RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11813
(70 letters)
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein;
1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4
PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A
2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 77.7 bits (191), Expect = 2e-19
Identities = 49/62 (79%), Positives = 54/62 (87%)
Query: 5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
++VRVTTMDAELEFAIQ TTGKQLFDQ VKTIGLREVWFFGLQY D++G TW+KL KK
Sbjct: 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61
Query: 65 VR 66
V
Sbjct: 62 VT 63
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER
actin binding, masking, regulation, SELF-inhibition,
cell A membrane protein; 2.10A {Spodoptera frugiperda}
PDB: 2i1k_A 1e5w_A
Length = 575
Score = 78.0 bits (191), Expect = 4e-19
Identities = 57/62 (91%), Positives = 58/62 (93%)
Query: 5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 5 MNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 64
Query: 65 VR 66
V
Sbjct: 65 VM 66
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural
genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A
3bin_A 2he7_A 2rq1_A
Length = 296
Score = 71.1 bits (174), Expect = 6e-17
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 5 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
+ +V+ +D E ++ G+ L + + + L E +FGL D+ TW+ K
Sbjct: 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 77
Query: 64 KVR 66
+++
Sbjct: 78 EIK 80
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 68.9 bits (168), Expect = 5e-16
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
VR+ TMDAE+EF + GK LFD +T+GLRE WFFGLQY + + W+K+ K
Sbjct: 22 TFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDK 80
Query: 64 KVR 66
KV
Sbjct: 81 KVL 83
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 59.1 bits (143), Expect = 2e-12
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 5 MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD----LTWI 59
+++ +D + + T + IG+ + L L W+
Sbjct: 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWL 145
Query: 60 KLYKKVR 66
+ +R
Sbjct: 146 DHGRTLR 152
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 45.7 bits (107), Expect = 1e-07
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 5 MNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
M V + I TT ++ ++ ++ + + + + + I+
Sbjct: 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRT 276
Query: 64 KV 65
V
Sbjct: 277 VV 278
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 45.3 bits (106), Expect = 2e-07
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 5 MNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
+ + VT MD + TT ++L + I L++ + F L A +
Sbjct: 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSD 323
Query: 64 KV 65
V
Sbjct: 324 HV 325
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 44.2 bits (104), Expect = 4e-07
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 18/78 (23%)
Query: 4 LMNVRVTTMDA---ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT--- 57
VR+ MD +E + TT +Q+ + ++ + +F + L
Sbjct: 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQIMEG-MR-LSQETQQYFTIWICSENLSLQLKP 62
Query: 58 ----------WIKLYKKV 65
W ++ ++
Sbjct: 63 YHKPLQHVRDWPEILAEL 80
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 24.4 bits (52), Expect = 2.9
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 27 KQLFDQTVKTIGLRE----VWFFGLQYADSRGDLTWIKLYKKV 65
+ +D+ K GL WF +YA G+L W Y+
Sbjct: 52 PEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSA 94
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate,
center for STR genomics of infectious diseases, csgid;
HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Length = 195
Score = 23.3 bits (50), Expect = 8.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 10 TTMDAELEFAIQHTTTGKQLFDQTVKTIGL 39
D E+EF +Q TGK F +K +
Sbjct: 145 NHDDYEIEFEVQDEETGKAAFIHLLKQHNI 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.424
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,032,112
Number of extensions: 44443
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 11
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)