RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11816
         (209 letters)



>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger.  Putative
           zinc binding domain with four conserved cysteine
           residues. This domain is found in the human disease
           protein TIMM8A. Members of this family such as Tim9 and
           Tim10 are involved in mitochondrial protein import.
           Members of this family seem to be localised to the
           mitochondrial intermembrane space.
          Length = 66

 Score = 58.4 bits (142), Expect = 5e-12
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 90  FNDICWDKC----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132
             + C+ KC        +    E+CL  CV +++D +  ++ R  + 
Sbjct: 20  LTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVSKRLQER 66


>gnl|CDD|202956 pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain. 
          Length = 75

 Score = 25.2 bits (56), Expect = 7.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 1  MFAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPE 36
          M  G GI+F  L +++  +++MS  +    P   P 
Sbjct: 8  MVLGMGIVFLFLILLILLISLMSKLVNKFAPEEPPA 43


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,436,135
Number of extensions: 931381
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 912
Number of HSP's successfully gapped: 7
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.9 bits)