RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11812
         (152 letters)



>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 29.3 bits (66), Expect = 0.058
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 60  TELVEAFPNILNVHEIHVWQLTSNKTVSTAHIIFLNPQDYLCCTHQLIDFFYQQ-----G 114
            ++V ++P +   H++   Q    + +   H+        L   H + D   Q       
Sbjct: 11  IDIVTSWPGVSGAHDLRTRQSGPTRFIQ-IHLEM-EDSLPLVQAHMVADQVEQAILRRFP 68

Query: 115 ISHVTIQPEFYEV 127
            S V I  +   V
Sbjct: 69  GSDVIIHQDPCSV 81


>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 28.2 bits (62), Expect = 0.30
 Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 1   MICSIIVYLTDASVAKYVDPILSIISALLLLLFSYPFMRDAGYILL 46
           ++ ++ +           D + ++   + +L  +     +A   LL
Sbjct: 160 ILLALGLSWYGWH---RADALFALGIGIYILYSALRMGYEAVQSLL 202


>g1sse.1 g.78.1.1 (A:,B:) YAP1 redox domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 121

 Score = 24.9 bits (54), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)

Query: 46 LQTIPNH--IDIDSLCTEL 62
          + T P +  ID+D LC+EL
Sbjct: 76 ITTHPKYSDIDVDGLCSEL 94


>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
           {Acidianus ambivalens [TaxId: 2283]}
          Length = 307

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 112 QQGISHVTIQPEFYEVRLKVCPHIVNAVDRRLLKP 146
             G+  V + PE  +V  +V   +V     R+L P
Sbjct: 260 MFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNP 294


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,651
Number of extensions: 24734
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 9
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.0 bits)