Query psy11815
Match_columns 141
No_of_seqs 205 out of 1137
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 19:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4289|consensus 100.0 7.9E-32 1.7E-36 220.1 13.4 140 1-140 268-431 (2531)
2 KOG4289|consensus 100.0 9E-30 2E-34 208.2 12.9 140 1-140 782-946 (2531)
3 cd00031 CA Cadherin repeat dom 100.0 6.9E-28 1.5E-32 167.5 20.2 136 6-141 1-160 (199)
4 KOG1219|consensus 99.9 1.4E-26 3E-31 194.8 16.8 137 5-141 956-1116(4289)
5 KOG1219|consensus 99.9 4.1E-25 8.9E-30 186.1 17.8 137 1-141 2470-2736(4289)
6 PF00028 Cadherin: Cadherin do 99.6 6.3E-15 1.4E-19 91.0 10.8 68 7-74 1-93 (93)
7 KOG1834|consensus 99.6 1E-13 2.2E-18 108.5 13.0 133 4-140 34-204 (952)
8 smart00112 CA Cadherin repeats 99.4 2.3E-12 5E-17 77.1 8.3 55 27-81 1-79 (79)
9 PF00028 Cadherin: Cadherin do 99.4 3.4E-12 7.4E-17 78.7 7.7 54 88-141 1-54 (93)
10 cd00031 CA Cadherin repeat dom 99.2 7.6E-10 1.7E-14 76.7 12.0 74 2-75 102-199 (199)
11 smart00112 CA Cadherin repeats 97.9 2.3E-05 5.1E-10 46.4 3.8 33 108-140 1-33 (79)
12 KOG1834|consensus 97.4 0.0009 2E-08 53.9 8.2 74 2-76 149-245 (952)
13 PF08266 Cadherin_2: Cadherin- 96.6 0.00096 2.1E-08 40.3 1.2 53 88-141 3-57 (84)
14 PF08758 Cadherin_pro: Cadheri 96.4 0.021 4.5E-07 35.0 6.0 58 2-61 6-81 (90)
15 TIGR00845 caca sodium/calcium 95.1 1.1 2.4E-05 38.4 13.0 29 67-96 515-543 (928)
16 smart00736 CADG Dystroglycan-t 94.8 0.52 1.1E-05 28.9 8.4 30 47-78 67-96 (97)
17 PF08758 Cadherin_pro: Cadheri 94.6 0.077 1.7E-06 32.4 4.0 54 80-140 3-56 (90)
18 PF07495 Y_Y_Y: Y_Y_Y domain; 92.3 0.78 1.7E-05 25.7 5.5 37 36-74 30-66 (66)
19 TIGR01965 VCBS_repeat VCBS rep 88.2 3.7 8E-05 25.6 6.2 54 34-95 34-97 (99)
20 TIGR03660 T1SS_rpt_143 T1SS-14 80.0 15 0.00031 24.3 8.8 68 17-95 53-127 (137)
21 PF13750 Big_3_3: Bacterial Ig 66.2 37 0.00081 22.8 9.0 26 47-74 123-148 (158)
22 PF12245 Big_3_2: Bacterial Ig 64.5 22 0.00048 19.6 5.6 28 47-76 23-50 (60)
23 PF03160 Calx-beta: Calx-beta 64.3 29 0.00063 20.9 5.4 52 70-125 2-53 (100)
24 KOG3597|consensus 62.2 21 0.00045 28.4 4.9 59 65-124 24-82 (442)
25 PF03413 PepSY: Peptidase prop 59.5 13 0.00029 20.1 2.7 26 115-140 29-60 (64)
26 PF07861 WND: WisP family N-Te 57.9 33 0.00071 24.1 4.8 26 114-141 201-226 (263)
27 PF02494 HYR: HYR domain; Int 52.7 44 0.00096 19.3 4.5 25 47-73 57-81 (81)
28 PF05345 He_PIG: Putative Ig d 48.2 23 0.00049 18.8 2.3 13 129-141 14-26 (49)
29 PF13750 Big_3_3: Bacterial Ig 46.9 87 0.0019 21.0 11.5 24 37-60 5-29 (158)
30 cd02848 Chitinase_N_term Chiti 46.5 74 0.0016 20.1 6.1 36 35-74 70-105 (106)
31 COG3212 Predicted membrane pro 42.0 38 0.00082 22.5 3.1 36 104-140 99-137 (144)
32 PF13754 Big_3_4: Bacterial Ig 40.6 60 0.0013 17.4 5.2 27 35-61 12-38 (54)
33 PF08329 ChitinaseA_N: Chitina 40.0 72 0.0016 21.0 4.1 46 47-98 83-128 (133)
34 PF09100 Qn_am_d_aIV: Quinohem 37.3 1.2E+02 0.0026 19.9 4.6 34 47-81 98-132 (133)
35 COG2706 3-carboxymuconate cycl 37.2 1.5E+02 0.0033 22.8 5.9 25 116-140 255-280 (346)
36 PF12461 DUF3688: Protein of u 35.2 44 0.00095 20.4 2.4 24 118-141 62-85 (91)
37 PF01011 PQQ: PQQ enzyme repea 35.0 34 0.00074 16.7 1.6 12 129-140 11-22 (38)
38 TIGR03786 strep_pil_rpt strept 34.0 91 0.002 17.6 5.7 17 47-63 31-47 (64)
39 PF15418 DUF4625: Domain of un 32.3 1.5E+02 0.0032 19.4 8.3 25 47-73 107-131 (132)
40 cd07816 Bet_v1-like Ligand-bin 28.9 1.7E+02 0.0037 19.1 10.6 54 20-78 64-122 (148)
41 PF05688 DUF824: Salmonella re 27.7 94 0.002 16.5 2.6 16 65-80 13-28 (47)
42 PF10633 NPCBM_assoc: NPCBM-as 26.4 1.1E+02 0.0023 17.5 3.0 14 7-20 56-69 (78)
43 PF00635 Motile_Sperm: MSP (Ma 24.8 1.6E+02 0.0034 17.7 3.8 25 115-140 31-55 (109)
44 cd00146 PKD polycystic kidney 24.2 1.5E+02 0.0032 16.8 8.0 24 47-72 57-80 (81)
45 smart00564 PQQ beta-propeller 22.6 89 0.0019 14.1 1.8 12 129-140 17-28 (33)
46 PF00407 Bet_v_1: Pathogenesis 22.0 2.5E+02 0.0054 18.6 9.8 55 22-81 70-128 (151)
47 cd04046 C2_Calpain C2 domain p 21.9 2.2E+02 0.0047 17.9 5.5 9 68-76 64-72 (126)
48 PRK12634 flgD flagellar basal 21.2 3.2E+02 0.0069 19.6 7.5 10 48-57 167-176 (221)
49 smart00089 PKD Repeats in poly 20.1 1.8E+02 0.0039 16.3 8.2 24 47-73 55-78 (79)
No 1
>KOG4289|consensus
Probab=99.98 E-value=7.9e-32 Score=220.05 Aligned_cols=140 Identities=29% Similarity=0.401 Sum_probs=135.5
Q ss_pred CCCCCeeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC------------------------CeEEEEEEEE
Q psy11815 1 MTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP------------------------ESYFNIDIGS 56 (141)
Q Consensus 1 ~f~~~~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~------------------------~~y~l~v~a~ 56 (141)
.|.|..|..++.||.++|+.|.+|+|+|.|.++|+.|+|++.+|+. ..|+|.|+|+
T Consensus 268 vFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAs 347 (2531)
T KOG4289|consen 268 VFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRAPLDREELESYQLDVEAS 347 (2531)
T ss_pred ccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCccceeeccCccCHHhhhheEEEEEec
Confidence 4899999999999999999999999999999999999999999965 8999999999
Q ss_pred ECCCCCCeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcCCCCCcEEEeCC
Q psy11815 57 DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIG 136 (141)
Q Consensus 57 d~~~~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~~~~~~F~Id~~ 136 (141)
|+|.++...++.|.|+|.|+|||+|+|....|.+.|.|+..+++.|++|+|+|+|.|.|+.+.|+|.+|+..+.|.||..
T Consensus 348 DqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~ 427 (2531)
T KOG4289|consen 348 DQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSL 427 (2531)
T ss_pred cCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecc
Confidence 99998877899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEE
Q psy11815 137 SGSL 140 (141)
Q Consensus 137 tG~i 140 (141)
||+|
T Consensus 428 tGel 431 (2531)
T KOG4289|consen 428 TGEL 431 (2531)
T ss_pred cceE
Confidence 9987
No 2
>KOG4289|consensus
Probab=99.97 E-value=9e-30 Score=208.16 Aligned_cols=140 Identities=27% Similarity=0.381 Sum_probs=134.2
Q ss_pred CCCCCeeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC-------------------------CeEEEEEEE
Q psy11815 1 MTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP-------------------------ESYFNIDIG 55 (141)
Q Consensus 1 ~f~~~~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~-------------------------~~y~l~v~a 55 (141)
+|....|+++|.|++|++|.|++|.|+|+|.++|+++.|.+.++.+ ..|.|.+.|
T Consensus 782 qf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~F~IEptSGviRtl~rLdRE~~avy~L~a~a 861 (2531)
T KOG4289|consen 782 QFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGDFYIEPTSGVIRTLRRLDRENVAVYVLAAYA 861 (2531)
T ss_pred ccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCCCCceEEccCcceeehhhhhcchheeEEEEEEEE
Confidence 5888999999999999999999999999999999999999988765 899999999
Q ss_pred EECCCCCCeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcCCCCCcEEEeC
Q psy11815 56 SDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDI 135 (141)
Q Consensus 56 ~d~~~~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~~~~~~F~Id~ 135 (141)
.|.|.|++++.+.|+|+|+|+|||||+|.+..|.+.|.|+.+.|+.++++.|.|+|.|+|..|.|+|.+|+....|.++.
T Consensus 862 vDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdEG~NA~IsYqIvgg~d~~~fq~de 941 (2531)
T KOG4289|consen 862 VDRGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVALITADDPDEGPNAHISYQIVGGNDPELFQLDE 941 (2531)
T ss_pred eeCCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecCccceeeEEEEccCCCcCCcceEEEeeccCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999998
Q ss_pred CCeEE
Q psy11815 136 GSGSL 140 (141)
Q Consensus 136 ~tG~i 140 (141)
..|+|
T Consensus 942 ~~~~l 946 (2531)
T KOG4289|consen 942 FSGEL 946 (2531)
T ss_pred hhhhh
Confidence 88865
No 3
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.96 E-value=6.9e-28 Score=167.52 Aligned_cols=136 Identities=28% Similarity=0.387 Sum_probs=126.3
Q ss_pred eeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC------------------------CeEEEEEEEEECCCC
Q psy11815 6 VYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP------------------------ESYFNIDIGSDLTGG 61 (141)
Q Consensus 6 ~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~------------------------~~y~l~v~a~d~~~~ 61 (141)
.|.+.|.||+++|+.|+++.|.|+|.+.|+.+.|+|.++.. ..|.|.|.|+|.+.+
T Consensus 1 ~~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~ 80 (199)
T cd00031 1 SYSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGP 80 (199)
T ss_pred CeEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcC
Confidence 48899999999999999999999999888999999988763 799999999998888
Q ss_pred CCeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcCCCCCcEEEeCCCeEEC
Q psy11815 62 PDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSLG 141 (141)
Q Consensus 62 ~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~~~~~~F~Id~~tG~i~ 141 (141)
.++....+.|.|.|+|||+|.|....|.+.+.|+.++|+.++++.|+|+|.+.++.++|+|..+....+|.|++.+|.|.
T Consensus 81 ~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~ 160 (199)
T cd00031 81 PLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGIIT 160 (199)
T ss_pred cceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEEE
Confidence 77799999999999999999999999999999999999999999999999988999999999876557999999999873
No 4
>KOG1219|consensus
Probab=99.95 E-value=1.4e-26 Score=194.80 Aligned_cols=137 Identities=36% Similarity=0.531 Sum_probs=131.2
Q ss_pred CeeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC------------------------CeEEEEEEEEECCC
Q psy11815 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP------------------------ESYFNIDIGSDLTG 60 (141)
Q Consensus 5 ~~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~------------------------~~y~l~v~a~d~~~ 60 (141)
-.-+++|.||+|.|+.|+++.|.|.|.|..+.+.|+|..|+. ..|-|+|.|+|.|.
T Consensus 956 ~v~e~~V~EnapiGT~vi~i~A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt 1035 (4289)
T KOG1219|consen 956 FVTEGHVLENAPIGTIVIRIQARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGT 1035 (4289)
T ss_pred eeeeeeEeecCCcceEEEEEEEecCCCCccceEEEEEEcCCcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCC
Confidence 345789999999999999999999999999999999999876 89999999999999
Q ss_pred CCCeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcCCCCCcEEEeCCCeEE
Q psy11815 61 GPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140 (141)
Q Consensus 61 ~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~~~~~~F~Id~~tG~i 140 (141)
+++++.+.+.|.|+|+|||+|+|.++.|..+|.|+++.+..|.++.|.|+|...|+.+.|.|.+|+++++|.||+.||.|
T Consensus 1036 ~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sGnyq~FF~Id~~TG~i 1115 (4289)
T KOG1219|consen 1036 VPLSSVCEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSIVQAEANDPDSSSNQKLMYKITSGNYQGFFQIDPETGLI 1115 (4289)
T ss_pred CccccceeEEEEEEecCCCCcccCCceEeeeeccCCCCceEEEEeccCCCCcccCcceEEEEccCCccceEEEcccccee
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999988
Q ss_pred C
Q psy11815 141 G 141 (141)
Q Consensus 141 ~ 141 (141)
+
T Consensus 1116 T 1116 (4289)
T KOG1219|consen 1116 T 1116 (4289)
T ss_pred e
Confidence 5
No 5
>KOG1219|consensus
Probab=99.94 E-value=4.1e-25 Score=186.12 Aligned_cols=137 Identities=27% Similarity=0.303 Sum_probs=127.2
Q ss_pred CCCCCeeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC----------------------------------
Q psy11815 1 MTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP---------------------------------- 46 (141)
Q Consensus 1 ~f~~~~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~---------------------------------- 46 (141)
+|.+..|.++|.||+..|+.|+++.|+|+|++.|..++|.|.++..
T Consensus 2470 qF~a~~Y~~nI~enaskg~~V~~v~A~D~De~snadvty~i~~e~~~~~v~~in~sG~Itv~~sL~~~en~tl~l~vkA~ 2549 (4289)
T KOG1219|consen 2470 QFDAQLYRVNITENASKGKLVGHVIARDADEGSNADVTYEIVGESDVKHVFEINESGVITVKRSLDGLENSTLHLFVKAI 2549 (4289)
T ss_pred cccceeEEEEeecccCCCceEEEEEEecCCCCCcccEEEEecCchhhhheeeecCCceEEeehhhhcccCcEEEEEEEec
Confidence 4788899999999999999999999999999999999999988743
Q ss_pred --------------------------------------------------------------------------------
Q psy11815 47 -------------------------------------------------------------------------------- 46 (141)
Q Consensus 47 -------------------------------------------------------------------------------- 46 (141)
T Consensus 2550 D~g~P~~~s~ttV~v~vl~e~v~lPrFSep~y~fsvpEDv~vG~~Ig~v~a~~a~~~~i~~~v~~gt~Esn~d~~Fsvdr 2629 (4289)
T KOG1219|consen 2550 DDGKPRRRSNTTVIVTVLPEDVNLPRFSEPIYTFSVPEDVPVGEEIGQVSASDADEHVIYSLVLGGTPESNPDLPFSVDR 2629 (4289)
T ss_pred cCCCCCcccceEEEEEecCcccCcccccCceEEEeccccCCCCCeeeEEeecccCCceEEEEEeCCCCCCCCCCceEEcC
Confidence
Q ss_pred ----------------CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEEC
Q psy11815 47 ----------------ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDG 110 (141)
Q Consensus 47 ----------------~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~ 110 (141)
++|++.|.|.+.+. .-+...|.|.|.|+|||+|.|..++|.+.+.||.+.|+.|+++.|.|.
T Consensus 2630 ~TG~i~v~ksLD~E~kk~yqi~v~a~~~~~--vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~pvGtsV~qf~AsD~ 2707 (4289)
T KOG1219|consen 2630 NTGMIKVNKSLDHEKKKSYQIKVKATCGQW--VVAETSVFVQVKDVNDNAPVFEKDPYLFIIEENSPVGTSVIQFHASDM 2707 (4289)
T ss_pred CCceEEeccccchhhhceEEEEEEeecCCc--eEEEEEEEEEeecccCCCccccCCceeEEEeccCCCCceEEEEEeecc
Confidence 89999999999876 567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEcCCCCCcEEEeCCCeEEC
Q psy11815 111 DLDPDQRISYKISAGNPESYFNIDIGSGSLG 141 (141)
Q Consensus 111 D~~~~~~i~Y~i~~~~~~~~F~Id~~tG~i~ 141 (141)
|.+.||+|+|++....+ +|.|++.||.|+
T Consensus 2708 Ds~~nGqirysl~~~v~--yF~In~etGwlT 2736 (4289)
T KOG1219|consen 2708 DSGNNGQIRYSLTSPVP--YFAINPETGWLT 2736 (4289)
T ss_pred CCCCCceEEEEEcCCcc--eEEEcCCCCeee
Confidence 99999999999987755 999999999985
No 6
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.64 E-value=6.3e-15 Score=90.99 Aligned_cols=68 Identities=31% Similarity=0.352 Sum_probs=64.4
Q ss_pred eEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC------------------------CeEEEEEEEEEC-CCC
Q psy11815 7 YYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP------------------------ESYFNIDIGSDL-TGG 61 (141)
Q Consensus 7 y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~------------------------~~y~l~v~a~d~-~~~ 61 (141)
|+++|+|++++|+.|+++.|.|+|.+.|+.+.|+|.+++. ..|.|.|.|+|. +.|
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~ 80 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSP 80 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSS
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCC
Confidence 8999999999999999999999999999999999999883 899999999999 788
Q ss_pred CCeEEEEEEEEEE
Q psy11815 62 PDQVYLIVYIQVQ 74 (141)
Q Consensus 62 ~~~~~~~v~i~V~ 74 (141)
+++++++|.|+|+
T Consensus 81 ~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 81 PLSSTATVTINVL 93 (93)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC
Confidence 9999999999985
No 7
>KOG1834|consensus
Probab=99.56 E-value=1e-13 Score=108.55 Aligned_cols=133 Identities=27% Similarity=0.374 Sum_probs=104.8
Q ss_pred CCeeEEEEecCCCCCceeEEEEeEECCCC--CCCe-EEEEEecCCC---------------------------CeEEEEE
Q psy11815 4 DPVYYAQIVENQSGILPIVQLAASDGDLD--PDQR-ISYKISAGNP---------------------------ESYFNID 53 (141)
Q Consensus 4 ~~~y~~~V~E~~~~g~~v~~v~a~D~D~~--~n~~-v~y~i~~~~~---------------------------~~y~l~v 53 (141)
.+.|.+-|.||-..=...-.+.|.|+|.+ -.|. .-|.|.+..- +.|+|+|
T Consensus 34 e~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~vPFdavVvdK~TGegvlRaK~~lDCelqkeytf~i 113 (952)
T KOG1834|consen 34 EEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQPVPFDAVVVDKYTGEGVLRAKEPLDCELQKEYTFTI 113 (952)
T ss_pred ccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCCCCceEEEEeccCCceEEeecCcccccccccceEEE
Confidence 46799999999754334446889999982 2333 3466665331 8999999
Q ss_pred EEEECCCCC------CeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCC-CCe-EEEEEEcC
Q psy11815 54 IGSDLTGGP------DQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDP-DQR-ISYKISAG 125 (141)
Q Consensus 54 ~a~d~~~~~------~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~-~~~-i~Y~i~~~ 125 (141)
+|.|+|..+ .+.-++|+|+|.|+|+++|.|..+-|.+.|.|..... .|++|.|.|.|.++ +++ ..|.|..
T Consensus 114 QAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~yd-~il~veAiD~DCspq~sqIC~YEI~t- 191 (952)
T KOG1834|consen 114 QAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKVYD-SILRVEAIDKDCSPQYSQICEYEITT- 191 (952)
T ss_pred EEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecceeee-eeEEEEeecCCCCCcccceeEEEecC-
Confidence 999988643 5677899999999999999999999999999986655 89999999999975 554 5899986
Q ss_pred CCCCcEEEeCCCeEE
Q psy11815 126 NPESYFNIDIGSGSL 140 (141)
Q Consensus 126 ~~~~~F~Id~~tG~i 140 (141)
++-.|.||.+ |.|
T Consensus 192 -~d~PFaIdn~-G~i 204 (952)
T KOG1834|consen 192 -PDVPFAIDND-GNI 204 (952)
T ss_pred -CCCceEEcCC-Ccc
Confidence 4458999876 654
No 8
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.41 E-value=2.3e-12 Score=77.11 Aligned_cols=55 Identities=31% Similarity=0.435 Sum_probs=50.0
Q ss_pred EECCCCCCCeEEEEEecCCC------------------------CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCC
Q psy11815 27 SDGDLDPDQRISYKISAGNP------------------------ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVP 81 (141)
Q Consensus 27 ~D~D~~~n~~v~y~i~~~~~------------------------~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd~~P 81 (141)
+|+|.+.|+.++|+|.++.. ..|.|.|.|+|.+.+++++.++|.|+|.|+|||+|
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P 79 (79)
T smart00112 1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP 79 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence 47888889999999988762 78999999999999889999999999999999998
No 9
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.37 E-value=3.4e-12 Score=78.68 Aligned_cols=54 Identities=33% Similarity=0.571 Sum_probs=51.2
Q ss_pred eEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcCCCCCcEEEeCCCeEEC
Q psy11815 88 YYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSLG 141 (141)
Q Consensus 88 ~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~~~~~~F~Id~~tG~i~ 141 (141)
|.+.|+|+.++|+.++++.|.|+|.+.|+.+.|+|..++..++|.|++.||.|+
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~ 54 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEIS 54 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEE
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccc
Confidence 789999999999999999999999999999999999998789999999999874
No 10
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.18 E-value=7.6e-10 Score=76.66 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCCeeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecCCC------------------------CeEEEEEEEEE
Q psy11815 2 TLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNP------------------------ESYFNIDIGSD 57 (141)
Q Consensus 2 f~~~~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~------------------------~~y~l~v~a~d 57 (141)
|.+..|.+.|.|+.++|+.++++.|+|.|.+.|+.++|+|.++.. ..|.|.|.|+|
T Consensus 102 ~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D 181 (199)
T cd00031 102 FEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATD 181 (199)
T ss_pred ccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEE
Confidence 556789999999999999999999999999889999999998772 58999999999
Q ss_pred CCCCCCeEEEEEEEEEEe
Q psy11815 58 LTGGPDQVYLIVYIQVQN 75 (141)
Q Consensus 58 ~~~~~~~~~~~v~i~V~d 75 (141)
.+.+.++++..++|.|.|
T Consensus 182 ~~~~~~~~~~~i~i~v~d 199 (199)
T cd00031 182 GGGPPLSSTATVTVTVLD 199 (199)
T ss_pred CCCCCceeEEEEEEEEEC
Confidence 987778888999998875
No 11
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=97.86 E-value=2.3e-05 Score=46.37 Aligned_cols=33 Identities=30% Similarity=0.663 Sum_probs=28.9
Q ss_pred EECCCCCCCeEEEEEEcCCCCCcEEEeCCCeEE
Q psy11815 108 SDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140 (141)
Q Consensus 108 ~D~D~~~~~~i~Y~i~~~~~~~~F~Id~~tG~i 140 (141)
+|+|.|.|+.++|+|..++...+|.|++.||.|
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i 33 (79)
T smart00112 1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEI 33 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEE
Confidence 488998899999999987766899999999965
No 12
>KOG1834|consensus
Probab=97.45 E-value=0.0009 Score=53.90 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCCCeeEEEEecCCCCCceeEEEEeEECCCC-CCCeE-EEEEecCCC---------------------CeEEEEEEEEEC
Q psy11815 2 TLDPVYYAQIVENQSGILPIVQLAASDGDLD-PDQRI-SYKISAGNP---------------------ESYFNIDIGSDL 58 (141)
Q Consensus 2 f~~~~y~~~V~E~~~~g~~v~~v~a~D~D~~-~n~~v-~y~i~~~~~---------------------~~y~l~v~a~d~ 58 (141)
|..+.|.+.|.|.-- -..|++|.|.|+|-+ ++++| .|.|+..+- ..|.|+|.|.|+
T Consensus 149 f~ep~Yka~V~EGK~-yd~il~veAiD~DCspq~sqIC~YEI~t~d~PFaIdn~G~irnTekLny~ke~~Y~ltVtAyDC 227 (952)
T KOG1834|consen 149 FKEPWYKAHVTEGKV-YDSILRVEAIDKDCSPQYSQICEYEITTPDVPFAIDNDGNIRNTEKLNYTKEHQYKLTVTAYDC 227 (952)
T ss_pred hcccceeeEEeccee-eeeeEEEEeecCCCCCcccceeEEEecCCCCceEEcCCCccccccccccccceeEEEEEEEEec
Confidence 678889999999854 678899999999984 45554 688876442 899999999999
Q ss_pred CCCCCeEEEEEEEEEEeC
Q psy11815 59 TGGPDQVYLIVYIQVQNV 76 (141)
Q Consensus 59 ~~~~~~~~~~v~i~V~d~ 76 (141)
|..+..+...|+|+|...
T Consensus 228 g~kraa~d~lV~v~Vkp~ 245 (952)
T KOG1834|consen 228 GKKRAASDSLVTVHVKPT 245 (952)
T ss_pred ccccccCcceEEEEecCc
Confidence 986555557888888654
No 13
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=96.60 E-value=0.00096 Score=40.30 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred eEEEEecCCCCCceEEEEEEEECCCCCC--CeEEEEEEcCCCCCcEEEeCCCeEEC
Q psy11815 88 YYAQIVENQSGILPIVQLAASDGDLDPD--QRISYKISAGNPESYFNIDIGSGSLG 141 (141)
Q Consensus 88 ~~~~v~e~~~~g~~v~~v~a~D~D~~~~--~~i~Y~i~~~~~~~~F~Id~~tG~i~ 141 (141)
....|+|..++|+.|+.| |.|.-.... ..-.|++.......+|.++..||.|+
T Consensus 3 i~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~ 57 (84)
T PF08266_consen 3 IRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLF 57 (84)
T ss_dssp EEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEE
T ss_pred eEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEE
Confidence 356899999999999998 444332111 12367777766678999999999984
No 14
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=96.37 E-value=0.021 Score=34.96 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=26.3
Q ss_pred CCCCeeEEEEecCCCCCceeEEEEeEECCCCCCCeEEEEEecC-------CC-----------CeEEEEEEEEECCCC
Q psy11815 2 TLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAG-------NP-----------ESYFNIDIGSDLTGG 61 (141)
Q Consensus 2 f~~~~y~~~V~E~~~~g~~v~~v~a~D~D~~~n~~v~y~i~~~-------~~-----------~~y~l~v~a~d~~~~ 61 (141)
|.++.|.+.|+.+...|..|++|.-.|-.. +..+.|.-.+. .. ..-.|.|.|.|....
T Consensus 6 F~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ssDpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a~D~~~~ 81 (90)
T PF08758_consen 6 FSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESSDPDFRVLEDGSVYAKRPVQLSSEQRSFTVHAWDSQTQ 81 (90)
T ss_dssp --S-EEEE----SS-SS--EEE---B--SS-----EEEE---SEEEEETTTEEEEES--S-SSS-EEEEEEEEETTTT
T ss_pred cccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecCCCCEEEcCCCeEEEeeeEecCCCceEEEEEEECCCCC
Confidence 788999999999999999999999988754 44455544332 11 445788888887763
No 15
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=95.07 E-value=1.1 Score=38.43 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=20.6
Q ss_pred EEEEEEEEeCCCCCCccCCCceEEEEecCC
Q psy11815 67 LIVYIQVQNVNDNVPMTLDPVYYAQIVENQ 96 (141)
Q Consensus 67 ~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~ 96 (141)
...+|+|.| ||++|.|.-..-...|.|+.
T Consensus 515 s~ATVTIlD-DD~aGIfsFe~~~~sV~Es~ 543 (928)
T TIGR00845 515 NTATVTILD-DDHAGIFTFEEDVFHVSESI 543 (928)
T ss_pred ceEEEEEec-CcccCcccccCceEEEEcCC
Confidence 456777787 78899877555567788863
No 16
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=94.79 E-value=0.52 Score=28.91 Aligned_cols=30 Identities=27% Similarity=0.142 Sum_probs=25.8
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCC
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVND 78 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd 78 (141)
..|.++|.|+|..+ .+....+.|.|.+.|+
T Consensus 67 g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~ 96 (97)
T smart00736 67 GSLSLKVTATDSSG--ASASDTFTITVVNTND 96 (97)
T ss_pred cEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence 67999999999886 5677889999998876
No 17
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=94.58 E-value=0.077 Score=32.43 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcCCCCCcEEEeCCCeEE
Q psy11815 80 VPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140 (141)
Q Consensus 80 ~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~~~~~~F~Id~~tG~i 140 (141)
.|-|.+..|.+.|+.+...|..|++|.-.|-. .+..+.|.-. ++ .|.|.++ |.|
T Consensus 3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~--~~~~~~~~ss--Dp--dF~V~~D-GsV 56 (90)
T PF08758_consen 3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCT--GRRRVIFESS--DP--DFRVLED-GSV 56 (90)
T ss_dssp --B--S-EEEE----SS-SS--EEE---B--S--S---EEEE-----S--EEEEETT-TEE
T ss_pred cCCcccceEEEEcCchhhCCcEEEEEEeccCC--CCCceEEecC--CC--CEEEcCC-CeE
Confidence 47899999999999999999999999988775 3556777653 33 6888776 655
No 18
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.32 E-value=0.78 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.016 Sum_probs=22.1
Q ss_pred eEEEEEecCCCCeEEEEEEEEECCCCCCeEEEEEEEEEE
Q psy11815 36 RISYKISAGNPESYFNIDIGSDLTGGPDQVYLIVYIQVQ 74 (141)
Q Consensus 36 ~v~y~i~~~~~~~y~l~v~a~d~~~~~~~~~~~v~i~V~ 74 (141)
.+.|+-+.. ..|.|.|.|.|..+........+.|+|+
T Consensus 30 ~~~~~~L~~--G~Y~l~V~a~~~~~~~~~~~~~l~i~I~ 66 (66)
T PF07495_consen 30 SISYTNLPP--GKYTLEVRAKDNNGKWSSDEKSLTITIL 66 (66)
T ss_dssp EEEEES--S--EEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred EEEEEeCCC--EEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence 455554433 7899999999987643333366666663
No 19
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=88.22 E-value=3.7 Score=25.56 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCeEEEEEecCCC----------CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCccCCCceEEEEecC
Q psy11815 34 DQRISYKISAGNP----------ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVEN 95 (141)
Q Consensus 34 n~~v~y~i~~~~~----------~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~ 95 (141)
+|...|.+....+ ..-.|++.+.|+. +.+|.|+|.-.|| +|+.... -...+.|+
T Consensus 34 ~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt------t~~vtItI~GtND-apvi~~~-~~g~v~ED 97 (99)
T TIGR01965 34 DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT------SQTVTITITGAND-AAVIGGA-DTGSVTED 97 (99)
T ss_pred CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC------eEEEEEEEEccCC-CCEEecc-cceeEecC
Confidence 4567788765432 3456777888852 7889999999999 5544322 22445444
No 20
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=80.00 E-value=15 Score=24.31 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCceeEEEEeEECCCCCCCeEEEEEecCCC-------CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCccCCCceE
Q psy11815 17 GILPIVQLAASDGDLDPDQRISYKISAGNP-------ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYY 89 (141)
Q Consensus 17 ~g~~v~~v~a~D~D~~~n~~v~y~i~~~~~-------~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~ 89 (141)
.|..|+++.-. . ++...|.+...-+ -...|.|.|+|..+.. +...+.|+|.| | .|.-.... .
T Consensus 53 ~g~~Vftvtl~-~----~GsYtftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~--s~~~l~VtI~D--D-~P~~~~~~-~ 121 (137)
T TIGR03660 53 GGNPVFTLTLN-A----DGSYEFTLEGPLDHAAGSDELTLNFPIIATDFDGDT--SSITLPVTIVD--D-VPTITDVD-A 121 (137)
T ss_pred CCcEEEEEEEC-C----CccEEEEEcccccCCCCCceEEEeeeEEEEeCCCCc--cccEEEEEEEC--C-CCeecccc-c
Confidence 35556665542 2 3456666654332 3556788888877643 23577888877 5 36654433 3
Q ss_pred EEEecC
Q psy11815 90 AQIVEN 95 (141)
Q Consensus 90 ~~v~e~ 95 (141)
+.|.|.
T Consensus 122 ~~V~E~ 127 (137)
T TIGR03660 122 LTVDED 127 (137)
T ss_pred eEEecc
Confidence 677774
No 21
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=66.24 E-value=37 Score=22.83 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=17.3
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEEE
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQVQ 74 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V~ 74 (141)
..|.|+|.|.|..+ ...+..+.+...
T Consensus 123 ~~YtLtV~a~D~aG--N~~~~si~F~y~ 148 (158)
T PF13750_consen 123 DSYTLTVSATDKAG--NQSTKSISFSYM 148 (158)
T ss_pred CeEEEEEEEEecCC--CEEEEEEEEEEe
Confidence 57888888888765 345555665554
No 22
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=64.46 E-value=22 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=20.2
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEEEeC
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQVQNV 76 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~ 76 (141)
..|.+.+.|.|..+ ..........+.|.
T Consensus 23 g~yt~~v~a~D~AG--N~~~~~~~~~i~d~ 50 (60)
T PF12245_consen 23 GEYTLTVTATDKAG--NTSSSTTQIVIVDN 50 (60)
T ss_pred ccEEEEEEEEECCC--CEEEeeeEEEEEcC
Confidence 67999999999887 34555566666554
No 23
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=64.32 E-value=29 Score=20.89 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEcC
Q psy11815 70 YIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAG 125 (141)
Q Consensus 70 ~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~~ 125 (141)
+|.|.| ||.+ .+.-..-...+.|+.. ..-..|.-...+....-.+.|+...+
T Consensus 2 tvtI~d-~d~~-~v~f~~~~~~v~E~~~--~~~v~V~~~~~~~~~~v~v~~~~~~g 53 (100)
T PF03160_consen 2 TVTILD-DDDP-TVSFSSPSYTVSEGDG--TVTVTVTRSGGSLDGPVTVNYSTVDG 53 (100)
T ss_dssp EEEEE--TTSE-EEEESSSEEEEETTSS--EEEEEEEEESS-TSSEEEEEEEEEES
T ss_pred EEEEEC-CCCC-EEEEeCCEEEEEeCCC--EEEEEEEEcccCCCcceEEEEEEeCC
Confidence 466777 5655 6655555567777643 33334444433322344566766554
No 24
>KOG3597|consensus
Probab=62.22 E-value=21 Score=28.37 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=43.7
Q ss_pred EEEEEEEEEEeCCCCCCccCCCceEEEEecCCCCCceEEEEEEEECCCCCCCeEEEEEEc
Q psy11815 65 VYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISA 124 (141)
Q Consensus 65 ~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~~~~i~Y~i~~ 124 (141)
.+....|+|..+||.+..+....+.+-+.|+...-...-.+++.|+|... ..+.|++..
T Consensus 24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-~~l~f~v~~ 82 (442)
T KOG3597|consen 24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAP-LPLEFQVLG 82 (442)
T ss_pred EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCc-cceEEEEcc
Confidence 45678899999999888777777778888876544445568888999753 457787764
No 25
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=59.50 E-value=13 Score=20.11 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=13.6
Q ss_pred CCeEEEEEEcCC----CCC--cEEEeCCCeEE
Q psy11815 115 DQRISYKISAGN----PES--YFNIDIGSGSL 140 (141)
Q Consensus 115 ~~~i~Y~i~~~~----~~~--~F~Id~~tG~i 140 (141)
++...|.+.-.. ... .+.||+.||.|
T Consensus 29 ~~~~~Y~v~~~~~~~~~~~~~~v~VDa~tG~I 60 (64)
T PF03413_consen 29 NGRLVYEVEVVSDDDPDGGEYEVYVDAYTGEI 60 (64)
T ss_dssp TCEEEEEEEEEBTTSTTTEEEEEEEETTT--E
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEECCCCeE
Confidence 455666664221 122 44599999987
No 26
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=57.93 E-value=33 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCCeEEEEEEcCCCCCcEEEeCCCeEEC
Q psy11815 114 PDQRISYKISAGNPESYFNIDIGSGSLG 141 (141)
Q Consensus 114 ~~~~i~Y~i~~~~~~~~F~Id~~tG~i~ 141 (141)
.+.+..|++...+ .-.+||..||.|+
T Consensus 201 R~S~~T~SLs~P~--~~v~lD~~TG~l~ 226 (263)
T PF07861_consen 201 RGSPFTYSLSTPV--AGVRLDANTGALS 226 (263)
T ss_pred cCCcceEEeccCC--CceEEecccceee
Confidence 3678899997543 4699999999884
No 27
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=52.69 E-value=44 Score=19.33 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=19.8
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEE
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQV 73 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V 73 (141)
..|.++..|+|..+ ..+.+.+.|+|
T Consensus 57 G~t~V~ytA~D~~G--N~a~C~f~V~V 81 (81)
T PF02494_consen 57 GTTTVTYTATDAAG--NSATCSFTVTV 81 (81)
T ss_pred ceEEEEEEEEECCC--CEEEEEEEEEC
Confidence 67889999999865 56777777764
No 28
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=48.21 E-value=23 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=9.1
Q ss_pred CcEEEeCCCeEEC
Q psy11815 129 SYFNIDIGSGSLG 141 (141)
Q Consensus 129 ~~F~Id~~tG~i~ 141 (141)
....||+.||.|+
T Consensus 14 ~gLs~d~~tG~is 26 (49)
T PF05345_consen 14 SGLSLDPSTGTIS 26 (49)
T ss_pred CcEEEeCCCCEEE
Confidence 4677777777764
No 29
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=46.90 E-value=87 Score=21.05 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=12.8
Q ss_pred EEEEEecCCCCeEEEEE-EEEECCC
Q psy11815 37 ISYKISAGNPESYFNID-IGSDLTG 60 (141)
Q Consensus 37 v~y~i~~~~~~~y~l~v-~a~d~~~ 60 (141)
..|.+..-.+..|.+++ .|.|..+
T Consensus 5 ~~fd~~~l~dG~Y~l~~~~a~D~ag 29 (158)
T PF13750_consen 5 YTFDLSTLPDGSYTLTVVTATDAAG 29 (158)
T ss_pred EEEEeCcCCCccEEEEEEEEEecCC
Confidence 34444333335666666 5666655
No 30
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=46.50 E-value=74 Score=20.08 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCCeEEEEEEEEECCCCCCeEEEEEEEEEE
Q psy11815 35 QRISYKISAGNPESYFNIDIGSDLTGGPDQVYLIVYIQVQ 74 (141)
Q Consensus 35 ~~v~y~i~~~~~~~y~l~v~a~d~~~~~~~~~~~v~i~V~ 74 (141)
+...|.+..| ..|.++|+++|..+-..+ ..+.|.|-
T Consensus 70 ~~at~~v~kg--G~y~m~V~lCn~dGCS~S--~~~~I~VA 105 (106)
T cd02848 70 GTATFKVGKG--GRYQMQVALCNGDGCSTS--AAKEIVVA 105 (106)
T ss_pred cEEEEEeCCC--CeEEEEEEEECCCCccCc--CCEEEEec
Confidence 3455555443 679999999998774444 34444443
No 31
>COG3212 Predicted membrane protein [Function unknown]
Probab=42.04 E-value=38 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=24.5
Q ss_pred EEEEEECCCCCCCeEEEEEE--cC-CCCCcEEEeCCCeEE
Q psy11815 104 QLAASDGDLDPDQRISYKIS--AG-NPESYFNIDIGSGSL 140 (141)
Q Consensus 104 ~v~a~D~D~~~~~~i~Y~i~--~~-~~~~~F~Id~~tG~i 140 (141)
+|...+.+. .+++..|.+. .+ +...-|.||..||.|
T Consensus 99 ~v~dieLe~-~~g~~vYevei~~~d~~e~ev~iDA~TG~I 137 (144)
T COG3212 99 KVDDIELEE-DNGRLVYEVEIVKDDGQEYEVEIDAKTGKI 137 (144)
T ss_pred ceeEEEEec-cCCEEEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 455555553 4688889764 33 334679999999987
No 32
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=40.55 E-value=60 Score=17.39 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=18.7
Q ss_pred CeEEEEEecCCCCeEEEEEEEEECCCC
Q psy11815 35 QRISYKISAGNPESYFNIDIGSDLTGG 61 (141)
Q Consensus 35 ~~v~y~i~~~~~~~y~l~v~a~d~~~~ 61 (141)
+...+.+....+..|.+++.|+|..+-
T Consensus 12 G~Ws~t~~~~~dG~y~itv~a~D~AGN 38 (54)
T PF13754_consen 12 GNWSFTVPALADGTYTITVTATDAAGN 38 (54)
T ss_pred CcEEEeCCCCCCccEEEEEEEEeCCCC
Confidence 444555544445889999999997763
No 33
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=40.03 E-value=72 Score=20.99 Aligned_cols=46 Identities=13% Similarity=-0.070 Sum_probs=22.6
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCCccCCCceEEEEecCCCC
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSG 98 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd~~P~f~~~~~~~~v~e~~~~ 98 (141)
..|+++|+++|..+- +.+..+.|.|.|-+- .- ..+..+.+.||..+
T Consensus 83 G~y~~~VeLCN~~GC--S~S~~~~V~VaDTDG-sH---l~pL~~~~~~nN~~ 128 (133)
T PF08329_consen 83 GRYQMQVELCNADGC--STSAPVEVVVADTDG-SH---LAPLPYNWDENNKP 128 (133)
T ss_dssp EEEEEEEEEEETTEE--EE---EEEEEE-TTS-TT---S--------TTS--
T ss_pred CEEEEEEEEECCCCc--ccCCCEEEEEeCCCc-cc---cccccCcccccCCC
Confidence 789999999998873 445578888888642 11 12234456666544
No 34
>PF09100 Qn_am_d_aIV: Quinohemoprotein amine dehydrogenase, alpha subunit domain IV; InterPro: IPR015184 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=37.29 E-value=1.2e+02 Score=19.88 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=17.7
Q ss_pred CeEEEEEEEEECC-CCCCeEEEEEEEEEEeCCCCCC
Q psy11815 47 ESYFNIDIGSDLT-GGPDQVYLIVYIQVQNVNDNVP 81 (141)
Q Consensus 47 ~~y~l~v~a~d~~-~~~~~~~~~v~i~V~d~Nd~~P 81 (141)
..=+|.|.|+=.. ..+++....+.|+|.+-|+ ||
T Consensus 98 N~Gnl~VvAtv~d~~~~l~~e~~liVtVqr~~~-pp 132 (133)
T PF09100_consen 98 NAGNLKVVATVKDGGKPLTGEAHLIVTVQRWNN-PP 132 (133)
T ss_dssp S-EEEEEEEEETTTT---EEEEEEEEE---S----S
T ss_pred CcccEEEEEEEccCCcccceeEeEEEEeecccC-CC
Confidence 3446777776543 3568999999999988875 55
No 35
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=37.15 E-value=1.5e+02 Score=22.81 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=13.1
Q ss_pred CeEEEEEEcCCCC-CcEEEeCCCeEE
Q psy11815 116 QRISYKISAGNPE-SYFNIDIGSGSL 140 (141)
Q Consensus 116 ~~i~Y~i~~~~~~-~~F~Id~~tG~i 140 (141)
+++-|--.++... ..|+|++.+|.|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L 280 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKL 280 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEE
Confidence 4555554443322 456666666654
No 36
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=35.22 E-value=44 Score=20.38 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCcEEEeCCCeEEC
Q psy11815 118 ISYKISAGNPESYFNIDIGSGSLG 141 (141)
Q Consensus 118 i~Y~i~~~~~~~~F~Id~~tG~i~ 141 (141)
-.|+-.+........||+.||+|.
T Consensus 62 svYRWdG~gEPq~P~ID~ntG~It 85 (91)
T PF12461_consen 62 SVYRWDGVGEPQTPTIDKNTGNIT 85 (91)
T ss_pred EEEEecCCCCccCceEcCCCCeEe
Confidence 356665433336778999999984
No 37
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.98 E-value=34 Score=16.71 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=7.6
Q ss_pred CcEEEeCCCeEE
Q psy11815 129 SYFNIDIGSGSL 140 (141)
Q Consensus 129 ~~F~Id~~tG~i 140 (141)
..+.+|..||++
T Consensus 11 ~l~AlD~~TG~~ 22 (38)
T PF01011_consen 11 YLYALDAKTGKV 22 (38)
T ss_dssp EEEEEETTTTSE
T ss_pred EEEEEECCCCCE
Confidence 456667777654
No 38
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=34.03 E-value=91 Score=17.56 Aligned_cols=17 Identities=12% Similarity=-0.232 Sum_probs=12.3
Q ss_pred CeEEEEEEEEECCCCCC
Q psy11815 47 ESYFNIDIGSDLTGGPD 63 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~ 63 (141)
..|.++|.+.|.+...+
T Consensus 31 ~~~~vtV~V~~~~~G~L 47 (64)
T TIGR03786 31 TVHTVTVTVTDDEQGKL 47 (64)
T ss_pred CEEEEEEEEEECCCCcE
Confidence 67888888888754433
No 39
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=32.31 E-value=1.5e+02 Score=19.41 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=16.3
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEE
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQV 73 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V 73 (141)
..|.|.+.++|..+ ........|.|
T Consensus 107 G~YH~~i~VtD~~G--n~~~~~~~i~I 131 (132)
T PF15418_consen 107 GDYHFMITVTDAAG--NQTEEERSIKI 131 (132)
T ss_pred cceEEEEEEEECCC--CEEEEEEEEEE
Confidence 78888888888776 34444444443
No 40
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=28.94 E-value=1.7e+02 Score=19.08 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=31.9
Q ss_pred eeEEEEeEECCCCCCCeEEEEEecCCC-----CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCC
Q psy11815 20 PIVQLAASDGDLDPDQRISYKISAGNP-----ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVND 78 (141)
Q Consensus 20 ~v~~v~a~D~D~~~n~~v~y~i~~~~~-----~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd 78 (141)
..-+|.+.|.+ +-.+.|++.+|.. ..|..++++...+.. .+....++...-.+.
T Consensus 64 ~kE~l~~~D~~---~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~--~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 64 VKERIDAVDEE---NKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDG--GCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEEEEccc---ccEEEEEEEecccccCceEEEEEEEEEEECCCC--CEEEEEEEEEEECCC
Confidence 34455555543 5789999988764 456666666655321 245556666555544
No 41
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=27.75 E-value=94 Score=16.47 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=12.1
Q ss_pred EEEEEEEEEEeCCCCC
Q psy11815 65 VYLIVYIQVQNVNDNV 80 (141)
Q Consensus 65 ~~~~v~i~V~d~Nd~~ 80 (141)
.+.+++|++.|.|.+|
T Consensus 13 e~I~ltVt~kda~G~p 28 (47)
T PF05688_consen 13 ETIPLTVTVKDANGNP 28 (47)
T ss_pred CeEEEEEEEECCCCCC
Confidence 4578899999997644
No 42
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=26.41 E-value=1.1e+02 Score=17.53 Aligned_cols=14 Identities=0% Similarity=-0.064 Sum_probs=5.0
Q ss_pred eEEEEecCCCCCce
Q psy11815 7 YYAQIVENQSGILP 20 (141)
Q Consensus 7 y~~~V~E~~~~g~~ 20 (141)
+.+.+++++.+|+.
T Consensus 56 ~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 56 FTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEE-TT--SEEE
T ss_pred EEEECCCCCCCceE
Confidence 34444444444443
No 43
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=24.79 E-value=1.6e+02 Score=17.69 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=18.2
Q ss_pred CCeEEEEEEcCCCCCcEEEeCCCeEE
Q psy11815 115 DQRISYKISAGNPESYFNIDIGSGSL 140 (141)
Q Consensus 115 ~~~i~Y~i~~~~~~~~F~Id~~tG~i 140 (141)
+..+.|+|...++ ..|.|.|..|.|
T Consensus 31 ~~~i~fKiktt~~-~~y~v~P~~G~i 55 (109)
T PF00635_consen 31 DKPIAFKIKTTNP-NRYRVKPSYGII 55 (109)
T ss_dssp SSEEEEEEEES-T-TTEEEESSEEEE
T ss_pred CCcEEEEEEcCCC-ceEEecCCCEEE
Confidence 3478888876554 468898988877
No 44
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=24.23 E-value=1.5e+02 Score=16.75 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=15.7
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEE
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQ 72 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~ 72 (141)
..|.+++.++|..+ .+....+.|.
T Consensus 57 G~y~v~l~v~d~~g--~~~~~~~~V~ 80 (81)
T cd00146 57 GTYTVTLTVTNAVG--SSSTKTTTVV 80 (81)
T ss_pred cEEEEEEEEEeCCC--CEEEEEEEEE
Confidence 77999999999764 2333344443
No 45
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.64 E-value=89 Score=14.12 Aligned_cols=12 Identities=17% Similarity=0.639 Sum_probs=7.8
Q ss_pred CcEEEeCCCeEE
Q psy11815 129 SYFNIDIGSGSL 140 (141)
Q Consensus 129 ~~F~Id~~tG~i 140 (141)
.++.+|..+|.+
T Consensus 17 ~l~a~d~~~G~~ 28 (33)
T smart00564 17 TLYALDAKTGEI 28 (33)
T ss_pred EEEEEEcccCcE
Confidence 466677777764
No 46
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=21.97 E-value=2.5e+02 Score=18.59 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=34.5
Q ss_pred EEEEeEECCCCCCCeEEEEEecCCC----CeEEEEEEEEECCCCCCeEEEEEEEEEEeCCCCCC
Q psy11815 22 VQLAASDGDLDPDQRISYKISAGNP----ESYFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVP 81 (141)
Q Consensus 22 ~~v~a~D~D~~~n~~v~y~i~~~~~----~~y~l~v~a~d~~~~~~~~~~~v~i~V~d~Nd~~P 81 (141)
-++.+.|.+ |-.+.|++.+|+. ..|..++.....+.. .+.+..++.-.-.+++.|
T Consensus 70 ekve~~D~~---~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g--~~v~k~t~~Ye~~~~~~~ 128 (151)
T PF00407_consen 70 EKVEAIDEE---NKTITYTVIEGDVLGDYKSFKSTIQKIPKGDG--GCVVKWTIEYEKKGEDVP 128 (151)
T ss_dssp EEEEEEETT---TTEEEEEEEEETTGTTTEEEEEEEEEEEETTS--CEEEEEEEEEEESSTSCH
T ss_pred EEEEeecCC---CcEEEEEEEeccccccEEEEEEEEEecCCCCC--ceEEEEEEEEEecCCCCC
Confidence 456666655 6789999998875 456566555533322 145666666666776653
No 47
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=21.89 E-value=2.2e+02 Score=17.85 Aligned_cols=9 Identities=44% Similarity=0.320 Sum_probs=4.7
Q ss_pred EEEEEEEeC
Q psy11815 68 IVYIQVQNV 76 (141)
Q Consensus 68 ~v~i~V~d~ 76 (141)
.+.|.|.|-
T Consensus 64 ~l~i~V~d~ 72 (126)
T cd04046 64 PIKIQVWNS 72 (126)
T ss_pred EEEEEEEEC
Confidence 455555553
No 48
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=21.16 E-value=3.2e+02 Score=19.55 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=4.6
Q ss_pred eEEEEEEEEE
Q psy11815 48 SYFNIDIGSD 57 (141)
Q Consensus 48 ~y~l~v~a~d 57 (141)
.|.+.|.|.|
T Consensus 167 ~Yt~~v~a~~ 176 (221)
T PRK12634 167 KYGVTATQTD 176 (221)
T ss_pred eeEEEEEEEe
Confidence 4444444444
No 49
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=20.15 E-value=1.8e+02 Score=16.26 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=17.7
Q ss_pred CeEEEEEEEEECCCCCCeEEEEEEEEE
Q psy11815 47 ESYFNIDIGSDLTGGPDQVYLIVYIQV 73 (141)
Q Consensus 47 ~~y~l~v~a~d~~~~~~~~~~~v~i~V 73 (141)
..|.+++.+.|..+ +.++.+.|.|
T Consensus 55 G~y~v~l~v~n~~g---~~~~~~~i~v 78 (79)
T smart00089 55 GTYTVTLTVTNAVG---SASATVTVVV 78 (79)
T ss_pred cEEEEEEEEEcCCC---cEEEEEEEEE
Confidence 78999999998776 4556666655
Done!