RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11812
(152 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 33.7 bits (78), Expect = 0.013
Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 17 YVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNVH--- 73
D + ++ + +L + +A LL + + ++V ++P + H
Sbjct: 170 RADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEII-DIVTSWPGVSGAHDLR 228
Query: 74 ----------EIHVWQLTSNKTVSTAHII 92
+IH+ ++ + + AH++
Sbjct: 229 TRQSGPTRFIQIHL-EMEDSLPLVQAHMV 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.037
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 20/165 (12%)
Query: 3 CSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTEL 62
C I++ V ++ + + + L S D LL + L E+
Sbjct: 266 CKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREV 322
Query: 63 VEAFPNILNV------HEIHVW----QLTSNK--TVSTAHIIFLNPQDYLCCTHQLIDFF 110
+ P L++ + W + +K T+ + + L P +Y +L F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 111 YQQGISHVTIQPEFYEVRLKVCPHIVNAVDRRLL-----KPYTAS 150
I + + +++V +VN + + L K T S
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.7
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 23/105 (21%)
Query: 10 TDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHI-DIDSLCTELVEAF-P 67
T+ A D + L F+ GY+ P+ + D + + F
Sbjct: 45 TEGFAAD--DEPTTPAE-----LVGK-FL---GYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 68 NILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQ 112
L ++IH + A + L T +LI +
Sbjct: 94 CYLEGNDIH----------ALAAKLLQENDTTLVKTKELIKNYIT 128
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 27.3 bits (61), Expect = 2.7
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 60 TELVEAFPNILNVH-EIHVWQLTSNKTVSTAHIIFL 94
E + H V + + T I FL
Sbjct: 915 VEDYSQNVAVRLGHMACMVENECEDPSQET--ITFL 948
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 26.3 bits (57), Expect = 5.0
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 30/125 (24%)
Query: 30 LLLF----SYPFMRDAGYILLQTIPNHID-----IDSLCTELVEAFPNILNVHEIHVWQL 80
L LF + ++R IL N D + + +++ + FP
Sbjct: 270 LNLFKSIWNNRWLRTISVILFL---NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP 326
Query: 81 TSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQGISHVTIQPEFYEVRLKVCPHIVNAVD 140
+ + D F + + + Y PH AVD
Sbjct: 327 EPG-----------EDPRVTRAKYFIRDEFLRISTASGDGRHYCY-------PHFTCAVD 368
Query: 141 RRLLK 145
++
Sbjct: 369 TENIR 373
>3rhz_A GTF3, nucleotide sugar synthetase-like protein;
glycosyltransferase, transferase; HET: UDP; 1.90A
{Streptococcus parasanguinis} PDB: 3qkw_A*
Length = 339
Score = 26.2 bits (57), Expect = 5.0
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 13 SVAKYVDPILSIISALLLLLFSYPFMRDAGYILLQTIPNHIDIDSLCTELVEAFPNILNV 72
++K +D I++ + +++F P + + N + + +L +
Sbjct: 60 ELSKRLDGIVAGLRHGDVVIFQTPTW--NTTEFDEKLMNKL--------KLYDIKIVLFI 109
Query: 73 HEIHVWQLTSNKTVSTAHIIFLNPQDYLCC-THQLIDFFYQQGI--SHVTIQPEF 124
H++ + N + I + N D + + ++ID G+ S +Q +
Sbjct: 110 HDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRDFGMNVSKTVVQGMW 164
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase,
protein-DNA cleavage complex; HET: DNA LFX; 2.90A
{Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C*
3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Length = 268
Score = 26.0 bits (58), Expect = 5.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 6 IVYLTDASVAKYVDPILSIISALLLLLFSYPFMR---DAGYI 44
I+ +TDA D + I LLL F Y +MR +AG++
Sbjct: 122 IIIMTDADT----DG--AHIQTLLLTFF-YRYMRPLVEAGHV 156
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1,
putative metal-dependent hydrolase; HET: KCX MSE; 1.40A
{Lactobacillus casei}
Length = 376
Score = 25.8 bits (56), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 29 LLLLFSYPFMRDAGYILLQTIPN-HIDIDSLCTELVEAFPNILN 71
++LL YP+ R+AGY L PN + DI L + N
Sbjct: 260 VVLLHCYPYHREAGY-LASVFPNLYFDISLLDNLGPSGASRVFN 302
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 25.8 bits (57), Expect = 6.9
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 100 LCCTHQLID---FFYQQGISHVTIQPEFYEVRLKVCPHIVNAVDRRLLKPYTASKT 152
L Q+I + + + H ++P+ + + L ++V +D L K Y ++T
Sbjct: 108 LLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART 163
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 25.6 bits (57), Expect = 7.9
Identities = 3/32 (9%), Positives = 13/32 (40%)
Query: 61 ELVEAFPNILNVHEIHVWQLTSNKTVSTAHII 92
E + + ++ H + + +T++ +
Sbjct: 124 EYINGLGSFVDSHTLLAKLKSGERTITAQTFV 155
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase,
tuberculosi quinolone binding site, DNA binding site,
ATP-binding; HET: DNA; 1.95A {Mycobacterium
tuberculosis} PDB: 3ig0_A* 2zjt_A*
Length = 242
Score = 25.2 bits (56), Expect = 9.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 6 IVYLTDASVAKYVDPILSIISALLLLLFSYPFMR---DAGYI 44
IV + DA V D IS LLL L + FMR + G++
Sbjct: 94 IVLMADADV----DG--QHISTLLLTLL-FRFMRPLIENGHV 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.434
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,317,314
Number of extensions: 126736
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 15
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.9 bits)