Query psy11816
Match_columns 209
No_of_seqs 139 out of 615
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:43:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxr_A Mitochondrial import in 99.9 7.3E-25 2.5E-29 164.7 6.5 81 59-139 1-86 (89)
2 3cjh_B Mitochondrial import in 99.9 9.6E-22 3.3E-26 139.2 7.2 58 75-132 2-63 (64)
3 3dxr_B Mitochondrial import in 99.8 1.1E-21 3.6E-26 150.1 6.6 63 75-137 23-90 (95)
4 2bsk_B Mitochondrial import in 99.8 2.2E-21 7.5E-26 145.7 6.7 64 75-138 10-78 (90)
5 3cjh_A Mitochondrial import in 99.8 1.3E-21 4.3E-26 139.5 5.0 62 79-140 1-62 (64)
6 2bsk_A Mitochondrial import in 99.8 4.2E-20 1.4E-24 139.0 7.3 63 76-138 10-76 (89)
7 2jxc_B Stonin-2, stoned B; end 40.5 12 0.00042 25.0 1.6 20 31-51 5-24 (45)
8 3lay_A Zinc resistance-associa 28.3 33 0.0011 28.2 2.6 24 55-78 59-82 (175)
9 1ter_A Tertiapin; toxin; NMR { 28.2 16 0.00055 21.8 0.5 8 92-99 12-19 (26)
10 1vcs_A Vesicle transport throu 23.5 94 0.0032 22.9 4.1 68 61-134 28-95 (102)
11 1x91_A Invertase/pectin methyl 23.0 1.1E+02 0.0038 22.4 4.5 54 76-134 42-95 (153)
12 1zbd_B Rabphilin-3A; G protein 22.9 84 0.0029 24.5 3.9 21 55-75 1-21 (134)
13 3fgx_A Rbstp2171; structural g 22.6 33 0.0011 26.9 1.5 54 37-91 37-100 (114)
14 2oo3_A Protein involved in cat 21.4 29 0.001 30.4 1.1 18 34-57 32-49 (283)
No 1
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.3e-25 Score=164.70 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=60.6
Q ss_pred hhhcCCCCCChHHHHHHH-HhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816 59 ADLAIMFADSRPESTFWI-FGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLL 133 (209)
Q Consensus 59 ~dL~~Ls~dqq~EL~q~~-EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~ 133 (209)
+|+++|++.+++++++++ |.|+++++++||+||++||+||| +++|+++|++||+|||+||||++++|++||++.+
T Consensus 1 ~~m~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 80 (89)
T 3dxr_A 1 GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN 80 (89)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999875 56999999999999999999999 8999999999999999999999999999999988
Q ss_pred hccccC
Q psy11816 134 SKSMEG 139 (209)
Q Consensus 134 qqe~~g 139 (209)
++.++.
T Consensus 81 ~~~~~~ 86 (89)
T 3dxr_A 81 AALGQG 86 (89)
T ss_dssp CC----
T ss_pred HHHhhc
Confidence 776644
No 2
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.6e-22 Score=139.19 Aligned_cols=58 Identities=31% Similarity=0.641 Sum_probs=53.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816 75 WIFGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132 (209)
Q Consensus 75 ~~EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~ 132 (209)
++|+|+++++++||+||+.||+||| +++|+++|++||+|||+||||++++|++||+++
T Consensus 2 ~~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 2 EGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999 889999999999999999999999999999975
No 3
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-21 Score=150.10 Aligned_cols=63 Identities=11% Similarity=0.360 Sum_probs=56.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11816 75 WIFGKPTYIETHMFEFNDICWDKCQ-----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM 137 (209)
Q Consensus 75 ~~EqQ~aq~QelvnkLTE~CFdKCV-----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~ 137 (209)
++|+|+++++++||+||++||+||| +++|+++|++||+|||+||||++++|++||+++.++.+
T Consensus 23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~~~ 90 (95)
T 3dxr_B 23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFN 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999 68999999999999999999999999999999998876
No 4
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.84 E-value=2.2e-21 Score=145.66 Aligned_cols=64 Identities=16% Similarity=0.345 Sum_probs=57.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy11816 75 WIFGKPTYIETHMFEFNDICWDKCQ-----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSME 138 (209)
Q Consensus 75 ~~EqQ~aq~QelvnkLTE~CFdKCV-----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~~ 138 (209)
.+|.|+++++++||+||+.||+||| +++|+++|++||+|||+||||++++|++||+++.++...
T Consensus 10 ~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~e 78 (90)
T 2bsk_B 10 AAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDEE 78 (90)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999 788999999999999999999999999999999876643
No 5
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-21 Score=139.52 Aligned_cols=62 Identities=11% Similarity=0.406 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy11816 79 KPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGE 140 (209)
Q Consensus 79 Q~aq~QelvnkLTE~CFdKCVsssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~~g~ 140 (209)
++++++++||+||+.||+|||.+.|+++|++||+|||+||||++++|+++|++++++++.+|
T Consensus 1 ~~a~~~~l~~~lt~~Cf~kCv~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~~~~~ 62 (64)
T 3cjh_A 1 AVANATELVNKISENCFEKCLTSPYATRNDACIDQCLAKYMRSWNVISKAYISRIQNASASG 62 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 57899999999999999999944499999999999999999999999999999999887654
No 6
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.81 E-value=4.2e-20 Score=138.97 Aligned_cols=63 Identities=14% Similarity=0.379 Sum_probs=56.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy11816 76 IFGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSME 138 (209)
Q Consensus 76 ~EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~~ 138 (209)
+.+++++++++||+||++||+||| +++|+++|++||+|||+||||++++|++||++..++..+
T Consensus 10 q~~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~~ 76 (89)
T 2bsk_A 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNE 76 (89)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999 889999999999999999999999999999999876544
No 7
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=40.47 E-value=12 Score=25.05 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=15.1
Q ss_pred cCCCCCCCccccCCCceeecc
Q psy11816 31 PHSRPESTFWIFGKPTYIDTH 51 (209)
Q Consensus 31 ~~~~p~s~~w~~~~p~y~~~~ 51 (209)
+-|-|+++-|+++|| +|+++
T Consensus 5 ~p~~~e~~Pw~atNP-FLde~ 24 (45)
T 2jxc_B 5 SPSVTEASPWRATNP-FLNET 24 (45)
T ss_dssp -CCCSCCCCSCSSCS-SSSTT
T ss_pred CCccccCCCcccCCc-chhhh
Confidence 457899999999999 44443
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.28 E-value=33 Score=28.16 Aligned_cols=24 Identities=0% Similarity=-0.134 Sum_probs=11.8
Q ss_pred ccChhhhcCCCCCChHHHHHHHHh
Q psy11816 55 AIMFADLAIMFADSRPESTFWIFG 78 (209)
Q Consensus 55 gld~~dL~~Ls~dqq~EL~q~~Eq 78 (209)
|+......+||++||+++....+.
T Consensus 59 gm~~q~~LnLT~EQq~ql~~I~~e 82 (175)
T 3lay_A 59 GMWQQGGSPLTTEQQATAQKIYDD 82 (175)
T ss_dssp ---------CCHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHHHHH
Confidence 455555567999999998775443
No 9
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=28.20 E-value=16 Score=21.84 Aligned_cols=8 Identities=50% Similarity=1.780 Sum_probs=6.3
Q ss_pred HHHHHhcc
Q psy11816 92 DICWDKCQ 99 (209)
Q Consensus 92 E~CFdKCV 99 (209)
..||+||-
T Consensus 12 hmcwkkcg 19 (26)
T 1ter_A 12 HMCWKKCG 19 (26)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHhC
Confidence 46999994
No 10
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.51 E-value=94 Score=22.86 Aligned_cols=68 Identities=3% Similarity=-0.025 Sum_probs=44.8
Q ss_pred hcCCCCCChHHHHHHHHhcHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11816 61 LAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLS 134 (209)
Q Consensus 61 L~~Ls~dqq~EL~q~~EqQ~aq~QelvnkLTE~CFdKCVsssLsskEesCLsNCVdKFmDts~~VsqRfqe~~q 134 (209)
+..++.++|.+....+|..+.++.+++.+|--- -..+.+....=+.+=+.-|=.-...+-..|.+...
T Consensus 28 i~~~~geerk~~i~~ie~~l~EA~ell~qMelE------~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 28 VPRLPPDEKKQMVANVEKQLEEARELLEQMDLE------VREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp GGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH------HTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778899999888999999999999987532 24455666665555555555555555555544333
No 11
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=22.95 E-value=1.1e+02 Score=22.44 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11816 76 IFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLS 134 (209)
Q Consensus 76 ~EqQ~aq~QelvnkLTE~CFdKCVsssLsskEesCLsNCVdKFmDts~~VsqRfqe~~q 134 (209)
+...++++......+... .++ . -+..++.++..|.+-|-++-..+.+.+.+...
T Consensus 42 ~~~~~~~a~~~~~~~~~l-~~~---~-~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 95 (153)
T 1x91_A 42 LDSTQARATQTLKKLQSI-IDG---G-VDPRSKLAYRSCVDEYESAIGNLEEAFEHLAS 95 (153)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHH---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-Hhc---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555554444444333 122 1 27889999999999999999999888776653
No 12
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.85 E-value=84 Score=24.49 Aligned_cols=21 Identities=0% Similarity=-0.152 Sum_probs=11.9
Q ss_pred ccChhhhcCCCCCChHHHHHH
Q psy11816 55 AIMFADLAIMFADSRPESTFW 75 (209)
Q Consensus 55 gld~~dL~~Ls~dqq~EL~q~ 75 (209)
|....|+..|++++++.+.+.
T Consensus 1 ~~~~~dls~LteeE~~~Il~V 21 (134)
T 1zbd_B 1 GSHMRKQEELTDEEKEIINRV 21 (134)
T ss_dssp -------CCCCSSHHHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHH
Confidence 345689999999999877664
No 13
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=22.58 E-value=33 Score=26.93 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=37.8
Q ss_pred CCccccCCCc------eeecccccccChhh----hcCCCCCChHHHHHHHHhcHHHHHHHHHHHH
Q psy11816 37 STFWIFGKPT------YIDTHADLAIMFAD----LAIMFADSRPESTFWIFGKPTYIETHMFEFN 91 (209)
Q Consensus 37 s~~w~~~~p~------y~~~~~~~gld~~d----L~~Ls~dqq~EL~q~~EqQ~aq~QelvnkLT 91 (209)
+=.++|++|| ||.+-+- +..++. ++...++++.++....|.--..+.++.++|.
T Consensus 37 ~~~y~Fk~Pt~~~YnRyi~t~a~-~~~aAakNflmd~V~~E~KeaL~ellEE~PGaalqia~~Li 100 (114)
T 3fgx_A 37 EFVFYFTRPKVSDISRFTKELNS-KPDMAMKNLTFSCIVPEQEEELRQAAEEFPGLTFNTASRLM 100 (114)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHH-CHHHHHHHHHHTTBCGGGHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred eEEEEecCCCHHHHHHHHHHHhc-chhHHHHHHHHHhcCcccHHHHHHHHHHCccHHHHHHHHHH
Confidence 4457899997 7887777 666665 7788899999998887654444444444443
No 14
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=21.38 E-value=29 Score=30.42 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=13.7
Q ss_pred CCCCCccccCCCceeecccccccC
Q psy11816 34 RPESTFWIFGKPTYIDTHADLAIM 57 (209)
Q Consensus 34 ~p~s~~w~~~~p~y~~~~~~~gld 57 (209)
+-++||| |||||++.|+=
T Consensus 32 ~K~kp~~------~iDTHAG~G~Y 49 (283)
T 2oo3_A 32 HKDKPLF------YLETHSGRGIY 49 (283)
T ss_dssp TSSSCCE------EEESCCTTSEE
T ss_pred cCCCCeE------EEEcCCCcCcc
Confidence 4556665 99999999864
Done!