Query psy11812
Match_columns 152
No_of_seqs 190 out of 1190
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 19:39:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 99.9 4.6E-26 1.6E-30 180.6 12.5 119 4-127 160-282 (283)
2 3j1z_P YIIP, cation efflux fam 99.9 3.1E-26 1.1E-30 183.7 10.3 118 4-126 169-290 (306)
3 3byp_A CZRB protein; membrane 99.7 4.5E-17 1.5E-21 109.0 7.5 81 44-126 1-87 (94)
4 2zzt_A Putative uncharacterize 99.6 4.3E-16 1.5E-20 107.0 7.1 80 46-127 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 83.8 1.4 4.7E-05 33.9 4.6 35 16-50 69-103 (283)
6 3j1z_P YIIP, cation efflux fam 82.0 1.5 5.2E-05 34.2 4.4 35 16-50 78-112 (306)
7 3cq1_A Putative uncharacterize 64.3 21 0.0007 23.0 5.8 52 72-126 33-85 (103)
8 3lno_A Putative uncharacterize 59.9 25 0.00085 22.8 5.7 53 72-126 35-89 (108)
9 3lax_A Phenylacetate-coenzyme 59.2 31 0.0011 21.8 8.0 69 53-124 14-88 (109)
10 1uwd_A Hypothetical protein TM 55.1 24 0.00082 22.6 4.9 52 72-125 33-85 (103)
11 2nyi_A Unknown protein; protei 48.3 71 0.0024 22.7 7.4 63 55-122 107-174 (195)
12 2cg4_A Regulatory protein ASNC 47.9 60 0.0021 21.8 7.5 58 54-121 81-139 (152)
13 3gxs_A Phenylacetate-coenzyme 44.8 57 0.002 20.6 8.9 68 53-124 14-88 (109)
14 1zpv_A ACT domain protein; str 41.1 58 0.002 19.6 9.5 65 55-126 19-83 (91)
15 1gh8_A Translation elongation 38.4 75 0.0026 20.1 8.1 67 51-120 15-82 (89)
16 2yy3_A Elongation factor 1-bet 37.6 79 0.0027 20.1 9.3 66 51-120 17-85 (91)
17 2jvf_A De novo protein M7; tet 36.0 77 0.0026 19.5 4.9 39 87-125 19-57 (96)
18 3arc_H Photosystem II reaction 34.9 28 0.00096 20.9 2.4 34 17-50 25-58 (65)
19 1r9i_A MU-conotoxin PIIIA; cys 34.7 25 0.00084 17.1 1.7 18 131-148 3-20 (26)
20 3udc_A Small-conductance mecha 31.8 98 0.0033 23.4 5.8 52 75-126 222-280 (285)
21 2jsx_A Protein NAPD; TAT, proo 31.6 1E+02 0.0035 19.6 8.0 68 45-125 11-79 (95)
22 3qov_A Phenylacetate-coenzyme 29.6 2E+02 0.0068 22.4 8.5 63 53-117 341-409 (436)
23 3bpd_A Uncharacterized protein 29.1 1.2E+02 0.0041 19.7 6.4 55 50-108 16-71 (100)
24 2zbc_A 83AA long hypothetical 28.4 93 0.0032 18.2 7.5 58 55-122 15-73 (83)
25 2l16_A SEC-independent protein 28.2 62 0.0021 20.0 3.3 44 17-60 7-62 (78)
26 1gib_A MU-conotoxin GIIIB; neu 27.3 27 0.00092 16.8 1.1 16 132-147 3-18 (26)
27 3r44_A Fatty acyl COA syntheta 26.4 2.5E+02 0.0086 22.5 7.8 68 53-122 423-491 (517)
28 2cvi_A 75AA long hypothetical 26.3 1.1E+02 0.0037 18.2 7.9 59 54-122 14-73 (83)
29 3ipl_A 2-succinylbenzoate--COA 26.0 2.5E+02 0.0084 22.3 8.7 69 53-123 408-476 (501)
30 2pn6_A ST1022, 150AA long hypo 22.4 1.7E+02 0.0059 19.2 7.6 59 54-122 77-136 (150)
31 2cyy_A Putative HTH-type trans 22.3 1.8E+02 0.006 19.3 8.7 59 54-123 79-138 (151)
32 2vv5_A MSCS, small-conductance 22.1 2.6E+02 0.0087 21.1 8.1 61 64-124 210-279 (286)
33 2p5v_A Transcriptional regulat 22.0 1.9E+02 0.0064 19.4 7.4 56 55-120 85-141 (162)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.93 E-value=4.6e-26 Score=180.57 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=108.0
Q ss_pred eehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCC
Q psy11812 4 SIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSN 83 (152)
Q Consensus 4 ~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~ 83 (152)
|+++.++|| +|+||++|+++|++|++++++++|++.+.|||++|++.+.+++++.+ +++|||.++|++|+|++| +
T Consensus 160 ~~~~~~~g~---~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i-~~~~~V~~v~~l~~~~~G-~ 234 (283)
T 3h90_A 160 ALGLSWYGW---HRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSG-P 234 (283)
T ss_dssp SSCSCSTTS---CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHSSSCSEEEEEEEEEET-T
T ss_pred HHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-hcCCCcccceeeEEEEEC-C
Confidence 334456788 89999999999999999999999999999999999988899999999 699999999999999986 5
Q ss_pred eEEEEEEEEecCCC---CHHHHHHHHHHHHh-hCCCceEEEEeeecCc
Q psy11812 84 KTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQGISHVTIQPEFYEV 127 (152)
Q Consensus 84 ~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~~i~~vtIqvep~~~ 127 (152)
+.++++|++++++. ++|++.+++++.++ +++..++|||+||++.
T Consensus 235 ~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep~~~ 282 (283)
T 3h90_A 235 TRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSV 282 (283)
T ss_dssp EEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSCC
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 78899999999984 78999999999997 7888999999999863
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.93 E-value=3.1e-26 Score=183.70 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=108.1
Q ss_pred eehHhhhCCCCccchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCC
Q psy11812 4 SIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSN 83 (152)
Q Consensus 4 ~li~~~~g~~~~~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~ 83 (152)
|+++.++|| +|+||++|++||++|++++|+++|++.+.|||++|++.+.++|++.+ ++.|||.+||++|+|++| +
T Consensus 169 ~~~~~~~g~---~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i-~~~~~V~~vh~l~~~~~G-~ 243 (306)
T 3j1z_P 169 ALVLSQYGW---WWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIA-KEDPRVLGLHDLRTRQAG-K 243 (306)
T ss_dssp TTSSCCSSS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHSTTBCCCCCBCCEEET-T
T ss_pred HHHHHHhCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHH-hcCCCcceeeeEEEEEEC-C
Confidence 444455677 89999999999999999999999999999999999998899999998 699999999999999986 6
Q ss_pred eEEEEEEEEecCCC---CHHHHHHHHHHHHh-hCCCceEEEEeeecC
Q psy11812 84 KTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQGISHVTIQPEFYE 126 (152)
Q Consensus 84 ~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~~i~~vtIqvep~~ 126 (152)
++++++|++++++. ++|++.+++|+.++ ++++.++|||+||.+
T Consensus 244 ~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~ 290 (306)
T 3j1z_P 244 TVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQ 290 (306)
T ss_dssp EEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETT
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 88899999999984 78999999999997 789999999999987
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.69 E-value=4.5e-17 Score=108.96 Aligned_cols=81 Identities=12% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHhccCCCCCCHHHHHHHHHHhC--CCeeeeeeeEEEeecCCeEEEEEEEEecCCC---CHHHHHHHHHHHHh-hCCCce
Q psy11812 44 ILLQTIPNHIDIDSLCTELVEAF--PNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQGISH 117 (152)
Q Consensus 44 ~Lld~~p~~~~~~~I~~~i~~~~--~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~~i~~ 117 (152)
.|||++|++.+.++|++.+ +++ |||.+||++|+|++| +.+++++|+.++++. ++|++.+++++.|+ +|++.+
T Consensus 1 ~Lld~~~~~~~~~~I~~~l-~~~~~~gV~~vh~l~~~~~g-~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~ 78 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFL-QERIRGRALEVHDLKTRRAG-PRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQ 78 (94)
T ss_dssp -----CCCHHHHHHHHHHH-HHHHTTTCSEEEEEEEEEET-TEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred CCcCCCCCHHHHHHHHHHH-HhcCCCCceeeeeEEEEEEC-CcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCE
Confidence 4899999988899999999 689 999999999999986 578999999999874 67999999999997 798789
Q ss_pred EEEEeeecC
Q psy11812 118 VTIQPEFYE 126 (152)
Q Consensus 118 vtIqvep~~ 126 (152)
+|||+||..
T Consensus 79 vtIh~ep~~ 87 (94)
T 3byp_A 79 ATIHVEPEG 87 (94)
T ss_dssp EEEEEEECC
T ss_pred EEEEeCCCC
Confidence 999999853
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.64 E-value=4.3e-16 Score=107.02 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=68.2
Q ss_pred hccCCCCC--CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCC---CHHHHHHHHHHHHh-hCC-CceE
Q psy11812 46 LQTIPNHI--DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ---DYLCCTHQLIDFFY-QQG-ISHV 118 (152)
Q Consensus 46 ld~~p~~~--~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~---~~~~i~~~i~~~l~-~~~-i~~v 118 (152)
||++|++. +.++|++.+ +++|||.+||+||+|.+| +.+++++||.++++. +++++.++|++.|+ +|+ +.++
T Consensus 1 md~~~~~~~~~~~~I~~~l-~~~~gV~~vh~lr~r~~G-~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~v 78 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVL-ERFPNVHNPHRVRIRRVG-TKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDV 78 (107)
T ss_dssp ---CCHHHHHHHHHHHHHH-TTCSSCEEEEEEEEECSC-C-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCccHHHHHHHHHHH-HcCCCccccEEEEEEEEC-CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 67888888 889999999 699999999999999965 678999999999874 67899999999997 787 8999
Q ss_pred EEEeeecCc
Q psy11812 119 TIQPEFYEV 127 (152)
Q Consensus 119 tIqvep~~~ 127 (152)
|||+||...
T Consensus 79 tIhvEp~~~ 87 (107)
T 2zzt_A 79 TIHVEPLGN 87 (107)
T ss_dssp EEEEEETTC
T ss_pred EEEEecCCC
Confidence 999999764
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=83.75 E-value=1.4 Score=33.90 Aligned_cols=35 Identities=6% Similarity=0.090 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
..+.++++++.+++++..++.++.+++..|++..+
T Consensus 69 ~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~ 103 (283)
T 3h90_A 69 GKAESLAALAQSMFISGSALFLFLTGIQHLISPTP 103 (283)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 78999999999999999999999999999997544
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=82.01 E-value=1.5 Score=34.18 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 16 KYVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 16 ~~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
.-+.++++++.+++++..|+.++.+++..|+...+
T Consensus 78 ~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~ 112 (306)
T 3j1z_P 78 GKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSP 112 (306)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCC
Confidence 78999999999999999999999999999997654
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=64.31 E-value=21 Score=22.96 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=31.5
Q ss_pred eeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEeeecC
Q psy11812 72 VHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQPEFYE 126 (152)
Q Consensus 72 Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqvep~~ 126 (152)
|.++.+- ++.+.+.+.+..+.-.....+.+.+++.|++ .|+..+.|++....
T Consensus 33 V~~v~v~---~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~~p 85 (103)
T 3cq1_A 33 IYDLVVE---PPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEP 85 (103)
T ss_dssp EEEEEEE---TTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECCSS
T ss_pred eEEEEEE---CCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEecCC
Confidence 4455443 3443333333222223567899999999986 49988888775443
No 8
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=59.92 E-value=25 Score=22.84 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=34.2
Q ss_pred eeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHH-hh-CCCceEEEEeeecC
Q psy11812 72 VHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFF-YQ-QGISHVTIQPEFYE 126 (152)
Q Consensus 72 Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l-~~-~~i~~vtIqvep~~ 126 (152)
|.++.+- +++.+.+++.+..+.-.....+.+.+++.| +. .|+..+.|++...+
T Consensus 35 V~~I~v~--~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p 89 (108)
T 3lno_A 35 VYDVTAD--ENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNP 89 (108)
T ss_dssp EEEEEEC--TTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCSS
T ss_pred ceEEEEC--CCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEecC
Confidence 3444443 224555555544333346778999999999 65 49998888887554
No 9
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=59.21 E-value=31 Score=21.81 Aligned_cols=69 Identities=10% Similarity=-0.066 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCC-----CHHHHHHHHHHHHh-hCCCceEEEEeee
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ-----DYLCCTHQLIDFFY-QQGISHVTIQPEF 124 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~-----~~~~i~~~i~~~l~-~~~i~~vtIqvep 124 (152)
....+|++.+ .++|||....-+-+-.-. ..-...+.++..+.. ....+.+++++.++ .+|+. ..|++-+
T Consensus 14 v~P~eIE~vl-~~~p~v~~~~vv~v~~~~-~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~-~~v~~v~ 88 (109)
T 3lax_A 14 IFPIQIETIL-LQFKELGSDYLITLETAE-SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT-PRVKLVP 88 (109)
T ss_dssp ECHHHHHHHH-HTCTTEEEEEEEEEEEET-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred ECHHHHHHHH-HhCCCcccceEEEEeccc-cceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCc-cceEEEc
Confidence 4568899988 699999877666665543 333455566665542 23567778888886 56774 3444433
No 10
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=55.07 E-value=24 Score=22.57 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=32.3
Q ss_pred eeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEeeec
Q psy11812 72 VHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQPEFY 125 (152)
Q Consensus 72 Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqvep~ 125 (152)
|.++.+- +++.+.+.+.+..+.-.....+.+.+++.+++ .|+..+.|.+...
T Consensus 33 V~~v~v~--~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~~ 85 (103)
T 1uwd_A 33 VYDIQID--DQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTFD 85 (103)
T ss_dssp CCCEEEC--TTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECCS
T ss_pred eeEEEEc--CCCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEecC
Confidence 4455442 22454444444333334678899999999986 4998888776544
No 11
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=48.34 E-value=71 Score=22.69 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeec-----CCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEe
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLT-----SNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQP 122 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~-----~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqv 122 (152)
+.+|-+.+ .+. | .++.+++....+ .+.+++.+.+.+++..+ ..+.+.+....+++++ ++.+|.
T Consensus 107 va~Vt~~L-a~~-g-~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~-di~~~~ 174 (195)
T 2nyi_A 107 VEAVTAVL-AKK-G-ANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGV-DIDLEE 174 (195)
T ss_dssp HHHHHHHH-HHT-T-CEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTC-EEEEEE
T ss_pred HHHHHHHH-HHc-C-CCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCe-EEEEEE
Confidence 56777776 343 3 378888887654 24666777776664344 6666666665556775 355553
No 12
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=47.90 E-value=60 Score=21.75 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEE
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQ 121 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIq 121 (152)
..+++.+.+ .+.|+|..++.+ .|+-++.+. +.++ +.+++.+-+.+.+.+ .|+.++...
T Consensus 81 ~~~~~~~~l-~~~peV~~~~~v----tG~~d~~~~--v~~~---d~~~l~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 81 DYPSALAKL-ESLDEVTEAYYT----TGHYSIFIK--VMCR---SIDALQHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp GHHHHHHHH-HTCTTEEEEEEE----SSSCSEEEE--EEES---CHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred CHHHHHHHH-hCCcCeEEEEEE----ecccCEEEE--EEEC---CHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 357888888 699998877754 233344444 4443 334444445455553 377655443
No 13
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=44.78 E-value=57 Score=20.63 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCC------CHHHHHHHHHHHHh-hCCCceEEEEeee
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ------DYLCCTHQLIDFFY-QQGISHVTIQPEF 124 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~------~~~~i~~~i~~~l~-~~~i~~vtIqvep 124 (152)
+...+|++.+ .++|+|....-+-+-.-+ +.-.+.+.+++ ++. +..++.+.+++.++ .+++.- .|.+-+
T Consensus 14 v~P~eIE~~l-~~~p~v~~~~~v~v~~~~-~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~-~v~~v~ 88 (109)
T 3gxs_A 14 IFPIQIETIL-LQFKELGSDYLITLETAE-SNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVTP-RVKLVP 88 (109)
T ss_dssp ECHHHHHHHH-HTCTTEEEEEEEEEEEET-TEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSCC-EEEEEC
T ss_pred ECHHHHHHHH-HhCCCcCCcEEEEEEcCC-CceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCce-EEEEEC
Confidence 4568899998 689999866655554433 22345566666 332 34568888888887 567753 454444
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=41.09 E-value=58 Score=19.60 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeeecC
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFYE 126 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep~~ 126 (152)
+.+|.+.+ .+. | .++.++...... +...+.+.+.+++..+.+++.+++++.-.+++ +.+++.+.+
T Consensus 19 la~vt~~l-a~~-~-~NI~~i~~~~~~-~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~---~~~~~~~~~ 83 (91)
T 1zpv_A 19 VAGVSGKI-AEL-G-LNIDDISQTVLD-EYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN---VKINIQSAA 83 (91)
T ss_dssp HHHHHHHH-HHT-T-CEEEEEEEEEET-TEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT---EEEEEEEGG
T ss_pred HHHHHHHH-HHc-C-CCEEEEEeEEEc-CEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC---CEEEEeeHH
Confidence 57787777 454 4 378888777754 67778888888776678888888877555555 345555544
No 15
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=38.38 E-value=75 Score=20.14 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEEE
Q psy11812 51 NHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVTI 120 (152)
Q Consensus 51 ~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vtI 120 (152)
++.+.+++++.+.+..+.-........-.++-+-..+.+.+.++++.-. .+.+++.++++ ++.++-|
T Consensus 15 ~etDl~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~---td~lee~i~~~e~Vqsvdv 82 (89)
T 1gh8_A 15 PDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGG---TEAAEESLSGIEGVSNIEV 82 (89)
T ss_dssp SCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGG---GGHHHHHHTTSCSSEEEEE
T ss_pred CCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcC---hHHHHHHHhccCCccEEEE
Confidence 4567888888885556655666777777777778889999998775321 23445556555 6666544
No 16
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=37.57 E-value=79 Score=20.15 Aligned_cols=66 Identities=8% Similarity=0.143 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCC--CHHHHHHHHHHHHhhC-CCceEEE
Q psy11812 51 NHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQ--DYLCCTHQLIDFFYQQ-GISHVTI 120 (152)
Q Consensus 51 ~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~--~~~~i~~~i~~~l~~~-~i~~vtI 120 (152)
++.+.+++++.+.+..+.-........-.++-+-..+.+.+.++++. ..+.+ ++.++++ ++.++-|
T Consensus 17 ~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~l----ee~i~~~e~VqSvdV 85 (91)
T 2yy3_A 17 PDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEV----AEKFEEVENVESAEV 85 (91)
T ss_dssp TTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHH----HHHHHHSTTEEEEEE
T ss_pred CCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHH----HHHHhcCCCceEEEE
Confidence 45788888888865566666777888888888888999999988753 34444 4445434 5665544
No 17
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.00 E-value=77 Score=19.54 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=26.8
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEeeec
Q psy11812 87 STAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFY 125 (152)
Q Consensus 87 ~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqvep~ 125 (152)
.++.+.+..+.+.++..+++++.|.+.|-..+.|.+..+
T Consensus 19 ieidirvstgkeleralqelekalaragarnvqitisae 57 (96)
T 2jvf_A 19 IEIDIRVSTGKELERALQELEKALARAGARNVQITISAE 57 (96)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECS
T ss_pred EEEEEEEcccHHHHHHHHHHHHHHHhccccceEEEEEec
Confidence 566666777778888888888888655666555555443
No 18
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=34.89 E-value=28 Score=20.91 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q psy11812 17 YVDPILSIISALLLLLFSYPFMRDAGYILLQTIP 50 (152)
Q Consensus 17 ~~Dpi~si~IallIl~~~~~l~~~s~~~Lld~~p 50 (152)
=--|+.+++.++|.++..+-+---+..+|+|..+
T Consensus 25 GTtplMgv~m~Lf~vFl~iiLeIYNsSvlLdgi~ 58 (65)
T 3arc_H 25 GTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVN 58 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTSSCCTTCC
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhCcceeecCcc
Confidence 4578999999999999888888888888888765
No 19
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=34.67 E-value=25 Score=17.09 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=11.8
Q ss_pred cCcCccchhhhccccccc
Q psy11812 131 VCPHIVNAVDRRLLKPYT 148 (152)
Q Consensus 131 ~c~~~~~~~~~~~~~~~~ 148 (152)
.|...-..|+.|-|+|+.
T Consensus 3 ~CC~~Pk~CksR~CkP~~ 20 (26)
T 1r9i_A 3 LCCGFPKSCRSRQCKPHR 20 (26)
T ss_dssp TTTTSTTGGGSTTTTTSS
T ss_pred cccCCCCccccccccccc
Confidence 455555667777777763
No 20
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=31.83 E-value=98 Score=23.44 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=33.3
Q ss_pred eEEEeecCCeEEEEEEEEecCCCC---HHHHHHHHHHHHhhCCC----ceEEEEeeecC
Q psy11812 75 IHVWQLTSNKTVSTAHIIFLNPQD---YLCCTHQLIDFFYQQGI----SHVTIQPEFYE 126 (152)
Q Consensus 75 l~~w~~~~~~~~~~~hv~v~~~~~---~~~i~~~i~~~l~~~~i----~~vtIqvep~~ 126 (152)
+.+..++++.+...+..-+++... .+++..++++.+++.|+ -+-+||++..+
T Consensus 222 v~~~~~~~s~i~~~v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~~ 280 (285)
T 3udc_A 222 LGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRVK 280 (285)
T ss_dssp EEEEEEETTEEEEEEEEEESTTCHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC-
T ss_pred ccccccCCCEEEEEEEEEECcchHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcCC
Confidence 566677777777777776665532 34577788888865454 35577776543
No 21
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=31.55 E-value=1e+02 Score=19.60 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=39.9
Q ss_pred HhccCCCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEEEEee
Q psy11812 45 LLQTIPNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVTIQPE 123 (152)
Q Consensus 45 Lld~~p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vtIqve 123 (152)
|+...|. ..+++.+.| .++||| . ++.-.-..+++++.+-- .+...+.+.+ +.+++. |+..+.+...
T Consensus 11 vV~~~p~--~~~~V~~~L-~~ipgv-E---i~~~~~~~GkiVV~iEa-----~~~~~l~~~i-~~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 11 VVQAKSE--RISDISTQL-NAFPGC-E---VAVSDAPSGQLIVVVEA-----EDSETLIQTI-ESVRNVEGVLAVSLVYH 77 (95)
T ss_dssp EEEECTT--SHHHHHHHH-TTSTTE-E---EEEEETTTTEEEEEEEE-----SSHHHHHHHH-HHHTTSTTEEEEEESSC
T ss_pred EEEECCC--CHHHHHHHH-HCCCCe-E---EEEecCCCCCEEEEEEe-----CCHHHHHHHH-HHHhcCCCccEEeEEEE
Confidence 4455553 368999999 699997 3 44443112454443321 3455666666 556654 8877776554
Q ss_pred ec
Q psy11812 124 FY 125 (152)
Q Consensus 124 p~ 125 (152)
-.
T Consensus 78 ~~ 79 (95)
T 2jsx_A 78 QQ 79 (95)
T ss_dssp CC
T ss_pred Ee
Confidence 33
No 22
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=29.59 E-value=2e+02 Score=22.40 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCC-CC----HHHHHHHHHHHHhhC-CCce
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNP-QD----YLCCTHQLIDFFYQQ-GISH 117 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~-~~----~~~i~~~i~~~l~~~-~i~~ 117 (152)
+...+|++.+ .+.|+|.+..-+-...-. ..-.+.+.|+.++. .+ ..++.+.+++.|.++ ++..
T Consensus 341 v~p~eiE~~l-~~~p~v~~~~vv~~~~~~-~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~ 409 (436)
T 3qov_A 341 IFPMQVEKIL-VQFPELGSNYLITLETVN-NQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLKDEILVTP 409 (436)
T ss_dssp ECHHHHHHHH-TTCTTEEEEEEEEEEEET-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ECHHHHHHHH-HhCcCcCCcEEEEEEcCC-CCcEEEEEEEEcCccccchhhHHHHHHHHHHHHHHhcCCce
Confidence 5678999998 699999876665555432 23345555655522 22 467888888888754 6644
No 23
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=29.10 E-value=1.2e+02 Score=19.72 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCC-CCHHHHHHHHHH
Q psy11812 50 PNHIDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNP-QDYLCCTHQLID 108 (152)
Q Consensus 50 p~~~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~-~~~~~i~~~i~~ 108 (152)
|.+.++-++...+ .+++||.+| ++.+..+..+. ..+.|.+.++ .+.+++.+.|++
T Consensus 16 Ph~P~ivdlA~~l-~~~~gV~gV-nItV~EvD~eT--e~lkItIEG~dIdfd~I~~~IE~ 71 (100)
T 3bpd_A 16 PHEPKTIVFALKL-SELENVDGV-NIHLSEIDQAT--ENIKITILGNNLDYEQIKGVIED 71 (100)
T ss_dssp ESCSCHHHHHHHH-HTSTTEEEE-EEEEEEECSSE--EEEEEEEEEEEECHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH-HhCCCcceE-EEEEEEeeccc--cEEEEEEEecCCCHHHHHHHHHH
Confidence 4555667788888 699999887 57788875443 5555555665 577776655544
No 24
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=28.42 E-value=93 Score=18.21 Aligned_cols=58 Identities=7% Similarity=0.026 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEe
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQP 122 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqv 122 (152)
.+++.+.+ .+.|+|..++.+ .|+.+ .-+++.+++ .+++.+-+.+.+.. .|+.++.-++
T Consensus 15 ~~~~~~~l-~~~peV~~~~~v----tG~~d--~l~~v~~~d---~~~l~~~~~~~l~~~~gV~~~~t~i 73 (83)
T 2zbc_A 15 EDEVFERL-KSMSEVTEVHVV----YGVYD--IVVKVEADS---MDKLKDFVTNTIRKLPKVRSTLTMI 73 (83)
T ss_dssp HHHHHHHH-TTCTTEEEEEEC----SSSCS--EEEEEECSS---HHHHHHHHHHTGGGSTTEEEEEEEE
T ss_pred HHHHHHHH-hCCCCeEEEEEE----eccCC--EEEEEEECC---HHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 57888888 699998776542 13333 445555543 33344444445654 3776655444
No 25
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=28.24 E-value=62 Score=20.04 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHHH------------HhHHHHHHHHHHHHhccCCCCCCHHHHHH
Q psy11812 17 YVDPILSIISALLLL------------LFSYPFMRDAGYILLQTIPNHIDIDSLCT 60 (152)
Q Consensus 17 ~~Dpi~si~IallIl------------~~~~~l~~~s~~~Lld~~p~~~~~~~I~~ 60 (152)
+.+-+.-++|+++++ ..+++-||++.+..-+...++...+++++
T Consensus 7 ~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~~~~~~~~el~~ 62 (78)
T 2l16_A 7 IPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELTA 62 (78)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhhhHHhhHHHHHH
Confidence 345555566666654 35677888888877655444444445544
No 26
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=27.29 E-value=27 Score=16.80 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=9.6
Q ss_pred CcCccchhhhcccccc
Q psy11812 132 CPHIVNAVDRRLLKPY 147 (152)
Q Consensus 132 c~~~~~~~~~~~~~~~ 147 (152)
|..--..|+.|-|||.
T Consensus 3 cc~~p~~ck~r~ckp~ 18 (26)
T 1gib_A 3 CCTPPRKCKDRRCKPM 18 (26)
T ss_dssp SSSSSCCCCSGGGTSS
T ss_pred ccCCCccccccccCcc
Confidence 4444556677777664
No 27
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=26.39 E-value=2.5e+02 Score=22.52 Aligned_cols=68 Identities=7% Similarity=-0.053 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecC-CCCHHHHHHHHHHHHhhCCCceEEEEe
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLN-PQDYLCCTHQLIDFFYQQGISHVTIQP 122 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~-~~~~~~i~~~i~~~l~~~~i~~vtIqv 122 (152)
+...+|++.+ .++|+|..+.=+-+-.-..+.. +-+-+..++ ..+.+++.+.+++.|-.|.+-...+.+
T Consensus 423 v~p~eIE~~l-~~~p~V~~~~Vv~~~~~~~g~~-~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v 491 (517)
T 3r44_A 423 VYPAEIESVI-IGVPGVSEVAVIGLPDEKWGEI-AAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFA 491 (517)
T ss_dssp ECHHHHHHHH-TTSTTEEEEEEEEEEETTTEEE-EEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred ECHHHHHHHH-HhCCCEeEEEEEeccccccCce-EEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEE
Confidence 5678999998 6999988765544433211222 222222222 246777888888877555443333333
No 28
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=26.31 E-value=1.1e+02 Score=18.21 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhC-CCceEEEEe
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-GISHVTIQP 122 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~-~i~~vtIqv 122 (152)
..+++.+.+ ++.|+|..++.+ .|+.+ .-+++.+++ ..++.+-+.+.+.+. |+..+.-.+
T Consensus 14 ~~~~~~~~l-~~~peV~e~~~v----tG~~D--~ll~v~~~d---~~~l~~~i~~~l~~~~gV~~~~T~i 73 (83)
T 2cvi_A 14 KEREVMEKL-LAMPEVKEAYVV----YGEYD--LIVKVETDT---LKDLDQFITEKIRKMPEIQMTSTMI 73 (83)
T ss_dssp CHHHHHHHH-HTSTTEEEEEEC----BSSCS--EEEEEEESS---HHHHHHHHHTTGGGCTTEEEEEEEE
T ss_pred CHHHHHHHH-hCCCCeeEEEEE----cccCC--EEEEEEECC---HHHHHHHHHHHhccCCCEeEEEEEE
Confidence 357888888 699998777542 13333 445555544 334444444456544 776654444
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=26.04 E-value=2.5e+02 Score=22.30 Aligned_cols=69 Identities=10% Similarity=-0.060 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhhCCCceEEEEee
Q psy11812 53 IDIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPE 123 (152)
Q Consensus 53 ~~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~~~i~~vtIqve 123 (152)
+...+|++.+ .+.|+|.++.=+-.-.- ...-...+-+......+..++.+.+++.|-.|.+-...+.++
T Consensus 408 v~p~eiE~~l-~~~p~V~~~~vv~~~~~-~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~ 476 (501)
T 3ipl_A 408 IYPYQIETVA-KQFPGISDAVCVGHPDD-TWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKHFEKVD 476 (501)
T ss_dssp ECHHHHHHHH-TTSTTEEEEEEEEEEET-TTEEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECS
T ss_pred ECHHHHHHHH-HhCCCccEEEEEEEecc-cCCceEEEEEEeCCCCCHHHHHHHHHhhCccccCCCEEEEec
Confidence 5678999998 69999887654443331 112223333444455677888888888875554433333343
No 30
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.43 E-value=1.7e+02 Score=19.21 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEe
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQP 122 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqv 122 (152)
..+++.+.+ .+.|+|..++.. .|..++.+ ++.++ +.+++.+-+.+.+.+ .|+.++...+
T Consensus 77 ~~~~~~~~l-~~~p~V~~~~~~----tG~~d~~~--~v~~~---d~~~l~~~l~~~l~~~~gV~~~~t~i 136 (150)
T 2pn6_A 77 YHVELGNKL-AQIPGVWGVYFV----LGDNDFIV--MARYK---TREEFMEKFLERVMSIPEVERTSTQV 136 (150)
T ss_dssp HHHHHHHHH-HTSTTEEEEEEC----SSSCSEEE--EEEES---SHHHHHHHTHHHHTTCTTEEEEEEEE
T ss_pred HHHHHHHHH-hcCchhhhhhhh----cCcCCEEE--EEEEC---CHHHHHHHHHHHhccCCCeeEEEEEE
Confidence 457888888 689998777641 13334444 44433 344454555455653 4776655444
No 31
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.30 E-value=1.8e+02 Score=19.29 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEEEee
Q psy11812 54 DIDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTIQPE 123 (152)
Q Consensus 54 ~~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtIqve 123 (152)
..+++.+.+ .+.|+|..++.+ .|+-++.+ ++.+++ .+++.+-+ +.+.+ .|+.++...+-
T Consensus 79 ~~~~~~~~l-~~~p~V~~~~~~----tG~~d~~~--~v~~~d---~~~l~~~~-~~l~~~~gV~~~~t~iv 138 (151)
T 2cyy_A 79 KYSEVASNL-AKYPEIVEVYET----TGDYDMVV--KIRTKN---SEELNNFL-DLIGSIPGVEGTHTMIV 138 (151)
T ss_dssp CHHHHHHHH-HTCTTEEEEEEC----SSSSSEEE--EEEESS---HHHHHHHH-HHHHTSTTEEEEEEEEC
T ss_pred cHHHHHHHH-hcCCCeeEeeEe----cCCCCEEE--EEEECC---HHHHHHHH-HHHhCCCCEeEEEEEEE
Confidence 468888888 699998877652 13334444 444443 33444444 44553 37766554443
No 32
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=22.11 E-value=2.6e+02 Score=21.07 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=38.4
Q ss_pred HhCCCeeee--eeeEEEeecCCeEEEEEEEEecCCCC---HHHHHHHHHHHHhhCCC----ceEEEEeee
Q psy11812 64 EAFPNILNV--HEIHVWQLTSNKTVSTAHIIFLNPQD---YLCCTHQLIDFFYQQGI----SHVTIQPEF 124 (152)
Q Consensus 64 ~~~~gV~~V--h~l~~w~~~~~~~~~~~hv~v~~~~~---~~~i~~~i~~~l~~~~i----~~vtIqvep 124 (152)
++.|++..= -.+++..++++.+...+..-+++... ..++..++++.+++.|+ .+.++|++.
T Consensus 210 ~~~~~vl~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~~ 279 (286)
T 2vv5_A 210 QSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKR 279 (286)
T ss_dssp HHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEEC
T ss_pred HhCcccccCCCCEEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEecc
Confidence 467877532 25677778777777777777776531 34566777777764344 355666654
No 33
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.98 E-value=1.9e+02 Score=19.43 Aligned_cols=56 Identities=11% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCeeeeeeeEEEeecCCeEEEEEEEEecCCCCHHHHHHHHHHHHhh-CCCceEEE
Q psy11812 55 IDSLCTELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ-QGISHVTI 120 (152)
Q Consensus 55 ~~~I~~~i~~~~~gV~~Vh~l~~w~~~~~~~~~~~hv~v~~~~~~~~i~~~i~~~l~~-~~i~~vtI 120 (152)
.+++.+.+ .+.|+|..++.+ .|+.++.+ ++.+++ .+++.+-+.+.+.+ .|+.++..
T Consensus 85 ~~~~~~~l-~~~peV~~~~~v----tG~~d~~~--~v~~~d---~~~l~~~l~~~l~~~~gV~~~~t 141 (162)
T 2p5v_A 85 REDFAASV-RKWPEVLSCFAL----TGETDYLL--QAFFTD---MNAFSHFVLDTLLSHHGVQDAQS 141 (162)
T ss_dssp HHHHHHHH-TTCTTEEEEEEE----SSSCSEEE--EEEESS---HHHHHHHHHHTTTTSTTEEEEEE
T ss_pred HHHHHHHH-hcChhhhEeeee----cCCCCEEE--EEEECC---HHHHHHHHHHHhhcCCCeeEEEE
Confidence 67888888 689998777652 13334444 444433 34444445445553 37755443
Done!