RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11815
(141 letters)
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 75.1 bits (185), Expect = 7e-18
Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 36/168 (21%)
Query: 6 VYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNID-------- 53
+ EN+ G P L + D + ++ Y I+ P F I+
Sbjct: 4 IAAISCPENEKGEFP-KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 54 ----------------IGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQS 97
G + + + I V + NDN P V+ + E
Sbjct: 63 TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 98 GILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSG 138
+++++A+D D D + I+Y I + +PE F ++ +G
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Score = 40.8 bits (96), Expect = 3e-05
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 87 VYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGSL 140
+ EN+ G P L + D + ++ Y I+ P F I+ +G L
Sbjct: 4 IAAISCPENEKGEFP-KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWL 60
Score = 34.2 bits (79), Expect = 0.006
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNID 53
V+ + E +++++A+D D D + I+Y I + +PE F ++
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 72.8 bits (179), Expect = 7e-17
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 34/161 (21%)
Query: 11 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS------------ 56
I ENQ P + ++ SD R++ K +P+ F I+ +
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE 69
Query: 57 ------------DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQ 104
D +G + + + + V + NDN P+ + Y ++E +++
Sbjct: 70 TIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMR 129
Query: 105 LAASDGDLDPDQ---RISYKISAGNPE----SYFNIDIGSG 138
+ A D D DP + Y I P+ + F ID G
Sbjct: 130 MTAFDAD-DPATDNALLRYNIRQQTPDKPSPNMFYIDPEKG 169
Score = 40.1 bits (94), Expect = 6e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 92 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
I ENQ P + ++ SD R++ K +P+ F I+ +GS+
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSV 60
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 71.2 bits (175), Expect = 2e-16
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 37/163 (22%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGS---------- 56
+ EN G P +L D D + + Y ++ P F I+ S
Sbjct: 9 LPENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 57 --------------DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPI 102
D+ G + + + I V ++NDN P L V+ + E +
Sbjct: 68 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 103 VQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSG 138
+ + A D D DP+ + Y+I + P + F I+ +G
Sbjct: 128 MTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 70.8 bits (174), Expect = 3e-16
Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 34/158 (21%)
Query: 11 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS------------- 56
++E +G V SD D D + Y +S F I+ +
Sbjct: 9 LLEEYTGSDYQYVGKLHSDQD-RGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 57 -----------DLTGGPDQV-YLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQ 104
+ G I++ ++NDN P+ VY A + E +VQ
Sbjct: 68 KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127
Query: 105 LAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSG 138
+ A+D D DP ++ Y I G P YF+++ +G
Sbjct: 128 VTATDAD-DPTYGNSAKVVYSILQGQP--YFSVESETG 162
Score = 37.3 bits (87), Expect = 7e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 92 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
++E +G V SD D D + Y +S F I+ +G +
Sbjct: 9 LLEEYTGSDYQYVGKLHSDQD-RGDGSLKYILSGDGAGDLFIINENTGDI 57
Score = 34.2 bits (79), Expect = 0.006
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 4 DPVYYAQIVENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNID 53
VY A + E +VQ+ A+D D DP ++ Y I G P YF+++
Sbjct: 108 KDVYTATVPEMADVGTFVVQVTATDAD-DPTYGNSAKVVYSILQGQP--YFSVE 158
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 70.8 bits (174), Expect = 4e-16
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 34/158 (21%)
Query: 11 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS------------- 56
++E +G P +V SD D D I Y +S + F ID S
Sbjct: 10 VIEEYTGPDPVLVGRLHSDID-SGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 57 ----DLT------GGPDQV--YLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQ 104
L + ++VQ++NDN P L +Y+A + E + ++Q
Sbjct: 69 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQ 128
Query: 105 LAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSG 138
+ ASD D DP ++ Y I G P YF+++ +G
Sbjct: 129 VTASDAD-DPTYGNSAKLVYSILEGQP--YFSVEAQTG 163
Score = 37.3 bits (87), Expect = 7e-04
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 34/109 (31%)
Query: 4 DPVYYAQIVENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGS--- 56
+Y+A + E + ++Q+ ASD D DP ++ Y I G P YF+++ +
Sbjct: 109 HEIYHANVPERSNVGTSVIQVTASDAD-DPTYGNSAKLVYSILEGQP--YFSVEAQTGII 165
Query: 57 ---------------DLT-----GGPDQVYL----IVYIQVQNVNDNVP 81
+ G L V I + + +
Sbjct: 166 RTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 35.7 bits (83), Expect = 0.002
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 92 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
++E +G P +V SD D D I Y +S + F ID SG++
Sbjct: 10 VIEEYTGPDPVLVGRLHSDID-SGDGNIKYILSGEGAGTIFVIDDKSGNI 58
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 67.4 bits (165), Expect = 5e-15
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 38/160 (23%)
Query: 10 QIVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS----------- 56
I E LP + +L +S G+ + Y I + + F +
Sbjct: 8 HIREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTIFKVQGYDGDIYAFERLDR 63
Query: 57 -------------DLTGGPD-QVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPI 102
D + I+V ++NDN P+ + ++ + E +
Sbjct: 64 EKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123
Query: 103 VQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSG 138
++ A D D DP ++Y+I GN YF +D
Sbjct: 124 TKVTAEDAD-DPTVAGHATVTYQIIKGNE--YFTVDDSGV 160
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 91 QIVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
I E LP + +L +S G+ + Y I + + F + G +
Sbjct: 8 HIREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTIFKVQGYDGDI 55
Score = 33.5 bits (77), Expect = 0.011
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNID 53
++ + E + ++ A D D DP ++Y+I GN YF +D
Sbjct: 107 KIFNGSVPEMSRLGTSVTKVTAEDAD-DPTVAGHATVTYQIIKGNE--YFTVD 156
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 66.2 bits (162), Expect = 7e-14
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 37/164 (22%)
Query: 10 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGS--------- 56
+ EN G P +L D D + + Y ++ P F I+ S
Sbjct: 8 NLPENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 57 ---------------DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILP 101
D+ G + + + I V ++NDN P L V+ + E
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 102 IVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSG 138
++ + A D D DP+ + Y+I + P + F I+ +G
Sbjct: 127 VMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
Score = 66.2 bits (162), Expect = 7e-14
Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 39/172 (22%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI---------- 52
+Y ++ EN+ + + L +D D P +Y+IS G+P F I
Sbjct: 226 MTFYGEVPENRVDV-IVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGL 284
Query: 53 ----------------------DIGSDLTGG--PDQVYLIVYIQVQNVNDNVPMTLDPVY 88
+ G P Q V + V +VN+N P
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPK 343
Query: 89 YAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
+ E + L A D D Q I Y +P ++ ID +G +
Sbjct: 344 IIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL-SDPANWLKIDPVNGQI 394
Score = 59.3 bits (144), Expect = 2e-11
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 39/168 (23%)
Query: 4 DPVYYAQIVENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNID--- 53
V+ + E ++ + A D D DP+ + Y+I + P + F I+
Sbjct: 110 HQVWNGSVPEGSKPGTYVMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNET 168
Query: 54 ----------------------IGSDLTGGPDQ---VYLIVYIQVQNVNDNVPMTLDPVY 88
+D+ G P I V +VNDN P +
Sbjct: 169 GDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTF 228
Query: 89 YAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNID 134
Y ++ EN+ + + L +D D P +Y+IS G+P F I
Sbjct: 229 YGEVPENRVDV-IVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAIL 275
Score = 53.1 bits (128), Expect = 3e-09
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 36/167 (21%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS-------- 56
+ E + L A D D Q I Y +P ++ ID +
Sbjct: 341 NPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL-SDPANWLKIDPVNGQITTIAV 399
Query: 57 ---DLTGGPDQVYLI-----------------VYIQVQNVNDNVPMTLDPVYYAQIVENQ 96
+ + +Y + I + ++NDN P + P A+ E
Sbjct: 400 LDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP-QVLP-QEAETCETP 457
Query: 97 SGILPIVQLAASDGDLDPDQ---RISYKISAGNPESYFNIDIGSGSL 140
+ + A D D+DP+ +S + + I+ +G
Sbjct: 458 E--PNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDF 502
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 91 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGSL 140
+ EN G P +L D D + + Y ++ P F I+ SG L
Sbjct: 8 NLPENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQL 60
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 64.7 bits (158), Expect = 3e-13
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 36/163 (22%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGS---------- 56
EN+ G P L + D + ++ Y I+ P F I+ +
Sbjct: 9 CPENEKGEFP-KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67
Query: 57 --------------DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPI 102
G + + + I V + NDN P V+ + E +
Sbjct: 68 REAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSV 127
Query: 103 VQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSG 138
++++A+D D D + I+Y I + +PE F ++ +G
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Score = 62.0 bits (151), Expect = 3e-12
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 37/169 (21%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNIDIGSD----- 57
Y Q+ EN+ I L +D D P + Y + +P+ F +
Sbjct: 224 STYQGQVPENEVNA-RIATLKVTDDDAPNTPAWKAVYTVV-NDPDQQFVVVTDPTTNDGI 281
Query: 58 --------------------------LTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQ 91
G V + V +VN+ P+ + +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVE 340
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
+ E+ I A + D DQ+I+Y+I + ++ I+ +G++
Sbjct: 341 VPEDFGVGQEITSYTAREPDTFMDQKITYRI-WRDTANWLEINPETGAI 388
Score = 56.6 bits (137), Expect = 2e-10
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 36/163 (22%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNID---- 53
V+ + E +++++A+D D D + I+Y I + +PE F ++
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 54 ---------------------IGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQI 92
+DL G I V+++NDN P+ Y Q+
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 93 VENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI 133
EN+ I L +D D P + Y + +P+ F +
Sbjct: 231 PENEVNA-RIATLKVTDDDAPNTPAWKAVYTVV-NDPDQQFVV 271
Score = 53.9 bits (130), Expect = 1e-09
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 37/165 (22%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS-------- 56
++ E+ I A + D DQ+I+Y+I + ++ I+ +
Sbjct: 335 AERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRI-WRDTANWLEINPETGAIFTRAE 393
Query: 57 ----DLTGGPDQVYLI-----------------VYIQVQNVNDNVPMTLDPVYYAQIVEN 95
D + Y+ + + + +VNDN P+
Sbjct: 394 MDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNP 453
Query: 96 QSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGS 139
Q + D DL P + +++ G + + I+ +
Sbjct: 454 QP-----HIITILDPDLPPNTSPFTAELTHGASVN-WTIEYNDAA 492
Score = 37.7 bits (88), Expect = 6e-04
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGSL 140
EN+ G P L + D + ++ Y I+ P F I+ +G L
Sbjct: 9 CPENEKGEFP-KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWL 60
Score = 27.3 bits (61), Expect = 1.7
Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 31/111 (27%)
Query: 7 YYAQIVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSDLT------ 59
Q + + D DL P + +++ G + + I+
Sbjct: 444 RNMQFCQRNP---QPHIITILDPDLPPNTSPFTAELTHGASVN-WTIEYNDAAQESLILQ 499
Query: 60 -------------------GGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQ 91
DQV + + V + V + ++
Sbjct: 500 PRKDLEIGEYKIHLKLADNQNKDQVT-TLDVHVCDCEGTVNNCMKAHHHHH 549
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 61.8 bits (151), Expect = 8e-13
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 30/143 (20%)
Query: 21 IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS-DLT-------------------- 59
+ QL A D D DP + + +S +F ++ + +
Sbjct: 29 VTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVS 85
Query: 60 --GGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQR 117
G V IQV +VNDN P + Y +I EN PI + A+D DL
Sbjct: 86 DHQGVITRK--VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGS 143
Query: 118 ISYKISAGNPESYFNIDIGSGSL 140
+ Y +P +F ID G +
Sbjct: 144 VLYSFQPPSP--FFAIDSARGIV 164
Score = 33.0 bits (76), Expect = 0.020
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNID 53
Y +I EN PI + A+D DL + Y +P +F ID
Sbjct: 112 QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAID 158
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 63.0 bits (153), Expect = 1e-12
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 38/165 (23%)
Query: 10 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGS--------- 56
++ EN+ G P +L + D ++ Y I+ P+ F I+ +
Sbjct: 163 KVSENERGPFP-KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 221
Query: 57 ---------------DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILP 101
G P + + + I V + NDN P V+ + E
Sbjct: 222 DREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ 281
Query: 102 IVQLAASDGDLDPDQ----RISYKISAGNPES----YFNIDIGSG 138
++ ++A+D D D +SY I +PE F I+ +G
Sbjct: 282 VMAVSATDED-DNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 325
Score = 61.8 bits (150), Expect = 2e-12
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 37/169 (21%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNIDIGSD----- 57
Y A + EN+ G + +L+ +D D+ P + YKI N +FNI +
Sbjct: 379 KTYTALVPENEIGF-EVQRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGI 436
Query: 58 --------------------------LTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQ 91
+ V + V++VN+ P + V
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 495
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
+ E+ S I+ L A D D Q++SY I +P + ++ +G +
Sbjct: 496 VSEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIV 543
Score = 59.1 bits (143), Expect = 3e-11
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 38/167 (22%)
Query: 3 LDPVYYAQIVENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPES----YFNID- 53
V+ + E ++ ++A+D D D +SY I +PE F I+
Sbjct: 264 TQDVFRGSVREGVQPGTQVMAVSATDED-DNIDSLNGVLSYSILKQDPEEPIPNLFTINR 322
Query: 54 ------------------------IGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYY 89
+DL G V IQ+ + NDN P+ Y
Sbjct: 323 ETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYT 382
Query: 90 AQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNID 134
A + EN+ G + +L+ +D D+ P + YKI N +FNI
Sbjct: 383 ALVPENEIGF-EVQRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNIT 427
Score = 55.3 bits (133), Expect = 5e-10
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS-------- 56
V + E+ S I+ L A D D Q++SY I +P + ++ +
Sbjct: 490 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNGN 548
Query: 57 ---DLTGGPDQVYLI-----------------VYIQVQNVNDNVPMTLDPVYYAQIVENQ 96
+ + Y + + + V +VNDN P P + +N
Sbjct: 549 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP-VPSPRVFTMCDQNP 607
Query: 97 SGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGSL 140
L SD D+ P +S G+ ++ G+
Sbjct: 608 EP----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 648
Score = 39.5 bits (92), Expect = 2e-04
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 14/124 (11%)
Query: 30 DLDPDQRISYKISA----GNPESYFNIDIGSDLTGGPD--QVYLIVYIQVQNVNDNVPMT 83
+ + + IS G S G + + +
Sbjct: 93 HVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKR 152
Query: 84 LDPVYY---AQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIG 136
+ ++ EN+ G P +L + D ++ Y I+ P+ F I+
Sbjct: 153 KKRDWVIPPIKVSENERGPFP-KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 211
Query: 137 SGSL 140
+G +
Sbjct: 212 TGWM 215
Score = 39.1 bits (91), Expect = 2e-04
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 67 LIVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI-LPIVQLAASDGDLDPDQRISYKISAG 125
+V +V+ P Y + + + ++ S D + Y +
Sbjct: 21 QVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFS--DCTTRKHGLYDVG-- 76
Query: 126 NPESYFNID 134
+S F +
Sbjct: 77 --DSRFRVL 83
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 62.3 bits (152), Expect = 2e-12
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 40/170 (23%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGS---- 56
P E +VQ+ + D ++ Y I+ P+ F I+ +
Sbjct: 11 PPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWML 67
Query: 57 --------------------DLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQ 96
G P + + + I V + NDN P V+ + E
Sbjct: 68 VTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGV 127
Query: 97 SGILPIVQLAASDGDLDPDQ----RISYKISAGNPES----YFNIDIGSG 138
++ ++A+D D D +SY I +PE F I+ +G
Sbjct: 128 QPGTQVMAVSATDED-DNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 176
Score = 59.6 bits (145), Expect = 1e-11
Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 37/167 (22%)
Query: 7 YYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNIDIGSD------- 57
Y A + EN+ G + +L+ +D D+ P + YKI N +FNI +
Sbjct: 232 YTALVPENEIGF-EVQRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGILT 289
Query: 58 ------------------------LTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIV 93
+ V + V++VN+ P + V +
Sbjct: 290 TAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVS 348
Query: 94 ENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
E+ S I+ L A D D Q++SY I +P + ++ +G +
Sbjct: 349 EDLSRGEKIISLVAQDPDKQQIQKLSYFIG-NDPARWLTVNKDNGIV 394
Score = 56.5 bits (137), Expect = 2e-10
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 35/165 (21%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS-------- 56
V + E+ S I+ L A D D Q++SY I +P + ++ +
Sbjct: 341 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG-NDPARWLTVNKDNGIVTGNGN 399
Query: 57 ---DLTGGPDQVYLI-----------------VYIQVQNVNDNVPMTLDPVYYAQIVENQ 96
+ + Y + + + V +VNDN P P + +N
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP-VPSPRVFTMCDQNP 458
Query: 97 SGILPIVQLAASDGDLDPD-QRISYKISAGNPESYFNIDIGSGSL 140
L SD D+ P+ +S G+ ++ G+
Sbjct: 459 EP----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 499
Score = 55.8 bits (135), Expect = 3e-10
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 38/165 (23%)
Query: 4 DPVYYAQIVENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPES----YFNID-- 53
V+ + E ++ ++A+D D D +SY I +PE F I+
Sbjct: 116 QDVFRGSVREGVQPGTQVMAVSATDED-DNIDSLNGVLSYSILKQDPEEPIPNLFTINRE 174
Query: 54 -----------------------IGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYA 90
+DL G V IQ+ + NDN P+ Y A
Sbjct: 175 TGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTA 234
Query: 91 QIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI 133
+ EN+ G + +L+ +D D+ P + YKI N +FNI
Sbjct: 235 LVPENEIGF-EVQRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNI 277
Score = 33.8 bits (78), Expect = 0.012
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 86 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGSL 140
P E +VQ+ + D ++ Y I+ P+ F I+ +G +
Sbjct: 11 PPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWM 66
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 60.0 bits (146), Expect = 8e-12
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 35/165 (21%)
Query: 5 PVY-YAQIVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS------ 56
V+ ++E SG P +V +D D ++I Y +S + F I+ +
Sbjct: 2 WVWNQMFVLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDIHAI 60
Query: 57 ------------------DLTGGPDQV-YLIVYIQVQNVNDNVPMTLDPVYYAQIVENQS 97
D I+VQ++NDN P L+ Y+A + E
Sbjct: 61 KRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSI 120
Query: 98 GILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSG 138
+ + A+D D DP ++ Y I G P YF+I+ +
Sbjct: 121 LGTSVTNVTATDAD-DPVYGNSAKLVYSILEGQP--YFSIEPETA 162
Score = 59.6 bits (145), Expect = 1e-11
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 34/168 (20%)
Query: 3 LDPVYYAQIVENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNID----- 53
L+ Y+A + E + + A+D D DP ++ Y I G P YF+I+
Sbjct: 107 LNGPYHATVPEMSILGTSVTNVTATDAD-DPVYGNSAKLVYSILEGQP--YFSIEPETAI 163
Query: 54 --------------------IGSDLTGGPDQVY--LIVYIQVQNVNDNVPMTLDPVYYAQ 91
D+ G + + + + +VNDN P +Y+
Sbjct: 164 IKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFS 223
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGS 139
+ E+ I ++ A+D D+ + + SY I G+ + F I + +
Sbjct: 224 VPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQA 271
Score = 35.7 bits (83), Expect = 0.002
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 86 PVY-YAQIVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
V+ ++E SG P +V +D D ++I Y +S + F I+ +G +
Sbjct: 2 WVWNQMFVLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDI 57
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 60.4 bits (147), Expect = 8e-12
Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 45/169 (26%)
Query: 10 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSDLTGGPDQVYLI- 68
++ + P ++ ++ D D + + +++ + F I + +
Sbjct: 3 RVTRA---VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 69 -------------------------------------VYIQVQNVNDNVPM-TLDPVYY- 89
V I V++VND P P+
Sbjct: 60 KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ 119
Query: 90 AQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSG 138
A + N P+ L A D D D I Y I F +D SG
Sbjct: 120 AVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDERSG 166
Score = 55.8 bits (135), Expect = 3e-10
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 35/158 (22%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGS------- 56
P Y A+I ENQ I+ + A D+ I Y + A G FNI S
Sbjct: 222 PSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAK 278
Query: 57 -------------DLT-----GGPDQV-YLIVYIQVQNVNDNVPMTLDPVYYAQIV-ENQ 96
L + + I+V +VNDN P P Y A V E+
Sbjct: 279 ELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDI 338
Query: 97 SGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNID 134
I+++ A D D + I Y +S + +F +D
Sbjct: 339 PLGTSILRVKAMDSDSGSNAEIEYLVS----DDHFAVD 372
Score = 52.7 bits (127), Expect = 4e-09
Identities = 34/163 (20%), Positives = 46/163 (28%), Gaps = 35/163 (21%)
Query: 7 YYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNI-------------- 52
A + N P+ L A D D D I Y I F +
Sbjct: 118 MQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDERSGVVRTRGTDL 175
Query: 53 --------------DIGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSG 98
D + Q + + P P Y A+I ENQ
Sbjct: 176 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSI-VGGKRAPQFYMPSYEAEIPENQKK 234
Query: 99 ILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSGSL 140
I+ + A D+ I Y + A G FNI SG +
Sbjct: 235 DSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIV 274
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 58.5 bits (142), Expect = 3e-11
Identities = 34/163 (20%), Positives = 46/163 (28%), Gaps = 35/163 (21%)
Query: 7 YYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNI-------------- 52
A + N P+ L A D D D I Y I F +
Sbjct: 113 MQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDERSGVVRTRGTDL 170
Query: 53 --------------DIGSDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPVYYAQIVENQSG 98
D + Q + + P P Y A+I ENQ
Sbjct: 171 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKK 229
Query: 99 ILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSGSL 140
I+ + A D+ I Y + A G FNI SG +
Sbjct: 230 DSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIV 269
Score = 55.5 bits (134), Expect = 3e-10
Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 42/165 (25%)
Query: 16 SGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIG-------------------- 55
S + P ++ ++ D D + + +++ + F I
Sbjct: 1 SAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDY 60
Query: 56 ------------------SDLTGGPDQVYLIVYIQVQNVNDNVPMTLDPV--YYAQIVEN 95
G V I V++VND P ++ A + N
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLN 120
Query: 96 QSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
P+ L A D D D I Y I F +D SG +
Sbjct: 121 APPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDERSGVV 163
Score = 37.7 bits (88), Expect = 5e-04
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 30/102 (29%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGS------- 56
P Y A+I ENQ I+ + A D+ I Y + A G FNI S
Sbjct: 217 PSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAK 273
Query: 57 -------------DLT------GGPDQVYLIVYIQVQNVNDN 79
L G + + I+V +VNDN
Sbjct: 274 ELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDN 315
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 53.8 bits (129), Expect = 1e-09
Identities = 21/191 (10%), Positives = 46/191 (24%), Gaps = 56/191 (29%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKI-----SAGNPESYFNID---- 53
Y+ ++ +Q+ P++ + A + P R+ + + + ++ I
Sbjct: 6 DAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTG 65
Query: 54 ----------------------------------IGSDLTGGPDQVYLIVYIQVQNVNDN 79
+ L G Q + N +
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 80 VPMTLD----------PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPES 129
P +I EN+ L P ++Y++ G
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP 185
Query: 130 YFNIDIGSGSL 140
F S +
Sbjct: 186 -FRSAPDSLEV 195
Score = 36.8 bits (85), Expect = 9e-04
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 26/102 (25%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNID----------- 53
+I EN+ L P ++Y++ G F
Sbjct: 142 TRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP-FRSAPDSLEVSTRWA 200
Query: 54 -------------IGSDLTGGPDQ-VYLIVYIQVQNVNDNVP 81
+ + G ++ V + + V + +D+ P
Sbjct: 201 LDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAP 242
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 44.8 bits (107), Expect = 4e-07
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 71 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE-- 128
+ NDN P VY A + EN + PI+QL A+D D+ + +I Y A
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 129 SYFNIDIGSG 138
+D SG
Sbjct: 62 RLLRLDETSG 71
Score = 34.8 bits (81), Expect = 0.002
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 26/103 (25%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE--SYFNIDIGS---DLT 59
VY A + EN + PI+QL A+D D+ + +I Y A +D S +
Sbjct: 17 SVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVL 76
Query: 60 GGPD----QVYLI-----------------VYIQVQNVNDNVP 81
D V + +++ NDNVP
Sbjct: 77 HRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 42.7 bits (101), Expect = 2e-06
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 91 QIVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
I ENQ P + ++ SD ++ K P+ F I+ SG +
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEV 59
Score = 40.4 bits (95), Expect = 1e-05
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 10 QIVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNID 53
I ENQ P + ++ SD ++ K P+ F I+
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKIN 53
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 42.0 bits (99), Expect = 4e-06
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 92 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
I ENQ P + ++ S+G R+S K +P+ F I+ SG +
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDV 59
Score = 39.7 bits (93), Expect = 2e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 11 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNID 53
I ENQ P + ++ S+G R+S K +P+ F I+
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRIN 53
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 41.9 bits (99), Expect = 4e-06
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 29/100 (29%)
Query: 10 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGS--------- 56
+ EN G P +L D + + Y ++ P F I+ S
Sbjct: 10 NLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 57 ---------------DLTGGPDQVYLIVYIQVQNVNDNVP 81
D+ G + + + I V ++NDN P
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 108
Score = 37.6 bits (88), Expect = 2e-04
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 91 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGSL 140
+ EN G P +L D + + Y ++ P F I+ SG L
Sbjct: 10 NLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQL 62
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 41.6 bits (98), Expect = 6e-06
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 92 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
I ENQ P + ++ SD R++ K +P+ F I+ +GS+
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSV 60
Score = 38.9 bits (91), Expect = 5e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 11 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNID 53
I ENQ P + ++ SD R++ K +P+ F I+
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRIN 54
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 40.9 bits (97), Expect = 1e-05
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 71 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPES- 129
+ NDN P+ + I EN ++QL A+D D+ + I Y A +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 130 --YFNIDIGSG 138
F ++ +G
Sbjct: 62 KRLFALNNTTG 72
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 38.1 bits (89), Expect = 2e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 31/101 (30%)
Query: 11 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAG----NPESYFNIDIGS-------- 56
+ E + I ++ SD + +I+YK + P F + +
Sbjct: 19 LREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSI 77
Query: 57 ----------------DLTGGPDQVYLIVYIQVQNVNDNVP 81
D G + L + I+V ++NDN P
Sbjct: 78 LDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEP 118
Score = 32.7 bits (75), Expect = 0.013
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 92 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAG----NPESYFNIDIGSGSL 140
+ E + I ++ SD + +I+YK + P F + +G L
Sbjct: 19 LREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGEL 72
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 36.2 bits (84), Expect = 4e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 92 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
++E +G P V SD D D I Y +S F ID +G +
Sbjct: 10 VLEEYTGTDPLYVGKLHSDMD-RGDGSIKYILSGEGAGIVFTIDDTTGDI 58
Score = 34.7 bits (80), Expect = 0.002
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 11 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNID 53
++E +G P V SD D D I Y +S F ID
Sbjct: 10 VLEEYTGTDPLYVGKLHSDMD-RGDGSIKYILSGEGAGIVFTID 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 6e-04
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 31/95 (32%)
Query: 16 SGILPI---VQLAASDGDL-------DPDQRISYKISAGNPESYFNIDIGSDLTGGPDQV 65
+ ++ I V++ G D R +Y + A NP + + + +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-----VA--ASFSQEAL 1826
Query: 66 YLIV-YIQ------VQNVNDNVPMTLDPVYYAQIV 93
+V + V+ VN NV Q V
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVE-------NQQYV 1854
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 25/57 (43%)
Query: 7 YY-AQIVENQ-------SGILPIVQLAASDGDLDPDQRISYKISA-----GNPESYF 50
Y A+I+ + S + A +G+ ++ A GN + YF
Sbjct: 126 YITARIMAKRPFDKKSNSALFR----AVGEGN--------AQLVAIFGGQGNTDDYF 170
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 25/57 (43%)
Query: 88 YY-AQIVENQ-------SGILPIVQLAASDGDLDPDQRISYKISA-----GNPESYF 131
Y A+I+ + S + A +G+ ++ A GN + YF
Sbjct: 126 YITARIMAKRPFDKKSNSALFR----AVGEGN--------AQLVAIFGGQGNTDDYF 170
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 35.9 bits (83), Expect = 7e-04
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 92 IVENQSGILPI-VQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSL 140
++E SG PI V +D D ++I Y +S + F I+ +G +
Sbjct: 9 VLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDI 57
Score = 34.3 bits (79), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 11 IVENQSGILPI-VQLAASDGDLDPDQRISYKISAGNPESYFNID 53
++E SG PI V +D D ++I Y +S + F I+
Sbjct: 9 VLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQIN 51
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 86 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGSL 140
+ EN+ G P L + D + ++ Y I+ P F I+ +G L
Sbjct: 7 VIPPISCPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWL 64
Score = 33.5 bits (77), Expect = 0.005
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNID 53
+ EN+ G P L + D + ++ Y I+ P F I+
Sbjct: 7 VIPPISCPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIE 58
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 25.4 bits (56), Expect = 7.6
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 94 ENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGSLG 141
+ +V + + P + + NP + +I++G+ LG
Sbjct: 27 SENKKVENLVLDDNDENTIIPYYLSNLLTNPSNPVVFMDINLGNNFLG 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.138 0.391
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,266,116
Number of extensions: 130457
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 97
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.8 bits)