RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11813
         (70 letters)



>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 84

 Score = 80.5 bits (199), Expect = 8e-23
 Identities = 49/62 (79%), Positives = 54/62 (87%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          ++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+KL KK
Sbjct: 2  ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61

Query: 65 VR 66
          V 
Sbjct: 62 VT 63


>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 84

 Score = 75.9 bits (187), Expect = 5e-21
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 4  LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
             VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ K
Sbjct: 2  TFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDK 60

Query: 64 KVR 66
          KV 
Sbjct: 61 KVL 63


>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 67.5 bits (165), Expect = 1e-17
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 5  MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
          M+ +V+ +D    E  ++    G+ L  +  + + L E  +FGL   D+    TW+   K
Sbjct: 1  MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 60

Query: 64 KVR 66
          +++
Sbjct: 61 EIK 63


>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
          (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
          Length = 79

 Score = 24.0 bits (52), Expect = 1.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQ 32
          +N++V+   +E+ F I+ TT  ++L + 
Sbjct: 5  INLKVSDGSSEIFFKIKKTTPLRRLMEA 32


>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca
          [TaxId: 2021]}
          Length = 302

 Score = 24.1 bits (51), Expect = 1.7
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 24 TTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
              +L++   +   +R V      Y         IK
Sbjct: 6  VKNGRLYEANGQEFIIRGVSHPHNWYPQHTQAFADIK 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,830
Number of extensions: 8619
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 7
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)