Query psy11813
Match_columns 70
No_of_seqs 114 out of 447
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:40:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qij_A Protein 4.1; cytoskelet 99.7 2E-18 7E-23 118.9 4.5 65 2-66 15-80 (296)
2 1h4r_A Merlin; FERM, neurofibr 99.7 6.7E-18 2.3E-22 116.1 6.0 66 1-67 19-84 (314)
3 1ef1_A Moesin; membrane, FERM 99.7 9.3E-18 3.2E-22 114.3 6.6 64 4-67 1-64 (294)
4 2i1j_A Moesin; FERM, coiled-co 99.7 1E-17 3.5E-22 124.7 6.9 67 1-67 1-67 (575)
5 3ivf_A Talin-1; FERM domain, c 99.5 8.7E-15 3E-19 102.8 5.3 66 2-67 83-153 (371)
6 2al6_A Focal adhesion kinase 1 99.2 5.6E-12 1.9E-16 89.1 4.8 62 5-66 8-75 (375)
7 2j0j_A Focal adhesion kinase 1 99.2 4E-12 1.4E-16 94.5 4.2 62 6-67 9-76 (656)
8 3pvl_A Myosin VIIA isoform 1; 99.2 1.6E-11 5.3E-16 92.7 5.1 53 2-54 261-314 (655)
9 3au4_A Myosin-X; protein-prote 99.2 3E-11 1E-15 88.6 6.2 64 2-66 214-279 (555)
10 4dxa_B KREV interaction trappe 98.5 5.1E-08 1.7E-12 67.3 2.3 60 4-67 5-82 (322)
11 4eku_A Protein-tyrosine kinase 98.3 7.6E-07 2.6E-11 63.7 5.9 61 6-66 23-95 (392)
12 2kc2_A Talin-1, F1; FERM, adhe 97.2 0.0015 5.1E-08 40.7 6.3 49 3-51 10-59 (128)
13 1vd2_A Protein kinase C, IOTA 96.3 0.02 6.7E-07 33.6 6.4 56 2-57 4-59 (89)
14 2al3_A TUG long isoform; TUG U 95.5 0.0092 3.1E-07 35.2 2.5 46 5-51 10-56 (90)
15 3phx_B Ubiquitin-like protein 93.3 0.19 6.6E-06 27.1 4.7 40 1-40 1-41 (79)
16 2hj8_A Interferon-induced 17 k 93.3 0.25 8.4E-06 27.6 5.2 40 1-40 1-41 (88)
17 1wm3_A Ubiquitin-like protein 93.2 0.18 6.2E-06 27.4 4.4 37 5-41 2-39 (72)
18 2io1_B Small ubiquitin-related 92.9 0.2 6.8E-06 28.9 4.5 40 2-41 5-45 (94)
19 2io0_B Small ubiquitin-related 92.7 0.25 8.4E-06 28.4 4.7 39 3-41 4-43 (91)
20 1wgr_A Growth factor receptor- 92.6 0.34 1.2E-05 28.7 5.3 46 3-48 8-54 (100)
21 2pjh_A Protein NPL4, nuclear p 92.4 0.052 1.8E-06 30.6 1.5 48 1-49 1-48 (80)
22 3mtn_B UBA80, ubcep1, ubiquiti 91.8 0.37 1.3E-05 26.0 4.5 38 3-40 2-40 (85)
23 2d07_B Ubiquitin-like protein 91.5 0.42 1.4E-05 27.4 4.7 39 3-41 16-55 (93)
24 1wz0_A Ubiquitin-like protein 91.3 0.46 1.6E-05 27.9 4.9 38 3-40 23-61 (104)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 91.1 0.64 2.2E-05 25.3 5.1 39 2-40 5-44 (87)
26 2uyz_B Small ubiquitin-related 91.1 0.47 1.6E-05 25.5 4.5 37 4-40 3-40 (79)
27 3dbh_I NEDD8; cell cycle, acti 90.9 0.61 2.1E-05 25.4 4.9 38 3-40 11-49 (88)
28 3n3k_B Ubiquitin; hydrolase, p 90.9 0.3 1E-05 26.4 3.5 39 3-41 2-41 (85)
29 1ndd_A NEDD8, protein (ubiquit 90.8 0.39 1.3E-05 25.2 3.9 44 5-49 1-45 (76)
30 4dwf_A HLA-B-associated transc 90.7 0.65 2.2E-05 25.6 4.9 39 2-40 3-42 (90)
31 2k8h_A Small ubiquitin protein 90.7 0.51 1.8E-05 28.1 4.7 39 3-41 25-64 (110)
32 1oey_A P67-PHOX, neutrophil cy 90.3 0.96 3.3E-05 25.9 5.4 49 2-52 3-51 (83)
33 3a9j_A Ubiquitin; protein comp 90.3 0.52 1.8E-05 24.7 4.1 44 5-49 1-45 (76)
34 3v6c_B Ubiquitin; structural g 90.0 0.71 2.4E-05 25.6 4.7 39 2-40 15-54 (91)
35 1wyw_B Ubiquitin-like protein 89.9 0.67 2.3E-05 26.3 4.6 38 3-40 20-58 (97)
36 2dzi_A Ubiquitin-like protein 89.9 1 3.4E-05 24.0 5.1 38 3-40 6-44 (81)
37 1q1o_A Cell division control p 89.7 0.68 2.3E-05 27.4 4.6 53 4-56 5-69 (98)
38 3a4r_A Nfatc2-interacting prot 89.6 0.81 2.8E-05 25.3 4.7 39 3-41 6-46 (79)
39 2eke_C Ubiquitin-like protein 89.5 0.7 2.4E-05 27.4 4.5 37 3-40 30-67 (106)
40 3kyd_D Small ubiquitin-related 88.4 0.87 3E-05 27.5 4.5 38 3-40 39-77 (115)
41 1yx5_B Ubiquitin; proteasome, 88.3 0.86 2.9E-05 25.6 4.3 36 5-40 1-37 (98)
42 3dad_A FH1/FH2 domain-containi 88.3 0.28 9.4E-06 34.8 2.5 59 4-65 15-88 (339)
43 4eew_A Large proline-rich prot 88.2 1.3 4.6E-05 24.1 5.0 38 3-40 16-54 (88)
44 3k9o_B Ubiquitin, UBB+1; E2-25 87.9 0.86 2.9E-05 25.3 4.1 36 5-40 2-38 (96)
45 4gmv_A RAS-associated and plec 87.6 1 3.5E-05 30.9 4.9 46 3-48 30-76 (281)
46 2faz_A Ubiquitin-like containi 87.5 1.3 4.5E-05 23.5 4.5 45 4-49 2-49 (78)
47 4hcn_B Polyubiquitin, ubiquiti 87.2 0.94 3.2E-05 25.6 4.0 39 2-40 20-59 (98)
48 1ttn_A DC-UBP, dendritic cell- 86.6 1.8 6.1E-05 24.8 5.0 38 3-40 22-60 (106)
49 4fbj_B NEDD8; effector-HOST ta 85.6 1.4 4.7E-05 24.4 4.1 36 5-40 1-37 (88)
50 1sif_A Ubiquitin; hydrophobic 85.6 1.4 4.9E-05 24.4 4.1 37 4-40 9-46 (88)
51 2ojr_A Ubiquitin; lanthide-bin 85.1 2.1 7.1E-05 24.8 4.8 38 3-40 34-72 (111)
52 2wyq_A HHR23A, UV excision rep 85.0 2.7 9.2E-05 22.5 5.0 35 2-36 3-38 (85)
53 3vdz_A Ubiquitin-40S ribosomal 83.5 2.3 8E-05 24.6 4.6 38 3-40 34-72 (111)
54 2kk8_A Uncharacterized protein 82.5 3.6 0.00012 22.6 4.9 38 3-40 9-47 (84)
55 1yqb_A Ubiquilin 3; structural 82.0 3.6 0.00012 23.4 4.9 39 2-40 20-58 (100)
56 2bwf_A Ubiquitin-like protein 80.9 4.3 0.00015 21.2 4.7 44 4-49 4-48 (77)
57 2kzr_A Ubiquitin thioesterase 80.5 1.4 4.9E-05 24.3 2.7 44 5-49 1-45 (86)
58 1wx8_A Riken cDNA 4931431F19; 80.5 4.3 0.00015 22.5 4.8 37 3-40 16-53 (96)
59 1v2y_A 3300001G02RIK protein; 80.4 2.3 7.9E-05 25.0 3.7 40 2-41 5-45 (105)
60 2kdi_A Ubiquitin, vacuolar pro 80.4 2.9 0.0001 24.4 4.2 39 2-40 7-46 (114)
61 1wf9_A NPL4 family protein; be 80.4 4.1 0.00014 23.4 4.8 37 4-40 7-44 (107)
62 3b08_A Polyubiquitin-C, ubiqui 79.1 3.1 0.00011 24.5 4.1 36 5-40 1-37 (152)
63 3b08_A Polyubiquitin-C, ubiqui 78.6 5.4 0.00019 23.4 5.1 46 3-49 75-121 (152)
64 3q3f_A Ribonuclease/ubiquitin 78.6 4 0.00014 26.3 4.7 39 2-40 103-142 (189)
65 1wx7_A Ubiquilin 3; ubiquitin- 78.3 5 0.00017 22.8 4.7 38 3-40 16-53 (106)
66 2l76_A Nfatc2-interacting prot 75.5 6.5 0.00022 23.0 4.6 38 3-41 20-58 (95)
67 3hk0_A Growth factor receptor- 75.0 7.6 0.00026 26.1 5.5 45 4-48 8-53 (256)
68 1we6_A Splicing factor, putati 74.3 5.8 0.0002 22.7 4.3 39 2-40 25-68 (111)
69 1wy8_A NP95-like ring finger p 74.2 8.3 0.00028 20.8 5.1 38 3-40 6-46 (89)
70 3u30_A Ubiquitin, linear DI-ub 72.9 7.6 0.00026 23.7 4.8 38 3-40 19-57 (172)
71 3rt3_B Ubiquitin-like protein 72.7 7.9 0.00027 23.2 4.8 39 2-40 79-118 (159)
72 2bye_A Phospholipase C, epsilo 72.3 9 0.00031 23.0 4.8 46 3-48 8-59 (110)
73 3b1l_X E3 ubiquitin-protein li 74.6 0.77 2.6E-05 24.3 0.0 36 5-40 1-37 (76)
74 1uel_A HHR23B, UV excision rep 72.0 7.5 0.00026 21.6 4.3 33 5-37 1-34 (95)
75 2klc_A Ubiquilin-1; ubiquitin- 71.6 8.8 0.0003 21.7 4.6 38 3-40 24-61 (101)
76 1wia_A Hypothetical ubiquitin- 71.5 10 0.00034 20.9 4.7 35 3-37 6-41 (95)
77 3m62_B UV excision repair prot 71.3 4.4 0.00015 23.2 3.2 36 5-40 2-38 (106)
78 3tix_A Ubiquitin-like protein 71.0 8.1 0.00028 25.7 4.7 38 3-41 56-94 (207)
79 2kan_A Uncharacterized protein 70.9 11 0.00039 21.0 5.0 38 3-40 14-51 (94)
80 2c5l_C Phosphoinositide-specif 70.6 9.1 0.00031 23.2 4.6 40 1-40 4-46 (117)
81 3pge_A SUMO-modified prolifera 69.8 8 0.00028 25.2 4.5 36 4-40 29-65 (200)
82 3l0w_B Monoubiquitinated proli 69.8 6.8 0.00023 24.4 4.1 36 5-40 1-37 (169)
83 2jxx_A Nfatc2-interacting prot 69.5 14 0.00047 21.3 5.1 40 3-42 24-65 (97)
84 3ivf_A Talin-1; FERM domain, c 68.8 14 0.00049 25.2 5.9 62 4-66 3-69 (371)
85 1j8c_A Ubiquitin-like protein 68.7 9.6 0.00033 22.6 4.4 37 3-40 31-68 (125)
86 3tca_A Amyloid beta A4 precurs 67.5 10 0.00035 24.5 4.7 45 3-47 33-78 (291)
87 1wgy_A RAP guanine nucleotide 66.4 14 0.00049 21.8 4.8 59 3-62 8-67 (104)
88 3rt3_B Ubiquitin-like protein 65.1 9.6 0.00033 22.8 4.0 36 5-40 3-39 (159)
89 1uh6_A Ubiquitin-like 5; beta- 63.2 17 0.00058 21.1 4.6 38 3-40 27-65 (100)
90 3u5e_m 60S ribosomal protein L 61.7 1.7 5.7E-05 25.9 0.0 36 5-40 1-37 (128)
91 1pqs_A Cell division control p 60.9 6.8 0.00023 21.9 2.5 42 15-56 3-48 (77)
92 2dhz_A RAP guanine nucleotide 60.2 7.3 0.00025 23.7 2.7 60 3-62 8-73 (120)
93 2l7r_A Ubiquitin-like protein 60.1 13 0.00044 20.6 3.6 45 3-49 18-62 (93)
94 3uf8_A Ubiquitin-like protein 59.6 18 0.00061 23.2 4.7 40 3-43 20-60 (209)
95 3ai5_A Yeast enhanced green fl 55.4 22 0.00076 24.5 4.8 38 3-40 232-270 (307)
96 1ip9_A BEM1 protein; ubiquitin 55.2 27 0.00094 20.0 4.8 38 3-40 11-48 (85)
97 1wgh_A Ubiquitin-like 3, HCG-1 53.0 32 0.0011 20.3 4.8 34 3-36 15-49 (116)
98 3plu_A Ubiquitin-like modifier 52.1 32 0.0011 19.8 4.7 38 3-40 20-58 (93)
99 1v86_A DNA segment, CHR 7, way 51.5 29 0.001 19.2 4.8 37 3-40 16-53 (95)
100 3u5c_f 40S ribosomal protein S 50.4 3.3 0.00011 25.7 0.0 36 5-40 1-37 (152)
101 2dzk_A UBX domain-containing p 50.3 34 0.0012 19.7 4.7 45 3-48 12-57 (109)
102 2ktr_A Sequestosome-1; autopha 49.3 41 0.0014 20.2 5.8 57 4-61 20-94 (117)
103 2gow_A HCG-1 protein, ubiquiti 49.2 40 0.0014 20.1 4.9 33 4-36 17-50 (125)
104 1we7_A SF3A1 protein; structur 48.0 37 0.0013 19.3 5.1 38 3-40 24-72 (115)
105 1wju_A NEDD8 ultimate buster-1 47.1 40 0.0014 19.4 4.6 46 4-50 15-65 (100)
106 2kkc_A Sequestosome-1; P62, PB 46.8 41 0.0014 19.6 5.9 59 2-61 3-79 (102)
107 1v5o_A 1700011N24RIK protein; 46.5 37 0.0013 18.9 5.3 38 3-40 6-48 (102)
108 3u30_A Ubiquitin, linear DI-ub 42.0 55 0.0019 19.7 5.1 39 3-41 95-134 (172)
109 3v7o_A Minor nucleoprotein VP3 41.9 5.4 0.00019 26.8 0.0 37 4-41 21-58 (227)
110 2lxa_A Ubiquitin-like protein 41.4 32 0.0011 19.0 3.3 35 5-39 2-40 (87)
111 3goe_A DNA repair protein RAD6 40.0 52 0.0018 18.7 5.4 58 3-65 8-66 (82)
112 1v5t_A 8430435I17RIK protein; 39.0 33 0.0011 18.7 3.1 37 3-40 6-44 (90)
113 2bkf_A Zinc-finger protein NBR 38.3 56 0.0019 18.7 6.6 55 1-58 3-59 (87)
114 3jyu_A Ubiquitin carboxyl-term 37.6 60 0.0021 21.0 4.6 38 16-53 154-191 (231)
115 1wj6_A KIAA0049 protein, RSGI 37.2 64 0.0022 19.0 6.0 54 1-57 11-66 (101)
116 1s3s_G P47 protein; AAA ATPase 36.8 58 0.002 19.2 4.1 45 4-48 52-97 (127)
117 2xzm_9 RPS31E; ribosome, trans 35.6 7.8 0.00027 25.1 0.0 36 5-40 1-37 (189)
118 2dzm_A FAS-associated factor 1 33.8 67 0.0023 18.2 4.8 36 5-40 10-45 (100)
119 2za4_B Barstar; protein-protei 32.7 25 0.00087 19.4 1.9 28 17-46 5-32 (90)
120 2kd0_A LRR repeats and ubiquit 31.9 63 0.0021 17.3 4.6 36 4-40 12-48 (85)
121 1wgd_A Homocysteine-responsive 31.3 65 0.0022 17.3 4.0 37 3-39 6-47 (93)
122 3qx1_A FAS-associated factor 1 29.7 70 0.0024 17.1 4.9 43 4-48 7-50 (84)
123 2bps_A YUKD protein; ubiquitin 29.4 77 0.0026 17.6 4.7 39 4-42 4-45 (81)
124 2l1a_A Formin-C, @; fruiting B 29.3 36 0.0012 19.8 2.2 14 1-14 4-17 (107)
125 1wgg_A Ubiquitin carboxyl-term 28.9 77 0.0027 17.4 4.7 37 3-40 6-44 (96)
126 1wj4_A KIAA0794 protein; UBX d 28.7 93 0.0032 18.3 4.9 34 3-36 42-76 (124)
127 2daj_A KIAA0977 protein, COBL- 28.5 89 0.0031 18.0 4.8 60 3-65 9-69 (91)
128 3i9v_5 NADH-quinone oxidoreduc 28.0 9.3 0.00032 25.0 -0.6 21 43-63 120-140 (207)
129 4a20_A Ubiquitin-like protein 27.8 86 0.003 17.6 4.9 37 3-39 18-58 (98)
130 3vpp_A C-type lectin domain fa 27.7 82 0.0028 17.3 3.9 23 39-61 60-82 (132)
131 4dbg_A Ranbp-type and C3HC4-ty 27.7 94 0.0032 18.0 5.8 46 5-50 25-76 (105)
132 2cx6_A Hypothetical protein YH 26.1 36 0.0012 19.0 1.8 28 17-46 5-32 (90)
133 2d68_A FOP, FGFR1OP; alpha hel 25.8 4 0.00014 23.3 -2.4 22 24-50 16-37 (82)
134 3m63_B Ubiquitin domain-contai 25.0 25 0.00084 19.8 0.9 35 5-40 29-64 (101)
135 1wxv_A BAG-family molecular ch 24.0 91 0.0031 16.6 5.1 38 3-40 6-48 (92)
136 2wac_A CG7008-PA; unknown func 23.4 53 0.0018 20.3 2.3 36 1-37 1-36 (218)
137 1t0y_A Tubulin folding cofacto 23.2 1.1E+02 0.0039 17.5 7.2 51 1-52 3-55 (122)
138 3hcn_A Ferrochelatase, mitocho 23.1 57 0.0019 22.8 2.6 31 30-62 220-250 (359)
139 2cr5_A Reproduction 8; UBX dom 22.6 1.2E+02 0.0039 17.3 4.7 34 3-36 22-56 (109)
140 2kdb_A Homocysteine-responsive 21.3 1.2E+02 0.0041 17.0 4.3 35 3-37 22-59 (99)
141 1oqy_A HHR23A, UV excision rep 21.2 87 0.003 21.9 3.3 34 3-36 6-40 (368)
142 1se9_A Ubiquitin family; ubiqu 21.2 1.4E+02 0.0049 17.8 4.8 33 4-36 16-50 (126)
143 2kmm_A Guanosine-3',5'-BIS(dip 20.3 99 0.0034 15.6 3.2 28 5-33 1-28 (73)
No 1
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.73 E-value=2e-18 Score=118.94 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=60.2
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeec
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR 66 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~ 66 (70)
.+.+.|+|.++|| ..++.|+++++|++|++.||++|||.|.+||||+|.+.++..+|||++|+|+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~ 80 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIK 80 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHH
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHH
Confidence 4668999999999 6789999999999999999999999999999999999889999999999885
No 2
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.72 E-value=6.7e-18 Score=116.14 Aligned_cols=66 Identities=47% Similarity=0.834 Sum_probs=61.1
Q ss_pred CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC 67 (70)
Q Consensus 1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~ 67 (70)
+++.+.|+|.++||++++.++++++|++|++.||++|||.|.+||||+|. .++..+||+++++|..
T Consensus 19 ~~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~ 84 (314)
T 1h4r_A 19 QPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLD 84 (314)
T ss_dssp --CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGG
T ss_pred CCCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHH
Confidence 46789999999999888999999999999999999999999999999998 7788999999999875
No 3
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.72 E-value=9.3e-18 Score=114.25 Aligned_cols=64 Identities=77% Similarity=1.152 Sum_probs=61.1
Q ss_pred eEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813 4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC 67 (70)
Q Consensus 4 ~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~ 67 (70)
++.|+|.++||++++.++++++|+++++.||++|||.|.+||||+|.+.++..+|||++++|..
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~ 64 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTA 64 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHh
Confidence 4789999999998999999999999999999999999999999999999999999999999875
No 4
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.71 E-value=1e-17 Score=124.73 Aligned_cols=67 Identities=87% Similarity=1.265 Sum_probs=63.0
Q ss_pred CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC 67 (70)
Q Consensus 1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~ 67 (70)
|++++.|+|.++||+++|.|+++++|++||+.||++|||.|.+||||+|.++.+..+|||++++|..
T Consensus 1 ~~k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~ 67 (575)
T 2i1j_A 1 MPKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQ 67 (575)
T ss_dssp --CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGG
T ss_pred CCceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHH
Confidence 7899999999999988999999999999999999999999999999999999999999999999875
No 5
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.52 E-value=8.7e-15 Score=102.77 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=55.5
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC----CCCeecccCCCeecC
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS----RGDLTWIKLYKKVRC 67 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~----~~~~~WLd~~k~i~~ 67 (70)
++.+.|+|.++|| ...+.++++++|+++++.||++|+|.|.+||||.+.+. ++...||+++|+++.
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~ 153 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLRE 153 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGG
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHh
Confidence 4678999999999 57799999999999999999999999999999999864 578899999999864
No 6
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.24 E-value=5.6e-12 Score=89.08 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=55.2
Q ss_pred EEEEEEecCC-----eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC-CCCeecccCCCeec
Q psy11813 5 MNVRVTTMDA-----ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKVR 66 (70)
Q Consensus 5 ~~~~V~lLD~-----~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~k~i~ 66 (70)
-.|+|.++|| ...|.++++++|++|++.||++++|.|.+||||++.+. .+..+||+++++|.
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~ 75 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVS 75 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHH
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchh
Confidence 3567888888 55699999999999999999999999999999999875 57789999999985
No 7
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.24 E-value=4e-12 Score=94.51 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=55.5
Q ss_pred EEEEEecCCe----E-EEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC-CCCeecccCCCeecC
Q psy11813 6 NVRVTTMDAE----L-EFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKVRC 67 (70)
Q Consensus 6 ~~~V~lLD~~----~-~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~k~i~~ 67 (70)
.|.|.+.|++ . ++.++.++++++|++.||++++|.|++||||+|.+. .++.+||+++++|..
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 4668888875 5 499999999999999999999999999999999877 689999999999764
No 8
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=99.19 E-value=1.6e-11 Score=92.65 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=48.4
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCC
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRG 54 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~ 54 (70)
++.+.|+|.++|| ..+|.|+++++|+++++.||+++||.|.+||||.|.+.+.
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~dk 314 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDK 314 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETTE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCCc
Confidence 4678999999999 6789999999999999999999999999999999976543
No 9
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=99.18 E-value=3e-11 Score=88.57 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=55.6
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee-eeeeeEEEecCCCCeecccCCCeec
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRGDLTWIKLYKKVR 66 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~k~i~ 66 (70)
++.+.|+|.++|| ..++.++++++|++|++.||+++||.| .+||||.+.+ .+..+||++++.|.
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~-~~~~~~L~~~~~i~ 279 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYN-GHVDKAIESRTVVA 279 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEES-SSCEEECCTTSBHH
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEe-CCeeEecCCCCchh
Confidence 5678999999999 678999999999999999999999998 8999998764 55678888876653
No 10
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=98.47 E-value=5.1e-08 Score=67.32 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=47.9
Q ss_pred eEEEEEEecCC-eEEEEEcc--cCchhhhHHHHhcccCce--eeeeeeEEEecCCCC-------------eecccCCCee
Q psy11813 4 LMNVRVTTMDA-ELEFAIQH--TTTGKQLFDQTVKTIGLR--EVWFFGLQYADSRGD-------------LTWIKLYKKV 65 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~--~~~G~~L~d~Vc~~L~L~--E~dYFGL~y~d~~~~-------------~~WLd~~k~i 65 (70)
.+.|+|.++|| ...+.++. +++|+++ |++++|. +.+||||.+.++..+ ..|.++.+++
T Consensus 5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~~l~~~ 80 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAEL 80 (322)
T ss_dssp CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHHHHHHH
T ss_pred ceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCccccccCccccHHHHHHHHHHHHHHh
Confidence 36899999999 67799998 9999999 5667875 789999999886543 4788876665
Q ss_pred cC
Q psy11813 66 RC 67 (70)
Q Consensus 66 ~~ 67 (70)
..
T Consensus 81 ~~ 82 (322)
T 4dxa_B 81 TN 82 (322)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 11
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=98.35 E-value=7.6e-07 Score=63.72 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=51.9
Q ss_pred EEEEEe------cCCe-EEEEEcccCchhhhHHHHh--cccC--ceeeeeeeEEEec-CCCCeecccCCCeec
Q psy11813 6 NVRVTT------MDAE-LEFAIQHTTTGKQLFDQTV--KTIG--LREVWFFGLQYAD-SRGDLTWIKLYKKVR 66 (70)
Q Consensus 6 ~~~V~l------LD~~-~~~~v~~~~~G~~L~d~Vc--~~L~--L~E~dYFGL~y~d-~~~~~~WLd~~k~i~ 66 (70)
..+|.+ +||+ ..+.++..++.+++++.|| ..+| +.+.+||||++.. ..+..+||++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~ 95 (392)
T 4eku_A 23 ILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVG 95 (392)
T ss_dssp EEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHH
T ss_pred eEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHH
Confidence 467788 8995 4699999999999999999 6776 4799999999964 467889999999985
No 12
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.15 E-value=0.0015 Score=40.69 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=38.7
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEec
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD 51 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d 51 (70)
+.-..+|.++|+ ..++.|+...+-..+-..||+.+||.-.+=|+|....
T Consensus 10 k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~ 59 (128)
T 2kc2_A 10 HMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVREL 59 (128)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEEC
T ss_pred CCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccc
Confidence 344789999999 5679999888877777889999999744336888643
No 13
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.28 E-value=0.02 Score=33.56 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=49.0
Q ss_pred CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCee
Q psy11813 2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT 57 (70)
Q Consensus 2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~ 57 (70)
+..+.+++.+-++.+-+.+++..+=++|.++|.+.+.+.+.+=|.+.|.|.+|.+.
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCE
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcc
Confidence 34588999999888889999999999999999999999988999999999876543
No 14
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.46 E-value=0.0092 Score=35.18 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=38.4
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEec
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD 51 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d 51 (70)
|.+.|..-++ ...+.+.+.++=.++++++|+++++ +.+-++|.|.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl-~~~~~~Lkh~~ 56 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF-NPSEYDLKFQR 56 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC-CGGGCEEEETT
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCC-ChhhCeEEeCC
Confidence 5667777777 7889999999999999999999999 45666999853
No 15
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=93.31 E-value=0.19 Score=27.13 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 1 MNGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 1 ~~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|...|.+.|..++| ++.+.+++.++-.+|=.++.+..++.
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 41 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CCCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC
Confidence 56789999999999 78899999999999999999998875
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=93.29 E-value=0.25 Score=27.56 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 1 MNGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 1 ~~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|...|.+.|..++| .+.+.+++.++-.+|-.++.+..++.
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 41 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 66789999999998 78899999999999999999998864
No 17
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=93.18 E-value=0.18 Score=27.40 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=33.7
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
|.++|...+| ++.|.|.+.++=+.|++..|++.++.-
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 6889999999 799999999999999999999999753
No 18
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.89 E-value=0.2 Score=28.93 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=35.3
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
+..|+++|...++ ++.|.|.+.++=+.|++..|++.++.-
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 3468999999999 799999999999999999999999853
No 19
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.67 E-value=0.25 Score=28.42 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=35.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..+.++|...++ ++.|.|.+.++=+.|++..|+..++.-
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 468899999999 799999999999999999999999854
No 20
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=92.63 E-value=0.34 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=40.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 48 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~ 48 (70)
+...|+|...|| ...+.|++..+.+++.+..++..++.....+.|-
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv 54 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV 54 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence 457899999999 6779999999999999999999998877766665
No 21
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=92.44 E-value=0.052 Score=30.58 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
|.+.|.+||+.-+|+..++++++++-.+|++++.+.+++.. +.|.+.+
T Consensus 1 ~~~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~-~~~~l~~ 48 (80)
T 2pjh_A 1 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQN-NGFSVYI 48 (80)
T ss_dssp -CCCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCT-TTCCCCC
T ss_pred CCCcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCC-CcceEEe
Confidence 66778999999999888889999999999999999999642 4455544
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=91.80 E-value=0.37 Score=26.00 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=33.9
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+++ ++.+.+++.++-.+|-+++++..++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 40 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 40 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 468999999998 78899999999999999999999874
No 23
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=91.47 E-value=0.42 Score=27.36 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=35.1
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..+.++|...++ .+.|.|.+.++=+.|++..|++.++.-
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 55 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 55 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence 468899999998 789999999999999999999999853
No 24
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.32 E-value=0.46 Score=27.95 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=34.6
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.++|...++ .+.|.|.+.++=+.|++..|++.++.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~ 61 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 61 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC
Confidence 368899999999 79999999999999999999999985
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.10 E-value=0.64 Score=25.34 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=34.6
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|.+.|..+++ ++++++++.++-.+|-+++++..++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 44 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP 44 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC
Confidence 3568999999998 78899999999999999999998864
No 26
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=91.07 E-value=0.47 Score=25.49 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.8
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
.|.+.|..++| ++.+.|.+.++=.+|.+++++..++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~ 40 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 40 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 58899999999 78899999999999999999999875
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=90.92 E-value=0.61 Score=25.36 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=34.5
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+++ .+.+.+++.++-.+|-.++++..++.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 49 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 49 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 468999999998 78899999999999999999999875
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.86 E-value=0.3 Score=26.44 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=33.5
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..|.+.|..+++ ++.+++++.++-.+|-+++++..++..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~ 41 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 468899999998 788999999999999999999998743
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=90.83 E-value=0.39 Score=25.22 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=35.6
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
|.+.|..++| ++.+.+++.++-.+|-+++++..++.. +..-|.|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~ 45 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIY 45 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-HHEEEEE
Confidence 5788999998 788999999999999999999998752 3334444
No 30
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=90.71 E-value=0.65 Score=25.58 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=34.9
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|.+.|..+++ ++.+.|++.++-.+|=.++.+..++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 42 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 42 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4679999999999 78899999999999999999998874
No 31
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=90.66 E-value=0.51 Score=28.12 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=35.1
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..|.++|...++ .+.|.|.+.++=+.|++..|+..++.-
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~ 64 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR 64 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 358999999999 799999999999999999999999853
No 32
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.29 E-value=0.96 Score=25.95 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=40.7
Q ss_pred CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC
Q psy11813 2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS 52 (70)
Q Consensus 2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~ 52 (70)
+..+.++|+.= .++-+.+++...=++|.++|++.|.+. .+.-=|.|.+.
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEEECCT
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEEeeCC
Confidence 34578888888 588899999999999999999999996 34457889875
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=90.28 E-value=0.52 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=35.7
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
|.+.|..+++ .+.+.+++.++-.+|-+++++..++.. +..-|.|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~ 45 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 45 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEE
Confidence 5788999998 788999999999999999999998752 3344555
No 34
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=89.98 E-value=0.71 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=34.8
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|.+.|..++| ++.+.+++.++-.+|=.++++..++.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 54 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP 54 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 3568999999998 78899999999999999999999874
No 35
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=89.89 E-value=0.67 Score=26.32 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.4
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..++| ++.+.|.+.++=..|.+++++..++.
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip 58 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 58 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 458999999999 78899999999999999999999975
No 36
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.86 E-value=1 Score=24.02 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=33.8
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..++| .+.+.+++.++-.+|-+++.+..++.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 568899999988 78899999999999999999998874
No 37
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.75 E-value=0.68 Score=27.42 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=42.0
Q ss_pred eEEEEEEecC-------C-eEEEEEcccCchhhhHHHHhcccCceee----eeeeEEEecCCCCe
Q psy11813 4 LMNVRVTTMD-------A-ELEFAIQHTTTGKQLFDQTVKTIGLREV----WFFGLQYADSRGDL 56 (70)
Q Consensus 4 ~~~~~V~lLD-------~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~----dYFGL~y~d~~~~~ 56 (70)
.+.++|+.-+ + ...+.|++...=++|.+++.+.+++... .-+.|+|.|.+|..
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~ 69 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDF 69 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCE
Confidence 4678888763 2 4678899999999999999999998633 33899999987644
No 38
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=89.63 E-value=0.81 Score=25.27 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=34.7
Q ss_pred ceEEEEEEecCC--eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA--ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~--~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..|.++|...++ .+.|.|.+.++=+.|++..|++.++.-
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~ 46 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG 46 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 458899999998 488999999999999999999999853
No 39
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=89.47 E-value=0.7 Score=27.39 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=33.7
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.++|.. ++ ++.|.|.+.++=+-|++..|++.++.
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~ 67 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE 67 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 458999999 98 78999999999999999999999975
No 40
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=88.35 E-value=0.87 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..+.++|...|+ ++.|.|.+.++=+-|++..|++.++.
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~ 77 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 77 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence 358899999998 78999999999999999999999974
No 41
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=88.35 E-value=0.86 Score=25.63 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=32.4
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| .+.+.+++.++-.+|-.++.+..++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~ 37 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 5788999998 78899999999999999999999874
No 42
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=88.34 E-value=0.28 Score=34.80 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=41.8
Q ss_pred eEEEEEEecCCe--EE---E---------EEcccCchhhhHHHHhcccCcee-eeeeeEEEecCCCCeecccCCCee
Q psy11813 4 LMNVRVTTMDAE--LE---F---------AIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRGDLTWIKLYKKV 65 (70)
Q Consensus 4 ~~~~~V~lLD~~--~~---~---------~v~~~~~G~~L~d~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~k~i 65 (70)
.+.|+|..||++ .. | .++.+..=...+..||+++++.. .+.+-|||.+.. .+|+++-.+
T Consensus 15 ~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~~---~Yl~~~~~l 88 (339)
T 3dad_A 15 VVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSG---YYLDTELSL 88 (339)
T ss_dssp EEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTTC---CBCCTTSCT
T ss_pred eeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCCC---Ceeccccch
Confidence 589999999972 21 2 22334444566789999999998 789999996543 588866443
No 43
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=88.22 E-value=1.3 Score=24.15 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=34.1
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..++| .+.+.+++.++-.+|=.++.+..++.
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 54 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 54 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 568999999998 78899999999999999999998874
No 44
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=87.93 E-value=0.86 Score=25.32 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=32.7
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..+++ ++.+.+++.++-.+|-.++++..++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip 38 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 38 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 6789999998 78899999999999999999999874
No 45
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=87.61 E-value=1 Score=30.89 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=38.8
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 48 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~ 48 (70)
+.+.|+|.+.|+ ...+.|++..+..+|.+..+...++...+...|-
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~ 76 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLV 76 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEE
Confidence 567899999999 7889999999999999999988887666655543
No 46
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=87.47 E-value=1.3 Score=23.50 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=36.2
Q ss_pred eEEEEEEecCC-eE-EEE-EcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 4 LMNVRVTTMDA-EL-EFA-IQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 4 ~~~~~V~lLD~-~~-~~~-v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
.|.+.|..++| ++ .++ +++.++-.+|-.++.+..++. .+..-|.|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~~ 49 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLFY 49 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 58899999998 65 898 999999999999999999874 23334444
No 47
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=87.24 E-value=0.94 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=33.8
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|.+.|..++| .+.+.+++.++-.+|=.++++..++.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 59 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 59 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 3568999999998 78899999999999999999999874
No 48
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.56 E-value=1.8 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=34.0
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..++| .+.+.+.+.++-.+|-.++++..++.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 60 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE 60 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC
Confidence 458999999999 78899999999999999999998874
No 49
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=85.61 E-value=1.4 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=32.1
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| ++.+.+++.++-.+|=.++.+..++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 5788999998 78899999999999999999998874
No 50
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=85.59 E-value=1.4 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=33.0
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
.|.+.|..++| ++.+++++.++-.+|-+++++..++.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP 46 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 47889999999 78899999999999999999999874
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=85.08 E-value=2.1 Score=24.77 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=34.0
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+++ .+.+.+++.++-.+|-.++++..++.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 468999999998 78899999999999999999999874
No 52
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=85.01 E-value=2.7 Score=22.54 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=31.0
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~ 36 (70)
+..|.+.|..++| .+++++++.++-.+|-+++.+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~ 38 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAE 38 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhh
Confidence 3568899999998 7889999999999999999997
No 53
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=83.51 E-value=2.3 Score=24.63 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=34.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+++ ++.+.+.+.++-.+|=.++++..++.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 358999999998 78899999999999999999999874
No 54
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=82.53 E-value=3.6 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=34.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.| ++++++++.++-.+|=.++.+..++.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip 47 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP 47 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 458999999999 78899999999999999999999864
No 55
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=81.95 E-value=3.6 Score=23.38 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.4
Q ss_pred CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
...|.+.|..+.+..++++++.++-.+|-+++.+..++.
T Consensus 20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip 58 (100)
T 1yqb_A 20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH 58 (100)
T ss_dssp TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 356899999999877899999999999999999999874
No 56
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=80.85 E-value=4.3 Score=21.17 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=34.4
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
.|.+.|.. +| .+++.+++.++-.+|-.++.+..++. .+..-|.|
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~ 48 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP-VANQRLIY 48 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEEE
Confidence 37788888 77 78899999999999999999998874 23334444
No 57
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=80.48 E-value=1.4 Score=24.29 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=35.5
Q ss_pred EEEEEEecCCeEEEE-EcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 5 MNVRVTTMDAELEFA-IQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 5 ~~~~V~lLD~~~~~~-v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
|.++|..++|...+. +++.++-.+|-..+.+..++. .+.+.|.|
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~~ 45 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIA-PGSQRILV 45 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCEE
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCC-ccceEEEe
Confidence 568999999955577 899999999999999998864 34556666
No 58
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.46 E-value=4.3 Score=22.47 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=32.7
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+ + .+++.+++.++-.+|-+++.+..++.
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip 53 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN 53 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 5688999988 6 78899999999999999999998864
No 59
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.43 E-value=2.3 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=34.1
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
+..|.+.|..|++ +++++|++.++=.+|=.+|-+..++..
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~ 45 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQ 45 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 3568999999999 789999999999999888888877643
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=80.42 E-value=2.9 Score=24.40 Aligned_cols=39 Identities=10% Similarity=0.240 Sum_probs=34.7
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..+.+.|..++| ++.+++++.++-.+|-.++.+..++.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 46 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4568899999999 78899999999999999999998874
No 61
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=80.35 E-value=4.1 Score=23.43 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=32.6
Q ss_pred eEEEEEEecCCeEEEEEc-ccCchhhhHHHHhcccCce
Q psy11813 4 LMNVRVTTMDAELEFAIQ-HTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 4 ~~~~~V~lLD~~~~~~v~-~~~~G~~L~d~Vc~~L~L~ 40 (70)
.|.++|..++|...++++ +.++=.+|-+++.+..++.
T Consensus 7 ~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip 44 (107)
T 1wf9_A 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIP 44 (107)
T ss_dssp CEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcC
Confidence 378999999996688999 9999999999999999863
No 62
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=79.08 E-value=3.1 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=32.3
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| .+++.+++.++-.+|-.++++..++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 5788999998 78899999999999999999999875
No 63
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=78.63 E-value=5.4 Score=23.37 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=37.1
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
..+.+.|..++| ++++.+++.++-.+|-.++++..++. .+-.-|.|
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~qrL~~ 121 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF 121 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhhEEEEE
Confidence 347888999999 78899999999999999999998875 33344555
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=78.60 E-value=4 Score=26.30 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=34.6
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|++.|..++| ++.+.|++.++-.+|=.++.+..++.
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp 142 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 142 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC
Confidence 3468999999999 78899999999999999999998874
No 65
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.31 E-value=5 Score=22.79 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=33.4
Q ss_pred ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.+.+.+++++.++-.+|-.++.+..++.
T Consensus 16 ~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip 53 (106)
T 1wx7_A 16 HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH 53 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCC
T ss_pred ceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 46889999998877899999999999999999998864
No 66
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=75.47 E-value=6.5 Score=23.02 Aligned_cols=38 Identities=11% Similarity=0.298 Sum_probs=32.7
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
+.+.++|.- +| ++.|.|.+.++=+-|++.-|++.|+.-
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~ 58 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSP 58 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCG
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCCh
Confidence 458889984 55 788999999999999999999999743
No 67
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=75.04 E-value=7.6 Score=26.09 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=33.1
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 48 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~ 48 (70)
...|+|.+-|+ ...+.|++..+..+|.+.+...-+....++.-|-
T Consensus 8 ~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~ 53 (256)
T 3hk0_A 8 KQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLV 53 (256)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEE
T ss_pred ceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEE
Confidence 45789999998 7889999999999999999988777777766654
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=74.32 E-value=5.8 Score=22.73 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=33.7
Q ss_pred CceEEEEEEec---CC-eEEEEEcc-cCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTM---DA-ELEFAIQH-TTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lL---D~-~~~~~v~~-~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|++.|..+ .+ .+.+.+++ .++-.+|=.++.+..++.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip 68 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP 68 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC
Confidence 35688999998 77 78899998 999999999999998864
No 69
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.23 E-value=8.3 Score=20.77 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred ceEEEEEEecCC--eEEE-EEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA--ELEF-AIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~--~~~~-~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+++ .+.+ .+++.++-.+|-.++.+..++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip 46 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR 46 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC
Confidence 568999999988 4779 5999999999999999998864
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=72.91 E-value=7.6 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=34.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.| ++.+.+++.++-.+|=.++.+..++.
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 57 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 57 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 568999999999 78899999999999999999998874
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=72.71 E-value=7.9 Score=23.17 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+..|.+.|..++| ++.+.+++.++-.+|=.++.+..++.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 118 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 118 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC
Confidence 3568888999998 78899999999999999999998875
No 72
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=72.32 E-value=9 Score=23.03 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=35.7
Q ss_pred ceEEEEEEecCC--eEE-EEEcccCchhhhHHHHhcccCce---eeeeeeEE
Q psy11813 3 GLMNVRVTTMDA--ELE-FAIQHTTTGKQLFDQTVKTIGLR---EVWFFGLQ 48 (70)
Q Consensus 3 ~~~~~~V~lLD~--~~~-~~v~~~~~G~~L~d~Vc~~L~L~---E~dYFGL~ 48 (70)
++..++|+-.-+ .+. |.++..++.++|++++....+.. ..+||=..
T Consensus 8 ~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~E 59 (110)
T 2bye_A 8 QTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLME 59 (110)
T ss_dssp CCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEE
T ss_pred cEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEE
Confidence 456788887665 455 89999999999999999999865 55676544
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=74.64 E-value=0.77 Score=24.30 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=30.7
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| ++.+++++.++-.+|-+++.+..++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 37 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP 37 (76)
Confidence 4677888888 67899999999999999999988864
No 74
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.02 E-value=7.5 Score=21.56 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.3
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhccc
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTI 37 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L 37 (70)
|.+.|..++| .+++++++.++-.+|-+++.+.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~ 34 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEK 34 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhc
Confidence 5788999988 78899999999999999999884
No 75
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=71.61 E-value=8.8 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=32.5
Q ss_pred ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+...+++.+++.++-.+|-+++.+..++.
T Consensus 24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 45888999883378899999999999999999999874
No 76
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.52 E-value=10 Score=20.87 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.6
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhccc
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTI 37 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L 37 (70)
..|.+.|..+++ .+.+.+++.++=.+|-.++++..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC
Confidence 458899999998 78899999999999999988775
No 77
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=71.33 E-value=4.4 Score=23.21 Aligned_cols=36 Identities=6% Similarity=0.147 Sum_probs=31.5
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..+.| .+.+.+++.++-.+|=.++.+..++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 38 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE 38 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 6788999998 78899999999999999999999874
No 78
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=71.00 E-value=8.1 Score=25.66 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=32.9
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..|.++|. .|+ ++.|.|.+.++=+-|++..|++.++.-
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~ 94 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 94 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 35888997 477 789999999999999999999999754
No 79
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=70.91 E-value=11 Score=20.95 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=33.3
Q ss_pred ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.+++++++++.++-.+|=.++.+..++.
T Consensus 14 ~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip 51 (94)
T 2kan_A 14 RKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTP 51 (94)
T ss_dssp CCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSC
T ss_pred CCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 46889999988888899999999999999999988874
No 80
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=70.65 E-value=9.1 Score=23.16 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=32.5
Q ss_pred CCceEEEEEEecCC--eEE-EEEcccCchhhhHHHHhcccCce
Q psy11813 1 MNGLMNVRVTTMDA--ELE-FAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 1 ~~~~~~~~V~lLD~--~~~-~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+++.|+|+-.-. .+. +.+...++.++++.++....+..
T Consensus 4 ~~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 4 EEESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp -CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 46788889987665 454 99999999999999999997753
No 81
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=69.83 E-value=8 Score=25.24 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.1
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
.+.++|. .++ .+.|.|.+.++=+-|++..|++.|+.
T Consensus 29 ~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~ 65 (200)
T 3pge_A 29 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE 65 (200)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC
T ss_pred eEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC
Confidence 4788997 487 78999999999999999999999984
No 82
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=69.77 E-value=6.8 Score=24.40 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=32.2
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| ++.+.+++.++-.+|=.++.+..++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip 37 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 5788999999 78899999999999999999998863
No 83
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=69.55 E-value=14 Score=21.34 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=34.0
Q ss_pred ceEEEEEEecCC--eEEEEEcccCchhhhHHHHhcccCceee
Q psy11813 3 GLMNVRVTTMDA--ELEFAIQHTTTGKQLFDQTVKTIGLREV 42 (70)
Q Consensus 3 ~~~~~~V~lLD~--~~~~~v~~~~~G~~L~d~Vc~~L~L~E~ 42 (70)
..+.++|.--|+ .+.|.|.+.++=+-|++.-|++.++...
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~ 65 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGR 65 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSS
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcc
Confidence 457888888887 4789999999999999999999998544
No 84
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=68.82 E-value=14 Score=25.19 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=48.5
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccC---ceeeeeeeEEEecCC-CCeecccCCCeec
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIG---LREVWFFGLQYADSR-GDLTWIKLYKKVR 66 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~---L~E~dYFGL~y~d~~-~~~~WLd~~k~i~ 66 (70)
.++.+|++- + +-.+..+++++=.+....|.+.+. ..+-+=+||--.+.+ ....||+.++.+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~ 69 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALD 69 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGG
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHH
Confidence 467788887 6 556999999999999999999886 446677899997663 4468999988653
No 85
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.68 E-value=9.6 Score=22.58 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=32.7
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+ + .+++.+++.++-.+|-.++.+..++.
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 68 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ 68 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4688999988 6 78899999999999999999998874
No 86
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=67.50 E-value=10 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=36.4
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeE
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGL 47 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL 47 (70)
+.+.|+|...|+ ...+.|++..+..++.+.++...++.......|
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l 78 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCL 78 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEE
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEE
Confidence 456799999999 567999999999999999999888765544444
No 87
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.36 E-value=14 Score=21.84 Aligned_cols=59 Identities=8% Similarity=0.068 Sum_probs=43.0
Q ss_pred ceEEEEEEecCCe-EEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCC
Q psy11813 3 GLMNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY 62 (70)
Q Consensus 3 ~~~~~~V~lLD~~-~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~ 62 (70)
..+.|+|...|.+ +.+.+...++.++++..|.+.++..|.+ .=|.=+...|.+.=+.++
T Consensus 8 D~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~-l~Lv~v~ssGEk~~lqp~ 67 (104)
T 1wgy_A 8 EEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEED-LALVAITFSGEKHELQPN 67 (104)
T ss_dssp SCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGG-EEEEEECSSCCCCBCCTT
T ss_pred CceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccc-eEEEEEccCCcEeecCCc
Confidence 3567999999985 5688999999999999999999976543 223334555666555544
No 88
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=65.12 E-value=9.6 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=32.8
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..+.| ++.+++++.++-.+|=.++.+..++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 39 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH 39 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 7788999999 78899999999999999999999975
No 89
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.24 E-value=17 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=33.6
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.| .+.++|++.++=.+|=++|.+.-++.
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip 65 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR 65 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 358899999988 78999999999999999999998864
No 90
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=61.68 E-value=1.7 Score=25.86 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| +++++|++.++-.+|=.++.+..++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (128)
T ss_dssp -------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC
Confidence 4677888998 78899999999999999999888864
No 91
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=60.89 E-value=6.8 Score=21.90 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=33.9
Q ss_pred eEEEEEcccCchhhhHHHHhcccCce---e-eeeeeEEEecCCCCe
Q psy11813 15 ELEFAIQHTTTGKQLFDQTVKTIGLR---E-VWFFGLQYADSRGDL 56 (70)
Q Consensus 15 ~~~~~v~~~~~G~~L~d~Vc~~L~L~---E-~dYFGL~y~d~~~~~ 56 (70)
.+.+.|++..+=++|.+++.+.+++. + +.-+.|+|.|.+|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~ 48 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDF 48 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCE
Confidence 35678899999999999999999974 1 356899999976643
No 92
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=60.18 E-value=7.3 Score=23.71 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=42.7
Q ss_pred ceEEEEEEecCCe-EEEEEcccCchhhhHHHHhcccCceee-----eeeeEEEecCCCCeecccCC
Q psy11813 3 GLMNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREV-----WFFGLQYADSRGDLTWIKLY 62 (70)
Q Consensus 3 ~~~~~~V~lLD~~-~~~~v~~~~~G~~L~d~Vc~~L~L~E~-----dYFGL~y~d~~~~~~WLd~~ 62 (70)
..+.|+|.+.|.+ +.+.+...++.++++..|.+.++..|. +=.=|.=+...|.+.=|.++
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~ 73 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPT 73 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTT
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCc
Confidence 3578999999985 568999999999999999999987663 12233334445555544443
No 93
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=60.10 E-value=13 Score=20.56 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=32.9
Q ss_pred ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813 3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY 49 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y 49 (70)
..|.+.|.. ...+.+++++.++-.+|-.++++..++. .+..-|.|
T Consensus 18 ~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 62 (93)
T 2l7r_A 18 GSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIA-PEDQVVLL 62 (93)
T ss_dssp --CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCC-GGGCEEEE
T ss_pred CcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhHEEEEE
Confidence 357788887 2378899999999999999999998864 23334444
No 94
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=59.59 E-value=18 Score=23.21 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=33.6
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVW 43 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~d 43 (70)
..+.++|.- ++ ++.|.|.+.++=+-|++.-|++.++....
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~ 60 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS 60 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGG
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChhe
Confidence 357788886 66 78999999999999999999999985443
No 95
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=55.43 E-value=22 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=33.8
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+++ .+.+++++.++-.+|=.++.+..++.
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp 270 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 270 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 568899999998 78899999999999999999988874
No 96
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=55.19 E-value=27 Score=19.97 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=33.3
Q ss_pred ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+.+.++|..=|+.+-+.++....=++|.++++.+|.+.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34778888888888899999999999999999999983
No 97
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.03 E-value=32 Score=20.25 Aligned_cols=34 Identities=12% Similarity=0.306 Sum_probs=30.0
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~ 36 (70)
..|.++|.++.| ++.+++++.++=.+|=+.|.+.
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~ 49 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 49 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHh
Confidence 358899999999 7889999999999998999884
No 98
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=52.10 E-value=32 Score=19.78 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=33.7
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.| ++.+.+++..+=.+|=+++.+..|+.
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip 58 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ 58 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC
Confidence 468899998888 89999999999999999999999974
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.50 E-value=29 Score=19.18 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=30.4
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.++|.. .+ .+++++++.++-.+|=.++.+..++.
T Consensus 16 ~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip 53 (95)
T 1v86_A 16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLP 53 (95)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 357788874 56 78899999999999999999888863
No 100
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=50.40 E-value=3.3 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..++| ++.++|++.++-.+|=.++.+..++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip 37 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (152)
T ss_dssp -------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 5678888988 77899999999999999998888763
No 101
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=50.35 E-value=34 Score=19.67 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=34.0
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 48 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~ 48 (70)
....++|++.|| .+.-......+=++|++-|-.+.+.. ..-|-|.
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~-~~~f~L~ 57 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT-YGNFSLA 57 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS-SCSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC-CCceEEE
Confidence 346899999999 67888888888999999998887532 2334444
No 102
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=49.33 E-value=41 Score=20.20 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=36.7
Q ss_pred eEEEEEEec-----CCeEE-EEEccc----C-------chhhhHHHHhccc-CceeeeeeeEEEecCCCCeecccC
Q psy11813 4 LMNVRVTTM-----DAELE-FAIQHT----T-------TGKQLFDQTVKTI-GLREVWFFGLQYADSRGDLTWIKL 61 (70)
Q Consensus 4 ~~~~~V~lL-----D~~~~-~~v~~~----~-------~G~~L~d~Vc~~L-~L~E~dYFGL~y~d~~~~~~WLd~ 61 (70)
.+++++.++ +.++. |.++.. . .=.+|.+.|-+-. +|.+.. |-+.|.|.+|....+-.
T Consensus 20 ~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~-f~l~YkDEdGDlItISs 94 (117)
T 2ktr_A 20 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGG-FQAHYRAERGDLVAFSS 94 (117)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSC-EEEEEECTTCCEEEECS
T ss_pred cEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCc-EEEEEECCCCCEEEecC
Confidence 478888888 33444 888632 1 3344555555555 455444 99999999888776543
No 103
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=49.23 E-value=40 Score=20.08 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=29.3
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~ 36 (70)
.|.++|.++.| +..+++++.++=.+|=+.|.+.
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~ 50 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 50 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSS
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHH
Confidence 48899999999 7889999999999998899884
No 104
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=48.00 E-value=37 Score=19.34 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=30.6
Q ss_pred ceEEEEEEec----------CC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTM----------DA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lL----------D~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..+++.|..- +| .+++.+++.++-.+|=.++.+..++.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMP 72 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCC
Confidence 4567777764 46 67899999999999999999988864
No 105
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.05 E-value=40 Score=19.45 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=36.5
Q ss_pred eEEEEEEecC----C-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813 4 LMNVRVTTMD----A-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA 50 (70)
Q Consensus 4 ~~~~~V~lLD----~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~ 50 (70)
..+..|.+-+ + .++++|++.++..+|=.+|.+..++. .+..=|-|.
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip-~~qQrLI~~ 65 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ-ENYIKIVIN 65 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC-STTCEEEET
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC-HHHeEEEeC
Confidence 4567788887 6 68899999999999999999999974 455555553
No 106
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=46.83 E-value=41 Score=19.58 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred CceEEEEEEec-----CCeEE-EEEccc-----------CchhhhHHHHhccc-CceeeeeeeEEEecCCCCeecccC
Q psy11813 2 NGLMNVRVTTM-----DAELE-FAIQHT-----------TTGKQLFDQTVKTI-GLREVWFFGLQYADSRGDLTWIKL 61 (70)
Q Consensus 2 ~~~~~~~V~lL-----D~~~~-~~v~~~-----------~~G~~L~d~Vc~~L-~L~E~dYFGL~y~d~~~~~~WLd~ 61 (70)
+..+++++.++ +.++. |.++.. .+=.+|.+.|-+-. +|.+. -|-+.|.|.+|....+--
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~-~f~l~Y~DedGDlItiSs 79 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPG-GFQAHYRAERGDLVAFSS 79 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS-CEEEEEECTTCCEEEECS
T ss_pred CceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCC-cEEEEEECCCCCEEEecC
Confidence 34678888887 23554 888642 13455555555553 34444 499999999888776543
No 107
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.47 E-value=37 Score=18.90 Aligned_cols=38 Identities=8% Similarity=-0.015 Sum_probs=31.0
Q ss_pred ceEEEEEEecCC-----eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-----ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-----~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..+.+ .+.+++++.++-.+|-.++.+..++.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip 48 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP 48 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC
Confidence 347888888642 56799999999999999999998864
No 108
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=42.04 E-value=55 Score=19.67 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=32.9
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
..+.+.|..++| ++.+.+++.++-.+|=.+|....++..
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 134 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 134 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc
Confidence 346777888888 788999999999999999999988753
No 109
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=41.88 E-value=5.4 Score=26.84 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=0.0
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE 41 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E 41 (70)
.|.++| -.|| ++.|.|.+.++=+-|++..|++.++.-
T Consensus 21 ~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~ 58 (227)
T 3v7o_A 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 58 (227)
T ss_dssp ---------------------------------------
T ss_pred eEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 478888 6687 788999999999999999999998753
No 110
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=41.40 E-value=32 Score=19.01 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=28.3
Q ss_pred EEEEEEecCC-eEEEEEc--ccCchhhhHHHH-hcccCc
Q psy11813 5 MNVRVTTMDA-ELEFAIQ--HTTTGKQLFDQT-VKTIGL 39 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~--~~~~G~~L~d~V-c~~L~L 39 (70)
|.+.|..+.+ ++.++++ +.++-.++=+++ .+.-|+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gi 40 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKAS 40 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCS
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCC
Confidence 6889999999 6776655 999999999999 665565
No 111
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=39.98 E-value=52 Score=18.72 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=41.2
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCee
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i 65 (70)
|.++.....--+ .+.|.|.++++=..|+..-|..-++.-..-+-|.|- -.||++...+
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD-----GdRLdp~~tp 66 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE-----GEWLDPNDQV 66 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET-----TEECCTTSBG
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc-----CcccCccCCh
Confidence 455555555555 689999999999999999999999876644555552 2356665544
No 112
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=38.97 E-value=33 Score=18.66 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=30.7
Q ss_pred ceEEEEEEecCC-eEEE-EEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-ELEF-AIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~-~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|.. .+ .+.+ ++++.++-.+|=.++.+..++.
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip 44 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 347788886 56 7788 9999999999999999998874
No 113
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=38.29 E-value=56 Score=18.68 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCceEEEEEEecCCeEEEEEc--ccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeec
Q psy11813 1 MNGLMNVRVTTMDAELEFAIQ--HTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTW 58 (70)
Q Consensus 1 ~~~~~~~~V~lLD~~~~~~v~--~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~W 58 (70)
|.-++..+|..=.....|.|+ ...+=.+|...|+...+|. -|=+.|.|.+|...=
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~ 59 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVS 59 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEE
T ss_pred CCceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEE
Confidence 455677888887777777774 4888999999999999996 458999998876543
No 114
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=37.61 E-value=60 Score=20.96 Aligned_cols=38 Identities=11% Similarity=-0.078 Sum_probs=28.3
Q ss_pred EEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCC
Q psy11813 16 LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSR 53 (70)
Q Consensus 16 ~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~ 53 (70)
+.+.+++.++=++|++.+|+.+++....-+=|.....+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~ 191 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMS 191 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCC
Confidence 34677999999999999999999965444555554433
No 115
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.24 E-value=64 Score=18.99 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCceEEEEEEecCCeEEEEEc--ccCchhhhHHHHhcccCceeeeeeeEEEecCCCCee
Q psy11813 1 MNGLMNVRVTTMDAELEFAIQ--HTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT 57 (70)
Q Consensus 1 ~~~~~~~~V~lLD~~~~~~v~--~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~ 57 (70)
|.-++..+|..=.....|.|+ ...+=.+|...|+...+|. -|=+.|.|.+|...
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V 66 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEV 66 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEE
T ss_pred cCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEE
Confidence 445677888887777777774 4888999999999999996 44899999887654
No 116
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=36.81 E-value=58 Score=19.23 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=33.6
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 48 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~ 48 (70)
...++|++-|| .+.-......+=++|++-|..++.-.+..-|-|.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~ 97 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLM 97 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEe
Confidence 45789999999 6777888888889999999887542223445554
No 117
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=35.58 E-value=7.8 Score=25.11 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=0.0
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
|.+.|..|++ ++.++|++..+=.+|=..|....++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP 37 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE 37 (189)
T ss_dssp -------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC
Confidence 5678889998 78899999888888888888877764
No 118
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.80 E-value=67 Score=18.25 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+...|.+-..++.+.+++.++..+|=.++++.-++.
T Consensus 10 ~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp 45 (100)
T 2dzm_A 10 LDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP 45 (100)
T ss_dssp EEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 445555533488899999999999999999999973
No 119
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=32.71 E-value=25 Score=19.44 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEEcccCchhhhHHHHhcccCceeeeeee
Q psy11813 17 EFAIQHTTTGKQLFDQTVKTIGLREVWFFG 46 (70)
Q Consensus 17 ~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFG 46 (70)
.++..+=.+-.++++.+.+.++++ +|||
T Consensus 5 ~id~~~i~~~~~~~~~l~~~l~~P--~~fG 32 (90)
T 2za4_B 5 VINGEQIRSISDLHQTLKKELALP--EYYG 32 (90)
T ss_dssp EEEGGGCCSHHHHHHHHHHHTTCC--TTCC
T ss_pred EEeCCCcCCHHHHHHHHHHHhCCC--cccC
Confidence 344455556788999999999986 8898
No 120
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.91 E-value=63 Score=17.30 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=28.1
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
++...+. +.+ .+++++++.++-.+|=.++.+..++.
T Consensus 12 ~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 48 (85)
T 2kd0_A 12 TIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVL 48 (85)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCC
T ss_pred cEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3444444 466 78899999999999999999988874
No 121
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.29 E-value=65 Score=17.32 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=30.0
Q ss_pred ceEEEEEEecCCe---EEEEEcccCchhhhHHHHhccc--Cc
Q psy11813 3 GLMNVRVTTMDAE---LEFAIQHTTTGKQLFDQTVKTI--GL 39 (70)
Q Consensus 3 ~~~~~~V~lLD~~---~~~~v~~~~~G~~L~d~Vc~~L--~L 39 (70)
..|.+.|..+.+. +++++++.++-.+|=.++.+.. ++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i 47 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERP 47 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCC
Confidence 3578999999873 5566779999999999999887 65
No 122
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=29.71 E-value=70 Score=17.15 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.4
Q ss_pred eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813 4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ 48 (70)
Q Consensus 4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~ 48 (70)
...++|.+.|| .+.-......+=++|++-|-.+ +. +..-|-|.
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~-~~-~~~~f~L~ 50 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GF-PWDEYKLL 50 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT-TC-CTTTEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc-CC-CCCCeEEE
Confidence 46789999999 6777777888899999998773 32 33445554
No 123
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=29.42 E-value=77 Score=17.58 Aligned_cols=39 Identities=5% Similarity=0.150 Sum_probs=30.7
Q ss_pred eEEEEEEe---cCCeEEEEEcccCchhhhHHHHhcccCceee
Q psy11813 4 LMNVRVTT---MDAELEFAIQHTTTGKQLFDQTVKTIGLREV 42 (70)
Q Consensus 4 ~~~~~V~l---LD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~ 42 (70)
-+.+++-+ -++++.+.++..-+-+.|.+.|.+.+++...
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~ 45 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMP 45 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSC
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcC
Confidence 34555555 3348899999999999999999999998653
No 124
>2l1a_A Formin-C, @; fruiting BODY formation, actin binding protein; NMR {Dictyostelium discoideum}
Probab=29.31 E-value=36 Score=19.76 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=12.8
Q ss_pred CCceEEEEEEecCC
Q psy11813 1 MNGLMNVRVTTMDA 14 (70)
Q Consensus 1 ~~~~~~~~V~lLD~ 14 (70)
|++.|.++|.++.|
T Consensus 4 mg~~mki~ve~~ng 17 (107)
T 2l1a_A 4 MGGSMKIRVELING 17 (107)
T ss_dssp CSSSEEEEEEECCC
T ss_pred cCCceEEEEEEecC
Confidence 78999999999987
No 125
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.93 E-value=77 Score=17.44 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=30.7
Q ss_pred ceEEEEEEecCC-eE-EEEEcccCchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDA-EL-EFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~-~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
..|+++|.. .+ .+ ++++++.++-.+|=.++.+..++.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip 44 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ 44 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 457888885 56 78 699999999999999999888863
No 126
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=28.69 E-value=93 Score=18.27 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=28.1
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~ 36 (70)
....++|++.|| .+.-......+=++|++-|-.+
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~ 76 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK 76 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc
Confidence 457899999999 6777777888888999999775
No 127
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.51 E-value=89 Score=18.03 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=41.3
Q ss_pred ceEEEEEEecCCeEE-EEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCee
Q psy11813 3 GLMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~-~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i 65 (70)
+++...|.+.-.+.. +.|.|+..=++|+..||+.=++.-..| =|. .......=||++|.+
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~-~Ll--~d~~~~e~LdLskSL 69 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHT-LLL--KDYQSQEPLDLTKSL 69 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSE-EEE--SCSSCCCBCCTTSCH
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhE-EEe--cCCCCCcccchhcch
Confidence 567788888888654 899999999999999999888632222 122 222223336777765
No 128
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=28.00 E-value=9.3 Score=25.01 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=17.6
Q ss_pred eeeeEEEecCCCCeecccCCC
Q psy11813 43 WFFGLQYADSRGDLTWIKLYK 63 (70)
Q Consensus 43 dYFGL~y~d~~~~~~WLd~~k 63 (70)
|.||+.|..+.+.++||.++.
T Consensus 120 DmfGI~F~GhPdlRRiLl~~~ 140 (207)
T 3i9v_5 120 DLFGIVFEGHPDLRKILTPED 140 (207)
T ss_dssp HTSCCBCTTCSCCCCCSSCTT
T ss_pred hhcCcEeCCCCCCccccCCCC
Confidence 689999999988888887653
No 129
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=27.76 E-value=86 Score=17.60 Aligned_cols=37 Identities=8% Similarity=0.115 Sum_probs=28.6
Q ss_pred ceEEEEEEecCC-eEEE--EEcccCchhhhHHHH-hcccCc
Q psy11813 3 GLMNVRVTTMDA-ELEF--AIQHTTTGKQLFDQT-VKTIGL 39 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~--~v~~~~~G~~L~d~V-c~~L~L 39 (70)
..|.+.|..+.| .+.+ .+++.++-.+|=+++ .+.-++
T Consensus 18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gi 58 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKAS 58 (98)
T ss_dssp CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCS
T ss_pred CCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCC
Confidence 568999999999 5555 666999999999998 444454
No 130
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens}
Probab=27.72 E-value=82 Score=17.33 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.7
Q ss_pred ceeeeeeeEEEecCCCCeecccC
Q psy11813 39 LREVWFFGLQYADSRGDLTWIKL 61 (70)
Q Consensus 39 L~E~dYFGL~y~d~~~~~~WLd~ 61 (70)
-...-..||......+...|.|.
T Consensus 60 ~~~~~WIGl~~~~~~~~w~W~dg 82 (132)
T 3vpp_A 60 GSYDYWVGLSQDGHSGRWLWQDG 82 (132)
T ss_dssp SCCEEEEEEEECTTTCCEEETTS
T ss_pred CCccEEEEecccCCCCceEecCC
Confidence 34455789999877888999884
No 131
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=27.69 E-value=94 Score=17.99 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEEEEecCC---eEEEEEcccCchhhhHHHHhcccCce---eeeeeeEEEe
Q psy11813 5 MNVRVTTMDA---ELEFAIQHTTTGKQLFDQTVKTIGLR---EVWFFGLQYA 50 (70)
Q Consensus 5 ~~~~V~lLD~---~~~~~v~~~~~G~~L~d~Vc~~L~L~---E~dYFGL~y~ 50 (70)
+.+.|.-+.+ .+.+++++.++-..|=+++.+..|+. .+.+||-+-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll 76 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLA 76 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEc
Confidence 3344445554 57799999999999999999999974 4778887754
No 132
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=26.12 E-value=36 Score=18.98 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=21.0
Q ss_pred EEEEcccCchhhhHHHHhcccCceeeeeee
Q psy11813 17 EFAIQHTTTGKQLFDQTVKTIGLREVWFFG 46 (70)
Q Consensus 17 ~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFG 46 (70)
.++...-.+-+++++.+.+.+++. +|||
T Consensus 5 ~iD~~~i~~~~~f~~~~~~~~~~p--~~fG 32 (90)
T 2cx6_A 5 TFDFDEIESQEDFYRDFSQTFGLA--KDKV 32 (90)
T ss_dssp EEETTSCCSHHHHHHHHHHHTTCC--TTSC
T ss_pred EEeCCCCCCHHHHHHHHHHHhCCc--hhhC
Confidence 344455566788999999999987 4888
No 133
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=25.84 E-value=4 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=17.6
Q ss_pred CchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813 24 TTGKQLFDQTVKTIGLREVWFFGLQYA 50 (70)
Q Consensus 24 ~~G~~L~d~Vc~~L~L~E~dYFGL~y~ 50 (70)
..|+.+.+.|+++|. ||||.|+
T Consensus 16 ~~GrLi~~LVrEyLe-----f~~l~~T 37 (82)
T 2d68_A 16 KDGRLVASLVAEFLQ-----FFNLDFT 37 (82)
T ss_dssp HHHHHHHHHHHHHHH-----HTTCHHH
T ss_pred cccHHHHHHHHHHHH-----HcCCcch
Confidence 359999999999986 7777664
No 134
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.97 E-value=25 Score=19.81 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.3
Q ss_pred EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813 5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~ 40 (70)
+.+.|.. .+ ++++.+++.++-.+|=.++.+..++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip 64 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP 64 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 4556665 56 67889999999999999999998874
No 135
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.04 E-value=91 Score=16.61 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.1
Q ss_pred ceEEEEEEecCCeEEEEEccc-----CchhhhHHHHhcccCce
Q psy11813 3 GLMNVRVTTMDAELEFAIQHT-----TTGKQLFDQTVKTIGLR 40 (70)
Q Consensus 3 ~~~~~~V~lLD~~~~~~v~~~-----~~G~~L~d~Vc~~L~L~ 40 (70)
..|.+.|..-...+++.+++. ++=.+|=.++.+..++.
T Consensus 6 ~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 6 SGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp SSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 458888888433788999885 88889999999888864
No 136
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=23.39 E-value=53 Score=20.27 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhccc
Q psy11813 1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTI 37 (70)
Q Consensus 1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L 37 (70)
|.+.+.+.|+...+.-.|-++....+.. |+.+.+.|
T Consensus 1 ~~~~~~V~Vt~v~~p~~f~vq~~~~~~~-l~~l~~~l 36 (218)
T 2wac_A 1 MVNYENVIVTEITETLTFFAQSVESGSK-LESLMSKL 36 (218)
T ss_dssp CCCCEEEEEEEECTTSEEEEEEGGGHHH-HHHHHHHH
T ss_pred CCceEEEEEEEEcCCCEEEEEECCCHHH-HHHHHHHH
Confidence 6788899999999865677766555543 45444444
No 137
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=23.23 E-value=1.1e+02 Score=17.48 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=39.0
Q ss_pred CCceEEEEEEecCC--eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC
Q psy11813 1 MNGLMNVRVTTMDA--ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS 52 (70)
Q Consensus 1 ~~~~~~~~V~lLD~--~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~ 52 (70)
|...+.+.|+.-.. ..++.+++.++=.+|=.++....|+. .+.--|.|.+.
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip-~~~qrL~~~g~ 55 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT-VDSMRIQLFDG 55 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC-TTTEEEEEECS
T ss_pred CCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC-HHHeEEEEecC
Confidence 55667788876544 47899999999999999999999875 44556777653
No 138
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=23.13 E-value=57 Score=22.80 Aligned_cols=31 Identities=10% Similarity=0.330 Sum_probs=24.2
Q ss_pred HHHHhcccCceeeeeeeEEEecCCCCeecccCC
Q psy11813 30 FDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY 62 (70)
Q Consensus 30 ~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~ 62 (70)
-..|.+.|++.+ + +-+.|++.-|..-||.|.
T Consensus 220 ~~lv~e~Lg~~~-~-~~l~~QSr~G~~~WL~P~ 250 (359)
T 3hcn_A 220 VQKVMERLEYCN-P-YRLVWQSKVGPMPWLGPQ 250 (359)
T ss_dssp HHHHHHHTTTCS-C-EEEEEECCSCSSCBSSSB
T ss_pred HHHHHHHcCCCC-C-EEEEEEcCCCCCCCCCCC
Confidence 467888898863 2 479999887888999875
No 139
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=22.56 E-value=1.2e+02 Score=17.25 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=26.6
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~ 36 (70)
....++|++-|| .+.-......+=++|++-|-.+
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~ 56 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV 56 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc
Confidence 357899999999 6666666777778999988754
No 140
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=21.34 E-value=1.2e+02 Score=16.98 Aligned_cols=35 Identities=6% Similarity=-0.059 Sum_probs=28.8
Q ss_pred ceEEEEEEecCCe---EEEEEcccCchhhhHHHHhccc
Q psy11813 3 GLMNVRVTTMDAE---LEFAIQHTTTGKQLFDQTVKTI 37 (70)
Q Consensus 3 ~~~~~~V~lLD~~---~~~~v~~~~~G~~L~d~Vc~~L 37 (70)
..|.+.|..+++. +.+++++.++-.+|=.++.+.+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~ 59 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY 59 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh
Confidence 4588999999873 5788899999999989998865
No 141
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=21.23 E-value=87 Score=21.95 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=29.9
Q ss_pred ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813 3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~ 36 (70)
..|.+.|..+.+ ++.+.|++..+-.+|=.+|...
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~ 40 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAE 40 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHH
Confidence 458899999998 7889999999999999999984
No 142
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.22 E-value=1.4e+02 Score=17.79 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=28.1
Q ss_pred eEEEEEEecCC-eE-EEEEcccCchhhhHHHHhcc
Q psy11813 4 LMNVRVTTMDA-EL-EFAIQHTTTGKQLFDQTVKT 36 (70)
Q Consensus 4 ~~~~~V~lLD~-~~-~~~v~~~~~G~~L~d~Vc~~ 36 (70)
.+.++|.+++| .+ .+.+++.++-..|=+.|...
T Consensus 16 ~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~ 50 (126)
T 1se9_A 16 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISE 50 (126)
T ss_dssp CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHH
T ss_pred cEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhh
Confidence 58899999999 77 59999999998888888543
No 143
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=20.28 E-value=99 Score=15.60 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=18.0
Q ss_pred EEEEEEecCCeEEEEEcccCchhhhHHHH
Q psy11813 5 MNVRVTTMDAELEFAIQHTTTGKQLFDQT 33 (70)
Q Consensus 5 ~~~~V~lLD~~~~~~v~~~~~G~~L~d~V 33 (70)
|.+.|.+-||+. ..++..++..++...+
T Consensus 1 m~i~i~~p~g~~-~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 1 MEVMVFTPKGEI-KRLPQGATALDFAYSL 28 (73)
T ss_dssp CCEEEECTTCCE-EEECTTCBHHHHHHHH
T ss_pred CeEEEEcCCCCE-EEcCCCCcHHHHHHHH
Confidence 345677778742 4566777777776665
Done!