49 75-123 50-105 (108)
17 PRK09509 fieF ferrous iron eff 81.8 3 6.5E-05 33.5 4.8 35 16-50 76-110 (299)
18 PF09580 Spore_YhcN_YlaJ: Spor 79.7 18 0.00039 26.6 8.1 65 55-125 77-143 (177)
19 TIGR00489 aEF-1_beta translati 72.6 25 0.00055 23.4 8.6 67 51-120 15-82 (88)
20 PF11654 DUF2665: Protein of u 72.1 2.9 6.4E-05 24.6 1.6 15 16-30 5-19 (47)
21 PF13740 ACT_6: ACT domain; PD 69.9 25 0.00053 22.1 7.9 56 55-115 16-71 (76)
22 TIGR02159 PA_CoA_Oxy4 phenylac 68.5 39 0.00086 24.5 7.3 51 72-125 17-67 (146)
23 PF07444 Ycf66_N: Ycf66 protei 68.5 4.5 9.9E-05 26.7 2.1 33 3-39 47-82 (84)
24 TIGR03406 FeS_long_SufT probab 67.1 42 0.0009 25.1 7.3 56 71-126 99-157 (174)
25 PRK10614 multidrug efflux syst 66.1 29 0.00062 32.9 7.7 88 16-110 7-112 (1025)
26 PF01545 Cation_efflux: Cation 64.0 9.2 0.0002 30.0 3.5 34 16-49 64-97 (284)
27 COG2092 EFB1 Translation elong 63.2 42 0.00091 22.4 7.7 66 51-119 15-81 (88)
28 KOG0109|consensus 61.6 50 0.0011 27.1 7.1 91 44-149 5-104 (346)
29 KOG2802|consensus 60.9 15 0.00032 31.2 4.2 52 7-96 383-434 (503)
30 COG2177 FtsX Cell division pro 60.7 78 0.0017 25.8 8.3 61 47-108 66-142 (297)
31 PRK09579 multidrug efflux prot 60.7 1.1E+02 0.0025 29.0 10.5 89 19-110 10-112 (1017)
32 TIGR00268 conserved hypothetic 57.6 28 0.00062 27.2 5.2 52 70-126 197-250 (252)
33 PF11062 DUF2863: Protein of u 54.7 5 0.00011 33.9 0.5 44 98-143 335-378 (398)
34 PRK15127 multidrug efflux syst 54.5 62 0.0013 30.9 7.7 91 19-111 8-112 (1049)
35 cd04870 ACT_PSP_1 CT domains f 53.7 52 0.0011 20.4 8.7 57 55-115 13-69 (75)
36 PRK10503 multidrug efflux syst 53.5 1.8E+02 0.004 27.8 10.6 90 18-110 18-121 (1040)
37 PRK11023 outer membrane lipopr 53.3 43 0.00092 25.2 5.4 69 47-126 83-153 (191)
38 PF01883 DUF59: Domain of unkn 53.1 52 0.0011 20.2 5.5 46 72-120 26-72 (72)
39 PRK09577 multidrug efflux prot 52.5 73 0.0016 30.3 7.8 88 20-110 9-110 (1032)
40 PF04972 BON: BON domain; Int 52.3 5.1 0.00011 24.1 0.2 29 45-74 30-58 (64)
41 PRK11118 putative monooxygenas 50.4 79 0.0017 21.6 6.7 64 56-125 24-88 (100)
42 PRK00435 ef1B elongation facto 45.9 87 0.0019 20.8 8.6 67 51-120 15-82 (88)
43 PRK10555 aminoglycoside/multid 45.7 1.3E+02 0.0029 28.7 8.4 90 20-111 9-112 (1037)
44 PF03147 FDX-ACB: Ferredoxin-f 45.1 86 0.0019 20.5 6.5 65 51-115 16-91 (94)
45 COG3105 Uncharacterized protei 43.8 27 0.00058 25.1 2.7 29 16-44 7-35 (138)
46 PF09390 DUF1999: Protein of u 43.7 67 0.0015 23.6 4.8 51 74-125 73-126 (161)
47 cd02413 40S_S3_KH K homology R 43.2 90 0.002 20.2 6.3 55 70-126 18-78 (81)
48 TIGR01608 citD citrate lyase a 41.6 62 0.0013 21.8 4.1 28 99-126 42-69 (92)
49 COG5547 Small integral membran 41.6 40 0.00087 20.7 2.9 23 10-35 7-29 (62)
50 PF10934 DUF2634: Protein of u 40.8 1E+02 0.0022 21.2 5.3 75 17-93 20-107 (112)
51 PLN00055 photosystem II reacti 39.5 37 0.00081 21.8 2.6 34 17-50 38-71 (73)
52 COG0841 AcrB Cation/multidrug 39.5 1.5E+02 0.0032 28.4 7.6 105 16-123 6-130 (1009)
53 PRK02624 psbH photosystem II r 38.8 39 0.00085 21.0 2.6 34 17-50 26-59 (64)
54 CHL00066 psbH photosystem II p 38.2 37 0.00081 21.8 2.5 34 17-50 38-71 (73)
55 PRK08201 hypothetical protein; 37.9 1.6E+02 0.0035 24.8 7.2 42 82-123 319-360 (456)
56 KOG1485|consensus 36.2 56 0.0012 27.9 4.0 34 14-47 178-211 (412)
57 PRK04439 S-adenosylmethionine 36.0 1.2E+02 0.0025 25.9 5.8 62 56-117 320-386 (399)
58 TIGR00915 2A0602 The (Largely 35.5 2E+02 0.0043 27.5 7.9 90 19-110 8-111 (1044)
59 PRK10568 periplasmic protein; 35.3 1.2E+02 0.0027 22.9 5.5 70 45-123 91-164 (203)
60 cd04869 ACT_GcvR_2 ACT domains 34.5 1.1E+02 0.0024 18.7 8.9 63 55-121 13-80 (81)
61 PRK11589 gcvR glycine cleavage 34.5 2E+02 0.0044 21.7 7.6 66 55-124 109-179 (190)
62 PF00403 HMA: Heavy-metal-asso 34.5 45 0.00097 19.6 2.4 45 55-108 13-58 (62)
63 PHA02568 J baseplate assembly 34.2 1.6E+02 0.0035 24.0 6.2 61 48-111 179-241 (300)
64 PF06649 DUF1161: Protein of u 34.1 1.1E+02 0.0023 18.4 3.9 29 100-128 2-30 (52)
65 TIGR02945 SUF_assoc FeS assemb 34.0 1.4E+02 0.003 19.6 7.6 44 83-126 37-81 (99)
66 PRK14740 kdbF potassium-transp 33.9 76 0.0016 16.6 2.9 24 16-39 2-25 (29)
67 PF05374 Mu-conotoxin: Mu-Cono 33.2 37 0.00081 16.5 1.5 18 131-148 2-19 (22)
68 TIGR00914 2A0601 heavy metal e 32.6 1.2E+02 0.0026 28.9 6.0 87 17-110 10-114 (1051)
69 PF07125 DUF1378: Protein of u 32.5 93 0.002 18.9 3.4 29 21-49 11-39 (59)
70 cd04877 ACT_TyrR N-terminal AC 32.5 54 0.0012 20.2 2.7 23 54-77 50-72 (74)
71 PF01037 AsnC_trans_reg: AsnC 31.3 1.2E+02 0.0026 18.1 8.0 58 54-121 11-69 (74)
72 COG1230 CzcD Co/Zn/Cd efflux s 30.5 1.1E+02 0.0023 25.0 4.6 38 10-50 84-121 (296)
73 cd04887 ACT_MalLac-Enz ACT_Mal 30.1 1.3E+02 0.0028 18.1 6.2 51 54-107 12-62 (74)
74 PF05371 Phage_Coat_Gp8: Phage 29.9 1.3E+02 0.0028 18.0 4.1 27 17-43 24-50 (52)
75 COG5583 Uncharacterized small 29.3 90 0.0019 18.8 3.0 24 98-121 6-31 (54)
76 PF06738 DUF1212: Protein of u 29.2 53 0.0012 24.3 2.6 37 4-43 115-151 (193)
77 PF12716 Apq12: Nuclear pore a 28.8 1.3E+02 0.0028 17.7 4.2 26 21-46 4-29 (54)
78 PF13291 ACT_4: ACT domain; PD 28.7 1.5E+02 0.0032 18.3 4.7 49 55-106 20-69 (80)
79 PF00873 ACR_tran: AcrB/AcrD/A 28.7 2.8E+02 0.006 26.3 7.6 90 19-111 8-111 (1021)
80 PRK10334 mechanosensitive chan 28.4 3.1E+02 0.0068 22.0 8.7 74 52-126 195-281 (286)
81 cd04888 ACT_PheB-BS C-terminal 27.9 71 0.0015 19.3 2.6 20 54-74 55-74 (76)
82 PF06295 DUF1043: Protein of u 27.8 61 0.0013 22.8 2.5 22 21-42 3-24 (128)
83 PF03755 YicC_N: YicC-like fam 27.7 1.2E+02 0.0025 22.0 4.1 50 74-126 20-71 (159)
84 PRK11677 hypothetical protein; 27.5 66 0.0014 23.1 2.6 26 17-42 3-28 (134)
85 COG3830 ACT domain-containing 27.2 1.5E+02 0.0033 19.8 4.1 41 83-124 41-82 (90)
86 COG1279 Lysine efflux permease 26.6 1.1E+02 0.0024 23.6 3.8 29 16-44 66-94 (202)
87 PF10805 DUF2730: Protein of u 26.4 44 0.00096 22.7 1.5 62 16-78 10-73 (106)
88 COG4280 Predicted membrane pro 26.4 1.5E+02 0.0033 23.1 4.5 40 22-62 66-105 (236)
89 TIGR00439 ftsX putative protei 26.3 2.3E+02 0.0049 23.0 5.9 96 20-118 34-161 (309)
90 PRK11026 ftsX cell division AB 25.9 2.3E+02 0.0051 22.9 5.9 54 19-74 33-99 (309)
91 PF01941 AdoMet_Synthase: S-ad 25.8 1.7E+02 0.0037 24.9 5.1 55 57-111 321-378 (396)
92 PF01390 SEA: SEA domain; Int 25.0 2E+02 0.0043 18.6 6.8 43 70-112 51-95 (107)
93 PRK09104 hypothetical protein; 24.9 3.5E+02 0.0076 22.8 7.0 31 82-112 327-357 (464)
94 PF07687 M20_dimer: Peptidase 24.3 1.5E+02 0.0032 19.2 3.8 31 82-112 76-106 (111)
95 PF08803 ydhR: Putative mono-o 24.2 2.4E+02 0.0051 19.1 6.4 62 57-124 22-84 (97)
96 PRK06164 acyl-CoA synthetase; 24.0 4.4E+02 0.0095 22.2 7.9 68 53-123 439-508 (540)
97 TIGR01606 holin_BlyA holin, Bl 23.4 1.9E+02 0.0041 17.9 3.7 27 22-48 21-50 (63)
98 PRK11179 DNA-binding transcrip 23.2 2.8E+02 0.0061 19.7 8.5 60 54-123 82-142 (153)
99 PF13131 DUF3951: Protein of u 22.1 1.3E+02 0.0027 18.0 2.7 19 21-39 10-28 (53)
100 PRK07079 hypothetical protein; 22.0 3E+02 0.0065 23.3 6.1 41 82-122 322-362 (469)
101 TIGR00722 ttdA_fumA_fumB hydro 21.9 2.8E+02 0.0061 22.3 5.5 60 32-95 190-249 (273)
102 cd04893 ACT_GcvR_1 ACT domains 21.1 2.2E+02 0.0048 17.7 9.0 61 55-121 15-75 (77)
103 PRK14475 F0F1 ATP synthase sub 21.0 1.8E+02 0.0038 21.2 4.0 33 16-48 6-41 (167)
104 PF08712 Nfu_N: Scaffold prote 20.6 2.6E+02 0.0055 18.2 5.9 46 56-112 37-82 (87)
105 PRK09274 peptide synthase; Pro 20.3 5.2E+02 0.011 21.9 7.3 58 53-113 453-512 (552)
No 1
>PRK03557 zinc transporter ZitB; Provisional
Probab=99.95 E-value=7.6e-28 Score=194.87 Aligned_cols=134 Identities=28% Similarity=0.463 Sum_probs=118.6
Q ss_pred eeehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecC
Q psy11812 3 CSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTS 82 (152)
Q Consensus 3 ~~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~ 82 (152)
+++++.++|| +|+||+++++++++|++++++++|++++.|||++|++.+.+++++.+.++.|||.+||++|+|++|
T Consensus 173 ~~~~~~~~g~---~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G- 248 (312)
T PRK03557 173 AALIIIWTGW---TPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVG- 248 (312)
T ss_pred HHHHHHHcCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeC-
Confidence 3445667888 899999999999999999999999999999999999888999988764479999999999999996
Q ss_pred CeEEEEEEEEecCCCCHHHHHHHHHHHHh-hCCCceEEEEeeecCcccCcCcCccchhh
Q psy11812 83 NKTVSTAHIIFLNPQDYLCCTHQLIDFFY-QQGISHVTIQPEFYEVRLKVCPHIVNAVD 140 (152)
Q Consensus 83 ~~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~~~i~~vtIqvep~~~~~~~c~~~~~~~~ 140 (152)
+.+++++|++++++.+.+++++++++.++ ++|+.++|||+||.+.+.++|.+||+-..
T Consensus 249 ~~~~v~~hv~v~~~~~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~~~~~~~~~~~ 307 (312)
T PRK03557 249 EKPVMTLHVQVIPPHDHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPDCHLNQGVSG 307 (312)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCcchhhhhhhcc
Confidence 78899999999998899999999999997 68999999999998755566777776543
No 2
>KOG1483|consensus
Probab=99.95 E-value=3.7e-28 Score=197.56 Aligned_cols=125 Identities=39% Similarity=0.793 Sum_probs=120.6
Q ss_pred CeeeehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEee
Q psy11812 1 MICSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQL 80 (152)
Q Consensus 1 ii~~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~ 80 (152)
|++++++|+++|.|++++||+.|++++++|++++||+.|+|..+|||..|..++.+.+++.++ .+|||.+|||+|+|++
T Consensus 247 i~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~-~~~gv~~vh~lhvWqL 325 (404)
T KOG1483|consen 247 IVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLL-TVPGVISVHDLHVWQL 325 (404)
T ss_pred EEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHh-cCcceeeeeeeeeeee
Confidence 468899999999999999999999999999999999999999999999999999999999994 8999999999999999
Q ss_pred cCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeeecC
Q psy11812 81 TSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFYE 126 (152)
Q Consensus 81 ~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep~~ 126 (152)
+++++.+++||.++...+.-+++++|++.++++||+.+|||+|+++
T Consensus 326 ~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~fh~~GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 326 AGSRIIATIHIQIQNPKEYMKIAEKIRSYFHDQGIHSTTIQPEFAP 371 (404)
T ss_pred ccceEEEEEEEEecCcHHHHHHHHHHHHHHHhcCCcceeeccchhh
Confidence 9999999999999999888899999999999999999999999988
No 3
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=184.19 Aligned_cols=122 Identities=34% Similarity=0.593 Sum_probs=113.6
Q ss_pred CeeeehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEee
Q psy11812 1 MICSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQL 80 (152)
Q Consensus 1 ii~~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~ 80 (152)
|+++++++++|| +|+||++|++++++|+.++|+++|+|.++|||+.|++.+.+++++.+ .+.|||.+|||+|+|++
T Consensus 173 Iia~i~i~~~~w---~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l-~~~~~v~~vhdlHvWsi 248 (296)
T COG1230 173 IIAAIVIRFTGW---SWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREAL-LRIPGVASVHDLHVWSI 248 (296)
T ss_pred HHHHHHHHHhCC---CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH-hcCCCccceeecccCCC
Confidence 467889999999 89999999999999999999999999999999999999999999999 59999999999999999
Q ss_pred cCCeEEEEEEEEecCCCCHHHHHHHHHHHHh-hCCCceEEEEeeecC
Q psy11812 81 TSNKTVSTAHIIFLNPQDYLCCTHQLIDFFY-QQGISHVTIQPEFYE 126 (152)
Q Consensus 81 ~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~~~i~~vtIqvep~~ 126 (152)
+++...+++|+.+++..+.+.+.+++++.+. +||+.|+|||+|+..
T Consensus 249 ~~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 249 TGGEHALTLHVVVDEVADADAALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred CCCceeEEEEEEecCccchHHHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 9999999999999966666668888888886 799999999999764
No 4
>KOG1482|consensus
Probab=99.93 E-value=1.6e-25 Score=181.51 Aligned_cols=134 Identities=26% Similarity=0.455 Sum_probs=127.5
Q ss_pred CeeeehHhhh-CCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEe
Q psy11812 1 MICSIIVYLT-DASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQ 79 (152)
Q Consensus 1 ii~~li~~~~-g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~ 79 (152)
++++.+++|. +| .++||+|+++.+++.+.+.++++|+.+.+|||+.|.+.+.+.+++.+ .+++||.+||+||+|.
T Consensus 244 ~iaa~Ii~f~P~~---~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l-~~iegV~~VHdLhIWs 319 (379)
T KOG1482|consen 244 LIAALIIYFKPEY---KIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGL-LSIEGVKAVHDLHIWS 319 (379)
T ss_pred HhhheeEEecccc---eecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHH-hhhcceeEEEEEEEEE
Confidence 4678888887 56 89999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred ecCCeEEEEEEEEecCCCCHHHHHHHHHHHHh-hCCCceEEEEeeecCcccCcCcCccch
Q psy11812 80 LTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFY-QQGISHVTIQPEFYEVRLKVCPHIVNA 138 (152)
Q Consensus 80 ~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~~~i~~vtIqvep~~~~~~~c~~~~~~ 138 (152)
++-++..+++|+..+++++++++.+++.+.++ +|++.++|||+||..+..++|..|+.|
T Consensus 320 iTv~k~~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~~c~~c~~p 379 (379)
T KOG1482|consen 320 ITVGKVALSVHLAIDSEADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMDDCLMCQTP 379 (379)
T ss_pred EecCceEEEEEEeecCCCCHHHHHHHHHHHHHhhcceEEEEEEecCCccchhhHhhccCC
Confidence 99999999999999999999999999999998 799999999999999889999999876
No 5
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.8e-23 Score=167.68 Aligned_cols=120 Identities=13% Similarity=0.237 Sum_probs=109.8
Q ss_pred eehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCC
Q psy11812 4 SIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSN 83 (152)
Q Consensus 4 ~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~ 83 (152)
|++..++|| +|+||+++++|+++|+++|++++|++++.|||+.+++.+.+++++.+ .+.|||.++|++|+|. +|+
T Consensus 169 gl~~~~~g~---~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i-~~~~~V~~v~~lr~R~-~G~ 243 (304)
T COG0053 169 GLLGSLLGW---PWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAII-LSVPGVKGVHDLRTRK-SGS 243 (304)
T ss_pred HHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHH-hcCCcceeeecceeee-eCC
Confidence 455667898 99999999999999999999999999999999888888899999999 6999999999999997 578
Q ss_pred eEEEEEEEEecCCC---CHHHHHHHHHHHHh-hCC-CceEEEEeeecCcc
Q psy11812 84 KTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQG-ISHVTIQPEFYEVR 128 (152)
Q Consensus 84 ~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~~-i~~vtIqvep~~~~ 128 (152)
.+++++|++++++. ++|++++++++.++ +++ +.+++||+||.+..
T Consensus 244 ~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~ 293 (304)
T COG0053 244 RIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEK 293 (304)
T ss_pred eEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 99999999999994 79999999999998 676 89999999999844
No 6
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.90 E-value=3e-23 Score=166.98 Aligned_cols=119 Identities=11% Similarity=0.085 Sum_probs=107.2
Q ss_pred eeehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecC
Q psy11812 3 CSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTS 82 (152)
Q Consensus 3 ~~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~ 82 (152)
.|+++.++|| +|+||+++++++++|++++++++|++.+.|||.+|++.+.++|++.+ +++|||.++|++|+|+.|
T Consensus 166 ~~~~~~~~g~---~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i-~~~~~v~~v~~l~~~~~G- 240 (299)
T PRK09509 166 LALGLSWYGW---HRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSG- 240 (299)
T ss_pred HHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH-HhCCCCcCceeeeeEeeC-
Confidence 3455666788 89999999999999999999999999999999998888889999999 699999999999999975
Q ss_pred CeEEEEEEEEecCCC---CHHHHHHHHHHHHh-hCCCceEEEEeeecC
Q psy11812 83 NKTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQGISHVTIQPEFYE 126 (152)
Q Consensus 83 ~~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~~i~~vtIqvep~~ 126 (152)
+..++++|+.++++. ++|++.+++|+.++ +++..+++||+||.+
T Consensus 241 ~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP~~ 288 (299)
T PRK09509 241 PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDPCS 288 (299)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 567899999999873 78999999999997 677778999999976
No 7
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.88 E-value=2.4e-22 Score=158.60 Aligned_cols=109 Identities=23% Similarity=0.477 Sum_probs=101.6
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLN 95 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~ 95 (152)
+|+||+++++++++++++++++++++.+.|||.+|++...+++++.+ ++.|||.++|++|+|+.|++++++++|+++++
T Consensus 155 ~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i-~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~ 233 (268)
T TIGR01297 155 HWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAI-LSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDP 233 (268)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHH-hcCCCcccceEeEEEEcCCCCEEEEEEEEECC
Confidence 89999999999999999999999999999999999888899999999 69999999999999999766999999999999
Q ss_pred CC---CHHHHHHHHHHHHh-h-CCCceEEEEeeec
Q psy11812 96 PQ---DYLCCTHQLIDFFY-Q-QGISHVTIQPEFY 125 (152)
Q Consensus 96 ~~---~~~~i~~~i~~~l~-~-~~i~~vtIqvep~ 125 (152)
+. ++|++.+++++.++ + +++.+++||+||+
T Consensus 234 ~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 234 DLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 84 67999999999885 6 5999999999984
No 8
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.87 E-value=9.2e-22 Score=156.16 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=105.6
Q ss_pred eeehHhhhCCCCccc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeec
Q psy11812 3 CSIIVYLTDASVAKY-VDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLT 81 (152)
Q Consensus 3 ~~li~~~~g~~~~~~-~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~ 81 (152)
+.++..+++| .+ +||++++++++++++.+++++|++.+.|||++|++...+++++.+ ++.|||.+++++|+|++|
T Consensus 157 ~~~~~~~~~~---~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i-~~~~~v~~v~~~~~~~~g 232 (284)
T PF01545_consen 157 SLLLAYLGPW---FWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRII-ESVPGVIEVHDLRVWQVG 232 (284)
T ss_dssp SSTSSSTT-S---TS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHH-HHTSS-SEEEEEEEEEET
T ss_pred HHHHHHHHhc---ccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhh-ccCCceEeccceEEEEec
Confidence 4445555666 55 999999999999999999999999999999998888789999999 689999999999999998
Q ss_pred CCeEEEEEEEEecCCC---CHHHHHHHHHHHHh-hC-CCceEEEEeeecCc
Q psy11812 82 SNKTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQ-GISHVTIQPEFYEV 127 (152)
Q Consensus 82 ~~~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~-~i~~vtIqvep~~~ 127 (152)
++...+++|+.++++. +++++.+++++.++ ++ ++.++|||+||++.
T Consensus 233 ~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 233 RNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp T-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 7699999999999985 78899999999998 67 99999999999863
No 9
>KOG1484|consensus
Probab=99.85 E-value=1.1e-20 Score=151.63 Aligned_cols=122 Identities=25% Similarity=0.438 Sum_probs=109.1
Q ss_pred CeeeehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHhCCCeeeeeeeEEE
Q psy11812 1 MICSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHID--IDSLCTELVEAFPNILNVHEIHVW 78 (152)
Q Consensus 1 ii~~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~--~~~I~~~i~~~~~gV~~Vh~l~~w 78 (152)
|++.+++.++|| .++||+|+++||++|+.+.+|++|+|..+||+++||+.. .++..+.+ ++.+||.++.+.|+|
T Consensus 225 iist~Li~~~gw---~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~~~~~l~~cl~~I-s~~~gV~~v~~~hFW 300 (354)
T KOG1484|consen 225 IISTLLIKLFGW---MIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPHLENSLKQCLRQI-STLDGVTSVQNPHFW 300 (354)
T ss_pred HHHHHHHHhcCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHh-hccccceeeccCcee
Confidence 356677888899 999999999999999999999999999999999999864 23333445 479999999999999
Q ss_pred eecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeeecC
Q psy11812 79 QLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFYE 126 (152)
Q Consensus 79 ~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep~~ 126 (152)
+++.+.+++++|+.|..+.+.+.+..++.+.+...|+++.|||+|.+.
T Consensus 301 t~~~g~~vGtlhl~V~~dade~~vl~~V~~~~~~~gV~~ltvQv~~~~ 348 (354)
T KOG1484|consen 301 TLESGSVVGTLHLQVSSDADEQSVLAHVTRKLEDAGVKDLTVQVEKEN 348 (354)
T ss_pred eccCCceEEEEEEEEecCcchhHHHHHHHHHHHhcceeEEEEEEeccc
Confidence 999999999999999999999999999999998889999999988765
No 10
>KOG1485|consensus
Probab=99.28 E-value=1.4e-11 Score=101.95 Aligned_cols=112 Identities=8% Similarity=0.040 Sum_probs=94.4
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLN 95 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~ 95 (152)
+|+||+.|+++|.+|++++++-..+++..|.|++.+...++++....++..+.+..++.++...+| ..+++++|+++++
T Consensus 288 ~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g-~~~~Vev~ivl~~ 366 (412)
T KOG1485|consen 288 YWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFG-SHYFVEVHIVLDE 366 (412)
T ss_pred hcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeeccc-ceEEEEEeeecCC
Confidence 699999999999999999999999999999998544444566666554566799999999999985 7889999999999
Q ss_pred CC---CHHHHHHHHHHHHhhC-CCceEEEEeeecCcc
Q psy11812 96 PQ---DYLCCTHQLIDFFYQQ-GISHVTIQPEFYEVR 128 (152)
Q Consensus 96 ~~---~~~~i~~~i~~~l~~~-~i~~vtIqvep~~~~ 128 (152)
+. .+|++.+.+++.++.. .+....+|+|.+..+
T Consensus 367 ~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~h 403 (412)
T KOG1485|consen 367 DLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLH 403 (412)
T ss_pred CCccHHHHHHHHHHHHHHhhcchheeeeeecCccccC
Confidence 85 5888999999888754 778889998877643
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.022 Score=45.46 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=75.0
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHH--HhCCCeeeeeeeEEEeecCCeEEEEEEEEe
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELV--EAFPNILNVHEIHVWQLTSNKTVSTAHIIF 93 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~--~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v 93 (152)
+++||..-.+++++++..=++.++.+.+..|+.+|++. .++++...- .+--|..+.| ..+-+. |...++++|..+
T Consensus 194 ~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~el-~q~ies~~~~~v~k~~f~~~~-~yvArV-Gr~l~IEi~fii 270 (314)
T COG3965 194 VYADPMVLALVCLVFIPLPLGTVKSALREILLMTPNEL-QQSIESHAHEIVEKYGFPSYH-VYVARV-GRGLFIEIHFII 270 (314)
T ss_pred cccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHhcCchHH-HHHHHh-ccceEEEEEEEe
Confidence 57999999999999999999999999999999999864 355554321 1112222222 234455 467799999999
Q ss_pred cCC------CCHHHHHHHHHHHHhhCCC-ceEEEEee
Q psy11812 94 LNP------QDYLCCTHQLIDFFYQQGI-SHVTIQPE 123 (152)
Q Consensus 94 ~~~------~~~~~i~~~i~~~l~~~~i-~~vtIqve 123 (152)
|++ .+.++|++++.+.|...|- .-+|+-+.
T Consensus 271 p~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT 307 (314)
T COG3965 271 PRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFT 307 (314)
T ss_pred CCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEe
Confidence 877 3578899999998874332 34666554
No 12
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=95.11 E-value=0.41 Score=31.99 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCC-----CHHHHHHHHHHHHh-hCCCceEEEEeeecC
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ-----DYLCCTHQLIDFFY-QQGISHVTIQPEFYE 126 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~-----~~~~i~~~i~~~l~-~~~i~~vtIqvep~~ 126 (152)
-..+|++.+ .++||+.+-..+.+..-+ +.-.+.+++++.++. +..++.+++++.|+ .+|+. +.|++-+.+
T Consensus 5 fP~~Ie~vl-~~~~~~~~~y~i~v~~~~-~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~g 80 (96)
T PF14535_consen 5 FPSQIEEVL-REFPEVSPEYQIVVTREG-GLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPPG 80 (96)
T ss_dssp -HHHHHHHH-CTSTTEEEEEEEEEEEET-TEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-TT
T ss_pred CHHHHHHHH-HhCcCCCCcEEEEEEcCC-CCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECCC
Confidence 457888988 699999988899999865 566799999998874 35678899999998 57885 677777665
No 13
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=89.87 E-value=0.66 Score=36.29 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTI 49 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~ 49 (152)
..++++++++.|++++..++.++++++..|++..
T Consensus 55 ~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~ 88 (268)
T TIGR01297 55 GRAEILAALLNGLFLVVVALFILYEAIERLINPE 88 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999999754
No 14
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=85.39 E-value=2.6 Score=34.23 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHI 53 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~ 53 (152)
.-+..++|++++++|+.+|+.++++++..++...+.+.
T Consensus 78 ~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~ 115 (304)
T COG0053 78 GKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEP 115 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 67999999999999999999999999999998554443
No 15
>PRK03557 zinc transporter ZitB; Provisional
Probab=83.51 E-value=2.1 Score=34.70 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
..+.++.+++.+++++..++.++++++..|+...+
T Consensus 84 ~r~E~l~al~~~~~l~~~~~~i~~eai~~l~~~~~ 118 (312)
T PRK03557 84 LRLTTLAAFVNAIALVVITILIVWEAIERFRTPRP 118 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 78999999999999999999999999999986543
No 16
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=82.10 E-value=13 Score=24.91 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=30.4
Q ss_pred eEEEeecCCeEEEEEEEEecCCCCHH----HHHHHHHHHHhhC-CC--ceEEEEee
Q psy11812 75 IHVWQLTSNKTVSTAHIIFLNPQDYL----CCTHQLIDFFYQQ-GI--SHVTIQPE 123 (152)
Q Consensus 75 l~~w~~~~~~~~~~~hv~v~~~~~~~----~i~~~i~~~l~~~-~i--~~vtIqve 123 (152)
+++..-.++.+.+++++.+..+.... ++.++|++.+.++ |+ ..+.|+++
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 45554216788899999999886544 4555555555433 54 45555543
No 17
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=81.84 E-value=3 Score=33.52 Aligned_cols=35 Identities=6% Similarity=0.090 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
.-+.++++++.+++++..++.++.+++..|+...+
T Consensus 76 ~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~~~~ 110 (299)
T PRK09509 76 GKAESLAALAQSMFISGSALFLFLTGIQHLISPTP 110 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 67999999999999999999999999999997544
No 18
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=79.69 E-value=18 Score=26.56 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-C-CCceEEEEeeec
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-Q-GISHVTIQPEFY 125 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~-~i~~vtIqvep~ 125 (152)
.+++.+.+ .++||| .+-.+--. ++..++-+.+. .......++.++|++.+++ + ++.+|.|--+|.
T Consensus 77 a~~i~~~v-~~~~~V---~~A~vvv~-~~~a~Vav~~~-~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 77 ADRIANRV-KKVPGV---EDATVVVT-DDNAYVAVDLD-FNRFNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHH-hcCCCc---eEEEEEEE-CCEEEEEEEec-ccccchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 35666666 577775 55555554 57777777776 3356678899999999984 4 667887766654
No 19
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=72.60 E-value=25 Score=23.35 Aligned_cols=67 Identities=12% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEEE
Q psy11812 51 NHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVTI 120 (152)
Q Consensus 51 ~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vtI 120 (152)
++.+++++++.+.+..|+-..++....-.++-+-.++.+.+.++++.. -.+.+++.++++ |+.++-|
T Consensus 15 ~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g---~td~lee~i~~ve~V~svev 82 (88)
T TIGR00489 15 PDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEG---GTEAAEESLSGIEGVESVEV 82 (88)
T ss_pred CccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCc---ChHHHHHHHhcCCCccEEEE
Confidence 456788998888656777677788888888888888999998877642 126667777654 7766544
No 20
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=72.14 E-value=2.9 Score=24.58 Aligned_cols=15 Identities=13% Similarity=0.578 Sum_probs=11.8
Q ss_pred cchhHHHHHHHHHHH
Q psy11812 16 KYVDPILSIISALLL 30 (152)
Q Consensus 16 ~~~Dpi~si~IallI 30 (152)
.++||+.|+++++.=
T Consensus 5 r~lDP~~av~iG~~a 19 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSA 19 (47)
T ss_pred hhhhhHHHHHHHHHH
Confidence 479999999887653
No 21
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=69.91 E-value=25 Score=22.10 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCC
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGI 115 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i 115 (152)
..++-+.+ .+. | .++.+++...++ +.+.+.+.+.++++ +..++.+.+++.-+++|.
T Consensus 16 v~~v~~~l-~~~-g-~ni~d~~~~~~~-~~f~~~~~v~~~~~-~~~~l~~~L~~l~~~~~l 71 (76)
T PF13740_consen 16 VAAVTGVL-AEH-G-CNIEDSRQAVLG-GRFTLIMLVSIPED-SLERLESALEELAEELGL 71 (76)
T ss_dssp HHHHHHHH-HCT-T--EEEEEEEEEET-TEEEEEEEEEESHH-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHH-HHC-C-CcEEEEEEEEEc-CeEEEEEEEEeCcc-cHHHHHHHHHHHHHHCCc
Confidence 57777776 444 4 489999999985 68888999988833 445555555554445555
No 22
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=68.51 E-value=39 Score=24.50 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.5
Q ss_pred eeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeeec
Q psy11812 72 VHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFY 125 (152)
Q Consensus 72 Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep~ 125 (152)
|+++.+- ++.+.+.+.+-...-...+.+.+.+++.|+..|+..+.|++.-.
T Consensus 17 Vr~V~v~---gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~ 67 (146)
T TIGR02159 17 VREVDVD---GGGVVVKFTPTYSGCPALEVIRQDIRDAVRALGVEVVEVSTSLD 67 (146)
T ss_pred eeEEEEE---CCEEEEEEEeCCCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeC
Confidence 4444442 34555555444333345677999999999856887777665543
No 23
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=68.50 E-value=4.5 Score=26.75 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=22.7
Q ss_pred eeehHhhhCCCCccchhHH---HHHHHHHHHHHhHHHHHH
Q psy11812 3 CSIIVYLTDASVAKYVDPI---LSIISALLLLLFSYPFMR 39 (152)
Q Consensus 3 ~~li~~~~g~~~~~~~Dpi---~si~IallIl~~~~~l~~ 39 (152)
.|++.++.|| .+||+ .-++.+.+.++.+|+-+|
T Consensus 47 ~g~IL~~~gw----Rldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 47 YGLILWFQGW----RLDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred HHHHHHHHhh----cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677788 78999 555666666777766544
No 24
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=67.11 E-value=42 Score=25.14 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=36.1
Q ss_pred eeeeeEEEeecCC--eEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEeeecC
Q psy11812 71 NVHEIHVWQLTSN--KTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQPEFYE 126 (152)
Q Consensus 71 ~Vh~l~~w~~~~~--~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqvep~~ 126 (152)
-|+++.+-....+ ++.+++.+-.+.-.....+.+.+++.+.. .|+.++.|++....
T Consensus 99 lV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp 157 (174)
T TIGR03406 99 LVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFDP 157 (174)
T ss_pred CeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEecC
Confidence 3555655542123 55555555444445677899999999985 58988888877654
No 25
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=66.14 E-value=29 Score=32.92 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHh---------------ccCCCCCC---HHHHHHHHHHhCCCeeeeeeeEE
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILL---------------QTIPNHID---IDSLCTELVEAFPNILNVHEIHV 77 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Ll---------------d~~p~~~~---~~~I~~~i~~~~~gV~~Vh~l~~ 77 (152)
.+=-|++++++.++++..|+-.+..--..++ +.+|++++ .+.+++.+ ++++|| .+++.
T Consensus 7 ~i~~~~~~~~l~~~l~~~G~~~~~~lp~~~~P~~~~p~v~V~~~~pGas~~~ve~~vt~piE~~l-~~i~gv---~~i~S 82 (1025)
T PRK10614 7 FIYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSL-GRIAGV---NEMTS 82 (1025)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCHhhCCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHh-cCCCCc---eEEEE
Confidence 3445788888888888888887776666555 12221111 12344444 455555 55555
Q ss_pred EeecCCeEEEEEEEEecCCCCHHHHHHHHHHHH
Q psy11812 78 WQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFF 110 (152)
Q Consensus 78 w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l 110 (152)
... .+ ...+.++++.+.+......++++.+
T Consensus 83 ~s~-~G--~s~i~l~f~~~~d~~~a~~~v~~~v 112 (1025)
T PRK10614 83 SSS-LG--STRIILQFDFDRDINGAARDVQAAI 112 (1025)
T ss_pred Eec-CC--eEEEEEEEECCCChHHHHHHHHHHH
Confidence 543 23 3566667777766555555555554
No 26
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=63.98 E-value=9.2 Score=29.95 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=31.9
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTI 49 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~ 49 (152)
.-+.++++++.+++++..++-++.+++..+++..
T Consensus 64 ~r~e~l~~~~~~~~l~~~~~~~~~~si~~~~~~~ 97 (284)
T PF01545_consen 64 GRLEPLAALIVSILLIFLGLFLIVESIQRLISPH 97 (284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS
T ss_pred hhhhhHhhhhhhhhHhhhHHHHHHHHhhcccccc
Confidence 7899999999999999999999999999999763
No 27
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=63.24 E-value=42 Score=22.38 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEE
Q psy11812 51 NHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVT 119 (152)
Q Consensus 51 ~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vt 119 (152)
++.+++++++.+.+.+|.=..++..-.-.++-+-.++-+.+.+++. +. -.+.+++.|.+. |+.++-
T Consensus 15 ~evdl~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv~D~-Eg--~td~~ee~l~~vegV~sve 81 (88)
T COG2092 15 PEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDK-EG--GTDALEEALEEVEGVESVE 81 (88)
T ss_pred CCCCHHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEEccc-cc--CcHHHHHHHhhccCcceEE
Confidence 3567889988886566443445577777777788888888888433 32 345666777644 776554
No 28
>KOG0109|consensus
Probab=61.62 E-value=50 Score=27.13 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=58.2
Q ss_pred HHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEee
Q psy11812 44 ILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPE 123 (152)
Q Consensus 44 ~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqve 123 (152)
..++.-|++.+..+++... +..--|.+..=+ +..+-+||+-+. .++.+ |+. |+.|.++.+.|.||
T Consensus 5 LFIGNLp~~~~~~elr~lF-e~ygkVlECDIv--------KNYgFVHiEdkt--aaeda---irN-LhgYtLhg~nInVe 69 (346)
T KOG0109|consen 5 LFIGNLPREATEQELRSLF-EQYGKVLECDIV--------KNYGFVHIEDKT--AAEDA---IRN-LHGYTLHGVNINVE 69 (346)
T ss_pred hhccCCCcccchHHHHHHH-HhhCceEeeeee--------cccceEEeeccc--ccHHH---Hhh-cccceecceEEEEE
Confidence 4456677788888999887 677666554322 224667886321 22222 221 44456777888888
Q ss_pred ecCcc---------cCcCcCccchhhhcccccccc
Q psy11812 124 FYEVR---------LKVCPHIVNAVDRRLLKPYTA 149 (152)
Q Consensus 124 p~~~~---------~~~c~~~~~~~~~~~~~~~~~ 149 (152)
..... ...|..|++++-|-+-|||..
T Consensus 70 aSksKsk~stkl~vgNis~tctn~ElRa~fe~ygp 104 (346)
T KOG0109|consen 70 ASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGP 104 (346)
T ss_pred eccccCCCccccccCCCCccccCHHHhhhhcccCC
Confidence 87644 234889999999999998853
No 29
>KOG2802|consensus
Probab=60.88 E-value=15 Score=31.22 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=36.7
Q ss_pred HhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEE
Q psy11812 7 VYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTV 86 (152)
Q Consensus 7 ~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~ 86 (152)
..++|- |+.|++.|++|+.++... + .+++|.+.-.+|.+++-
T Consensus 383 ss~tgn---PIyD~~GSivvGaLLGmV-------------------------e----------~diyDvK~~diG~g~vR 424 (503)
T KOG2802|consen 383 SSITGN---PIYDSLGSIVVGALLGMV-------------------------E----------NDIYDVKATDIGLGKVR 424 (503)
T ss_pred HHhcCC---CCccccchHHHHHHHHHH-------------------------H----------HhhhhccceeeccceeE
Confidence 345666 899999999998876654 1 11466666677877877
Q ss_pred EEEEEEecCC
Q psy11812 87 STAHIIFLNP 96 (152)
Q Consensus 87 ~~~hv~v~~~ 96 (152)
..+.+.+++.
T Consensus 425 fKAE~DFdGr 434 (503)
T KOG2802|consen 425 FKAEVDFDGR 434 (503)
T ss_pred EEEEeccCch
Confidence 7777777765
No 30
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=60.71 E-value=78 Score=25.76 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=35.9
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCeeeeeee---------EEEe-------ecCCeEEEEEEEEecCCCCHHHHHHHHHH
Q psy11812 47 QTIPNHIDIDSLCTELVEAFPNILNVHEI---------HVWQ-------LTSNKTVSTAHIIFLNPQDYLCCTHQLID 108 (152)
Q Consensus 47 d~~p~~~~~~~I~~~i~~~~~gV~~Vh~l---------~~w~-------~~~~~~~~~~hv~v~~~~~~~~i~~~i~~ 108 (152)
+..+++.+.+.+++.+ ++.|||+++.-+ .=|- ++++-.--.+.|..+++.+..++.+++++
T Consensus 66 ~~~~~~~~~~~v~~~i-~~~~gV~~v~~~sre~~l~~L~~~lg~~~~~~l~~nPLP~~~vV~~~~p~~~~~i~~~l~~ 142 (297)
T COG2177 66 QIDADQDDAALVREKI-EGIPGVKSVRFISREEALKELQPWLGFGALLMLDENPLPDVFVVTPDDPPQVKAIAAALRD 142 (297)
T ss_pred ecCCChHHHHHHHHHH-hcCCCcceEEEeCHHHHHHHHHHHcCchhhhcCCCCCCCceEEEEeCCCccHHHHHHHHHc
Confidence 3344444567788888 699999888632 2222 11233344566666666666666666655
No 31
>PRK09579 multidrug efflux protein; Reviewed
Probab=60.68 E-value=1.1e+02 Score=29.00 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCHHHHHHHH----HHhCCCeeeeeeeEEEeecCCe
Q psy11812 19 DPILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDIDSLCTEL----VEAFPNILNVHEIHVWQLTSNK 84 (152)
Q Consensus 19 Dpi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~~~I~~~i----~~~~~gV~~Vh~l~~w~~~~~~ 84 (152)
=|+..+++.++++..|+-.+..--..++ +-.+ ++...+++++.+ .+++.+|.++.+++.....+
T Consensus 10 ~~~~~~~l~~~l~i~G~~~~~~lp~~~~P~~~~p~v~V~t~~pGaspe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G-- 87 (1017)
T PRK09579 10 RPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQN-- 87 (1017)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHhhCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC--
Confidence 4677788888888777776666555544 3221 223345544433 12355666677777777432
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHHH
Q psy11812 85 TVSTAHIIFLNPQDYLCCTHQLIDFF 110 (152)
Q Consensus 85 ~~~~~hv~v~~~~~~~~i~~~i~~~l 110 (152)
...+.++++.+.+.+....++++.+
T Consensus 88 -~s~I~v~f~~g~d~~~a~~~v~~~v 112 (1017)
T PRK09579 88 -FSIISIYARIGADSDRLFTELLAKA 112 (1017)
T ss_pred -eEEEEEEEECCCCHHHHHHHHHHHH
Confidence 5777788888877666666666665
No 32
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=57.55 E-value=28 Score=27.18 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=35.1
Q ss_pred eeeeeeEEEeecCCeEEEEEEEEecCCC--CHHHHHHHHHHHHhhCCCceEEEEeeecC
Q psy11812 70 LNVHEIHVWQLTSNKTVSTAHIIFLNPQ--DYLCCTHQLIDFFYQQGISHVTIQPEFYE 126 (152)
Q Consensus 70 ~~Vh~l~~w~~~~~~~~~~~hv~v~~~~--~~~~i~~~i~~~l~~~~i~~vtIqvep~~ 126 (152)
.++.++|+|..+ + .+.|+|+++. ..-.-.+.|.+.|++.|..++|+.++...
T Consensus 197 ~g~~~~rvr~~~-~----~a~ie~~~~~~~~~~~~~~~i~~~~~~~gf~~v~ldl~g~~ 250 (252)
T TIGR00268 197 AGVGQVRVRNYD-N----LAVIEVPEDELSKLLNEAEEVRDKFKDIGFRKVLIDLEGYR 250 (252)
T ss_pred cCCCeEEEEecC-C----eEEEEECHHHHHHHHhhHHHHHHHHHHcCCCeEEEccCCcc
Confidence 357889999874 2 3466777652 11111466777788889999999777654
No 33
>PF11062 DUF2863: Protein of unknown function (DUF2863); InterPro: IPR021292 This bacterial family of proteins have no known function.
Probab=54.73 E-value=5 Score=33.85 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEEeeecCcccCcCcCccchhhhcc
Q psy11812 98 DYLCCTHQLIDFFYQQGISHVTIQPEFYEVRLKVCPHIVNAVDRRL 143 (152)
Q Consensus 98 ~~~~i~~~i~~~l~~~~i~~vtIqvep~~~~~~~c~~~~~~~~~~~ 143 (152)
+.....++|...|++.||.++..+.+-.. .+.|-+|.-|.+++-
T Consensus 335 ~~~~~~~~I~a~Lre~GV~di~~~~~~f~--~E~CdDCGaPlypd~ 378 (398)
T PF11062_consen 335 ENPDPLEEIEALLRECGVTDIRRHAERFP--PEFCDDCGAPLYPDP 378 (398)
T ss_pred CCCCcHHHHHHHHHHcCcHHHHhhhccCC--chhcccCCCCCCCCC
Confidence 34457788999999999999988877666 568888888887654
No 34
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=54.50 E-value=62 Score=30.85 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCHHHHHHHH----HHhCCCeeeeeeeEEEeecCCe
Q psy11812 19 DPILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDIDSLCTEL----VEAFPNILNVHEIHVWQLTSNK 84 (152)
Q Consensus 19 Dpi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~~~I~~~i----~~~~~gV~~Vh~l~~w~~~~~~ 84 (152)
=|+..+++.++++..|+-.+..--..++ +-.. ++...+++++.+ .+++.+|.++.+++....+.+
T Consensus 8 ~pv~~~~l~~~l~i~G~~s~~~lp~~~~P~i~~p~v~V~t~ypGasp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G- 86 (1049)
T PRK15127 8 RPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTG- 86 (1049)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCHhhCCCCCCceEEEEEEeCCCCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCc-
Confidence 3677777777777777666655554444 3222 223344544433 124566667777777764112
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHHHh
Q psy11812 85 TVSTAHIIFLNPQDYLCCTHQLIDFFY 111 (152)
Q Consensus 85 ~~~~~hv~v~~~~~~~~i~~~i~~~l~ 111 (152)
...+.++++.+.+.+....++++.+.
T Consensus 87 -~s~I~v~f~~g~d~~~a~~~V~~~i~ 112 (1049)
T PRK15127 87 -TVQITLTFESGTDADIAQVQVQNKLQ 112 (1049)
T ss_pred -eEEEEEEEECCCChHHHHHHHHHHHH
Confidence 35566677777666666666666553
No 35
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.68 E-value=52 Score=20.40 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCC
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGI 115 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i 115 (152)
..++-+.+ .+ -| .++.+++...++ +.+.+.+.+.++++.+..++.+.++...++.|+
T Consensus 13 v~~vt~~l-a~-~~-~nI~dl~~~~~~-~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 13 TSALTEVL-AA-HG-VRILDVGQAVIH-GRLSLGILVQIPDSADSEALLKDLLFKAHELGL 69 (75)
T ss_pred HHHHHHHH-HH-CC-CCEEecccEEEc-CeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCc
Confidence 57787777 34 34 488899888875 577777888777666778888888877666665
No 36
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=53.47 E-value=1.8e+02 Score=27.76 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCHHHHHHHH----HHhCCCeeeeeeeEEEeecCC
Q psy11812 18 VDPILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDIDSLCTEL----VEAFPNILNVHEIHVWQLTSN 83 (152)
Q Consensus 18 ~Dpi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~~~I~~~i----~~~~~gV~~Vh~l~~w~~~~~ 83 (152)
==|+..+++.++++..|+-.+..--..++ +-.. ++...+++++.+ .+.+.+|.+|.+++..... +
T Consensus 18 ~~p~~~~~l~~~l~~~Gi~s~~~lp~~~~P~~~~p~v~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~-G 96 (1040)
T PRK10503 18 LRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSG-G 96 (1040)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhCCHhhCCCCCCCEEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecC-C
Confidence 34777888888887777776665555444 2221 223344444322 1235566667777777643 3
Q ss_pred eEEEEEEEEecCCCCHHHHHHHHHHHH
Q psy11812 84 KTVSTAHIIFLNPQDYLCCTHQLIDFF 110 (152)
Q Consensus 84 ~~~~~~hv~v~~~~~~~~i~~~i~~~l 110 (152)
...+.++++.+.+.+....++++.+
T Consensus 97 --~s~i~v~f~~g~d~~~a~~ev~~~i 121 (1040)
T PRK10503 97 --ASVITLQFQLTLPLDVAEQEVQAAI 121 (1040)
T ss_pred --eEEEEEEEECCCChHHHHHHHHHHH
Confidence 4666777777766555555666555
No 37
>PRK11023 outer membrane lipoprotein; Provisional
Probab=53.29 E-value=43 Score=25.23 Aligned_cols=69 Identities=9% Similarity=-0.037 Sum_probs=40.0
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCeeeeee-eEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHh-hCCCceEEEEeee
Q psy11812 47 QTIPNHIDIDSLCTELVEAFPNILNVHE-IHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFY-QQGISHVTIQPEF 124 (152)
Q Consensus 47 d~~p~~~~~~~I~~~i~~~~~gV~~Vh~-l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~~~i~~vtIqvep 124 (152)
+..|++...++..+.. .+++||.+|++ |++.. ..- +....+...|..+++..|. +-.+....|+++.
T Consensus 83 G~V~~~~~k~~A~~ia-~~v~GV~~V~N~l~V~~---~~~-------~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t 151 (191)
T PRK11023 83 GQSPNAELSERAKQIA-MGVEGVNEVYNEIRQGQ---PIG-------LGTASKDTWITTKVRSQLLTSDSVKSSNVKVTT 151 (191)
T ss_pred EEeCCHHHHHHHHHHH-hcCCCceeecceeeecc---ccc-------cccccCcHHHHHHHHHHHhcCCCCCcceEEEEE
Confidence 4455545556666666 68999988874 43322 110 1122344568899999885 4455555566665
Q ss_pred cC
Q psy11812 125 YE 126 (152)
Q Consensus 125 ~~ 126 (152)
.+
T Consensus 152 ~~ 153 (191)
T PRK11023 152 EN 153 (191)
T ss_pred EC
Confidence 43
No 38
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=53.07 E-value=52 Score=20.21 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=26.6
Q ss_pred eeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEEE
Q psy11812 72 VHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVTI 120 (152)
Q Consensus 72 Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vtI 120 (152)
|.++.+- ++++.+++.+-.+.......+.+++++.|+.. |+..+.|
T Consensus 26 V~~i~i~---~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 26 VRDISIE---GGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEEC---TCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred eeEEEEE---CCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3444443 45655544443222256788999999999864 8877654
No 39
>PRK09577 multidrug efflux protein; Reviewed
Probab=52.51 E-value=73 Score=30.33 Aligned_cols=88 Identities=7% Similarity=0.051 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCHHHHHHHH----HHhCCCeeeeeeeEEEeecCCeE
Q psy11812 20 PILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDIDSLCTEL----VEAFPNILNVHEIHVWQLTSNKT 85 (152)
Q Consensus 20 pi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~~~I~~~i----~~~~~gV~~Vh~l~~w~~~~~~~ 85 (152)
|+..+++.++++..|+--+...-..++ +-.. ++...+++++.+ .+++.+|.++.+++.-... +
T Consensus 9 p~~~~~l~~~l~~~Gi~~~~~lp~~~~P~i~~p~v~V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~-G-- 85 (1032)
T PRK09577 9 PVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSA-G-- 85 (1032)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCHhhCCCCCCCEEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecC-C--
Confidence 666777777777777666665544444 2211 122333333322 1234455556666666542 2
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHHH
Q psy11812 86 VSTAHIIFLNPQDYLCCTHQLIDFF 110 (152)
Q Consensus 86 ~~~~hv~v~~~~~~~~i~~~i~~~l 110 (152)
...+.++++.+.+.+....++++.+
T Consensus 86 ~s~I~v~f~~g~d~~~a~~~V~~~v 110 (1032)
T PRK09577 86 QASLSLTFKQGVNADLAAVEVQNRL 110 (1032)
T ss_pred eEEEEEEEECCCChHHHHHHHHHHH
Confidence 5778888888876665555565555
No 40
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=52.34 E-value=5.1 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=21.6
Q ss_pred HhccCCCCCCHHHHHHHHHHhCCCeeeeee
Q psy11812 45 LLQTIPNHIDIDSLCTELVEAFPNILNVHE 74 (152)
Q Consensus 45 Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~ 74 (152)
|.+..|+....+.+.+.+ ++++||.+|.+
T Consensus 30 L~G~v~s~~~~~~a~~~a-~~v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLA-RSVAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHH-HCC-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhh-ccCCCcCEEEE
Confidence 445667777778888888 79999998875
No 41
>PRK11118 putative monooxygenase; Provisional
Probab=50.45 E-value=79 Score=21.58 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCeeeeeeeEEEeecCCeEE-EEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeeec
Q psy11812 56 DSLCTELVEAFPNILNVHEIHVWQLTSNKTV-STAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFY 125 (152)
Q Consensus 56 ~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~-~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep~ 125 (152)
..+.+.| .+.||. -=++|+.+.+.-. ..+- .+++...++...++-.++|+.+|+.++..++-..
T Consensus 24 ~~LA~sI-~~EpGl----iWKIWTen~~t~eaGGiY-lF~~e~~a~aYl~mH~aRL~~~Gv~~v~~kiFdi 88 (100)
T PRK11118 24 KPLAESI-NEEPGF----IWKIWTENEKTQEAGGIY-LFEDEASAEAYLEMHTARLKNFGVEEVRAKIFDV 88 (100)
T ss_pred HHHHHHH-hcCCCc----eEEEeecCCCCcccceEE-EECCHHHHHHHHHHHHHHHHhcCCCeeEEEEEec
Confidence 3445566 578885 3578887655432 3333 3566667787878877888889999988876543
No 42
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=45.93 E-value=87 Score=20.76 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEEE
Q psy11812 51 NHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVTI 120 (152)
Q Consensus 51 ~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vtI 120 (152)
++.+++++++.+.+..++-........-.++-+-..+.+.+.+++..- -.+.+++.++++ ++.++-|
T Consensus 15 ~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~---~td~lee~i~~~e~Vqsvei 82 (88)
T PRK00435 15 PEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEG---GTEPVEEAFANVEGVESVEV 82 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCc---CcHHHHHHHhccCCCcEEEE
Confidence 456788888888555666666777777777777888888888877632 125566666655 6766544
No 43
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=45.73 E-value=1.3e+02 Score=28.67 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCHHHHHHHH----HHhCCCeeeeeeeEEEeecCCeE
Q psy11812 20 PILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDIDSLCTEL----VEAFPNILNVHEIHVWQLTSNKT 85 (152)
Q Consensus 20 pi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~~~I~~~i----~~~~~gV~~Vh~l~~w~~~~~~~ 85 (152)
|+..+++.++++..|+-.+..--..++ +-.. ++...+++++.+ .+++.+|.++.+++......+
T Consensus 9 p~~~~ll~~~l~~~G~~s~~~lp~~~~P~i~~p~v~V~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G-- 86 (1037)
T PRK10555 9 PIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTG-- 86 (1037)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCHhhCCCCCCcEEEEEEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCC--
Confidence 566666666666666655554444443 3222 222334444332 123556666677777663122
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHHHh
Q psy11812 86 VSTAHIIFLNPQDYLCCTHQLIDFFY 111 (152)
Q Consensus 86 ~~~~hv~v~~~~~~~~i~~~i~~~l~ 111 (152)
...+.++++.+.+.++...++++.+.
T Consensus 87 ~s~i~v~f~~g~d~~~a~~~V~~~v~ 112 (1037)
T PRK10555 87 QASVTLSFKAGTDPDEAVQQVQNQLQ 112 (1037)
T ss_pred eEEEEEEEECCCCHHHHHHHHHHHHH
Confidence 45667777777776666666666653
No 44
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=45.15 E-value=86 Score=20.48 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHH-hCCCeeeeeeeEEEeec---CCeEEEEEEEEecCC------CCHHHHHHHHHHHHh-hCCC
Q psy11812 51 NHIDIDSLCTELVE-AFPNILNVHEIHVWQLT---SNKTVSTAHIIFLNP------QDYLCCTHQLIDFFY-QQGI 115 (152)
Q Consensus 51 ~~~~~~~I~~~i~~-~~~gV~~Vh~l~~w~~~---~~~~~~~~hv~v~~~------~~~~~i~~~i~~~l~-~~~i 115 (152)
++...+++.+.+.+ ..+-+.+|.=+-+++-. .+..-+.+.+...+. ++.+++.+++.+.|+ ++|+
T Consensus 16 ~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~ 91 (94)
T PF03147_consen 16 EDVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGA 91 (94)
T ss_dssp TTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-
T ss_pred CCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 34556666666631 23558888888888732 256777788877765 256778888888886 6775
No 45
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.82 E-value=27 Score=25.06 Aligned_cols=29 Identities=0% Similarity=0.045 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYI 44 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~ 44 (152)
.|.=++++++|+++|.+...++...+++-
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 57889999999999999999988877765
No 46
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=43.68 E-value=67 Score=23.59 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=27.4
Q ss_pred eeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHh-hC--CCceEEEEeeec
Q psy11812 74 EIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFY-QQ--GISHVTIQPEFY 125 (152)
Q Consensus 74 ~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~~--~i~~vtIqvep~ 125 (152)
--.+|+ |..-+++--.+.+++........--++...| .| ++.++.+|++|.
T Consensus 73 AQaVWQ-GdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~ 126 (161)
T PF09390_consen 73 AQAVWQ-GDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPE 126 (161)
T ss_dssp EEEEE--SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHHTT-SEEEE---TH
T ss_pred hhHHhc-CCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhccceEEEEeeCCHH
Confidence 457898 6555556666666666655554445555555 34 899999999984
No 47
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=43.18 E-value=90 Score=20.16 Aligned_cols=55 Identities=7% Similarity=-0.039 Sum_probs=34.2
Q ss_pred eeeeeeEEEeecCCeEEEEEEEEecCC---CCHHHHHHHHHHHHh-hCCCceEEEEe--eecC
Q psy11812 70 LNVHEIHVWQLTSNKTVSTAHIIFLNP---QDYLCCTHQLIDFFY-QQGISHVTIQP--EFYE 126 (152)
Q Consensus 70 ~~Vh~l~~w~~~~~~~~~~~hv~v~~~---~~~~~i~~~i~~~l~-~~~i~~vtIqv--ep~~ 126 (152)
.++.++.+.+. ++.+.+.+|..-++- ..... .+++++.|+ .+++.+..|++ ++..
T Consensus 18 agis~IeI~Rt-~~~i~I~I~tarPg~vIG~~G~~-i~~L~~~L~k~~~~~~~~i~v~~~~v~ 78 (81)
T cd02413 18 DGYSGVEVRVT-PTRTEIIIRATRTQNVLGEKGRR-IRELTSLVQKRFNFPEGSVELYAEKVA 78 (81)
T ss_pred CCeeeEEEEEc-CCeEEEEEEeCCCceEECCCchh-HHHHHHHHHHHhCCCCCeEEEEEEEcc
Confidence 46788888884 678778888754443 13333 356666665 46776666666 6543
No 48
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=41.60 E-value=62 Score=21.77 Aligned_cols=28 Identities=4% Similarity=-0.128 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEeeecC
Q psy11812 99 YLCCTHQLIDFFYQQGISHVTIQPEFYE 126 (152)
Q Consensus 99 ~~~i~~~i~~~l~~~~i~~vtIqvep~~ 126 (152)
.++|...|++.|+++|+.++.|.++-.+
T Consensus 42 G~~Ir~~v~etL~~lgV~~~~v~v~DkG 69 (92)
T TIGR01608 42 GDDIESTVKETLKLLGVENAVVKVVDKG 69 (92)
T ss_pred hHHHHHHHHHHHHHcCCceEEEEEEeCC
Confidence 5779999999999999999999988766
No 49
>COG5547 Small integral membrane protein [Function unknown]
Probab=41.59 E-value=40 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=18.8
Q ss_pred hCCCCccchhHHHHHHHHHHHHHhHH
Q psy11812 10 TDASVAKYVDPILSIISALLLLLFSY 35 (152)
Q Consensus 10 ~g~~~~~~~Dpi~si~IallIl~~~~ 35 (152)
+-| |++-.++++++|++++--|+
T Consensus 7 fky---pIIgglvglliAili~t~Gf 29 (62)
T COG5547 7 FKY---PIIGGLVGLLIAILILTFGF 29 (62)
T ss_pred hcc---chHHHHHHHHHHHHHHHHHH
Confidence 456 89999999999998886664
No 50
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=40.85 E-value=1e+02 Score=21.20 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHHhHHHH--------HHHHHHHHhccC-CCCC----CHHHHHHHHHHhCCCeeeeeeeEEEeecCC
Q psy11812 17 YVDPILSIISALLLLLFSYPF--------MRDAGYILLQTI-PNHI----DIDSLCTELVEAFPNILNVHEIHVWQLTSN 83 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l--------~~~s~~~Lld~~-p~~~----~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~ 83 (152)
..|.+=|+..+++.....-+. .-..+.-|++.. |.+. ....|++++ ...|.|.+|.++-+-. .++
T Consensus 20 ~vdg~EAl~qwi~k~L~TeR~~~~iYs~~yG~ele~lig~~~~~~~~~sEi~r~I~EaL-~~d~rI~~V~~f~f~~-~~~ 97 (112)
T PF10934_consen 20 IVDGLEALKQWIYKALNTERYRYLIYSWDYGSELEDLIGKNYPREYVESEIEREIEEAL-LQDPRITSVENFSFEW-EGD 97 (112)
T ss_pred EECcHHHHHHHHHHHhCCcccceeccccccchhHHHHhcCCCChHHHHHHHHHHHHHHH-hcCCCcceEEEEEEEE-ECC
Confidence 455666666655544332111 112345567662 2221 135677787 4899999999999966 567
Q ss_pred eEEEEEEEEe
Q psy11812 84 KTVSTAHIIF 93 (152)
Q Consensus 84 ~~~~~~hv~v 93 (152)
...+++.|..
T Consensus 98 ~l~v~f~V~t 107 (112)
T PF10934_consen 98 SLYVSFTVTT 107 (112)
T ss_pred EEEEEEEEEE
Confidence 8888887754
No 51
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=39.53 E-value=37 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
=--|+.+++.++|-++..+-+---+..+|||..+
T Consensus 38 GTtp~Mg~~m~lf~vfl~iileiyNssvlld~v~ 71 (73)
T PLN00055 38 GTTPLMGVAMALFAVFLSIILEIYNSSVLLDGIS 71 (73)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhccceeecCcc
Confidence 4568899999999888888777777778887654
No 52
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=39.49 E-value=1.5e+02 Score=28.43 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=58.3
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCCC---------CCCHHHHH----HHHHHhCCCeeeeeeeEEEeec
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILL-QTIPN---------HIDIDSLC----TELVEAFPNILNVHEIHVWQLT 81 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Ll-d~~p~---------~~~~~~I~----~~i~~~~~gV~~Vh~l~~w~~~ 81 (152)
.+=-|+.+.+++++|+..|+--+..--...+ +-.++ +.+.++++ +-+.+++.++.++..+..-...
T Consensus 6 fI~rpv~~~vl~i~i~l~G~~a~~~Lpv~~~P~i~~P~i~V~t~ypGAsae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~ 85 (1009)
T COG0841 6 FIRRPVFAWVLAILILLAGLLAIRTLPVAQYPDVAPPTIVVSATYPGASAETVEDSVTQPIEQQLNGLDGLDYMSSTSSS 85 (1009)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhCChhhCCCCCCCEEEEEEecCCCCHHHHHHHHhHHHHHHHhcCCCccEEEEEEcC
Confidence 4556899999999999988876655443333 32222 22333333 3332346677777778777754
Q ss_pred CCeEEEEEEEEecCCCCHH----HHHHHHHHHHhhC--CCceEEEEee
Q psy11812 82 SNKTVSTAHIIFLNPQDYL----CCTHQLIDFFYQQ--GISHVTIQPE 123 (152)
Q Consensus 82 ~~~~~~~~hv~v~~~~~~~----~i~~~i~~~l~~~--~i~~vtIqve 123 (152)
+. .++.+.++.+.+.+ ++..++.+.-.++ ++..-.+..+
T Consensus 86 -G~--s~itv~F~~~~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~ 130 (1009)
T COG0841 86 -GS--SSITVTFELGTDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVE 130 (1009)
T ss_pred -Cc--EEEEEEEeCCCChHHHHHHHHHHHHHHHhcCCCccCCCceEec
Confidence 44 44555556655444 4444444433233 4444455444
No 53
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=38.83 E-value=39 Score=21.03 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
=--|+.+++.++|.++..+-+---+..+|||..+
T Consensus 26 GTTplMgv~m~Lf~vFl~iiLeIYNsSvlLdgv~ 59 (64)
T PRK02624 26 GTTPVMAVFMVLFLVFLLIILQIYNQSLLLQGFS 59 (64)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcceeecCcc
Confidence 3568999999999998888887778888888765
No 54
>CHL00066 psbH photosystem II protein H
Probab=38.19 E-value=37 Score=21.75 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
=--|+.+++.++|-++..+-+---+..+|||..+
T Consensus 38 GTtp~Mgv~m~lf~vfl~iiLeiyNssvlld~v~ 71 (73)
T CHL00066 38 GTTPLMGVAMALFAVFLSIILEIYNSSVLLDGIS 71 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcceeecCcc
Confidence 4568899999999888888777777777777654
No 55
>PRK08201 hypothetical protein; Provisional
Probab=37.86 E-value=1.6e+02 Score=24.75 Aligned_cols=42 Identities=7% Similarity=-0.030 Sum_probs=31.2
Q ss_pred CCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEee
Q psy11812 82 SNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPE 123 (152)
Q Consensus 82 ~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqve 123 (152)
++...+.+.+++.++.+.+++..+|++.+++.....++++++
T Consensus 319 P~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~ 360 (456)
T PRK08201 319 PAEAHAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIR 360 (456)
T ss_pred CcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 667788888889999999999999999987422223455554
No 56
>KOG1485|consensus
Probab=36.20 E-value=56 Score=27.91 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=32.0
Q ss_pred CccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy11812 14 VAKYVDPILSIISALLLLLFSYPFMRDAGYILLQ 47 (152)
Q Consensus 14 ~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld 47 (152)
|+.-+.|+..+++|.++...|..+++++.+.|.+
T Consensus 178 G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~ 211 (412)
T KOG1485|consen 178 GRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVG 211 (412)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhc
Confidence 5578999999999999999999999999999988
No 57
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=35.99 E-value=1.2e+02 Score=25.92 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCeeeeeeeEEEeecCC---eEEEEEEEEecCCCCHHHHHHHHHHHHh-hC-CCce
Q psy11812 56 DSLCTELVEAFPNILNVHEIHVWQLTSN---KTVSTAHIIFLNPQDYLCCTHQLIDFFY-QQ-GISH 117 (152)
Q Consensus 56 ~~I~~~i~~~~~gV~~Vh~l~~w~~~~~---~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~~-~i~~ 117 (152)
.++.+.+.++++||..++=.-+.+.|.. -..+++.+...++.....+.++++..+. ++ ++..
T Consensus 320 ~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L~~i~~ 386 (399)
T PRK04439 320 NRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLVASIQVIPEDGVLISDVEKEVEEIVDEELANITK 386 (399)
T ss_pred HHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhchHH
Confidence 3444445456788777766666666532 2578888877776666777778887775 34 4443
No 58
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=35.48 E-value=2e+02 Score=27.49 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-CC---------CCCCHHHHHH----HHHHhCCCeeeeeeeEEEeecCCe
Q psy11812 19 DPILSIISALLLLLFSYPFMRDAGYILLQT-IP---------NHIDIDSLCT----ELVEAFPNILNVHEIHVWQLTSNK 84 (152)
Q Consensus 19 Dpi~si~IallIl~~~~~l~~~s~~~Lld~-~p---------~~~~~~~I~~----~i~~~~~gV~~Vh~l~~w~~~~~~ 84 (152)
=|+..+++.++++..|+-.+..--..++-. .. ++...+++++ -+.+.+.+|.++.+++.+..+.+
T Consensus 8 ~~~~~~~l~v~ll~~G~~~~~~lp~~~~P~~~~~~i~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g- 86 (1044)
T TIGR00915 8 RPIFAWVIAIIIMLAGALSILSLPVAQYPSIAPPAVTVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG- 86 (1044)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCHhhCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-
Confidence 356677777777777777666555544421 11 1222333332 22123445666777777753122
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHHH
Q psy11812 85 TVSTAHIIFLNPQDYLCCTHQLIDFF 110 (152)
Q Consensus 85 ~~~~~hv~v~~~~~~~~i~~~i~~~l 110 (152)
...+.+.++.+.+.+....++++.+
T Consensus 87 -~s~i~v~f~~~~d~~~a~~~v~~~l 111 (1044)
T TIGR00915 87 -SMTITLTFEQGTDPDIAQVQVQNKL 111 (1044)
T ss_pred -eEEEEEEEECCCChHHHHHHHHHHH
Confidence 4577777777766555455555554
No 59
>PRK10568 periplasmic protein; Provisional
Probab=35.29 E-value=1.2e+02 Score=22.92 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=41.2
Q ss_pred HhccCCCCCCHHHHHHHHHHhCCCeeeeee-eEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHh-h--CCCceEEE
Q psy11812 45 LLQTIPNHIDIDSLCTELVEAFPNILNVHE-IHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFY-Q--QGISHVTI 120 (152)
Q Consensus 45 Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~-l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~-~--~~i~~vtI 120 (152)
|++..++....++..+.+ .+++||.+|.+ |++.. .... .+....+...+..+++..|. . ....++.|
T Consensus 91 L~G~V~s~~~~~~a~~ia-~~v~GV~~V~n~l~v~~-~~~~-------~~~~~~~D~~It~~vk~~L~~~~~v~~~~I~V 161 (203)
T PRK10568 91 LSGFVESQAQAEEAVKVA-KGVEGVTSVSDKLHVRD-AKEQ-------SVKGYAGDTATTSEIKAKLLADDIVPSRKVKV 161 (203)
T ss_pred EEEEeCCHHHHHHHHHHH-HhCCCceEEEeeEEeec-cccc-------cccccCCcHHHHHHHHHHHhhCCCCCcceeEE
Confidence 456666666667777777 79999999985 33332 1100 11122344568888888874 3 24445665
Q ss_pred Eee
Q psy11812 121 QPE 123 (152)
Q Consensus 121 qve 123 (152)
.++
T Consensus 162 ~v~ 164 (203)
T PRK10568 162 ETT 164 (203)
T ss_pred EEe
Confidence 555
No 60
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=34.51 E-value=1.1e+02 Score=18.75 Aligned_cols=63 Identities=10% Similarity=0.182 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecC-----CeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEE
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTS-----NKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQ 121 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~-----~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIq 121 (152)
+.+|-+.+ .+ -| .++.+++...... +.+.+.+.+.+++..+..++.+.++..-+++|+. +.+|
T Consensus 13 v~~it~~l-~~-~~-~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~-~~~~ 80 (81)
T cd04869 13 VHEVTQFL-AQ-RN-INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVD-ISLE 80 (81)
T ss_pred HHHHHHHH-HH-cC-CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce-EEec
Confidence 57787776 44 34 3777777766531 4566777777776567788888887765666753 4443
No 61
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=34.50 E-value=2e+02 Score=21.69 Aligned_cols=66 Identities=9% Similarity=0.018 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecC-----CeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeee
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTS-----NKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEF 124 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~-----~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep 124 (152)
+.++-+.+ . --| .++.+|++...+. ..+.+.+.+.++++.+...+.+.+++.-.+.++ +.++++..
T Consensus 109 V~~vT~~l-a-~~~-iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL~v-d~~l~~~~ 179 (190)
T PRK11589 109 IERFTALF-D-SHH-MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTELNA-QGSINVVN 179 (190)
T ss_pred HHHHHHHH-H-HcC-CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHhCc-eEEEEEee
Confidence 35565655 2 344 3889999997752 256777888888888888888888887667766 45554433
No 62
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=34.48 E-value=45 Score=19.63 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCC-CCHHHHHHHHHH
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNP-QDYLCCTHQLID 108 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~-~~~~~i~~~i~~ 108 (152)
..+|++.+ +++|||.++ .+- +..+.+ .|..+++ ...+++.+.|++
T Consensus 13 ~~~v~~~l-~~~~GV~~v---~vd-~~~~~v----~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 13 AKKVEKAL-SKLPGVKSV---KVD-LETKTV----TVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHH-HTSTTEEEE---EEE-TTTTEE----EEEESTTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCCcEE---EEE-CCCCEE----EEEEecCCCCHHHHHHHHHH
Confidence 46788888 699998554 333 333333 3444554 356666666654
No 63
>PHA02568 J baseplate assembly protein; Provisional
Probab=34.15 E-value=1.6e+02 Score=23.96 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=37.1
Q ss_pred cCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCC--eEEEEEEEEecCCCCHHHHHHHHHHHHh
Q psy11812 48 TIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSN--KTVSTAHIIFLNPQDYLCCTHQLIDFFY 111 (152)
Q Consensus 48 ~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~--~~~~~~hv~v~~~~~~~~i~~~i~~~l~ 111 (152)
+.|++..++++++.+ + -+++.-+-+ ++.-.+.. .+.+++++.+.++.+...+.+.+++.++
T Consensus 179 G~ps~~Ll~~V~~~l-~-~e~vrPl~d-~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~ 241 (300)
T PHA02568 179 GTASEDLLAAVRAAL-N-REDVRPVTD-RVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQ 241 (300)
T ss_pred CCCCHHHHHHHHHHh-c-ccccCCCCC-EEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHH
Confidence 356666677888776 3 366665544 23333445 4566778888777666666666666554
No 64
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=34.12 E-value=1.1e+02 Score=18.38 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEeeecCcc
Q psy11812 100 LCCTHQLIDFFYQQGISHVTIQPEFYEVR 128 (152)
Q Consensus 100 ~~i~~~i~~~l~~~~i~~vtIqvep~~~~ 128 (152)
+++..+|+..+..-|+.+.|+.+-|.+..
T Consensus 2 E~lk~eI~~KI~anGV~~ftLeiV~nd~~ 30 (52)
T PF06649_consen 2 EELKAEIEQKIIANGVSSFTLEIVPNDQA 30 (52)
T ss_pred hHHHHHHHHHHHHcCCCceEEEEeeCccc
Confidence 45677788877766999999999888744
No 65
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=33.98 E-value=1.4e+02 Score=19.56 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=30.0
Q ss_pred CeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEeeecC
Q psy11812 83 NKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQPEFYE 126 (152)
Q Consensus 83 ~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqvep~~ 126 (152)
+.+.+++.+-.+.......+.+.+++.+.. .|+..+.|.+....
T Consensus 37 ~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 37 GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 455555555444445667788999999986 48888888776554
No 66
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=33.91 E-value=76 Score=16.61 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=18.1
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHH
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMR 39 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~ 39 (152)
.|+|-+.+..-+++.+|.-+-++|
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVALLR 25 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888887777777787777765
No 67
>PF05374 Mu-conotoxin: Mu-Conotoxin; InterPro: IPR008036 This entry represents Mu-type conotoxins. Cone snail toxins, conotoxins, are small peptides with disulphide connectivity, that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cystine knot scaffold. The knottin scaffold is a very special disulphide through disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network as well as specific amino acids in inter-cysteine loops provide specificity of conotoxin []. The cysteine arrangement is the same for omega, delta and kappa families, but omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangement, but the knottin scaffold is not observed. Conotoxin gm9a, a putative 27-residue polypeptide encoded by Conus gloriamaris, has been shown to adopt an inhibitory cystine knot motif constrained by three disulphide bonds [, ].Mu conotoxins target the voltage-gated sodium channels, preferential skeletal muscle [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangement [] and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1R9I_A 1GIB_A 1TCJ_A 1TCG_A 1TCK_A 1TCH_A.
Probab=33.20 E-value=37 Score=16.51 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=12.0
Q ss_pred cCcCccchhhhccccccc
Q psy11812 131 VCPHIVNAVDRRLLKPYT 148 (152)
Q Consensus 131 ~c~~~~~~~~~~~~~~~~ 148 (152)
.|...-..|+.|-|+|+.
T Consensus 2 ~CC~~Pk~CksR~CkP~~ 19 (22)
T PF05374_consen 2 DCCGPPKSCKSRQCKPQR 19 (22)
T ss_dssp TSSSSSTGGCSGGGTSST
T ss_pred cccCCCcccccccccccc
Confidence 354555667888888874
No 68
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=32.61 E-value=1.2e+02 Score=28.88 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCH--------HHHHHHHHHhCCCeeeeeeeEEE
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDI--------DSLCTELVEAFPNILNVHEIHVW 78 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~--------~~I~~~i~~~~~gV~~Vh~l~~w 78 (152)
.==|+..+++.++++..|+-.+..--..++ +-.. ++... +.+++.+ ++++||+++ +.+
T Consensus 10 l~~~~~~~~~~~~l~~~G~~~~~~lp~~~~P~~~~~~i~V~~~~pGas~~~ve~~vt~piE~~l-~~v~gv~~v---~S~ 85 (1051)
T TIGR00914 10 VAQRWLVLLATLVMAILGIWSYNRLPIDAVPDITNVQVQINTSAPGYSPLEVEQRVTYPIETAM-AGLPGLETT---RSL 85 (1051)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhCCcccCCCCCCcEEEEEEecCCCCHHHHHHHcCHHHHHHh-cCCCCeeEE---EEE
Confidence 445677888888888777766655444433 1111 11112 3455665 466666554 444
Q ss_pred eecCCeEEEEEEEEecCCCCHHHHHHHHHHHH
Q psy11812 79 QLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFF 110 (152)
Q Consensus 79 ~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l 110 (152)
.. .-...+.++++.+.+.....+++++.+
T Consensus 86 s~---~g~s~i~v~f~~~~d~~~a~~~v~~~v 114 (1051)
T TIGR00914 86 SR---YGLSQVTVIFKDGTDLYFARQLVNERL 114 (1051)
T ss_pred cc---CceEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 42 224667788887766655555555555
No 69
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=32.54 E-value=93 Score=18.91 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q psy11812 21 ILSIISALLLLLFSYPFMRDAGYILLQTI 49 (152)
Q Consensus 21 i~si~IallIl~~~~~l~~~s~~~Lld~~ 49 (152)
.++++-+++++..||+.+|+-++.=.|.+
T Consensus 11 FctvVcaLYLvsGGyk~IRnY~r~Kid~a 39 (59)
T PF07125_consen 11 FCTVVCALYLVSGGYKVIRNYFRRKIDDA 39 (59)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57888999999999999999999877654
No 70
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=32.50 E-value=54 Score=20.21 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEE
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHV 77 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~ 77 (152)
.++++.+.+ +++|||.+|...+.
T Consensus 50 ~L~~li~~L-~~i~gV~~V~R~~~ 72 (74)
T cd04877 50 KLQTLMPEI-RRIDGVEDVKTVPY 72 (74)
T ss_pred HHHHHHHHH-hCCCCceEEEEeec
Confidence 457777888 68999998887653
No 71
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=31.27 E-value=1.2e+02 Score=18.10 Aligned_cols=58 Identities=9% Similarity=0.110 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEE
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQ 121 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIq 121 (152)
..+++.+.+ .+.|+|..++.+ +| .+-+-+++.+++. .++.+-+.+.+.. .|+.++.-.
T Consensus 11 ~~~~~~~~l-~~~p~V~~~~~v-----tG-~~d~~~~v~~~d~---~~l~~~i~~~l~~~~gV~~~~t~ 69 (74)
T PF01037_consen 11 AYDEFAEAL-AEIPEVVECYSV-----TG-EYDLILKVRARDM---EELEEFIREKLRSIPGVRRTETS 69 (74)
T ss_dssp HHHHHHHHH-HTSTTEEEEEEE-----SS-SSSEEEEEEESSH---HHHHHHHHHTHHTSTTEEEEEEE
T ss_pred hHHHHHHHH-HcCCCEEEEEEE-----eC-CCCEEEEEEECCH---HHHHHHHHHHhhcCCCEEEEEEE
Confidence 368888888 699998776543 33 3345556655543 3444444454653 377665543
No 72
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=30.47 E-value=1.1e+02 Score=25.02 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=33.7
Q ss_pred hCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 10 TDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 10 ~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
||| ..+.-++|++=+++++..+.-+++|++..|..-.|
T Consensus 84 fGy---~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~ 121 (296)
T COG1230 84 FGY---KRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPP 121 (296)
T ss_pred ccH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 466 88999999999999999999999999999986444
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.09 E-value=1.3e+02 Score=18.06 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHH
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLI 107 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~ 107 (152)
.+.++.+.+ .+. | .++.++.......+...+.+.+++.+.....++.++++
T Consensus 12 ~L~~i~~~i-~~~-~-~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~ 62 (74)
T cd04887 12 MLGRVTTAI-GEA-G-GDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVR 62 (74)
T ss_pred hHHHHHHHH-HHc-C-CcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHh
Confidence 367787777 443 3 25666666664445666777777776655555555543
No 74
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=29.87 E-value=1.3e+02 Score=18.01 Aligned_cols=27 Identities=0% Similarity=0.037 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAGY 43 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~~ 43 (152)
+++-.-.+++.+...+.+++|||...+
T Consensus 24 ~i~~aw~vvv~v~gafigirlFKKf~s 50 (52)
T PF05371_consen 24 LIGYAWPVVVLVTGAFIGIRLFKKFAS 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 355556778888888899999998764
No 75
>COG5583 Uncharacterized small protein [Function unknown]
Probab=29.31 E-value=90 Score=18.76 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHh--hCCCceEEEE
Q psy11812 98 DYLCCTHQLIDFFY--QQGISHVTIQ 121 (152)
Q Consensus 98 ~~~~i~~~i~~~l~--~~~i~~vtIq 121 (152)
...++.++|++.|+ +||--.+|||
T Consensus 6 ~~~~~~ekI~~~Le~lkyGsV~ItVh 31 (54)
T COG5583 6 KDPEVIEKIKKALEGLKYGSVTITVH 31 (54)
T ss_pred cchHHHHHHHHHHhhcccceEEEEEE
Confidence 34668889999997 5765444443
No 76
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=29.25 E-value=53 Score=24.27 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=26.6
Q ss_pred eehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11812 4 SIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGY 43 (152)
Q Consensus 4 ~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~ 43 (152)
+.+..++|- .|.|.+++.++++++......+-|....
T Consensus 115 ~~fa~lfgg---~~~~~~~a~i~g~~~~~~~~~~~r~~~~ 151 (193)
T PF06738_consen 115 AAFALLFGG---SWIDMIVAFILGLLVGLLRQLLSRRRLN 151 (193)
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 334455666 6999999999999988877665554433
No 77
>PF12716 Apq12: Nuclear pore assembly and biogenesis; InterPro: IPR024316 This is a family of conserved fungal proteins involved in nuclear pore assembly []. APQ12 is an integral membrane protein of the nuclear envelope (NE) and endoplasmic reticulum. Its absence leads to a partial block in mRNA export and cold-sensitive defects in the growth and localisation of a subset of nucleoporins, particularly those asymmetrically localised to the cytoplasmic fibrils []. The defects in nuclear pore assembly appear to be due to defects in regulating membrane fluidity [].
Probab=28.84 E-value=1.3e+02 Score=17.75 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy11812 21 ILSIISALLLLLFSYPFMRDAGYILL 46 (152)
Q Consensus 21 i~si~IallIl~~~~~l~~~s~~~Ll 46 (152)
+.+++..+++++.+++++..+.+.-+
T Consensus 4 ~~~il~~l~~lyis~~il~~~~R~~~ 29 (54)
T PF12716_consen 4 LTSILFLLLILYISLKILDYARRVVI 29 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888776544
No 78
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=28.72 E-value=1.5e+02 Score=18.31 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeec-CCeEEEEEEEEecCCCCHHHHHHHH
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLT-SNKTVSTAHIIFLNPQDYLCCTHQL 106 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~-~~~~~~~~hv~v~~~~~~~~i~~~i 106 (152)
+.+|.+.+ .+ .| .++.++++.... ++...+.+.+++....+.+.+.+++
T Consensus 20 L~dI~~~i-~~-~~-~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L 69 (80)
T PF13291_consen 20 LADITSVI-SE-NG-VNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKL 69 (80)
T ss_dssp HHHHHHHH-HC-SS-SEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH-HH-CC-CCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHH
Confidence 56777777 43 34 488899998863 5678899999987654444444443
No 79
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=28.65 E-value=2.8e+02 Score=26.33 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHh-ccCC---------CCCCHHHHHHHHH----HhCCCeeeeeeeEEEeecCCe
Q psy11812 19 DPILSIISALLLLLFSYPFMRDAGYILL-QTIP---------NHIDIDSLCTELV----EAFPNILNVHEIHVWQLTSNK 84 (152)
Q Consensus 19 Dpi~si~IallIl~~~~~l~~~s~~~Ll-d~~p---------~~~~~~~I~~~i~----~~~~gV~~Vh~l~~w~~~~~~ 84 (152)
=|++.+++.+.++..|+-.+..--..++ +-.+ ++...+++++.+. +.+.++.++.+++..... +
T Consensus 8 ~~~~~~~l~~~~~~~G~~~~~~l~~~~~P~~~~p~i~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~-g- 85 (1021)
T PF00873_consen 8 RPVAVLLLFLALILFGIFSFFSLPVELFPDIDFPQISVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSRE-G- 85 (1021)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSBESSSS-SSSEEEEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETT-S-
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCChhhCCCCCccceEEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecC-C-
Confidence 3667767666666666654443322222 1111 2223344443221 123445555666666632 2
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHHHh
Q psy11812 85 TVSTAHIIFLNPQDYLCCTHQLIDFFY 111 (152)
Q Consensus 85 ~~~~~hv~v~~~~~~~~i~~~i~~~l~ 111 (152)
...+.++++.+.+.++...++++.+.
T Consensus 86 -~s~i~v~f~~~~d~~~a~~~v~~~i~ 111 (1021)
T PF00873_consen 86 -SSSITVEFDDGTDIDEALQEVREKID 111 (1021)
T ss_dssp -EEEEEEEESTTS-HHHHHHHHHHHHH
T ss_pred -cEEEEEEeccccCHHHHHHHHHHHHH
Confidence 57888999999888777778887774
No 80
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=28.41 E-value=3.1e+02 Score=21.97 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=44.6
Q ss_pred CCCHHHHHH----HHHHhCCCeeee--eeeEEEeecCCeEEEEEEEEecCCCC---HHHHHHHHHHHHhhCCC----ceE
Q psy11812 52 HIDIDSLCT----ELVEAFPNILNV--HEIHVWQLTSNKTVSTAHIIFLNPQD---YLCCTHQLIDFFYQQGI----SHV 118 (152)
Q Consensus 52 ~~~~~~I~~----~i~~~~~gV~~V--h~l~~w~~~~~~~~~~~hv~v~~~~~---~~~i~~~i~~~l~~~~i----~~v 118 (152)
+.+.+++++ .+ ++.|+|..= -.+++..++++.+...+..-++.... ..++..++++.+++.|+ ..-
T Consensus 195 ~~d~~~~~~il~~~~-~~~~~vl~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~ 273 (286)
T PRK10334 195 DSDIDQVKQILTNII-QSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQM 273 (286)
T ss_pred CCCHHHHHHHHHHHH-HhCCceecCCCCEEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCcCCCCCe
Confidence 344555443 33 578887642 34777888877777777777765531 24567778888864444 344
Q ss_pred EEEeeecC
Q psy11812 119 TIQPEFYE 126 (152)
Q Consensus 119 tIqvep~~ 126 (152)
++++++.+
T Consensus 274 ~v~~~~~~ 281 (286)
T PRK10334 274 DVNFKRVK 281 (286)
T ss_pred EEEeccCC
Confidence 55555443
No 81
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.92 E-value=71 Score=19.29 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHhCCCeeeeee
Q psy11812 54 DIDSLCTELVEAFPNILNVHE 74 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~ 74 (152)
.++++.+.+ +++|||.+|+-
T Consensus 55 ~l~~l~~~L-~~i~~V~~v~~ 74 (76)
T cd04888 55 DIDELLEEL-REIDGVEKVEL 74 (76)
T ss_pred HHHHHHHHH-hcCCCeEEEEE
Confidence 456777777 68888877753
No 82
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.85 E-value=61 Score=22.82 Aligned_cols=22 Identities=9% Similarity=0.236 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q psy11812 21 ILSIISALLLLLFSYPFMRDAG 42 (152)
Q Consensus 21 i~si~IallIl~~~~~l~~~s~ 42 (152)
+++++|+++|.+...+++..+.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccch
Confidence 5677788877777777766654
No 83
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=27.66 E-value=1.2e+02 Score=22.05 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=32.7
Q ss_pred eeEEEeecCCeEEEEEEEEecCCCC--HHHHHHHHHHHHhhCCCceEEEEeeecC
Q psy11812 74 EIHVWQLTSNKTVSTAHIIFLNPQD--YLCCTHQLIDFFYQQGISHVTIQPEFYE 126 (152)
Q Consensus 74 ~l~~w~~~~~~~~~~~hv~v~~~~~--~~~i~~~i~~~l~~~~i~~vtIqvep~~ 126 (152)
.+-++++ |.-++++.+.+|.... ...+...|++.+++ |--+++|+++...
T Consensus 20 ~vEikSv--N~R~Ldi~~rlP~~l~~lE~~ir~~i~~~l~R-GkV~v~i~~~~~~ 71 (159)
T PF03755_consen 20 SVEIKSV--NHRFLDISIRLPRELSSLEPEIRKLIRKKLSR-GKVEVSIRVERSS 71 (159)
T ss_pred EEEEEec--ccCceeeEEeCCHHHHHHHHHHHHHHHHhccc-ceEEEEEEEEECc
Confidence 4556666 3446899998887632 23455666665543 5557888888876
No 84
>PRK11677 hypothetical protein; Provisional
Probab=27.49 E-value=66 Score=23.11 Aligned_cols=26 Identities=4% Similarity=0.165 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHH
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAG 42 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~ 42 (152)
|+=++++++|+++|.+...++...+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 56678999999999998888766554
No 85
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=27.19 E-value=1.5e+02 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=29.1
Q ss_pred CeEEEEEEEEecCC-CCHHHHHHHHHHHHhhCCCceEEEEeee
Q psy11812 83 NKTVSTAHIIFLNP-QDYLCCTHQLIDFFYQQGISHVTIQPEF 124 (152)
Q Consensus 83 ~~~~~~~hv~v~~~-~~~~~i~~~i~~~l~~~~i~~vtIqvep 124 (152)
+.+.+.+.+..++. .+...+.++++...++.|+ ++.||-|.
T Consensus 41 ~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv-~V~vq~ed 82 (90)
T COG3830 41 GFFTMIMLVDISKEVVDFAALRDELAAEGKKLGV-DVRVQRED 82 (90)
T ss_pred hhceeeeEEcCChHhccHHHHHHHHHHHHHhcCc-EEEEeeHH
Confidence 35556666666654 5788898999888888887 46766553
No 86
>COG1279 Lysine efflux permease [General function prediction only]
Probab=26.55 E-value=1.1e+02 Score=23.60 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYI 44 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~ 44 (152)
|++.++.-..-++++++-|+..+|++.+.
T Consensus 66 p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 66 PWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999995
No 87
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.43 E-value=44 Score=22.74 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHhccCCCC-CCHHHHHHHHHHhCCCeeeeeeeEEE
Q psy11812 16 KYVDPILSIISALLLLLFSYPFM-RDAGYILLQTIPNH-IDIDSLCTELVEAFPNILNVHEIHVW 78 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~-~~s~~~Lld~~p~~-~~~~~I~~~i~~~~~gV~~Vh~l~~w 78 (152)
+++=++++++++++..+..-... ++.+..|-+..... .-+.++++.+ +..|.=.++|+|+..
T Consensus 10 ~ii~a~~~~~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l-~~LPt~~dv~~L~l~ 73 (106)
T PF10805_consen 10 GIIWAVFGIAGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKL-EHLPTRDDVHDLQLE 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHH
Confidence 66666666666666664443333 45555554443221 2356777887 688888888887765
No 88
>COG4280 Predicted membrane protein [Function unknown]
Probab=26.38 E-value=1.5e+02 Score=23.07 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q psy11812 22 LSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTEL 62 (152)
Q Consensus 22 ~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i 62 (152)
.-++++.++++-|++..|.+.+.+-+......+ |+.++.+
T Consensus 66 lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~e-e~leE~~ 105 (236)
T COG4280 66 LQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGE-EKLEEGI 105 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhccCch-hhHhhhh
Confidence 457788999999999999999999876554443 4455544
No 89
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=26.34 E-value=2.3e+02 Score=23.02 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC----------CC---CHHHHHHHHHHhCCCeeeeee---------eEE
Q psy11812 20 PILSIISALLLLLFSYPFMRDAGYILLQTIPN----------HI---DIDSLCTELVEAFPNILNVHE---------IHV 77 (152)
Q Consensus 20 pi~si~IallIl~~~~~l~~~s~~~Lld~~p~----------~~---~~~~I~~~i~~~~~gV~~Vh~---------l~~ 77 (152)
.++++.++++++... -++..+++.+.+...+ +. +.+++++.+ ++.|||.+++- ++-
T Consensus 34 si~ti~i~L~l~g~~-~l~~~n~~~~~~~~~~~~~i~vyl~~~~~~~~~~~l~~~l-~~~~~V~~v~~iskeeAl~~l~~ 111 (309)
T TIGR00439 34 TLIVIAVSLTLPLVM-YLGIKNGQSALTQLYPSPQITVYLEKALAQSDADTVVSLL-TRDKGVENINYISREDGLAEFQS 111 (309)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCceEEEEeCCCCCHHHHHHHHHHH-hCCCCccEEEEECHHHHHHHHHH
Confidence 344555555555444 4444555555543222 11 235788888 78999988763 232
Q ss_pred EeecC---------CeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceE
Q psy11812 78 WQLTS---------NKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHV 118 (152)
Q Consensus 78 w~~~~---------~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~v 118 (152)
|. +. +-.-.++.|.++++.+..+..+++++.+++ .|+.++
T Consensus 112 ~~-g~~~~l~~l~~nPLP~si~V~l~~~~~~~~~~~~l~~~l~~~~gV~~v 161 (309)
T TIGR00439 112 WS-GFGNLLSMLDGNPLPAVFIVTPDPAFTPAEMQAILRDNITKIPGVEEV 161 (309)
T ss_pred hc-CCchhhhhcccCCCCCeEEEEeCCCCChHHHHHHHHHHHhcCCCCCcc
Confidence 31 21 111223444444444555666777777764 366655
No 90
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=25.88 E-value=2.3e+02 Score=22.94 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC----------CC---CHHHHHHHHHHhCCCeeeeee
Q psy11812 19 DPILSIISALLLLLFSYPFMRDAGYILLQTIPN----------HI---DIDSLCTELVEAFPNILNVHE 74 (152)
Q Consensus 19 Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~----------~~---~~~~I~~~i~~~~~gV~~Vh~ 74 (152)
=.++++.++++++...+ ++..+++.+.+...+ +. +.+++.+.+ ++.|||.+|.-
T Consensus 33 ~si~~i~i~L~l~g~~~-l~~~n~~~~~~~~~~~~ei~vyl~~~~~~~~~~~l~~~L-~~~~~V~~v~~ 99 (309)
T PRK11026 33 LTVMVIAISLTLPSVCY-LVWKNVNQAATQWYPSPQLTVYLDKTLDDDAANAVVEQL-KAEDGVEKVNY 99 (309)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCceEEEEECCCCCHHHHHHHHHHH-hCCCCcceEEE
Confidence 34456666666655554 444444444433221 22 235777888 68999888763
No 91
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=25.76 E-value=1.7e+02 Score=24.90 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCeeeeeeeEEEeecC---CeEEEEEEEEecCCCCHHHHHHHHHHHHh
Q psy11812 57 SLCTELVEAFPNILNVHEIHVWQLTS---NKTVSTAHIIFLNPQDYLCCTHQLIDFFY 111 (152)
Q Consensus 57 ~I~~~i~~~~~gV~~Vh~l~~w~~~~---~~~~~~~hv~v~~~~~~~~i~~~i~~~l~ 111 (152)
++.+.+.++++||..++=.-+.+.|. +-..+++++...++.....+..+++..+.
T Consensus 321 ~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~~~~v~i~~~~~~~~~~~~~~v~~Ii~ 378 (396)
T PF01941_consen 321 EIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQIASVQIIPEDGVLLEDVEKEVEEIID 378 (396)
T ss_pred HHHHHHHHhcCCcceEEEEEccccCCCCCCCeEEEEEEecCCCCchHHHHHHHHHHHH
Confidence 44444444577776666555555542 12578888877777666777777777765
No 92
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=25.05 E-value=2e+02 Score=18.62 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=30.6
Q ss_pred eeeeeeEEEeecCCeEEEEEEEEecCC--CCHHHHHHHHHHHHhh
Q psy11812 70 LNVHEIHVWQLTSNKTVSTAHIIFLNP--QDYLCCTHQLIDFFYQ 112 (152)
Q Consensus 70 ~~Vh~l~~w~~~~~~~~~~~hv~v~~~--~~~~~i~~~i~~~l~~ 112 (152)
.+....+++.+..+.+.+++.+.+..+ .....+...+...+++
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPPSSAPPADIEEALQNALQQ 95 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETTT-S-HHHHHHHHHHHHCC
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 446667777777678999999998555 3466677777777754
No 93
>PRK09104 hypothetical protein; Validated
Probab=24.86 E-value=3.5e+02 Score=22.85 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=26.2
Q ss_pred CCeEEEEEEEEecCCCCHHHHHHHHHHHHhh
Q psy11812 82 SNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ 112 (152)
Q Consensus 82 ~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~ 112 (152)
++...+.+.+++.++.+.+++.+++++.+.+
T Consensus 327 P~~~~~~~diR~~p~~~~~~v~~~i~~~l~~ 357 (464)
T PRK09104 327 PAEASAKVSFRLVGGQDPAKIREAFRAYVRA 357 (464)
T ss_pred cCceEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5567788888888998999999999999864
No 94
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=24.26 E-value=1.5e+02 Score=19.16 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=25.0
Q ss_pred CCeEEEEEEEEecCCCCHHHHHHHHHHHHhh
Q psy11812 82 SNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ 112 (152)
Q Consensus 82 ~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~ 112 (152)
+++..+.+.+++.+..+.+++.+.+++.+++
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 4667788888888888888999999888753
No 95
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=24.17 E-value=2.4e+02 Score=19.15 Aligned_cols=62 Identities=8% Similarity=0.127 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCeeeeeeeEEEeecCCe-EEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeee
Q psy11812 57 SLCTELVEAFPNILNVHEIHVWQLTSNK-TVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEF 124 (152)
Q Consensus 57 ~I~~~i~~~~~gV~~Vh~l~~w~~~~~~-~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep 124 (152)
.+.+.+ .+.||.. =++|..+.+. -+.-+-+ ++...+++...++=..+|+.+|+.+++.++-.
T Consensus 22 ~LA~sI-~~ePGli----wKiWten~~t~eaGGiYL-Fe~e~~A~aY~~~h~aRl~~~Gv~~i~~kiFd 84 (97)
T PF08803_consen 22 DLAESI-NQEPGLI----WKIWTENEETGEAGGIYL-FEDEASAEAYLEMHTARLAAFGVTEIRGKIFD 84 (97)
T ss_dssp HHHHHH-TTSTTEE----EEEEEEETTTTEEEEEEE-ESSHHHHHHHHHHHHHHHGGGTSS--EEEEEE
T ss_pred HHHHHH-hhCCCeE----EEEEEecCCCCccceEEE-ECCHHHHHHHHHHHHHHHHhcCccceEEEEEe
Confidence 344566 5789953 3667766543 3444444 56666677777777788888999999887643
No 96
>PRK06164 acyl-CoA synthetase; Validated
Probab=24.00 E-value=4.4e+02 Score=22.20 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCC--CCHHHHHHHHHHHHhhCCCceEEEEee
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNP--QDYLCCTHQLIDFFYQQGISHVTIQPE 123 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~--~~~~~i~~~i~~~l~~~~i~~vtIqve 123 (152)
+..++|++.+ .+.|+|.++.-+-+...+ +.. ..+-+...++ .+.+++.+.+++.+..+.+-...+.++
T Consensus 439 i~p~eIE~~l-~~~~~v~~~~v~~~~~~~-~~~-~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~ 508 (540)
T PRK06164 439 VNPAEIEHAL-EALPGVAAAQVVGATRDG-KTV-PVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVE 508 (540)
T ss_pred cCHHHHHHHH-HhCCCceeEEEEecCCCC-cee-EEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEec
Confidence 5678999998 689998876555444322 222 2222333333 456778888887775444444444443
No 97
>TIGR01606 holin_BlyA holin, BlyA family. This family represents a BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage. This protein was previously proposed to be an hemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C-terminus.
Probab=23.41 E-value=1.9e+02 Score=17.92 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHH---HHHHHHHHHHhcc
Q psy11812 22 LSIISALLLLLFSY---PFMRDAGYILLQT 48 (152)
Q Consensus 22 ~si~IallIl~~~~---~l~~~s~~~Lld~ 48 (152)
..++++++|+.... |++|+...+|+++
T Consensus 21 lmifi~~~IL~~~l~~kP~~kd~Lsili~K 50 (63)
T TIGR01606 21 LMIFISIFILSLGLIFKPVIKDMLSILISK 50 (63)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566666665543 7889998888875
No 98
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=23.16 E-value=2.8e+02 Score=19.67 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEee
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQPE 123 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqve 123 (152)
..+++.+.+ .+.|+|..++.+- |+. -+-+++.+++.. ++.+-+.+.+.. -||.++.-++-
T Consensus 82 ~~~~~~~~l-~~~p~V~~~~~~t----G~~--dl~~~v~~~d~~---~l~~~~~~~l~~~~gV~~~~t~iv 142 (153)
T PRK11179 82 DYPSALAKL-ESLDEVVEAYYTT----GHY--SIFIKVMCRSID---ALQHVLINKIQTIDEIQSTETLIS 142 (153)
T ss_pred cHHHHHHHH-hCCCCEEEEEEcc----cCC--CEEEEEEECCHH---HHHHHHHHHhhcCCCeeeEEEEEE
Confidence 467788888 6899987776552 333 344555555433 343444445543 37765544443
No 99
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=22.13 E-value=1.3e+02 Score=18.05 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q psy11812 21 ILSIISALLLLLFSYPFMR 39 (152)
Q Consensus 21 i~si~IallIl~~~~~l~~ 39 (152)
+.++++.++|.+.+|+++-
T Consensus 10 ~~~~~I~~lIgfity~mfV 28 (53)
T PF13131_consen 10 LFTIFIFFLIGFITYKMFV 28 (53)
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 4567777788888887653
No 100
>PRK07079 hypothetical protein; Provisional
Probab=22.04 E-value=3e+02 Score=23.33 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=30.5
Q ss_pred CCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEe
Q psy11812 82 SNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQP 122 (152)
Q Consensus 82 ~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqv 122 (152)
++...+.+.+.+.++.+.+++.+++++.+.+.+...+++++
T Consensus 322 P~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~ 362 (469)
T PRK07079 322 PGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTV 362 (469)
T ss_pred cCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 44556788888888899999999999999765544455443
No 101
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=21.90 E-value=2.8e+02 Score=22.34 Aligned_cols=60 Identities=17% Similarity=0.030 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecC
Q psy11812 32 LFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLN 95 (152)
Q Consensus 32 ~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~ 95 (152)
-.+..|.|+++..=++...++....++++.+++.+.. -.+=.-.+||...++++||+.-+
T Consensus 190 d~aa~LaK~Allr~ig~~n~d~~~a~lE~elle~iN~----lGIGp~GlGG~tTal~V~Ie~~p 249 (273)
T TIGR00722 190 ETAAKLAKKALLRPIGERHPNPKIAKLELELLEEINS----LGIGPMGLGGKTTALDVKIESAH 249 (273)
T ss_pred HHHHHHHHHHhhhhhccCCCChhHHHHHHHHHHHHHh----cCcCCCccCCCeEEEEEEEeecC
Confidence 4466677777654456544445567777776533221 11222335677778888887654
No 102
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=21.08 E-value=2.2e+02 Score=17.65 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEE
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQ 121 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIq 121 (152)
+.+|-+.+ .+..+ ++.+.+....+ +..+.-+.+.++. ....++.+.++..-+++|+ ++.||
T Consensus 15 Va~vs~~l-a~~g~--nI~d~~q~~~~-~~F~m~~~~~~~~-~~~~~l~~~l~~~~~~~~l-~i~v~ 75 (77)
T cd04893 15 LNELTRAV-SESGC--NILDSRMAILG-TEFALTMLVEGSW-DAIAKLEAALPGLARRLDL-TLMMK 75 (77)
T ss_pred HHHHHHHH-HHcCC--CEEEceeeEEc-CEEEEEEEEEecc-ccHHHHHHHHHHHHHHcCC-EEEEE
Confidence 57777776 44433 77788877764 6778888888763 3556677777664456676 34443
No 103
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.02 E-value=1.8e+02 Score=21.21 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHhHH---HHHHHHHHHHhcc
Q psy11812 16 KYVDPILSIISALLLLLFSY---PFMRDAGYILLQT 48 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~---~l~~~s~~~Lld~ 48 (152)
+..|+..-.+|+++|++..+ +.++.-+...|+.
T Consensus 6 ~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~ 41 (167)
T PRK14475 6 NLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDA 41 (167)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 67777666666666666543 5556666666654
No 104
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=20.61 E-value=2.6e+02 Score=18.21 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh
Q psy11812 56 DSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ 112 (152)
Q Consensus 56 ~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~ 112 (152)
.-+.+.|. +++||.+|. ++++.+ .|.-.++.+++.+..+|...+++
T Consensus 37 spLA~~Lf-~i~gV~~Vf------~~~dfI----tVtK~~~~~W~~l~~~I~~~I~~ 82 (87)
T PF08712_consen 37 SPLAQALF-AIPGVKSVF------IGDDFI----TVTKNPDADWEDLKPEIREVIME 82 (87)
T ss_dssp -HHHHHHH-TSTTEEEEE------EETTEE----EEEE-TTS-HHHHHHHHHHHTH-
T ss_pred CHHHHHhc-CCCCEeEEE------EECCEE----EEeeCCCCCHHHHHHHHHHHHhh
Confidence 34556674 899998875 344443 33445668999999999998864
No 105
>PRK09274 peptide synthase; Provisional
Probab=20.27 E-value=5.2e+02 Score=21.89 Aligned_cols=58 Identities=5% Similarity=-0.072 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCC--CHHHHHHHHHHHHhhC
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ--DYLCCTHQLIDFFYQQ 113 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~--~~~~i~~~i~~~l~~~ 113 (152)
+..++|++.+ .++|+|..+.-+-+..-+++. ..+-|+..++. ...++.+.+++.+..+
T Consensus 453 v~p~eIE~~l-~~~p~V~~~~v~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 512 (552)
T PRK09274 453 LYTIPCERIF-NTHPGVKRSALVGVGVPGAQR--PVLCVELEPGVACSKSALYQELRALAAAH 512 (552)
T ss_pred ECcHHHHHHH-HhCcccceeEEEEeCCCCCce--EEEEEEccCccccchHHHhhhhHHHHHhc
Confidence 4568899988 689998766555443322222 22334444432 3445777777777644
Done!