RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11815
(141 letters)
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 32.4 bits (73), Expect = 0.005
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSG 138
+ EN+ G P +L + D ++ Y I+ P+ F I+ +G
Sbjct: 9 VSENERGPFP-KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 58
Score = 30.9 bits (69), Expect = 0.016
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNID 53
+ EN+ G P +L + D ++ Y I+ P+ F I+
Sbjct: 9 VSENERGPFP-KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIE 54
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 32.0 bits (72), Expect = 0.008
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISA----GNPESYFNIDIGSG 138
EN+ G P L + D + ++ Y I+ P F I+ +G
Sbjct: 12 CPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETG 61
Score = 30.5 bits (68), Expect = 0.030
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISA----GNPESYFNID 53
EN+ G P L + D + ++ Y I+ P F I+
Sbjct: 12 CPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIE 57
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 30.5 bits (67), Expect = 0.029
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 77 NDNVPMTLDPVYYAQIVENQSGILPIVQLAA---SDGDLDPDQRISYKISAGNPESYFN 132
NDN P V+ + E +++++A D + I+Y I + +PE
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 59
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 30.4 bits (67), Expect = 0.035
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 77 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNI 133
NDN P+ Y A + EN+ G + N +FNI
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 58
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 28.9 bits (63), Expect = 0.12
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 77 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNP----ESY 130
NDN P L V+ + E ++ + A D D + + Y+I + P +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 131 FNID 134
F I+
Sbjct: 61 FTIN 64
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 27.9 bits (61), Expect = 0.19
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 92 IVENQSGILPIVQLAASDGDLDPDQRISYKISA----GNPESYFNIDIGSG 138
+ EN G P +L D + + Y ++ P F I+ SG
Sbjct: 11 LPENSRGPFP-QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISG 60
Score = 26.7 bits (58), Expect = 0.53
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 11 IVENQSGILPIVQLAASDGDLDPDQRISYKISA----GNPESYFNID 53
+ EN G P +L D + + Y ++ P F I+
Sbjct: 11 LPENSRGPFP-QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIIN 56
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 26.9 bits (58), Expect = 0.57
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 77 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASD---GDLDPDQRISYKISAGNPE 128
NDN P V+ + E ++ ++A+D + +SY I +PE
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE 56
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 26.9 bits (58), Expect = 0.59
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 76 VNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISY 120
+ + VY A + ++ P++ + S+ + +
Sbjct: 6 IALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYES 50
Score = 26.1 bits (56), Expect = 1.2
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 16/94 (17%)
Query: 5 PVYYAQIVENQSGILPIVQLAASDGDLDPDQR----------------ISYKISAGNPES 48
VY A + ++ P++ + S+ + + + S
Sbjct: 16 DVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVYAVRSFPLTAE 75
Query: 49 YFNIDIGSDLTGGPDQVYLIVYIQVQNVNDNVPM 82
I + ++ + V + + PM
Sbjct: 76 QAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPM 109
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 25.2 bits (54), Expect = 2.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 125 GNPESYFNIDIGSGSLG 141
GNP Y ++D LG
Sbjct: 1 GNPLVYLDVDANGKPLG 17
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 23.8 bits (50), Expect = 5.8
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 78 DNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS 137
+ P + V + E+ S I+ L A D D Q++SY +P + ++ +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPARWLTVNKDN 59
Query: 138 GSL 140
G +
Sbjct: 60 GIV 62
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM
{Vibrio cholerae [TaxId: 666]}
Length = 80
Score = 23.1 bits (50), Expect = 8.1
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 66 YLIVYIQVQNVNDNVPMTLDPVYYAQIV------ENQSGILPIVQLAASDGD 111
+ I I+VQ + + + + P+ ++Q+V + + G+ + + G
Sbjct: 14 FNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVS-VDAIDIDRGK 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.138 0.391
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,491
Number of extensions: 24573
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 25
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.9 bits)