BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11815
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 71 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDP----DQRISYKISAGN 126
++VQ++NDN P L +Y+A + E + ++Q+ ASD D DP ++ Y I G
Sbjct: 95 VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDAD-DPTYGNSAKLVYSILEGQ 153
Query: 127 PESYFNIDIGSG 138
P YF+++ +G
Sbjct: 154 P--YFSVEAQTG 163
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 3 LDPVYYAQIVENQSGILPIVQLAASDGDLDP----DQRISYKISAGNPESYFNID 53
L +Y+A + E + ++Q+ ASD D DP ++ Y I G P YF+++
Sbjct: 108 LHEIYHANVPERSNVGTSVIQVTASDAD-DPTYGNSAKLVYSILEGQP--YFSVE 159
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 71 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGD--LDPDQRISYKISAGNPE 128
I V +VNDN P +Y ++ EN+ ++ + L +D D P +Y+IS G+P
Sbjct: 211 ITVTDVNDNPPEFTAMTFYGEVPENRVDVI-VANLTVTDKDQPHTPAWNAAYRISGGDPT 269
Query: 129 SYFNI 133
F I
Sbjct: 270 GRFAI 274
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 77 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP--ESYFNID 134
NDN P VY A + EN + PI+QL A+D D+ + +I Y A +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 135 IGSGSL 140
SG L
Sbjct: 68 ETSGWL 73
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 6 VYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAG 44
VY A + EN + PI+QL A+D D+ + +I Y A
Sbjct: 18 VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAA 56
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 59 TGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDP---- 114
TG P + I++ ++NDN P+ VY A + E +VQ+ A+D D DP
Sbjct: 82 TGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDAD-DPTYGN 140
Query: 115 DQRISYKISAGNPESYFNIDIGSG 138
++ Y I G P YF+++ +G
Sbjct: 141 SAKVVYSILQGQP--YFSVESETG 162
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 69 VYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE 128
V IQV +VNDN P + Y +I EN PI + A+D DL + Y +P
Sbjct: 96 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP- 154
Query: 129 SYFNIDIGSG 138
+F ID G
Sbjct: 155 -FFAIDSARG 163
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 69 VYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE 128
V IQV +VNDN P + Y +I EN PI + A+D DL + Y +P
Sbjct: 96 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP- 154
Query: 129 SYFNIDIGSG 138
+F ID G
Sbjct: 155 -FFAIDSARG 163
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSDLTGGPDQVYLIVY 70
I+E +S I ++ DGD+ +R+ + A + ID ++ + P ++I
Sbjct: 36 IIEGESA-NTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFII-- 92
Query: 71 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDP----DQRISYKISAGN 126
+V ++NDN P+ + ++ + E + ++ A D D DP ++Y+I GN
Sbjct: 93 -KVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD-DPTVAGHATVTYQIIKGN 150
Query: 127 PESYFNID 134
YF +D
Sbjct: 151 --EYFTVD 156
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 69 VYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE 128
V IQV +VNDN P + Y +I EN PI + A+D DL + Y +P
Sbjct: 95 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP- 153
Query: 129 SYFNIDIGSG 138
+F ID G
Sbjct: 154 -FFAIDSARG 162
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 55 GSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIV-ENQSGILPIVQLAASDGDL- 112
+DL G V IQ+ + NDN P+ DP Y +V EN+ G + +L+ +D D+
Sbjct: 348 ATDLEGAGLSVEGKAIIQITDANDNAPI-FDPKTYTALVPENEIG-FEVQRLSVTDLDMP 405
Query: 113 -DPDQRISYKISAGNPESYFNI 133
P + YKI N +FNI
Sbjct: 406 GTPAWQAVYKIRV-NEGGFFNI 426
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 71 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDP----DQRISYKISAGN 126
I+VQ++NDN P L+ Y+A + E + + A+D D DP ++ Y I G
Sbjct: 94 IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDAD-DPVYGNSAKLVYSILEGQ 152
Query: 127 PESYFNID 134
P YF+I+
Sbjct: 153 P--YFSIE 158
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 69 VYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE 128
V IQV VNDN P + Y +I EN PI + A+D DL + Y P
Sbjct: 96 VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP--PS 153
Query: 129 SYFNIDIGSG 138
+F ID G
Sbjct: 154 PFFAIDSARG 163
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 55 GSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIV-ENQSGILPIVQLAASDGDL- 112
+DL G V IQ+ + NDN P+ DP Y +V EN+ G + +L+ +D D+
Sbjct: 199 ATDLEGAGLSVEGKAIIQITDANDNAPI-FDPKTYTALVPENEIG-FEVQRLSVTDLDMP 256
Query: 113 -DPDQRISYKISAGNPESYFNI 133
P + YKI N +FNI
Sbjct: 257 GTPAWQAVYKIRV-NEGGFFNI 277
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 78 DNVPMTLDPVYYAQIVENQSGILPIVQLAAS 108
D+VP + YYA+IVE +S + +++ A S
Sbjct: 94 DSVPTAANVEYYARIVEEKSLLRRLIRTATS 124
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 69 VYIQVQNVNDNVPMTLDPVYYAQIVENQSGILP---IVQLAASDGDLDPDQ---RISYKI 122
+ I V + NDN P V+ ++E G LP ++++ A+D D D + I+Y I
Sbjct: 94 ILITVTDQNDNKPEFTQEVFKGSVME---GALPGTSVMEVTATDADDDVNTYNAAIAYTI 150
Query: 123 SAGNPE----SYFNIDIGSG 138
+ +PE + F I+ +G
Sbjct: 151 LSQDPELPDKNMFTINRNTG 170
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 78 DNVPMTLDPVYYAQIVENQSGILPIVQLAAS 108
D VP + YYA+IVE +S + +++ A S
Sbjct: 94 DAVPTAANVEYYARIVEEKSVLRRLIRTATS 124
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 60/158 (37%), Gaps = 35/158 (22%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSDLTG--- 60
P Y A+I ENQ I+ + A D+ I Y + A G FNI S +
Sbjct: 222 PSYEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAK 278
Query: 61 --------GPDQVYLIVY---------------IQVQNVNDNVPMTLDPVYYAQIVENQS 97
P LIV I+V +VNDN P P Y A V+
Sbjct: 279 ELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDI 338
Query: 98 GI-LPIVQLAASDGDLDPDQRISYKISAGNPESYFNID 134
+ I+++ A D D + I Y +S + +F +D
Sbjct: 339 PLGTSILRVKAMDSDSGSNAEIEYLVS----DDHFAVD 372
>pdb|3MZO|A Chain A, Crystal Structure Of A Hd-Domain Phosphohydrolase
(Lin2634) Listeria Innocua At 1.98 A Resolution
pdb|3MZO|B Chain B, Crystal Structure Of A Hd-Domain Phosphohydrolase
(Lin2634) Listeria Innocua At 1.98 A Resolution
pdb|3MZO|C Chain C, Crystal Structure Of A Hd-Domain Phosphohydrolase
(Lin2634) Listeria Innocua At 1.98 A Resolution
Length = 216
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 76 VNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDI 135
++ +P T P+Y + E + L LA SD +D +I GNPE+ F ++I
Sbjct: 105 ISREIPATFQPIYRHLLKEGKDSTLEGKILAISD-KVDLLYESFGEIQKGNPENIF-VEI 162
Query: 136 GSGSLG 141
S +L
Sbjct: 163 YSEALA 168
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 25.4 bits (54), Expect = 9.8, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYF 50
I+E G LPI A +G + P + + + +PE Y+
Sbjct: 104 ILEKYDGHLPIEVKAVPEGSVIPRGNVLFTVENTDPECYW 143
Score = 25.4 bits (54), Expect = 9.8, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYF 131
I+E G LPI A +G + P + + + +PE Y+
Sbjct: 104 ILEKYDGHLPIEVKAVPEGSVIPRGNVLFTVENTDPECYW 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,654,646
Number of Sequences: 62578
Number of extensions: 192285
Number of successful extensions: 268
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 54
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)