BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11813
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The
Coiled-Coil Domain At 3.0 Angstrom Resolution
Length = 575
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 59/65 (90%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIK
Sbjct: 1 MPKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK 60
Query: 61 LYKKV 65
LYKKV
Sbjct: 61 LYKKV 65
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed
With The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M +NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+K
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 61 LYKKV 65
L KKV
Sbjct: 61 LNKKV 65
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M +NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+K
Sbjct: 3 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 62
Query: 61 LYKKV 65
L KKV
Sbjct: 63 LNKKV 67
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M +NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+K
Sbjct: 3 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 62
Query: 61 LYKKV 65
L KKV
Sbjct: 63 LNKKV 67
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M +NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+K
Sbjct: 3 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 62
Query: 61 LYKKV 65
L KKV
Sbjct: 63 LNKKV 67
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M +NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+K
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 61 LYKKV 65
L KKV
Sbjct: 61 LNKKV 65
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M +NVRVTTMDAELEFAIQ TTGKQLFDQ VKT+GLREVWFFGLQY DS+G TW+K
Sbjct: 1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 61 LYKKV 65
L KKV
Sbjct: 61 LNKKV 65
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix
Of Moesin
Length = 346
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M ++VRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+K
Sbjct: 1 MPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK 60
Query: 61 LYKKV 65
L KKV
Sbjct: 61 LNKKV 65
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 55/65 (84%)
Query: 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
M ++VRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+K
Sbjct: 1 MPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK 60
Query: 61 LYKKV 65
L KKV
Sbjct: 61 LNKKV 65
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
+NVRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVW+FGL Y D++G TW+KL KK
Sbjct: 4 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKK 63
Query: 65 VRC 67
V
Sbjct: 64 VSA 66
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 100 bits (250), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/61 (78%), Positives = 53/61 (86%)
Query: 5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
++VRVTT DAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+KL KK
Sbjct: 2 ISVRVTTXDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61
Query: 65 V 65
V
Sbjct: 62 V 62
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KKV
Sbjct: 25 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 82
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KKV
Sbjct: 25 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 82
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KKV
Sbjct: 7 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 64
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7 VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ KKV
Sbjct: 12 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 69
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 5 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
M +V +D +E ++ + G+ LFD+ + + L E +FGL Y D+ W+ K
Sbjct: 3 MQCKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLDPAK 62
Query: 64 KVR 66
+++
Sbjct: 63 EIK 65
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 5 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
M +V +D +E ++ + G+ LFD+ + + L E +FGL Y D+ W+ K
Sbjct: 3 MQCKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLDPAK 62
Query: 64 KVR 66
+++
Sbjct: 63 EIK 65
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 10 TTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTW 58
TT+D LE +++ TG + D+ K +GL V + L DS GD TW
Sbjct: 24 TTVDEALELLVENRITGFPVIDEDWKLVGL--VSDYDLLALDS-GDSTW 69
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 5 MNVRVTTMDAEL-EFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
M+ +V+ +D + E ++ G+ L + + + L E +FGL D+ TW+ K
Sbjct: 1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 60
Query: 64 KVR 66
+++
Sbjct: 61 EIK 63
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm
Domain Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm
Domain Of Protein 4.1r
Length = 296
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 13 DAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR 66
D E ++ G+ L + + + L E +FGL D+ TW+ K+++
Sbjct: 27 DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIK 80
>pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
(Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
pdb|3EUC|B Chain B, Crystal Structure Of Histidinol-Phosphate Aminotransferase
(Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
Length = 367
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 23 TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRCPNN 70
T G L +TV +GL G++ GD W++ KVR P N
Sbjct: 214 TDFGNLLVXRTVSKLGLA-----GIRLGYVAGDPQWLEQLDKVRPPYN 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,003,507
Number of Sequences: 62578
Number of extensions: 61565
Number of successful extensions: 123
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 23
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)