RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11816
(209 letters)
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 67.2 bits (164), Expect = 2e-15
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 89 EFNDICWDKC----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132
+F +IC+ KC + S+ E CL+NCVNRF+D ++ I N
Sbjct: 16 QFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 45.2 bits (107), Expect = 3e-07
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 90 FNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM 137
++ C++KC + ++ + C+ C+ +++ I+ Y + +
Sbjct: 12 ISENCFEKCLTSPYATRNDACIDQCLAKYMRSWNVISKAYISRIQNAS 59
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Length = 89
Score = 44.6 bits (105), Expect = 8e-07
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 92 DICWDKCQSD----KVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEG 139
+ C+ C +D K+ +K +TC+ C +F+ S + R+ + + +G
Sbjct: 35 ERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAALGQG 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 74/202 (36%)
Query: 13 AIMVADLAIMSAD------------LAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFAD 60
++ A +AI D + ++F +I G A + +
Sbjct: 276 GLVTA-VAIAETDSWESFFVSVRKAITVLF---------FI-G------VRCYEA--YPN 316
Query: 61 LAI---MFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNR 117
++ + DS + G P+ M +++ + Q +KT + L +
Sbjct: 317 TSLPPSILEDSLENN----EGVPSP----MLSISNL--TQEQVQDYVNKTNSHLPA--GK 364
Query: 118 FIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYS 177
+++SL N G + V V+ PP L + LTLR +
Sbjct: 365 QVEISLV--N-----------GAKNLV-----VS---GPPQSLYG----LNLTLRKAKAP 399
Query: 178 PGI---AFKHAQKSTKFQNEFL 196
G+ +++ KF N FL
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFL 421
Score = 35.0 bits (80), Expect = 0.018
Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 58/155 (37%)
Query: 10 ADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTH--ADLAIMFADLAIMFAD 67
DL +++ + D+ I P Y DT +DL ++ ++ D
Sbjct: 441 KDLV--KNNVSFNAKDIQI----------------PVY-DTFDGSDLRVLSGSISERIVD 481
Query: 68 SRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLF--- 124
I P W+ K +D F
Sbjct: 482 -------CIIRLPVK------------WETTTQFKA------------THILD---FGPG 507
Query: 125 ITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPG 159
+ G L ++ +G RV + + G
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 26.6 bits (58), Expect = 8.2
Identities = 27/212 (12%), Positives = 64/212 (30%), Gaps = 72/212 (33%)
Query: 13 AIMVADLAIMSADLAIMFPHSRPEST--FWIFG----KPTYIDTHADLAIMFADLAIMFA 66
A ++A + +F + IFG Y F +L ++
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----------FEELRDLYQ 178
Query: 67 DSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFIT 126
I+ +++ ++KV ++ +++ ++
Sbjct: 179 TYHV------LVGD-LIKFSAETLSELIRTTLDAEKVFTQG-----------LNILEWLE 220
Query: 127 NR-------YGQLLSKSMEGERARVTCCAHVTTKNNPPPGL-Q-SHVKSVRLTLRMTEYS 177
N Y LLS ++C P G+ Q +H +T ++ ++
Sbjct: 221 NPSNTPDKDY--LLS-------IPISC---------PLIGVIQLAHY---VVTAKLLGFT 259
Query: 178 PGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV 209
PG + + +T + ++ V +
Sbjct: 260 PGELRSYLKGATG--------HSQGLVTAVAI 283
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 90
Score = 41.2 bits (96), Expect = 2e-05
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 85 THMF-EFNDICWDKC-----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132
M+ C KC + ++ CL CV++++D+ + + +L
Sbjct: 19 ADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL 72
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Length = 95
Score = 38.8 bits (90), Expect = 1e-04
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 92 DICWDKCQSDKVDSKT-----ETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGER 141
+ C+ KC + +CL CV ++ + ++ + ++ +
Sbjct: 40 NNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFNAAGK 94
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 89
Score = 36.9 bits (85), Expect = 5e-04
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 DICWDKCQSD----KVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEG 139
+ C+ C D +V + TC +C+ +++ ++ I+ R+ + + E
Sbjct: 26 ETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEA 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.53
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 161 QSHVKSVRLTLRMTEYSPGIAFKHAQKST 189
Q+ +K +L + Y+ A A K+T
Sbjct: 20 QA-LK--KLQASLKLYADDSAPALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.55
Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 51/159 (32%)
Query: 57 MFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVN 116
MF L++ F P S +I T + + W D + S +
Sbjct: 374 MFDRLSV-F----PPSA--------HIPTILLS---LIW----FDVIKSDVMVVVNKLHK 413
Query: 117 RFI------DVSLFITNRYGQLLSKSMEGERARVTCCAH--VTTKNNPPPGLQSHVKSVR 168
+ + ++ I + Y L +E E A H + N P S
Sbjct: 414 YSLVEKQPKESTISIPSIY-LELKVKLENEYA-----LHRSIVDHYNIPKTFDSDDLI-- 465
Query: 169 LTLRMTEYSPGIAFKH----------AQKSTKFQNEFLD 197
+ +Y + H ++ T F+ FLD
Sbjct: 466 -PPYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLD 499
Score = 29.8 bits (66), Expect = 0.66
Identities = 30/229 (13%), Positives = 65/229 (28%), Gaps = 62/229 (27%)
Query: 8 MFADLAIMVADLAIMSADLAIMFPHSRPESTFWIF------------GKPTYI---DTHA 52
MF L++ I + L++++ + K + I +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 53 DLAIMFADLAIM---FADS-RPESTF--WIFGKP-------TYIETHMF---------EF 90
+L + + + D TF P ++I H+ F
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 91 NDICWD------KCQSDKVDSKTETCLTNCVNRFIDVSLFIT---NRYGQLLSKSMEGER 141
+ D K + D + N + + +I +Y +L++ ++
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--- 550
Query: 142 ARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYSPGI---AFKHAQK 187
+ + + +R+ L M E I A K Q+
Sbjct: 551 -FLPKIEENLICS-------KYTDLLRIAL-MAEDE-AIFEEAHKQVQR 589
Score = 28.7 bits (63), Expect = 1.9
Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 44/185 (23%)
Query: 50 THADLAIMFAD-LAIMFADSRPE----STFWI--FGKPTYIETHMFEFNDICWDKCQSDK 102
T ++ + L D E + + + ++ W DK
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDK 354
Query: 103 VDSKTETCLTNCVN------RFIDVSLF-----ITNRYGQLLS------KSMEGERARVT 145
+ + E+ L N + F +S+F I LLS +
Sbjct: 355 LTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNK 410
Query: 146 CCAHVTTKNNPPPGLQS-HVKSVRLTLRMTEYSPGIAFKHAQ-------KSTKFQNEFLD 197
+ + P S + L + H T ++ +
Sbjct: 411 LHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 198 PSLKN 202
P L
Sbjct: 467 PYLDQ 471
>1avw_B STI, trypsin inhibitor; complex (proteinase/inhibitor), porcine
trypsin, soybean trypsin inhibitor, kunitz-type,
beta-trefoil fold; 1.75A {Glycine max} SCOP: b.42.4.1
PDB: 1avx_B 1avu_A 1ba7_A
Length = 177
Score = 28.5 bits (63), Expect = 1.3
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 38 TFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGK 79
+ +I L++ F A++ T W +
Sbjct: 57 IISSPYRIRFIAEGHPLSLKFDSFAVI-MLCVGIPTEWSVVE 97
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 37 STFWIFGKPTYIDTHADLA-IMFADLAIMFADSRPESTFWIFGK 79
+FGK + A +F F + P ST + G
Sbjct: 47 FKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGP 90
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 28.9 bits (63), Expect = 1.5
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 94 CWD-KCQSDKVDSKTETCLTNC-VNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVT 151
C + + + + L + VN ++S I +G L + ++V C +
Sbjct: 528 CMSLEVHPNSISVSDHSRLLSLVVNDAPNLSEGIACAFGNLTEVEGQVSGSQVICISPGP 587
Query: 152 TKNNPPPGLQSHVKSVRLTLRMTEYSPGIA 181
P Q + L LR E
Sbjct: 588 KDVPVIPLDQDWF-GLELQLRSKETGKIFV 616
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor,
beta-trefoil fold, hydrolase inhibitor; 1.83A
{Copaifera langsdorffii} SCOP: b.42.4.1
Length = 96
Score = 26.4 bits (58), Expect = 3.1
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 38 TFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGK 79
F + YI L I + + P+ + W
Sbjct: 58 RFKASPRSKYISVGMLLGIEVIE----SPECAPKPSMWSVKS 95
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Shigella flexneri 2A} SCOP: c.94.1.1
Length = 231
Score = 26.8 bits (59), Expect = 4.9
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 52 ADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTE--T 109
D+A++ A + G TY+ H + +DS++
Sbjct: 66 YDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQK 125
Query: 110 CLTNCVNRFIDVSLFITNRYGQLLSKSMEGE 140
+T+ DV + Y + L + ++G+
Sbjct: 126 IMTDVFFGDSDVE-RVDLSYHESLQRIVKGD 155
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha
hydroxylase, structural genomics, structural genomics
consortium, SGC, cholesterol metabolism; HET: HEM;
2.15A {Homo sapiens} PDB: 3sn5_A*
Length = 491
Score = 26.2 bits (58), Expect = 9.3
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 38 TFWIFGKPTYIDTHADLA--IMFADLAIMFADSRPESTFWIFGK 79
T + GK + T+ ++ + ++ FG
Sbjct: 51 TCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGH 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.136 0.424
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,172,348
Number of extensions: 175744
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 28
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.8 bits)