Query psy11818
Match_columns 331
No_of_seqs 152 out of 923
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:45:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpl_C Cullin-5; ubiquitin, NE 100.0 2.5E-54 8.6E-59 423.8 21.1 252 17-290 108-378 (382)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 2.3E-51 7.7E-56 433.5 20.2 247 16-289 500-755 (760)
3 2hye_C Cullin-4A, CUL-4A; beta 100.0 1.1E-50 3.7E-55 428.2 22.3 248 16-290 503-755 (759)
4 1iuy_A Cullin-3 homologue; win 99.9 7E-26 2.4E-30 179.4 1.9 82 208-289 6-87 (92)
5 3o2p_E Cell division control p 99.9 3.9E-25 1.3E-29 173.6 5.6 75 212-286 7-81 (88)
6 2do7_A Cullin-4B, CUL-4B; heli 99.9 2.1E-25 7.1E-30 179.3 2.7 88 199-289 3-90 (101)
7 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 4E-25 1.4E-29 169.5 4.0 72 219-290 2-73 (77)
8 3dpl_C Cullin-5; ubiquitin, NE 97.9 7.7E-06 2.6E-10 79.7 4.8 42 286-327 43-84 (382)
9 2hye_C Cullin-4A, CUL-4A; beta 97.4 9.1E-05 3.1E-09 78.1 5.2 42 287-328 441-482 (759)
10 1ldj_A Cullin homolog 1, CUL-1 97.4 0.0001 3.5E-09 77.7 4.9 41 287-327 438-478 (760)
11 2dk5_A DNA-directed RNA polyme 94.9 0.046 1.6E-06 42.3 5.9 53 117-173 14-68 (91)
12 3lmm_A Uncharacterized protein 93.4 0.039 1.3E-06 56.4 3.2 145 122-294 429-574 (583)
13 3cuo_A Uncharacterized HTH-typ 93.2 0.24 8.1E-06 37.3 6.8 49 122-174 23-71 (99)
14 1sfx_A Conserved hypothetical 92.3 0.16 5.4E-06 38.5 4.7 51 120-174 17-67 (109)
15 3tgn_A ADC operon repressor AD 92.1 0.26 8.8E-06 39.6 6.0 52 119-175 34-85 (146)
16 2jt1_A PEFI protein; solution 92.1 0.18 6.2E-06 37.8 4.6 41 136-180 23-63 (77)
17 1y0u_A Arsenical resistance op 92.1 0.41 1.4E-05 36.4 6.8 56 122-191 30-85 (96)
18 3jth_A Transcription activator 91.8 0.5 1.7E-05 35.8 7.0 49 122-175 22-70 (98)
19 2htj_A P fimbrial regulatory p 91.8 0.49 1.7E-05 34.9 6.7 44 127-174 4-47 (81)
20 3g3z_A NMB1585, transcriptiona 91.7 0.25 8.5E-06 39.8 5.4 51 121-175 29-79 (145)
21 3hsr_A HTH-type transcriptiona 91.6 0.23 7.7E-06 40.0 5.0 52 120-175 33-84 (140)
22 2d1h_A ST1889, 109AA long hypo 91.4 0.32 1.1E-05 36.8 5.5 51 121-175 19-70 (109)
23 3cdh_A Transcriptional regulat 91.4 0.41 1.4E-05 38.9 6.5 50 121-174 41-90 (155)
24 2gxg_A 146AA long hypothetical 91.1 0.48 1.6E-05 37.9 6.5 49 121-174 35-83 (146)
25 2fbh_A Transcriptional regulat 91.0 0.37 1.3E-05 38.5 5.8 52 120-175 34-86 (146)
26 2fu4_A Ferric uptake regulatio 90.9 0.31 1.1E-05 35.9 4.8 53 119-175 13-72 (83)
27 3ech_A MEXR, multidrug resista 90.6 0.21 7.2E-06 40.2 4.0 53 119-175 33-85 (142)
28 3bpv_A Transcriptional regulat 90.4 0.3 1E-05 38.7 4.7 51 120-174 26-76 (138)
29 3nrv_A Putative transcriptiona 90.4 0.35 1.2E-05 39.0 5.1 52 120-175 37-88 (148)
30 2xub_A DNA-directed RNA polyme 90.2 0.38 1.3E-05 48.4 6.2 134 131-287 27-164 (534)
31 3oop_A LIN2960 protein; protei 90.1 0.24 8.2E-06 39.8 3.8 52 120-175 34-85 (143)
32 3bro_A Transcriptional regulat 89.9 0.47 1.6E-05 37.7 5.4 51 121-175 32-84 (141)
33 1xn7_A Hypothetical protein YH 89.9 0.37 1.3E-05 36.1 4.4 44 127-174 6-49 (78)
34 1qgp_A Protein (double strande 89.9 0.48 1.6E-05 35.2 5.0 46 126-175 17-65 (77)
35 3bj6_A Transcriptional regulat 89.8 0.42 1.4E-05 38.6 5.2 51 121-175 38-88 (152)
36 2qww_A Transcriptional regulat 89.8 0.39 1.3E-05 38.9 5.0 50 120-173 38-87 (154)
37 3k0l_A Repressor protein; heli 89.7 0.35 1.2E-05 39.9 4.7 52 120-175 43-94 (162)
38 3r0a_A Putative transcriptiona 89.6 0.35 1.2E-05 38.8 4.5 52 119-174 22-75 (123)
39 3eco_A MEPR; mutlidrug efflux 89.6 0.39 1.3E-05 38.2 4.7 52 120-175 28-81 (139)
40 1jgs_A Multiple antibiotic res 89.6 0.4 1.4E-05 38.0 4.8 50 121-174 32-81 (138)
41 2nnn_A Probable transcriptiona 89.6 0.35 1.2E-05 38.3 4.4 51 120-174 35-85 (140)
42 1tbx_A ORF F-93, hypothetical 89.5 0.57 2E-05 35.5 5.5 51 120-174 5-59 (99)
43 3bdd_A Regulatory protein MARR 89.4 0.44 1.5E-05 37.8 4.9 51 120-174 28-78 (142)
44 2fa5_A Transcriptional regulat 89.3 0.47 1.6E-05 38.8 5.1 51 120-174 46-96 (162)
45 4hbl_A Transcriptional regulat 89.3 0.31 1.1E-05 39.6 4.0 52 120-175 38-89 (149)
46 2hr3_A Probable transcriptiona 89.1 0.5 1.7E-05 37.9 5.1 52 120-175 32-84 (147)
47 2v79_A DNA replication protein 89.0 0.44 1.5E-05 39.4 4.7 51 119-173 28-83 (135)
48 2pex_A Transcriptional regulat 88.9 0.45 1.5E-05 38.6 4.7 50 121-174 45-94 (153)
49 3pqk_A Biofilm growth-associat 88.9 1.3 4.5E-05 33.7 7.1 60 123-191 23-82 (102)
50 2frh_A SARA, staphylococcal ac 88.8 0.32 1.1E-05 38.9 3.6 52 120-175 34-87 (127)
51 1lj9_A Transcriptional regulat 88.7 0.42 1.4E-05 38.2 4.4 50 121-174 27-76 (144)
52 3bja_A Transcriptional regulat 88.7 0.3 1E-05 38.7 3.4 50 121-174 31-80 (139)
53 2rdp_A Putative transcriptiona 88.7 0.48 1.6E-05 38.2 4.7 51 120-174 39-89 (150)
54 2a61_A Transcriptional regulat 88.7 0.41 1.4E-05 38.2 4.3 51 120-174 30-80 (145)
55 3cjn_A Transcriptional regulat 88.6 0.46 1.6E-05 38.9 4.6 51 120-174 49-99 (162)
56 3e6m_A MARR family transcripti 88.6 0.36 1.2E-05 39.7 4.0 51 121-175 51-101 (161)
57 2k02_A Ferrous iron transport 88.5 0.43 1.5E-05 36.6 3.9 44 127-174 6-49 (87)
58 2eth_A Transcriptional regulat 88.4 0.55 1.9E-05 38.2 5.0 51 120-174 41-91 (154)
59 1u2w_A CADC repressor, cadmium 88.4 0.85 2.9E-05 36.3 5.9 49 122-174 41-89 (122)
60 2nyx_A Probable transcriptiona 88.3 0.41 1.4E-05 39.8 4.2 51 120-174 42-92 (168)
61 3deu_A Transcriptional regulat 88.1 0.51 1.8E-05 39.3 4.6 51 121-175 51-102 (166)
62 1ku9_A Hypothetical protein MJ 88.1 0.85 2.9E-05 36.3 5.8 51 121-175 24-75 (152)
63 2bv6_A MGRA, HTH-type transcri 88.1 0.34 1.2E-05 38.7 3.4 50 121-174 35-84 (142)
64 2fbi_A Probable transcriptiona 88.0 0.39 1.3E-05 38.2 3.7 51 120-174 33-83 (142)
65 3s2w_A Transcriptional regulat 88.0 0.37 1.3E-05 39.5 3.6 52 120-175 47-98 (159)
66 1qbj_A Protein (double-strande 87.8 0.7 2.4E-05 34.8 4.7 47 125-175 12-61 (81)
67 1s3j_A YUSO protein; structura 87.6 0.44 1.5E-05 38.6 3.8 51 120-174 34-84 (155)
68 2heo_A Z-DNA binding protein 1 87.3 0.64 2.2E-05 33.4 4.1 45 121-165 8-53 (67)
69 1p6r_A Penicillinase repressor 87.1 0.7 2.4E-05 33.9 4.3 52 120-175 6-61 (82)
70 1z91_A Organic hydroperoxide r 87.0 0.47 1.6E-05 38.0 3.7 51 121-175 38-88 (147)
71 3r4k_A Transcriptional regulat 86.9 0.57 2E-05 42.4 4.5 57 126-192 9-66 (260)
72 3fm5_A Transcriptional regulat 86.9 0.74 2.5E-05 37.2 4.8 52 120-175 36-88 (150)
73 2oqg_A Possible transcriptiona 86.8 0.78 2.7E-05 35.4 4.7 48 122-174 20-67 (114)
74 3f3x_A Transcriptional regulat 86.3 0.64 2.2E-05 37.2 4.1 50 120-174 34-83 (144)
75 2xrn_A HTH-type transcriptiona 86.3 1.1 3.7E-05 40.0 6.0 56 126-191 9-65 (241)
76 3jw4_A Transcriptional regulat 86.3 0.35 1.2E-05 39.1 2.5 51 120-174 38-90 (148)
77 1bja_A Transcription regulator 86.2 0.95 3.2E-05 35.3 4.8 50 119-172 12-62 (95)
78 2w25_A Probable transcriptiona 86.1 1 3.6E-05 36.9 5.4 49 121-173 5-53 (150)
79 1ub9_A Hypothetical protein PH 86.0 0.67 2.3E-05 34.7 3.8 48 122-173 15-62 (100)
80 3nqo_A MARR-family transcripti 86.0 0.81 2.8E-05 39.0 4.8 51 121-175 39-91 (189)
81 4b8x_A SCO5413, possible MARR- 86.0 0.71 2.4E-05 37.7 4.3 51 121-175 33-85 (147)
82 4aik_A Transcriptional regulat 85.8 1.6 5.4E-05 35.9 6.4 52 120-175 28-80 (151)
83 2pn6_A ST1022, 150AA long hypo 85.7 1.2 4.1E-05 36.4 5.5 47 123-173 3-49 (150)
84 1oyi_A Double-stranded RNA-bin 85.6 0.88 3E-05 34.5 4.2 46 125-175 19-64 (82)
85 3boq_A Transcriptional regulat 85.6 0.49 1.7E-05 38.6 3.1 51 120-174 44-95 (160)
86 2vn2_A DNAD, chromosome replic 85.4 1.2 4.1E-05 36.0 5.3 53 119-175 28-85 (128)
87 1xmk_A Double-stranded RNA-spe 85.3 1.5 5E-05 32.9 5.3 49 122-174 10-59 (79)
88 1r1u_A CZRA, repressor protein 85.2 1.2 4.1E-05 34.4 5.0 48 122-174 25-72 (106)
89 2e1c_A Putative HTH-type trans 85.1 0.81 2.8E-05 38.9 4.3 51 119-173 23-73 (171)
90 2fxa_A Protease production reg 84.4 0.76 2.6E-05 40.0 3.9 52 120-175 45-96 (207)
91 2cfx_A HTH-type transcriptiona 84.1 1.5 5.1E-05 35.7 5.4 48 122-173 4-51 (144)
92 3kp7_A Transcriptional regulat 84.0 0.71 2.4E-05 37.4 3.3 49 120-173 35-83 (151)
93 1i1g_A Transcriptional regulat 83.6 0.96 3.3E-05 36.4 3.9 48 122-173 3-50 (141)
94 2dbb_A Putative HTH-type trans 83.5 1.5 5E-05 35.9 5.1 49 121-173 7-55 (151)
95 2cg4_A Regulatory protein ASNC 83.4 1.4 4.8E-05 36.1 5.0 49 121-173 6-54 (152)
96 2kko_A Possible transcriptiona 83.2 0.99 3.4E-05 35.1 3.7 45 125-174 27-71 (108)
97 3mq0_A Transcriptional repress 83.1 1.1 3.8E-05 40.9 4.6 54 126-190 33-87 (275)
98 2jsc_A Transcriptional regulat 83.0 2.3 7.7E-05 33.6 5.9 61 121-190 19-79 (118)
99 2wte_A CSA3; antiviral protein 82.8 1.2 4.1E-05 40.3 4.6 50 121-174 150-199 (244)
100 3lwf_A LIN1550 protein, putati 82.8 4.5 0.00015 34.0 8.0 59 125-192 31-90 (159)
101 3f6o_A Probable transcriptiona 82.2 2 6.9E-05 33.8 5.3 48 122-174 17-64 (118)
102 3t8r_A Staphylococcus aureus C 82.2 4 0.00014 33.5 7.3 57 126-191 16-73 (143)
103 2y75_A HTH-type transcriptiona 82.1 4.3 0.00015 32.2 7.3 48 135-191 24-71 (129)
104 1mkm_A ICLR transcriptional re 82.0 2.4 8E-05 37.9 6.3 46 125-174 10-56 (249)
105 2ia0_A Putative HTH-type trans 81.8 1.7 5.9E-05 36.8 5.0 52 118-173 12-63 (171)
106 3u2r_A Regulatory protein MARR 81.8 0.8 2.7E-05 37.9 2.9 50 121-174 44-95 (168)
107 2p5v_A Transcriptional regulat 81.7 2 6.9E-05 35.6 5.4 49 121-173 8-56 (162)
108 2o0y_A Transcriptional regulat 81.7 1.8 6.1E-05 39.0 5.4 55 126-191 26-81 (260)
109 2cyy_A Putative HTH-type trans 80.9 1.5 5.3E-05 35.9 4.3 49 121-173 5-53 (151)
110 2g9w_A Conserved hypothetical 79.8 2.7 9.1E-05 34.0 5.3 51 120-174 6-61 (138)
111 3k69_A Putative transcription 79.8 2.8 9.5E-05 35.3 5.6 46 125-174 16-61 (162)
112 1sd4_A Penicillinase repressor 79.5 1.5 5.1E-05 34.4 3.6 51 120-174 7-61 (126)
113 2obp_A Putative DNA-binding pr 79.4 2.2 7.6E-05 33.2 4.5 51 119-173 12-68 (96)
114 2pg4_A Uncharacterized protein 79.4 1.9 6.4E-05 32.4 4.0 43 123-165 15-59 (95)
115 1ylf_A RRF2 family protein; st 78.8 2.9 0.0001 34.4 5.4 47 124-174 17-63 (149)
116 2l02_A Uncharacterized protein 78.8 3.9 0.00013 30.9 5.5 58 128-193 13-70 (82)
117 2g7u_A Transcriptional regulat 78.7 3.2 0.00011 37.3 6.0 55 125-191 16-71 (257)
118 1okr_A MECI, methicillin resis 78.4 1.1 3.9E-05 34.9 2.6 51 120-174 7-61 (123)
119 2lkp_A Transcriptional regulat 78.4 2.7 9.4E-05 32.7 4.9 48 121-173 30-77 (119)
120 1sfu_A 34L protein; protein/Z- 78.0 3.3 0.00011 30.8 4.8 44 128-175 20-63 (75)
121 2ia2_A Putative transcriptiona 78.0 2.6 8.8E-05 38.1 5.2 55 126-192 24-79 (265)
122 3i4p_A Transcriptional regulat 77.9 2.6 8.9E-05 35.1 4.8 45 125-173 5-49 (162)
123 1hsj_A Fusion protein consisti 77.6 2.1 7.1E-05 41.5 4.7 52 119-174 400-453 (487)
124 3f6v_A Possible transcriptiona 77.5 3 0.0001 34.7 5.0 48 122-174 57-104 (151)
125 1r1t_A Transcriptional repress 77.5 4.6 0.00016 32.1 6.0 47 123-174 46-92 (122)
126 4fx0_A Probable transcriptiona 76.8 3.3 0.00011 33.7 5.1 45 121-165 31-80 (148)
127 2hzt_A Putative HTH-type trans 76.6 4.8 0.00017 30.9 5.8 45 125-174 16-61 (107)
128 1fse_A GERE; helix-turn-helix 76.6 4.7 0.00016 28.2 5.3 41 120-162 11-51 (74)
129 2p5k_A Arginine repressor; DNA 76.2 3.5 0.00012 28.3 4.4 37 125-161 7-48 (64)
130 1xd7_A YWNA; structural genomi 75.6 4.8 0.00016 32.9 5.8 44 125-174 13-56 (145)
131 2qlz_A Transcription factor PF 75.4 10 0.00035 33.9 8.3 167 122-293 11-221 (232)
132 1p4x_A Staphylococcal accessor 75.1 3.2 0.00011 37.5 4.9 52 120-175 155-208 (250)
133 1q1h_A TFE, transcription fact 74.8 4 0.00014 31.3 4.8 43 128-174 23-66 (110)
134 1je8_A Nitrate/nitrite respons 74.6 5.1 0.00017 29.4 5.2 41 120-162 21-61 (82)
135 3df8_A Possible HXLR family tr 74.3 7.5 0.00026 30.2 6.4 51 119-174 23-76 (111)
136 2v79_A DNA replication protein 73.9 2.8 9.5E-05 34.4 3.8 51 255-305 56-113 (135)
137 2x4h_A Hypothetical protein SS 73.8 7 0.00024 30.9 6.2 51 120-174 10-64 (139)
138 2k4b_A Transcriptional regulat 73.6 1.1 3.8E-05 34.9 1.3 52 120-175 32-87 (99)
139 1bby_A RAP30; average structur 73.6 4.5 0.00015 29.6 4.4 38 125-162 10-47 (69)
140 1on2_A Transcriptional regulat 73.2 4.1 0.00014 32.6 4.7 42 129-174 14-55 (142)
141 1xn7_A Hypothetical protein YH 72.2 1.9 6.6E-05 32.1 2.3 44 232-283 6-49 (78)
142 1p4x_A Staphylococcal accessor 71.7 2.7 9.3E-05 37.9 3.6 53 119-175 30-84 (250)
143 1x3u_A Transcriptional regulat 71.3 8.2 0.00028 27.4 5.6 40 121-162 17-56 (79)
144 1uly_A Hypothetical protein PH 70.9 7.8 0.00027 33.4 6.2 49 121-174 18-66 (192)
145 1z7u_A Hypothetical protein EF 70.5 5.4 0.00019 30.9 4.7 47 123-174 22-69 (112)
146 2fbk_A Transcriptional regulat 70.4 1.4 4.9E-05 36.9 1.3 50 121-174 67-119 (181)
147 2f2e_A PA1607; transcription f 70.2 11 0.00039 30.7 6.9 56 115-175 16-71 (146)
148 3c57_A Two component transcrip 70.0 5.8 0.0002 30.0 4.6 42 120-163 27-68 (95)
149 4a5n_A Uncharacterized HTH-typ 69.8 8.2 0.00028 31.4 5.8 46 124-174 27-73 (131)
150 3ulq_B Transcriptional regulat 69.1 7.5 0.00026 29.2 5.1 44 118-163 27-70 (90)
151 2qvo_A Uncharacterized protein 68.1 3.2 0.00011 31.2 2.7 45 121-165 10-58 (95)
152 2fsw_A PG_0823 protein; alpha- 67.3 8 0.00027 29.6 5.0 44 126-174 28-72 (107)
153 2p4w_A Transcriptional regulat 67.1 8.3 0.00029 33.6 5.6 65 122-191 14-79 (202)
154 2p7v_B Sigma-70, RNA polymeras 66.9 7.7 0.00026 27.1 4.5 41 122-162 7-50 (68)
155 1bia_A BIRA bifunctional prote 66.7 9.9 0.00034 35.3 6.4 42 124-165 6-47 (321)
156 2vn2_A DNAD, chromosome replic 66.3 5.5 0.00019 32.0 4.0 58 255-312 56-123 (128)
157 3b73_A PHIH1 repressor-like pr 66.1 6.5 0.00022 31.2 4.3 50 121-174 11-62 (111)
158 2jpc_A SSRB; DNA binding prote 66.0 7.4 0.00025 26.2 4.1 35 127-163 5-39 (61)
159 1tc3_C Protein (TC3 transposas 65.6 8.2 0.00028 24.1 4.1 34 126-161 12-45 (51)
160 1p6r_A Penicillinase repressor 65.1 5.1 0.00017 29.1 3.3 52 230-285 11-62 (82)
161 1yyv_A Putative transcriptiona 64.5 7.4 0.00025 31.3 4.5 48 122-174 34-82 (131)
162 2rnj_A Response regulator prot 63.7 6.4 0.00022 29.3 3.7 40 121-162 30-69 (91)
163 2fe3_A Peroxide operon regulat 63.6 11 0.00037 30.8 5.4 65 119-190 18-88 (145)
164 2qlz_A Transcription factor PF 63.4 7.3 0.00025 34.9 4.6 44 127-174 168-211 (232)
165 1x19_A CRTF-related protein; m 63.3 13 0.00043 34.5 6.5 43 136-190 63-105 (359)
166 2o03_A Probable zinc uptake re 63.1 10 0.00034 30.4 5.0 52 119-174 7-64 (131)
167 3t72_q RNA polymerase sigma fa 62.9 10 0.00035 29.3 4.8 33 127-159 27-61 (99)
168 1mzb_A Ferric uptake regulatio 62.7 10 0.00034 30.6 5.0 65 119-190 14-85 (136)
169 2yu3_A DNA-directed RNA polyme 62.4 8.4 0.00029 29.8 4.2 51 120-174 34-86 (95)
170 3dp7_A SAM-dependent methyltra 61.1 11 0.00037 35.3 5.5 44 135-190 48-91 (363)
171 3cuq_B Vacuolar protein-sortin 60.9 59 0.002 28.6 10.1 51 121-175 152-202 (218)
172 2r3s_A Uncharacterized protein 60.8 11 0.00037 34.3 5.4 43 136-190 38-80 (335)
173 1ku3_A Sigma factor SIGA; heli 60.1 14 0.00047 26.1 4.8 39 122-160 12-53 (73)
174 2k02_A Ferrous iron transport 59.8 2.3 7.8E-05 32.5 0.5 45 232-284 6-50 (87)
175 2xig_A Ferric uptake regulatio 59.7 13 0.00044 30.6 5.2 52 119-174 23-80 (150)
176 2fu4_A Ferric uptake regulatio 59.4 9.8 0.00034 27.5 4.0 52 231-285 20-73 (83)
177 2zkz_A Transcriptional repress 59.0 7 0.00024 29.6 3.2 43 122-164 26-68 (99)
178 2l01_A Uncharacterized protein 58.3 16 0.00053 27.3 4.8 45 127-174 14-59 (77)
179 2ip2_A Probable phenazine-spec 57.9 15 0.00052 33.4 5.9 43 136-189 40-82 (334)
180 1tw3_A COMT, carminomycin 4-O- 57.9 12 0.00041 34.5 5.2 45 135-190 50-94 (360)
181 3i53_A O-methyltransferase; CO 57.6 18 0.00062 32.9 6.4 35 136-174 37-71 (332)
182 1z6r_A MLC protein; transcript 57.2 19 0.00066 34.0 6.7 64 126-193 19-85 (406)
183 1okr_A MECI, methicillin resis 56.8 7.4 0.00025 30.1 3.1 53 231-287 13-65 (123)
184 4a0z_A Transcription factor FA 55.9 8.4 0.00029 33.3 3.5 42 124-165 13-54 (190)
185 2w57_A Ferric uptake regulatio 55.7 11 0.00038 30.9 4.2 52 119-174 13-71 (150)
186 2b0l_A GTP-sensing transcripti 55.6 8.8 0.0003 29.6 3.3 45 127-175 32-77 (102)
187 3mcz_A O-methyltransferase; ad 55.3 16 0.00056 33.4 5.7 34 137-174 56-89 (352)
188 1r7j_A Conserved hypothetical 55.3 36 0.0012 25.7 6.8 43 126-174 11-53 (95)
189 1p4w_A RCSB; solution structur 54.7 14 0.00049 28.3 4.3 42 120-163 34-75 (99)
190 1tty_A Sigma-A, RNA polymerase 53.8 19 0.00065 26.4 4.8 40 122-161 20-62 (87)
191 1qgp_A Protein (double strande 53.7 7.3 0.00025 28.6 2.4 50 230-287 16-68 (77)
192 2x48_A CAG38821; archeal virus 53.5 20 0.0007 23.5 4.5 23 136-158 30-52 (55)
193 3i4p_A Transcriptional regulat 53.3 14 0.00048 30.5 4.4 47 229-283 4-50 (162)
194 3f8b_A Transcriptional regulat 53.2 20 0.0007 28.0 5.2 60 224-284 8-67 (116)
195 1qbj_A Protein (double-strande 52.9 12 0.00041 27.9 3.5 51 229-287 11-64 (81)
196 3to7_A Histone acetyltransfera 52.8 10 0.00034 35.0 3.6 30 132-161 203-232 (276)
197 1qzz_A RDMB, aclacinomycin-10- 52.7 13 0.00046 34.3 4.6 36 135-174 47-82 (374)
198 1j5y_A Transcriptional regulat 52.5 15 0.00052 31.1 4.6 42 124-165 22-64 (187)
199 3hug_A RNA polymerase sigma fa 52.2 21 0.00073 26.3 4.9 37 123-161 40-77 (92)
200 2o8x_A Probable RNA polymerase 51.7 23 0.00078 24.2 4.7 38 122-161 17-55 (70)
201 1xma_A Predicted transcription 51.2 14 0.00047 30.4 4.0 58 226-284 39-96 (145)
202 1v4r_A Transcriptional repress 50.6 5.2 0.00018 30.4 1.2 40 132-175 29-69 (102)
203 2h09_A Transcriptional regulat 50.5 19 0.00066 28.9 4.8 37 134-174 51-87 (155)
204 1sfx_A Conserved hypothetical 50.5 12 0.00042 27.6 3.3 50 228-285 20-69 (109)
205 1tbx_A ORF F-93, hypothetical 49.6 13 0.00045 27.6 3.3 52 230-285 10-61 (99)
206 3lst_A CALO1 methyltransferase 49.4 23 0.00077 32.7 5.6 44 135-190 53-96 (348)
207 2ozu_A Histone acetyltransfera 48.6 13 0.00043 34.4 3.6 28 134-161 211-238 (284)
208 3eyy_A Putative iron uptake re 48.5 14 0.00048 30.1 3.6 52 119-174 15-71 (145)
209 3hrs_A Metalloregulator SCAR; 48.2 29 0.00099 30.0 5.8 45 127-175 10-54 (214)
210 1sd4_A Penicillinase repressor 48.0 8.4 0.00029 29.9 2.1 55 229-287 11-65 (126)
211 2jt1_A PEFI protein; solution 47.8 12 0.0004 27.7 2.7 59 224-290 4-64 (77)
212 2pq8_A Probable histone acetyl 47.4 11 0.00037 34.8 2.9 29 133-161 204-232 (278)
213 3k2z_A LEXA repressor; winged 47.2 25 0.00085 29.9 5.1 51 121-175 3-58 (196)
214 2k4b_A Transcriptional regulat 46.2 4.4 0.00015 31.4 0.1 53 230-286 37-89 (99)
215 2htj_A P fimbrial regulatory p 46.0 20 0.00067 25.9 3.7 45 231-283 3-47 (81)
216 2ou2_A Histone acetyltransfera 45.4 15 0.00051 33.9 3.5 25 137-161 212-236 (280)
217 3tqn_A Transcriptional regulat 45.2 27 0.00092 27.0 4.7 40 132-175 27-67 (113)
218 1i1g_A Transcriptional regulat 44.8 18 0.00061 28.6 3.6 47 229-283 5-51 (141)
219 2w48_A Sorbitol operon regulat 44.4 26 0.00089 32.1 5.1 44 125-172 9-52 (315)
220 3kp7_A Transcriptional regulat 44.0 11 0.00037 30.1 2.2 65 229-302 39-114 (151)
221 2hoe_A N-acetylglucosamine kin 43.6 21 0.00073 33.5 4.5 55 135-193 31-87 (380)
222 3mwm_A ZUR, putative metal upt 42.6 30 0.001 27.9 4.7 65 119-190 10-80 (139)
223 3u1d_A Uncharacterized protein 41.9 92 0.0031 25.9 7.7 45 125-173 31-78 (151)
224 3rkx_A Biotin-[acetyl-COA-carb 41.9 61 0.0021 30.0 7.3 39 127-165 7-47 (323)
225 2g9w_A Conserved hypothetical 41.6 12 0.00041 29.9 2.1 55 229-287 10-65 (138)
226 2qww_A Transcriptional regulat 41.0 19 0.00065 28.5 3.2 45 230-282 43-87 (154)
227 2ek5_A Predicted transcription 41.0 36 0.0012 27.1 4.9 40 132-175 22-62 (129)
228 3gwz_A MMCR; methyltransferase 40.8 18 0.00063 33.7 3.6 36 135-174 69-104 (369)
229 3iuo_A ATP-dependent DNA helic 40.8 45 0.0015 26.4 5.4 40 124-165 21-60 (122)
230 3mzy_A RNA polymerase sigma-H 40.8 27 0.00092 27.5 4.1 38 121-160 110-147 (164)
231 1jko_C HIN recombinase, DNA-in 40.5 31 0.0011 21.6 3.7 31 127-159 13-43 (52)
232 1z05_A Transcriptional regulat 40.5 23 0.0008 33.8 4.3 63 126-192 42-107 (429)
233 2xvc_A ESCRT-III, SSO0910; cel 40.1 53 0.0018 23.1 4.8 45 125-173 13-57 (59)
234 2pn6_A ST1022, 150AA long hypo 39.4 31 0.0011 27.6 4.3 47 229-283 4-50 (150)
235 3by6_A Predicted transcription 38.8 31 0.0011 27.3 4.1 39 133-175 30-69 (126)
236 2cg4_A Regulatory protein ASNC 38.8 30 0.001 27.8 4.2 46 229-282 9-54 (152)
237 3neu_A LIN1836 protein; struct 38.2 40 0.0014 26.6 4.7 38 134-175 33-71 (125)
238 1ufm_A COP9 complex subunit 4; 38.2 43 0.0015 24.9 4.6 48 118-165 11-58 (84)
239 4hbl_A Transcriptional regulat 37.6 24 0.00081 28.0 3.3 65 230-302 43-116 (149)
240 3r0a_A Putative transcriptiona 37.4 20 0.0007 28.1 2.8 48 228-283 26-75 (123)
241 3ke2_A Uncharacterized protein 37.3 87 0.003 25.0 6.4 35 130-165 27-61 (117)
242 2p5v_A Transcriptional regulat 36.7 29 0.001 28.3 3.8 46 230-283 12-57 (162)
243 2e1c_A Putative HTH-type trans 36.2 33 0.0011 28.6 4.1 47 229-283 28-74 (171)
244 2cfx_A HTH-type transcriptiona 36.1 32 0.0011 27.5 3.9 47 229-283 6-52 (144)
245 3c7j_A Transcriptional regulat 36.0 38 0.0013 29.7 4.7 41 131-175 43-83 (237)
246 3ryp_A Catabolite gene activat 35.8 48 0.0016 27.2 5.1 34 137-174 167-200 (210)
247 3cuq_B Vacuolar protein-sortin 35.5 53 0.0018 28.9 5.5 123 116-285 74-203 (218)
248 3cuq_A Vacuolar-sorting protei 35.2 65 0.0022 28.8 6.0 52 120-175 151-202 (234)
249 1u5t_A Appears to BE functiona 35.1 50 0.0017 29.5 5.3 51 120-174 164-214 (233)
250 2fbh_A Transcriptional regulat 35.0 32 0.0011 26.6 3.7 47 230-284 39-86 (146)
251 2cyy_A Putative HTH-type trans 35.0 41 0.0014 27.0 4.4 46 230-283 9-54 (151)
252 2nyx_A Probable transcriptiona 35.0 24 0.00082 28.7 3.0 45 231-283 48-92 (168)
253 2w25_A Probable transcriptiona 34.8 34 0.0011 27.5 3.8 47 229-283 8-54 (150)
254 3tgn_A ADC operon repressor AD 34.6 37 0.0013 26.4 3.9 46 230-284 40-85 (146)
255 1yg2_A Gene activator APHA; vi 34.4 29 0.00098 29.1 3.4 57 228-285 2-58 (179)
256 2lnb_A Z-DNA-binding protein 1 34.3 23 0.00079 26.5 2.4 41 125-165 21-62 (80)
257 1rp3_A RNA polymerase sigma fa 34.3 47 0.0016 28.0 4.9 24 136-159 202-225 (239)
258 1l3l_A Transcriptional activat 34.2 54 0.0018 28.3 5.3 42 120-163 173-214 (234)
259 3cdh_A Transcriptional regulat 34.1 32 0.0011 27.2 3.6 48 229-284 44-91 (155)
260 3clo_A Transcriptional regulat 34.0 36 0.0012 30.1 4.2 40 121-162 198-237 (258)
261 4a6d_A Hydroxyindole O-methylt 33.7 40 0.0014 31.2 4.6 36 135-174 41-76 (353)
262 4ham_A LMO2241 protein; struct 33.0 52 0.0018 26.1 4.7 40 132-175 32-72 (134)
263 3oop_A LIN2960 protein; protei 32.7 23 0.00078 27.7 2.4 46 231-284 40-85 (143)
264 3bpv_A Transcriptional regulat 32.5 28 0.00096 26.8 2.9 48 229-284 30-77 (138)
265 2dbb_A Putative HTH-type trans 32.5 36 0.0012 27.3 3.6 47 229-283 10-56 (151)
266 2oz6_A Virulence factor regula 32.4 70 0.0024 26.1 5.6 34 137-174 164-197 (207)
267 2lfw_A PHYR sigma-like domain; 31.6 40 0.0014 27.2 3.8 38 121-159 94-131 (157)
268 1or7_A Sigma-24, RNA polymeras 31.5 59 0.002 26.5 4.9 24 136-159 155-178 (194)
269 3szt_A QCSR, quorum-sensing co 31.5 49 0.0017 28.8 4.6 42 120-163 175-216 (237)
270 2oxl_A Hypothetical protein YM 31.3 1.4E+02 0.0048 21.2 6.8 50 226-277 7-59 (64)
271 2o0m_A Transcriptional regulat 31.3 10 0.00035 35.5 0.0 50 119-172 16-65 (345)
272 3mn2_A Probable ARAC family tr 31.2 81 0.0028 23.5 5.3 28 135-162 16-43 (108)
273 3hsr_A HTH-type transcriptiona 31.0 26 0.0009 27.4 2.5 48 229-284 37-84 (140)
274 2ia0_A Putative HTH-type trans 30.9 41 0.0014 28.0 3.8 47 229-283 18-64 (171)
275 3g3z_A NMB1585, transcriptiona 30.8 45 0.0016 25.9 3.9 49 229-285 32-80 (145)
276 3eyy_A Putative iron uptake re 30.8 29 0.00098 28.2 2.7 51 231-284 22-72 (145)
277 3chm_A COP9 signalosome comple 30.7 32 0.0011 29.2 3.0 43 123-165 95-139 (169)
278 4esf_A PADR-like transcription 30.5 71 0.0024 24.9 4.9 58 224-284 7-64 (117)
279 4ev0_A Transcription regulator 30.4 72 0.0025 26.2 5.4 34 137-174 163-196 (216)
280 2q0o_A Probable transcriptiona 30.2 54 0.0019 28.3 4.7 41 121-163 176-216 (236)
281 3ech_A MEXR, multidrug resista 30.1 29 0.00099 27.1 2.6 49 229-285 38-86 (142)
282 2eth_A Transcriptional regulat 30.1 36 0.0012 27.0 3.2 47 229-283 45-91 (154)
283 3cuo_A Uncharacterized HTH-typ 30.0 38 0.0013 24.6 3.1 52 228-287 24-75 (99)
284 2l0k_A Stage III sporulation p 29.3 34 0.0012 26.0 2.8 34 125-159 9-42 (93)
285 3dkw_A DNR protein; CRP-FNR, H 29.1 62 0.0021 26.9 4.7 34 137-174 178-211 (227)
286 3nrv_A Putative transcriptiona 29.1 48 0.0016 25.8 3.8 48 229-284 41-88 (148)
287 3dv8_A Transcriptional regulat 29.0 83 0.0029 25.9 5.5 34 137-174 169-202 (220)
288 2zcw_A TTHA1359, transcription 28.9 81 0.0028 25.8 5.4 33 138-174 147-179 (202)
289 2fa5_A Transcriptional regulat 28.9 48 0.0016 26.3 3.8 47 230-284 51-97 (162)
290 2gau_A Transcriptional regulat 28.9 84 0.0029 26.2 5.6 34 137-174 180-213 (232)
291 2pjp_A Selenocysteine-specific 28.8 1.8E+02 0.0061 22.5 7.1 106 129-288 13-118 (121)
292 3l7w_A Putative uncharacterize 28.8 34 0.0012 26.1 2.7 55 225-284 6-60 (108)
293 3iwz_A CAP-like, catabolite ac 28.7 80 0.0027 26.2 5.4 33 138-174 188-220 (230)
294 3oou_A LIN2118 protein; protei 28.7 1E+02 0.0035 23.0 5.5 28 135-162 19-46 (108)
295 3oio_A Transcriptional regulat 28.7 84 0.0029 23.7 5.0 28 135-162 21-48 (113)
296 2lfc_A Fumarate reductase, fla 28.6 40 0.0014 27.8 3.3 24 138-161 96-119 (160)
297 2frh_A SARA, staphylococcal ac 28.6 16 0.00055 28.5 0.8 24 260-283 63-86 (127)
298 3bro_A Transcriptional regulat 28.6 38 0.0013 26.1 3.1 47 230-284 36-84 (141)
299 1fp1_D Isoliquiritigenin 2'-O- 28.4 41 0.0014 31.2 3.8 33 138-174 63-101 (372)
300 3la7_A Global nitrogen regulat 28.4 82 0.0028 26.8 5.5 34 137-174 193-226 (243)
301 1xma_A Predicted transcription 28.4 65 0.0022 26.2 4.5 50 119-173 37-94 (145)
302 3b02_A Transcriptional regulat 28.2 77 0.0026 25.8 5.1 34 137-174 139-172 (195)
303 2k9s_A Arabinose operon regula 27.9 1.2E+02 0.0041 22.5 5.7 27 136-162 19-45 (107)
304 3f2g_A Alkylmercury lyase; MER 27.8 72 0.0025 28.2 5.0 39 124-162 23-61 (220)
305 4esb_A Transcriptional regulat 27.8 48 0.0016 25.8 3.5 57 225-284 6-62 (115)
306 3d0s_A Transcriptional regulat 27.7 88 0.003 26.0 5.5 34 137-174 177-210 (227)
307 3qp6_A CVIR transcriptional re 27.5 61 0.0021 28.9 4.6 42 120-163 197-238 (265)
308 2qc0_A Uncharacterized protein 27.4 37 0.0012 32.2 3.2 38 134-175 308-345 (373)
309 3bdd_A Regulatory protein MARR 27.3 39 0.0013 26.0 2.9 49 229-285 32-80 (142)
310 2vqc_A Hypothetical 13.2 kDa p 27.2 48 0.0016 25.5 3.1 45 120-164 10-59 (118)
311 1w7p_D VPS36P, YLR417W; ESCRT- 27.1 87 0.003 31.7 6.0 50 122-175 493-549 (566)
312 1y0u_A Arsenical resistance op 27.0 53 0.0018 24.1 3.5 45 230-284 33-77 (96)
313 2esh_A Conserved hypothetical 26.8 55 0.0019 25.3 3.7 49 120-173 10-67 (118)
314 3htu_A Vacuolar protein-sortin 26.6 98 0.0034 22.9 4.8 36 136-172 26-69 (79)
315 3bwg_A Uncharacterized HTH-typ 26.5 72 0.0025 27.9 4.8 40 132-175 23-63 (239)
316 2rdp_A Putative transcriptiona 26.5 41 0.0014 26.3 2.9 25 260-284 66-90 (150)
317 2pex_A Transcriptional regulat 26.4 33 0.0011 27.1 2.3 45 232-284 51-95 (153)
318 1zg3_A Isoflavanone 4'-O-methy 26.4 43 0.0015 30.8 3.5 35 136-174 44-81 (358)
319 3edp_A LIN2111 protein; APC883 26.4 71 0.0024 27.9 4.7 40 132-175 27-67 (236)
320 1lj9_A Transcriptional regulat 26.3 39 0.0013 26.2 2.7 47 230-284 31-77 (144)
321 1uxc_A FRUR (1-57), fructose r 26.2 53 0.0018 23.0 3.1 22 138-159 1-22 (65)
322 3hhh_A Transcriptional regulat 26.1 70 0.0024 24.9 4.2 58 224-284 9-66 (116)
323 3e6c_C CPRK, cyclic nucleotide 26.1 98 0.0034 26.3 5.6 34 137-174 177-210 (250)
324 3k2z_A LEXA repressor; winged 25.9 65 0.0022 27.1 4.3 55 224-286 5-60 (196)
325 4g6q_A Putative uncharacterize 25.9 78 0.0027 26.6 4.7 49 120-173 20-69 (182)
326 1hw1_A FADR, fatty acid metabo 25.9 72 0.0025 27.4 4.6 40 132-175 25-65 (239)
327 3s2w_A Transcriptional regulat 25.7 32 0.0011 27.4 2.2 46 231-284 53-98 (159)
328 3b73_A PHIH1 repressor-like pr 25.5 44 0.0015 26.2 2.8 48 229-284 14-63 (111)
329 2pi2_A Replication protein A 3 25.5 15 0.0005 33.4 0.0 45 121-165 205-253 (270)
330 3e97_A Transcriptional regulat 25.3 74 0.0025 26.6 4.5 34 137-174 175-208 (231)
331 2wv0_A YVOA, HTH-type transcri 25.2 78 0.0027 27.7 4.8 40 132-175 28-68 (243)
332 1jgs_A Multiple antibiotic res 25.2 50 0.0017 25.3 3.2 46 230-283 36-81 (138)
333 1ft9_A Carbon monoxide oxidati 25.2 68 0.0023 26.7 4.3 33 138-174 164-196 (222)
334 1xsv_A Hypothetical UPF0122 pr 24.9 59 0.002 25.2 3.5 39 122-161 27-65 (113)
335 3lsg_A Two-component response 24.8 1.3E+02 0.0045 22.0 5.4 27 136-162 18-44 (103)
336 1zyb_A Transcription regulator 24.8 94 0.0032 26.1 5.1 33 138-174 187-219 (232)
337 1stz_A Heat-inducible transcri 24.7 1E+02 0.0034 28.8 5.7 50 121-174 15-71 (338)
338 1oyi_A Double-stranded RNA-bin 24.7 34 0.0012 25.6 1.9 51 229-288 18-68 (82)
339 3kcc_A Catabolite gene activat 24.7 1E+02 0.0035 26.6 5.5 34 137-174 217-250 (260)
340 4ets_A Ferric uptake regulatio 24.5 1.1E+02 0.0038 25.2 5.4 65 119-190 29-101 (162)
341 3bj6_A Transcriptional regulat 24.3 46 0.0016 26.0 2.8 47 230-284 42-88 (152)
342 2a61_A Transcriptional regulat 24.3 56 0.0019 25.2 3.3 48 229-284 34-81 (145)
343 3mkl_A HTH-type transcriptiona 24.2 1.1E+02 0.0037 23.3 5.0 26 135-160 21-46 (120)
344 3eqx_A FIC domain containing t 24.1 56 0.0019 31.0 3.8 38 134-175 308-345 (373)
345 1ku9_A Hypothetical protein MJ 24.0 55 0.0019 25.2 3.2 46 230-283 28-74 (152)
346 2dk5_A DNA-directed RNA polyme 23.9 23 0.00077 26.8 0.8 45 231-283 23-69 (91)
347 3cjn_A Transcriptional regulat 23.9 41 0.0014 26.8 2.5 47 230-284 54-100 (162)
348 3f8m_A GNTR-family protein tra 23.8 1.3E+02 0.0043 26.5 5.9 44 127-176 26-70 (248)
349 3k0l_A Repressor protein; heli 23.8 38 0.0013 27.1 2.3 48 229-284 47-94 (162)
350 2gqq_A Leucine-responsive regu 23.6 12 0.00041 30.9 -0.9 49 120-172 10-58 (163)
351 2fmy_A COOA, carbon monoxide o 23.4 80 0.0027 26.2 4.3 33 137-173 167-199 (220)
352 1bl0_A Protein (multiple antib 23.4 1.2E+02 0.0041 23.5 5.1 28 135-162 25-52 (129)
353 3l7w_A Putative uncharacterize 23.1 98 0.0033 23.5 4.4 50 119-173 5-58 (108)
354 2oqg_A Possible transcriptiona 23.0 39 0.0013 25.3 2.1 50 229-287 22-71 (114)
355 1u5t_B Defective in vacuolar p 22.8 54 0.0018 27.7 3.0 59 124-190 100-165 (169)
356 1t6s_A Conserved hypothetical 22.8 87 0.003 26.3 4.3 34 130-163 15-50 (162)
357 2hr3_A Probable transcriptiona 22.7 56 0.0019 25.3 3.0 47 231-285 38-85 (147)
358 1mzb_A Ferric uptake regulatio 22.7 79 0.0027 25.1 3.9 53 229-284 19-73 (136)
359 1s7o_A Hypothetical UPF0122 pr 22.6 67 0.0023 25.0 3.4 40 121-162 23-63 (113)
360 3deu_A Transcriptional regulat 22.4 54 0.0019 26.6 3.0 47 230-284 55-102 (166)
361 3sxy_A Transcriptional regulat 22.1 70 0.0024 27.2 3.8 40 132-175 30-69 (218)
362 2hs5_A Putative transcriptiona 22.0 94 0.0032 27.0 4.7 40 132-175 46-85 (239)
363 1wh7_A ZF-HD homeobox family p 21.9 76 0.0026 23.2 3.4 41 115-155 18-66 (80)
364 3c1d_A Protein ORAA, regulator 21.8 1.9E+02 0.0066 23.5 6.3 34 262-304 44-77 (159)
365 2nnn_A Probable transcriptiona 21.7 55 0.0019 25.0 2.7 25 259-283 61-85 (140)
366 2gmg_A Hypothetical protein PF 21.6 73 0.0025 25.0 3.3 40 121-162 10-53 (105)
367 3c3w_A Two component transcrip 21.6 1.2E+02 0.0042 25.3 5.2 42 120-163 149-190 (225)
368 3eet_A Putative GNTR-family tr 21.5 97 0.0033 27.7 4.7 40 132-175 47-87 (272)
369 1s3j_A YUSO protein; structura 21.3 38 0.0013 26.6 1.7 45 232-284 41-85 (155)
370 1fp2_A Isoflavone O-methyltran 20.9 76 0.0026 29.0 4.0 35 136-174 50-87 (352)
371 2gxg_A 146AA long hypothetical 20.9 62 0.0021 25.0 2.9 46 230-284 39-84 (146)
372 1wi9_A Protein C20ORF116 homol 20.8 95 0.0032 22.7 3.6 40 231-278 10-49 (72)
373 3kev_A Galieria sulfuraria DCU 20.7 1.7E+02 0.0059 25.3 6.0 72 236-322 51-125 (199)
374 2bgc_A PRFA; bacterial infecti 20.7 1.2E+02 0.0043 25.5 5.1 34 137-174 169-203 (238)
375 1on2_A Transcriptional regulat 20.6 64 0.0022 25.2 3.0 46 232-285 12-57 (142)
376 2k9l_A RNA polymerase sigma fa 20.5 1.5E+02 0.0051 21.3 4.7 35 127-161 36-72 (76)
377 3klo_A Transcriptional regulat 20.4 1.5E+02 0.0052 24.6 5.6 42 120-163 159-200 (225)
378 4ets_A Ferric uptake regulatio 20.4 93 0.0032 25.7 4.0 52 230-284 35-89 (162)
No 1
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=2.5e-54 Score=423.79 Aligned_cols=252 Identities=29% Similarity=0.394 Sum_probs=217.5
Q ss_pred hhHHHHHHHhhcCC--CCcccc---cccCCCCCC--CCCCCCCHHHHHHHHhhhHhhhcccCCCCeEEeecCCceEEEEE
Q psy11818 17 ENDLFKFYLAKHSG--RQLTLQ---PQMGSADLN--AVFFGPRREEVHIFSIYPLRFYLAKHSGRQLTLQPQMGSADLNA 89 (331)
Q Consensus 17 ~~~~f~~~~~~~~~--~~~~~~---~~~~swp~~--~~~~~lP~~L~~~~~~F~~~fY~~k~~~RkL~W~~~Lg~~~l~~ 89 (331)
.+..|++++.+.+. ..++|+ ++.++||.. ..++.+|++|..+++.| +.||..+|+||+|+|+|+||+|+|++
T Consensus 108 l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F-~~fY~~~~~gRkL~W~~~lg~~~l~~ 186 (382)
T 3dpl_C 108 LNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEV-EEFYKKNHSGRKLHWHHLMSNGIITF 186 (382)
T ss_dssp HHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHH-HHHHHTTSSSEEEEECGGGCEEEEEE
T ss_pred HHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHH-HHHHHhcCCCCEEEEecCcccEEEEE
Confidence 35678877654432 235565 689999986 36999999999999999 99999999999999999999999999
Q ss_pred EEcCCCcCCCCCCCCCCCCCCCCCCCcEEEEEchHHHHHHHHhcCC--CCCCHHHHHHhcCCCHHHHHHHHHHHHcc-cC
Q psy11818 90 VFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTYQMCVLLLFNNR--EKLTYEEIQSETDIPERDLIRALQSLAMG-KA 166 (331)
Q Consensus 90 ~f~~~~k~~~~~~~~~~~~~~~~~~~~~~l~vs~~Qa~ILllFN~~--~~lt~~eL~~~tgi~~~~l~~~L~sL~~~-k~ 166 (331)
.|. ++.++|+||++||+||++||+. +.||++||++.|||+.++|+++|.+|+.. |.
T Consensus 187 ~~~---------------------~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~ 245 (382)
T 3dpl_C 187 KNE---------------------VGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKL 245 (382)
T ss_dssp ECS---------------------SCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTC
T ss_pred EeC---------------------CceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcccch
Confidence 886 3589999999999999999986 89999999999999999999999999863 22
Q ss_pred cccceeecCC---CCCCCCCCeEEEecCCCCC-----ceeEEEecccc-CCCChhHHHHhhhhhHHhhhhhHHHHHHHhh
Q psy11818 167 SQRILIRYPK---TKEIEPNHVFFVNDSFTSK-----LHRVKIQTVAA-KGESEPERRETRSKVDEDRKHEIEAAVVRIM 237 (331)
Q Consensus 167 ~~~IL~~~~~---~~~i~~~~~f~lN~~F~~k-----~~ki~i~~~~~-k~e~~~e~~~~~~~v~edR~~~IqAaIVRIM 237 (331)
.++||.++|. +.++.+++.|.||.+|++. .+|++|+.+.. +.++..+.+++++.+++||++.|||||||||
T Consensus 246 k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIVRIM 325 (382)
T 3dpl_C 246 KRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIM 325 (382)
T ss_dssp SSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEehhh
Confidence 2469998875 3678899999999999862 25677776531 2345666778899999999999999999999
Q ss_pred hcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcccccc
Q psy11818 238 KARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQ 290 (331)
Q Consensus 238 K~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i~ 290 (331)
|+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+|+++|+++.
T Consensus 326 K~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y 378 (382)
T 3dpl_C 326 KMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTF 378 (382)
T ss_dssp TTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred hccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999988653
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=2.3e-51 Score=433.50 Aligned_cols=247 Identities=33% Similarity=0.464 Sum_probs=222.6
Q ss_pred HhhHHHHHHHhhcCCCCcccc---cccCCCCCC-CCCCCCCHHHHHHHHhhhHhhhcccCCCCeEEeecCCceEEEEEEE
Q psy11818 16 LENDLFKFYLAKHSGRQLTLQ---PQMGSADLN-AVFFGPRREEVHIFSIYPLRFYLAKHSGRQLTLQPQMGSADLNAVF 91 (331)
Q Consensus 16 ~~~~~f~~~~~~~~~~~~~~~---~~~~swp~~-~~~~~lP~~L~~~~~~F~~~fY~~k~~~RkL~W~~~Lg~~~l~~~f 91 (331)
-.+..|++++++.....++|+ ++.++||.. ..++.+|++|..+++.| +.||..+|+||+|+|+|+||+|+|+++|
T Consensus 500 ~l~~~f~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F-~~fY~~~~~~RkL~W~~~lg~~~l~~~~ 578 (760)
T 1ldj_A 500 DLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRF-TAFYASRHSGRKLTWLYQLSKGELVTNC 578 (760)
T ss_dssp HHHHHHHHHHTTTCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHH-HHHTTTTCTTCCEEECGGGCCCEEEESS
T ss_pred HHHHHHHHHHhcccCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHH-HHHHHHhCCCCeEEEecccccEEEEEEE
Confidence 346788888765223345665 689999986 46999999999999999 9999999999999999999999999998
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCCCcEEEEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccce
Q psy11818 92 FGPRREEGEGKDGASSSTSPPAPRKHIIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRIL 171 (331)
Q Consensus 92 ~~~~k~~~~~~~~~~~~~~~~~~~~~~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL 171 (331)
. ++.++|+||++||+||++||+.+.||++||++.|||+.++|+++|.+|++.| ||
T Consensus 579 ~---------------------~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~----iL 633 (760)
T 1ldj_A 579 F---------------------KNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSK----LL 633 (760)
T ss_dssp S---------------------SSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTT----TE
T ss_pred C---------------------CceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----cc
Confidence 6 3578999999999999999999999999999999999999999999999877 99
Q ss_pred eecC-----CCCCCCCCCeEEEecCCCCCceeEEEeccccCCCChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChH
Q psy11818 172 IRYP-----KTKEIEPNHVFFVNDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHN 246 (331)
Q Consensus 172 ~~~~-----~~~~i~~~~~f~lN~~F~~k~~ki~i~~~~~k~e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~ 246 (331)
.+.| .++++.+++.|.+|.+|++++.||+|+.+. +.++.+|...+++.+++||.+.||||||||||++|+|+|+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~-~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~ 712 (760)
T 1ldj_A 634 VLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPM-KTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQ 712 (760)
T ss_dssp ECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHH
T ss_pred eeCCCccccccCCCCCCCEEEeeccccCCceEEEecCcc-ccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHH
Confidence 8554 678899999999999999999999998653 3355667778899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccccc
Q psy11818 247 TLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFL 289 (331)
Q Consensus 247 ~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i 289 (331)
+|+.+|+++++++|.|++.+||+|||+||+||||+|+++|+++
T Consensus 713 ~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~ 755 (760)
T 1ldj_A 713 QLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT 755 (760)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTE
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcc
Confidence 9999999999999999999999999999999999999998765
No 3
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.1e-50 Score=428.22 Aligned_cols=248 Identities=40% Similarity=0.562 Sum_probs=225.7
Q ss_pred HhhHHHHHHHhhcC-CCCcccc---cccCCCCCCC-CCCCCCHHHHHHHHhhhHhhhcccCCCCeEEeecCCceEEEEEE
Q psy11818 16 LENDLFKFYLAKHS-GRQLTLQ---PQMGSADLNA-VFFGPRREEVHIFSIYPLRFYLAKHSGRQLTLQPQMGSADLNAV 90 (331)
Q Consensus 16 ~~~~~f~~~~~~~~-~~~~~~~---~~~~swp~~~-~~~~lP~~L~~~~~~F~~~fY~~k~~~RkL~W~~~Lg~~~l~~~ 90 (331)
-.+..|++++++.+ ...++|+ ++.++||... .++.+|++|..+++.| +.||..+|+||+|+|+|+||+|+|+++
T Consensus 503 ~l~~~f~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F-~~fY~~~~~gRkL~W~~~lg~~~l~~~ 581 (759)
T 2hye_C 503 DIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVF-KAFYLGKHSGRKLQWQTTLGHAVLKAE 581 (759)
T ss_dssp HHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHH-HHHHHTTSCSEECCBCGGGCEEEEECC
T ss_pred HHHHHHHHHHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHH-HHHHHhhCCCCEEEeccccCcEEEEEE
Confidence 44678888875532 2245665 6899999874 6899999999999999 999999999999999999999999999
Q ss_pred EcCCCcCCCCCCCCCCCCCCCCCCCcEEEEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccc
Q psy11818 91 FFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRI 170 (331)
Q Consensus 91 f~~~~k~~~~~~~~~~~~~~~~~~~~~~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~I 170 (331)
|. ++.++|+||++||+||++||+.+.||++||++.|||++++|+++|.+|+.++ .+|
T Consensus 582 ~~---------------------~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k--~~v 638 (759)
T 2hye_C 582 FK---------------------EGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK--ARV 638 (759)
T ss_dssp CS---------------------SCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTT--TCS
T ss_pred eC---------------------CceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccC--Cce
Confidence 86 3578999999999999999999999999999999999999999999999654 459
Q ss_pred eeecCCCCCCCCCCeEEEecCCCCCceeEEEeccccCCCChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHH
Q psy11818 171 LIRYPKTKEIEPNHVFFVNDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLIT 250 (331)
Q Consensus 171 L~~~~~~~~i~~~~~f~lN~~F~~k~~ki~i~~~~~k~e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~ 250 (331)
|.++|.++++.+++.|.+|.+|++++.|++|+.+..+ ++.+|..++++.+++||.+.||||||||||++|+|+|++|+.
T Consensus 639 L~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~-e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ 717 (759)
T 2hye_C 639 LIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMK-ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVS 717 (759)
T ss_dssp EEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHH
T ss_pred eecCCCCCCCCCCCEEEeeccccCCceEEEecccccc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 9999999999999999999999999999999977666 777788889999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcccccc
Q psy11818 251 EVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQ 290 (331)
Q Consensus 251 ~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i~ 290 (331)
+|+++++ |.|++.+||+|||+||+||||+|+++|+++.
T Consensus 718 ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y 755 (759)
T 2hye_C 718 ELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQY 755 (759)
T ss_dssp HHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEE
T ss_pred HHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCCCee
Confidence 9999997 9999999999999999999999999987653
No 4
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.91 E-value=7e-26 Score=179.38 Aligned_cols=82 Identities=80% Similarity=1.208 Sum_probs=77.0
Q ss_pred CCChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 208 GESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 208 ~e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
.++.+|..++++.+++||.+.||||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+|+++|+
T Consensus 6 ~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~ 85 (92)
T 1iuy_A 6 GESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDR 85 (92)
T ss_dssp CCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCS
T ss_pred cccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 36666777889999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q psy11818 288 FL 289 (331)
Q Consensus 288 ~i 289 (331)
++
T Consensus 86 ~~ 87 (92)
T 1iuy_A 86 KV 87 (92)
T ss_dssp SE
T ss_pred Ce
Confidence 65
No 5
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.91 E-value=3.9e-25 Score=173.56 Aligned_cols=75 Identities=33% Similarity=0.581 Sum_probs=72.3
Q ss_pred hHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcc
Q psy11818 212 PERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPED 286 (331)
Q Consensus 212 ~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d 286 (331)
+|..++++.+++||.+.||||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||+||+||||+|+++|
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~ 81 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG 81 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC
Confidence 467789999999999999999999999999999999999999999999999999999999999999999999886
No 6
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=2.1e-25 Score=179.29 Aligned_cols=88 Identities=44% Similarity=0.625 Sum_probs=79.2
Q ss_pred EEEeccccCCCChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Q psy11818 199 VKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIERE 278 (331)
Q Consensus 199 i~i~~~~~k~e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIere 278 (331)
++|+.++.+ ++.+|..++++.+++||.+.||||||||||++|+|+|++|+.+|+++++ |.|++.+||+|||+||+||
T Consensus 3 ~ki~~i~~k-e~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIere 79 (101)
T 2do7_A 3 SGSSGIQMK-ETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRD 79 (101)
T ss_dssp CSSCSCCCC-CCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTT
T ss_pred eeecccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhh
Confidence 345555555 6666777889999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHhCCccccc
Q psy11818 279 YLARTPEDRFL 289 (331)
Q Consensus 279 yI~Rd~~d~~i 289 (331)
||+|+++|+++
T Consensus 80 YleR~~~d~~~ 90 (101)
T 2do7_A 80 YMERDKENPNQ 90 (101)
T ss_dssp SEEECSSCTTE
T ss_pred HHhcCCCCCCe
Confidence 99999987764
No 7
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.90 E-value=4e-25 Score=169.50 Aligned_cols=72 Identities=50% Similarity=0.696 Sum_probs=68.1
Q ss_pred hhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcccccc
Q psy11818 219 SKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQ 290 (331)
Q Consensus 219 ~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i~ 290 (331)
+.+++||.+.||||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+|+++|+++.
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y 73 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTY 73 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceE
Confidence 457899999999999999999999999999999999999999999999999999999999999999987653
No 8
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=97.89 E-value=7.7e-06 Score=79.75 Aligned_cols=42 Identities=45% Similarity=0.729 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHhhh
Q psy11818 286 DRFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKV 327 (331)
Q Consensus 286 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
-.++.|||||+.||+++||+||+++++++.|.|+.|+.+|+.
T Consensus 43 f~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK~ 84 (382)
T 3dpl_C 43 LKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLRE 84 (382)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999983
No 9
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=97.44 E-value=9.1e-05 Score=78.14 Aligned_cols=42 Identities=62% Similarity=0.910 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHhhhc
Q psy11818 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKVR 328 (331)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (331)
.++.+||||+.||+++||+||+++++.+.|.|+.|+.+||..
T Consensus 441 ~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~ 482 (759)
T 2hye_C 441 RFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 482 (759)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999864
No 10
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=97.39 E-value=0.0001 Score=77.74 Aligned_cols=41 Identities=51% Similarity=0.884 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHhhh
Q psy11818 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKV 327 (331)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
.++.+||||+.||+++||+||+++++.+.|.|+.|+.+||.
T Consensus 438 ~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~ 478 (760)
T 1ldj_A 438 KYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQ 478 (760)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999985
No 11
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=94.94 E-value=0.046 Score=42.35 Aligned_cols=53 Identities=9% Similarity=0.255 Sum_probs=45.2
Q ss_pred EEEEEchHHHHHHHHhcC--CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 117 HIIQVSTYQMCVLLLFNN--REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 117 ~~l~vs~~Qa~ILllFN~--~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
....++..|..||....+ ++.++..||++.++++...+.+.|..|...+ ++.+
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kg----lIkr 68 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKK----LIKA 68 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEE
Confidence 345678899999977765 6689999999999999999999999999877 6654
No 12
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=93.37 E-value=0.039 Score=56.41 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=49.4
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccC-cccceeecCCCCCCCCCCeEEEecCCCCCceeEE
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKA-SQRILIRYPKTKEIEPNHVFFVNDSFTSKLHRVK 200 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~-~~~IL~~~~~~~~i~~~~~f~lN~~F~~k~~ki~ 200 (331)
+..+..||........+|..+|++.+|++...+.+.|..|+.... +..++... +..|.|+..+.......
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 456778887777788999999999999999999999999998210 01277654 35788887642111000
Q ss_pred EeccccCCCChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q psy11818 201 IQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYL 280 (331)
Q Consensus 201 i~~~~~k~e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI 280 (331)
.+... .-...... -....+..|+..++.++.++-.|+.+.+- .+...+.+.|..|+++|-|
T Consensus 500 -------~~~~~-~~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l~~--------ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 500 -------EPSPF-SPVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAMCG--------VSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp -------C------------------------------------------------------------------------
T ss_pred -------ccccc-cccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHHHC--------CCHHHHHHHHHHHHHCCcE
Confidence 00000 00000000 12345667899999999999887766442 3556679999999999999
Q ss_pred HhCCccccccchHH
Q psy11818 281 ARTPEDRFLQEKDV 294 (331)
Q Consensus 281 ~Rd~~d~~i~~~~~ 294 (331)
++....++..=..+
T Consensus 561 ~~~G~gr~t~Y~~~ 574 (583)
T 3lmm_A 561 VAVGGGRSRRYRLV 574 (583)
T ss_dssp --------------
T ss_pred EEeCCCCceEEEEe
Confidence 99887776654444
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.19 E-value=0.24 Score=37.30 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=43.1
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+..|..||..+.+.+.+|..||++.+|++...+.++|..|...+ ++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~g----lv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEG----LIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEE
Confidence 46788888888777789999999999999999999999999887 77654
No 14
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.30 E-value=0.16 Score=38.55 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=44.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||..+...+.+|..||++.+|++...+.+.|..|...+ ++.+.
T Consensus 17 ~l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~g----lv~~~ 67 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRG----FVRRE 67 (109)
T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEE
Confidence 3578899999888777789999999999999999999999999988 77653
No 15
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.11 E-value=0.26 Score=39.60 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=45.8
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+.+|..|..||......+ +|..||++.+|++...+.+.|..|...| ++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~G----lv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEG----MLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCC----CeEecc
Confidence 457899999999998888 9999999999999999999999999988 777643
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.10 E-value=0.18 Score=37.79 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCC
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEI 180 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i 180 (331)
...|+.||++.+|++...+.+.|..|...+ +|.+.+.+..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG----~I~R~~ggr~~ 63 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVG----VLEKVNAGKGV 63 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEESCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----cEEecCCCCCc
Confidence 789999999999999999999999999988 88887654433
No 17
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=92.10 E-value=0.41 Score=36.35 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=45.1
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
+..+..||.++ .+.+++.||++.+|++...+.++|..|...+ ++.... ..|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~G----lv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGF----CIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEEC--------CEEEECCC
Confidence 45566777777 4679999999999999999999999999988 887642 26777764
No 18
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=91.79 E-value=0.5 Score=35.80 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=41.4
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+..+..||....+ +.+|+.||++.+|++...+.++|..|...| ++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~G----lv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDG----LVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEEEE
Confidence 3456677777766 789999999999999999999999999988 887654
No 19
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.77 E-value=0.49 Score=34.89 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=37.1
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.||..+...+.+|..||++.+|++...+.+.|..|...+ ++...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~G----lI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAG----MVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHT----SEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEe
Confidence 456555555789999999999999999999999999887 77653
No 20
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=91.65 E-value=0.25 Score=39.81 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+|..|..||......+.+|..+|++.+|++...+.+.+..|...| ++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQG----LIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeecc
Confidence 588999999888777789999999999999999999999999988 777653
No 21
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=91.58 E-value=0.23 Score=40.02 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=47.0
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||......+.+|..||++.+|++...+.+.+..|...+ ++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G----lv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKD----YVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCC----CeEecC
Confidence 4688999999999888899999999999999999999999999988 877654
No 22
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.38 E-value=0.32 Score=36.82 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=41.4
Q ss_pred EchHHHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|...+ ++.+.+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g----~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELG----LVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEeec
Confidence 45667777655433 6789999999999999999999999999988 777643
No 23
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=91.37 E-value=0.41 Score=38.93 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=45.5
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~G----lv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARG----LVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEec
Confidence 578899999998888899999999999999999999999999987 77664
No 24
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=91.06 E-value=0.48 Score=37.89 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=44.1
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||.... .+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g----lv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMG----LVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCC----CEEee
Confidence 5788999998888 8889999999999999999999999999987 77654
No 25
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.03 E-value=0.37 Score=38.50 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=45.4
Q ss_pred EEchHHHHHHHHh-cCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLF-NNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllF-N~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.++..|..||... ...+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~g----lv~r~~ 86 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQG----LVRRLA 86 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC----CeeecC
Confidence 3578899999888 777889999999999999999999999999887 776643
No 26
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=90.90 E-value=0.31 Score=35.93 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=46.0
Q ss_pred EEEchHHHHHHHHhcCC--CCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 119 IQVSTYQMCVLLLFNNR--EKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~--~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+..+.-+..||..+.+. ..+|++||++.+ +++...+.+.|..|...+ ++.+..
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G----lv~~~~ 72 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG----IVTRHN 72 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT----SEEEEE
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC----CeEEEe
Confidence 45678889999998775 589999999999 999999999999999988 877643
No 27
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=90.63 E-value=0.21 Score=40.15 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=43.3
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
..+|..|+.||......+.+|..+|++.+|++...+.+.+..|...| ++.+.+
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G----lv~r~~ 85 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRN----LVRRER 85 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTT----SEEC--
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEeecc
Confidence 35788999999988888899999999999999999999999999988 877643
No 28
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=90.40 E-value=0.3 Score=38.67 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=45.2
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||......+.+|..||++.+|++...+.+.+..|...+ ++.+.
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~g----lv~~~ 76 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESG----FIERE 76 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEee
Confidence 3578899999888777899999999999999999999999999987 77654
No 29
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=90.37 E-value=0.35 Score=38.96 Aligned_cols=52 Identities=8% Similarity=0.132 Sum_probs=45.7
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.++..|..||......+.+|..||++.+|++...+.+.+..|...| ++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G----lv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKK----YIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEeec
Confidence 5788999999988888899999999999999999999999999987 777643
No 30
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=90.17 E-value=0.38 Score=48.43 Aligned_cols=134 Identities=10% Similarity=0.092 Sum_probs=88.5
Q ss_pred HhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecCCCCCceeEEEeccccCCCC
Q psy11818 131 LFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSFTSKLHRVKIQTVAAKGES 210 (331)
Q Consensus 131 lFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~F~~k~~ki~i~~~~~k~e~ 210 (331)
+...++.+|+.+|...|+++...++..|..|++.+ ++...+.+. ....|.+|.+ .-..+++.+.
T Consensus 27 ~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~----lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk------- 90 (534)
T 2xub_A 27 HLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHN----LVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR------- 90 (534)
T ss_dssp HHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEEETT---TEEEEEECHH--HHHGGGGHHH-------
T ss_pred HHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcC----CeeEEeCCC---CcEEEEEChh--hHHHHHhhHH-------
Confidence 33346899999999999999999999999999997 776543211 1234445432 0001111110
Q ss_pred hhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHhCCcc
Q psy11818 211 EPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSR----FLPSPVIIKKRIESLIEREYLARTPED 286 (331)
Q Consensus 211 ~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~----F~ps~~~IKk~IE~LIereyI~Rd~~d 286 (331)
.-.. .+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+..++..|++.+||.|.+.-
T Consensus 91 ------~l~~-i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~~ 163 (534)
T 2xub_A 91 ------YIYT-TKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSV 163 (534)
T ss_dssp ------HHHH-HHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCCC
T ss_pred ------HHHH-HHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCCC
Confidence 0001 11111223466777777789999999999998776421 235789999999999999999998754
Q ss_pred c
Q psy11818 287 R 287 (331)
Q Consensus 287 ~ 287 (331)
.
T Consensus 164 ~ 164 (534)
T 2xub_A 164 P 164 (534)
T ss_dssp -
T ss_pred C
Confidence 3
No 31
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=90.05 E-value=0.24 Score=39.78 Aligned_cols=52 Identities=21% Similarity=0.182 Sum_probs=46.0
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||......+.+|..||++.+|++...+.+.+..|...| ++.+.+
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G----lv~r~~ 85 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKE----LIVREI 85 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCC----CeeccC
Confidence 3588999999888777899999999999999999999999999988 777654
No 32
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=89.88 E-value=0.47 Score=37.68 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=43.8
Q ss_pred EchHHHHHHHHhcCCC--CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNNRE--KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~--~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+|..|..||......+ .+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G----li~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKK----LLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCC----CEEeeC
Confidence 5778888887776655 79999999999999999999999999987 776643
No 33
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.86 E-value=0.37 Score=36.10 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.|+.+.+.++.++++||++.+++++..+++-|..|...+ .|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G----~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG----KAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHT----SEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEe
Confidence 366667888999999999999999999999999999887 77665
No 34
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.86 E-value=0.48 Score=35.20 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=37.6
Q ss_pred HHHHHHhcCCC---CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 126 MCVLLLFNNRE---KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 126 a~ILllFN~~~---~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
..||.++.... .+|..||++.+|++...+.++|..|...+ ++...+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G----~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG----KLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT----SEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEecC
Confidence 56665555444 89999999999999999999999999887 776643
No 35
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=89.81 E-value=0.42 Score=38.57 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=45.3
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~G----lv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAG----LIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CeeecC
Confidence 578899999888777789999999999999999999999999987 777643
No 36
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=89.78 E-value=0.39 Score=38.94 Aligned_cols=50 Identities=6% Similarity=0.152 Sum_probs=44.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
.++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+
T Consensus 38 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r 87 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLG----LVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEe
Confidence 3578899999888777889999999999999999999999999987 7766
No 37
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=89.71 E-value=0.35 Score=39.87 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=45.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|+.||......+.+|..||++.+|++...+.+.+..|...| ++.+.+
T Consensus 43 glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~~ 94 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANG----WIEKAP 94 (162)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTT----SEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc----CeEecC
Confidence 3578899999888777899999999999999999999999999988 777643
No 38
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.65 E-value=0.35 Score=38.80 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=44.0
Q ss_pred EEEchHHHHHHHHhcCCCC--CCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFNNREK--LTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~--lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.++..|..||..+-..+. +|..||++.+|++...+.++|..|...+ ++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G----lV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE----ILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEee
Confidence 3467889999977765554 9999999999999999999999999988 77654
No 39
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.59 E-value=0.39 Score=38.24 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=44.3
Q ss_pred EEchHHHHHHHHhcCC--CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNR--EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~--~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||...... +.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G----li~r~~ 81 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKK----LIYRYV 81 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC----CEeecC
Confidence 3678889988777655 489999999999999999999999999988 777643
No 40
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=89.58 E-value=0.4 Score=38.04 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=44.3
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~g----li~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKG----WVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCC----CEEec
Confidence 578899999888777789999999999999999999999999887 77654
No 41
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=89.57 E-value=0.35 Score=38.35 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=44.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~g----lv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRG----LIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTT----CEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEee
Confidence 4678899999888767799999999999999999999999999887 77653
No 42
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=89.53 E-value=0.57 Score=35.47 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=45.2
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHH----HHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEI----QSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL----~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||......+.+|..|| ++.+|++...+.+.|..|...+ ++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~g----li~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEG----FVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CEEEE
Confidence 367889999988888889999999 9999999999999999999887 77664
No 43
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=89.40 E-value=0.44 Score=37.84 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=44.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~g----li~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESG----YIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEec
Confidence 4678899999888777789999999999999999999999999987 77654
No 44
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=89.35 E-value=0.47 Score=38.82 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=45.0
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~g----lv~r~ 96 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERG----FIRRE 96 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeee
Confidence 4678899999888777899999999999999999999999999987 77664
No 45
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=89.33 E-value=0.31 Score=39.64 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=45.2
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||......+.+|..+|++.+|++...+.+.+..|...| ++.+.+
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~G----lv~r~~ 89 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSG----WVKRER 89 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEC--
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeeCC
Confidence 3678899999888777899999999999999999999999999988 877643
No 46
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.10 E-value=0.5 Score=37.90 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=45.7
Q ss_pred EEchHHHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.++..|..||..... .+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g----lv~r~~ 84 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGG----LIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC----CEeeCC
Confidence 468889999988876 7889999999999999999999999999987 776643
No 47
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.99 E-value=0.44 Score=39.35 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=43.3
Q ss_pred EEEchHHHHHHHHhcC-----CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 119 IQVSTYQMCVLLLFNN-----REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~-----~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
|.+|.-++.+|+++-. ....|.++|++.+|++..++.+.|..|++.| +|..
T Consensus 28 LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KG----lI~i 83 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKG----FLFI 83 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHT----SCEE
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEE
Confidence 5678888888877543 4668999999999999999999999999988 7765
No 48
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=88.92 E-value=0.45 Score=38.61 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=44.7
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g----lv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAG----LVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC----CEeec
Confidence 578899999888777889999999999999999999999999987 77664
No 49
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=88.91 E-value=1.3 Score=33.73 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=44.4
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 123 TYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 123 ~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
.....||....+ +.+++.||++.+|++...+.++|..|...+ ++.....+. ...|.++..
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~G----lv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESG----IVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTT----SEEEECSSS----CCEEEECSS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEEEEeCC----EEEEEECcH
Confidence 444556655544 569999999999999999999999999988 887654322 345666553
No 50
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=88.79 E-value=0.32 Score=38.86 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=44.4
Q ss_pred EEchHHHHHHHHhcCC--CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNR--EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~--~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||...... +.+|..||++.+|++...+.+.+..|...+ ++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQED----YFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTT----SSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEecC
Confidence 4678888888776555 789999999999999999999999999988 776643
No 51
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=88.74 E-value=0.42 Score=38.18 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=44.2
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~g----li~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQG----FIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCC----CEEee
Confidence 578889999887777789999999999999999999999999987 77654
No 52
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=88.73 E-value=0.3 Score=38.67 Aligned_cols=50 Identities=10% Similarity=0.184 Sum_probs=44.7
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~g----li~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDG----YVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCC----Ceeec
Confidence 578899999888777889999999999999999999999999987 77654
No 53
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=88.73 E-value=0.48 Score=38.15 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=44.7
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 39 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G----lv~r~ 89 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNG----LVARV 89 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCC----Ceeec
Confidence 3578899999888777789999999999999999999999999987 77654
No 54
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.70 E-value=0.41 Score=38.23 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=44.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~g----lv~r~ 80 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADG----YLTRT 80 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCC----Ceeec
Confidence 3678899999888777789999999999999999999999999987 77654
No 55
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=88.65 E-value=0.46 Score=38.92 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=45.1
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 49 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~G----li~r~ 99 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADG----LVRRE 99 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC----CEEec
Confidence 3578899999888777889999999999999999999999999987 77654
No 56
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=88.64 E-value=0.36 Score=39.72 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+|..|..||......+.+|..||++.+|++...+.+.+..|...| ++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G----lv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEG----LAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEeeC
Confidence 578899999888777799999999999999999999999999988 887653
No 57
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.47 E-value=0.43 Score=36.63 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.|+.+.+.++.+++.||++.+|+++..+++-|..|...+ +|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G----~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMG----KVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTC----CSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEE
Confidence 366667888999999999999999999999999999887 66664
No 58
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.45 E-value=0.55 Score=38.23 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=44.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~G----li~r~ 91 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRG----LVVRE 91 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEee
Confidence 4678899999888776789999999999999999999999999987 77654
No 59
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=88.39 E-value=0.85 Score=36.34 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=40.2
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
...+..||..+...+.+|+.||++.+|++...+-++|..|...| ++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~G----lv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQG----VVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEEE
Confidence 34455677666655779999999999999999999999999887 77654
No 60
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=88.34 E-value=0.41 Score=39.81 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=45.3
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||......+.+|..||++.+|++...+.+.+..|...+ ++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G----lV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAE----LIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEec
Confidence 4678899999888777789999999999999999999999999987 77664
No 61
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.10 E-value=0.51 Score=39.34 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=44.2
Q ss_pred EchHHHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
++..|+.||..... .+.+|..||++.+|++...+.+.+..|...+ ++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G----lV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKG----LISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCC----CEEeeC
Confidence 57789999987765 6779999999999999999999999999988 887653
No 62
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=88.09 E-value=0.85 Score=36.30 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=40.2
Q ss_pred EchHHHHHHHHhc-CCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFN-NREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN-~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
++..|..||..+- ..+.+|..||++.+|++...+.+.|..|...| ++.+.+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G----~v~r~~ 75 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELG----FVRKVW 75 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEEe
Confidence 4556665654432 34679999999999999999999999999988 877653
No 63
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=88.07 E-value=0.34 Score=38.74 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=44.6
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~g----li~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVD----LIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCC----CEEee
Confidence 578899999888777789999999999999999999999999987 77654
No 64
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.04 E-value=0.39 Score=38.15 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=44.7
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~g----lv~r~ 83 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDG----IVRRW 83 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCC----CEEee
Confidence 3578899999888777789999999999999999999999999887 77654
No 65
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=88.01 E-value=0.37 Score=39.52 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=44.6
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||......+.+|..||++.+|++...+.+.+..|...| ++.+.+
T Consensus 47 ~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~~ 98 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEG----YVFRQR 98 (159)
T ss_dssp TCCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEec
Confidence 3567788888877767889999999999999999999999999988 776643
No 66
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=87.79 E-value=0.7 Score=34.79 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCC---CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 125 QMCVLLLFNNRE---KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 125 Qa~ILllFN~~~---~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+..||..+-+.. .+|..||++.+|++...+.++|..|...+ ++...+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G----~I~~~g 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG----KLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEES
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEecC
Confidence 555665555544 89999999999999999999999999887 776643
No 67
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=87.58 E-value=0.44 Score=38.57 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=45.0
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g----lv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKN----LIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeec
Confidence 4678899999888777789999999999999999999999999987 77654
No 68
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.27 E-value=0.64 Score=33.39 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=36.3
Q ss_pred EchHHHHHHHHhcCC-CCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 121 VSTYQMCVLLLFNNR-EKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 121 vs~~Qa~ILllFN~~-~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
++-..-.||.+|.+. ..++..||++.+|++...+.+.|..|...+
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G 53 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKED 53 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 333455677777543 569999999999999999999999999887
No 69
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=87.06 E-value=0.7 Score=33.92 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=44.9
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcC----CCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETD----IPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tg----i~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|...| ++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kG----lv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG----ALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCC----CeEEEe
Confidence 46889999998877778899999999996 68899999999999988 887654
No 70
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=87.05 E-value=0.47 Score=38.02 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=44.9
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~g----lv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQG----LITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHT----SEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCC----CEEecc
Confidence 578899999888777789999999999999999999999999987 776643
No 71
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=86.94 E-value=0.57 Score=42.45 Aligned_cols=57 Identities=11% Similarity=0.241 Sum_probs=46.5
Q ss_pred HHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecCC
Q psy11818 126 MCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSF 192 (331)
Q Consensus 126 a~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~F 192 (331)
+.||.+|.. ...+|+.||++.+|++...+.+.|..|...+ ++.+++. +..|.+...+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G----~v~~~~~------~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAG----FVEQVEG------ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTT----SEEECSS------SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEcCC------CCcEEcCHHH
Confidence 357788886 4679999999999999999999999999998 8888652 3567776543
No 72
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=86.93 E-value=0.74 Score=37.18 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=42.8
Q ss_pred EEchHHHHHHHHhc-CCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFN-NREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN-~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||.... ..+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G----lv~r~~ 88 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERG----LVVRTL 88 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTT----SEEC--
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCC----CEEeeC
Confidence 35788999998765 44579999999999999999999999999987 777643
No 73
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=86.82 E-value=0.78 Score=35.41 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=40.1
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+..+..||..+ ..+.+++.||++.+|++...+.++|..|...+ ++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~g----li~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACG----LVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeeEE
Confidence 45567777777 45679999999999999999999999999887 77654
No 74
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=86.34 E-value=0.64 Score=37.25 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=43.7
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|..|..||......+. |..+|++.+|++...+.+.+..|...| ++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~G----lv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKG----LVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCC----CEEec
Confidence 467889999988877777 999999999999999999999999987 77654
No 75
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=86.34 E-value=1.1 Score=40.05 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=44.9
Q ss_pred HHHHHHhcCC-CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 126 MCVLLLFNNR-EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 126 a~ILllFN~~-~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
+.||.+|... ..+|+.||++.+|++...+.+.|..|...+ ++.+.+. +..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G----~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEF----LVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTT----SEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEeCC------CCeEEECHH
Confidence 3577778765 479999999999999999999999999988 8887542 346777654
No 76
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=86.29 E-value=0.35 Score=39.08 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=37.9
Q ss_pred EEchHHHHHHHHhcCC--CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNR--EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~--~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|..|..||...... +.+|..+|++.+|++...+.+.+..|...| ++.+.
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G----lv~r~ 90 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKG----YIERR 90 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTT----SBCCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC----CEEee
Confidence 3578888888776654 789999999999999999999999999988 77654
No 77
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=86.21 E-value=0.95 Score=35.30 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=45.1
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHH-hcCCCHHHHHHHHHHHHcccCccccee
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQS-ETDIPERDLIRALQSLAMGKASQRILI 172 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~-~tgi~~~~l~~~L~sL~~~k~~~~IL~ 172 (331)
..++..|+.||.....++..|..+|++ ..+|+...+-+++.+|...| ++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~G----lVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKG----LVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTT----SEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCC----Cee
Confidence 357888999998887777999999999 99999999999999999988 776
No 78
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.11 E-value=1 Score=36.85 Aligned_cols=49 Identities=6% Similarity=0.119 Sum_probs=42.9
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
++..+..||..+...+.+|+.||++.+|++...+.+.|..|...| ++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRG----VVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEE
Confidence 456777888887777889999999999999999999999999988 7754
No 79
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.02 E-value=0.67 Score=34.68 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=40.9
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
+..+..||..+...+.+|+.||++.+|++...+-++|..|...+ ++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~g----li~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNG----LVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEE
Confidence 56677888766555689999999999999999999999999887 7764
No 80
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=86.00 E-value=0.81 Score=39.01 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=44.2
Q ss_pred EchHHHHHHHHhcC--CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNN--REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~--~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+|..|..||..... .+.+|..+|++.+|++...+.+.+..|...| ++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G----lV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNG----YVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEecc
Confidence 78889999977654 5689999999999999999999999999988 777643
No 81
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=85.98 E-value=0.71 Score=37.74 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=42.2
Q ss_pred EchHHHHHHHHh--cCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLF--NNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllF--N~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+|..|..||... +..+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~G----lv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSG----LVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCC----CEEEee
Confidence 567777777554 455679999999999999999999999999988 777653
No 82
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=85.78 E-value=1.6 Score=35.85 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=44.0
Q ss_pred EEchHHHHHHHHhc-CCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFN-NREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN-~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|+.||.... ..+..+..||++.+|++...+.+.+..|...| ++.+.+
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~G----lV~R~~ 80 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKG----LITRHT 80 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCC----CeEeec
Confidence 46788999998775 45678889999999999999999999999988 777643
No 83
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.65 E-value=1.2 Score=36.36 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 123 TYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 123 ~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
..+..||..+.....++..||++.+|++...+.+.|..|...| ++.+
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 49 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDG----VIKG 49 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT----SSCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEEE
Confidence 4567788888888899999999999999999999999999988 7764
No 84
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=85.61 E-value=0.88 Score=34.53 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
-.-||.++..+. +|+.||++.+|++...+.++|..|...+ ++...+
T Consensus 19 ~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG----~I~~~~ 64 (82)
T 1oyi_A 19 VCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSA----MVYSSD 64 (82)
T ss_dssp HHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHT----SSEECS
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEeCC
Confidence 334444444444 9999999999999999999999999887 776643
No 85
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=85.61 E-value=0.49 Score=38.57 Aligned_cols=51 Identities=8% Similarity=0.189 Sum_probs=45.1
Q ss_pred EEchHHHHHHHHh-cCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLF-NNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllF-N~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|+.||... ...+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~G----li~r~ 95 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDG----MVVKA 95 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHT----SEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCC----CEEee
Confidence 4688899999888 577789999999999999999999999999987 87764
No 86
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=85.40 E-value=1.2 Score=35.99 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=42.2
Q ss_pred EEEchHHHHHHHHh---cC--CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 119 IQVSTYQMCVLLLF---NN--REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 119 l~vs~~Qa~ILllF---N~--~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+..+..|+.||+++ ++ ....|..+|++.+|++..++.++|..|.+.| ++.+..
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kG----lI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKG----MIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTT----SSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEEe
Confidence 44677777777554 32 2348999999999999999999999999998 887653
No 87
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=85.31 E-value=1.5 Score=32.95 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=41.4
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHH-HHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPER-DLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~-~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
...+--||.+....+..|..+|++.+||+.. .+.++|..|-..+ ++.+.
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eG----lV~~~ 59 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQG----DVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTT----SEEEE
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCC----CEEec
Confidence 4556677777777789999999999999998 9999999999887 66654
No 88
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.22 E-value=1.2 Score=34.37 Aligned_cols=48 Identities=8% Similarity=0.167 Sum_probs=39.4
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+..+..||..+. .+.+++.||++.+|++...+.++|..|...+ ++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~G----lv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVH----LVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEEE
Confidence 455666776665 4679999999999999999999999999887 77653
No 89
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=85.07 E-value=0.81 Score=38.89 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=44.5
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
..++..+..||..+.....+++.||++.+|++...+.+.|..|...+ ++..
T Consensus 23 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G----~I~~ 73 (171)
T 2e1c_A 23 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG----VIKK 73 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SSCC
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEe
Confidence 34678888999888877899999999999999999999999999887 7654
No 90
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=84.37 E-value=0.76 Score=40.05 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=45.7
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 45 gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~G----lV~r~~ 96 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERG----YLRFSK 96 (207)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHT----SEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEec
Confidence 3688899999887767789999999999999999999999999988 777653
No 91
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=84.10 E-value=1.5 Score=35.72 Aligned_cols=48 Identities=8% Similarity=0.207 Sum_probs=41.3
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
...+..||..+.....+|+.||++.+|++...+.+.|..|...+ ++.+
T Consensus 4 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 51 (144)
T 2cfx_A 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFG----IIKQ 51 (144)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEE
Confidence 44566788777777889999999999999999999999999887 7764
No 92
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=84.02 E-value=0.71 Score=37.36 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=44.2
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
.+|..|..||... ..+.+|..||++.+|++...+.+.+..|...| ++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G----lv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAE----LVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTT----SEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEe
Confidence 4678899999888 78899999999999999999999999999988 7765
No 93
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=83.59 E-value=0.96 Score=36.42 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=40.9
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
+..+..||..+...+.+++.||++.+|++...+.+.|..|...| ++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKG----IIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT----SSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEec
Confidence 34567788777777789999999999999999999999999887 7754
No 94
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=83.51 E-value=1.5 Score=35.89 Aligned_cols=49 Identities=16% Similarity=0.338 Sum_probs=43.0
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
+...+..||..+.....+|..||++.+|++...+.+.+..|...| ++.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLG----IIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT----SEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEE
Confidence 456677888888888899999999999999999999999999887 7764
No 95
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=83.44 E-value=1.4 Score=36.10 Aligned_cols=49 Identities=8% Similarity=0.217 Sum_probs=42.9
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
++..+..||..+..+..+|+.||++.+|++...+.+.|..|...| ++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAG----IITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHT----SEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcC----Ccce
Confidence 456677888888877899999999999999999999999999887 7764
No 96
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.18 E-value=0.99 Score=35.14 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+..||..+.+ +.+|+.||++.+|++...+.++|..|...+ ++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~G----lV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGG----LVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEEE
Confidence 4456666654 679999999999999999999999999887 77654
No 97
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=83.07 E-value=1.1 Score=40.95 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHhcCC-CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 126 MCVLLLFNNR-EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 126 a~ILllFN~~-~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.||.+|... ..+|+.||++.+|++...+.+.|..|...+ .|.+++ +..|.+..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G----~v~~~~-------~~~Y~LG~ 87 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELD----LLARSA-------DGTLRIGP 87 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTT----SEEECT-------TSEEEECT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEECC-------CCcEEehH
Confidence 4578888765 469999999999999999999999999988 888764 23566654
No 98
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=82.97 E-value=2.3 Score=33.56 Aligned_cols=61 Identities=7% Similarity=0.078 Sum_probs=45.6
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
....+..||..+.+ +.+++.||++.+|++...+.++|..|...+ ++.....+ ....|.++.
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~~G----lV~~~~~g----r~~~y~l~~ 79 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCG----LVVATYEG----RQVRYALAD 79 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTT----SEEEEECS----SSEEEEESS
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----ceEEEEEC----CEEEEEECh
Confidence 45667777776664 568999999999999999999999999887 77654322 123456654
No 99
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=82.80 E-value=1.2 Score=40.27 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=43.5
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|..||..+...+.+|..||++.+|++...+.+.|..|...+ ++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~G----lV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFG----ILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEe
Confidence 455788899887666789999999999999999999999999988 77764
No 100
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=82.80 E-value=4.5 Score=34.05 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecCC
Q psy11818 125 QMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSF 192 (331)
Q Consensus 125 Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~F 192 (331)
.+.+.+.-+. ...+|.++|++.+|++...+.+.|..|.+.+ ++..... ++.-|.+..+-
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aG----lv~s~rG-----~~GGy~Lar~p 90 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAG----IVKSIRG-----AHGGYVLNGDP 90 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEECS-----TTCEEEECSCT
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----eEEEecC-----CCCceEecCCH
Confidence 3334344343 4569999999999999999999999999988 8765431 23457776553
No 101
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=82.24 E-value=2 Score=33.78 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=39.1
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.....||.+.. .+.+++.||++.+|++...+-++|..|...| ++...
T Consensus 17 ~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~G----lV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSG----WIRTH 64 (118)
T ss_dssp SHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCC----CeEEE
Confidence 344556666555 4678999999999999999999999999988 77654
No 102
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=82.18 E-value=4 Score=33.51 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=40.9
Q ss_pred HHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 126 MCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 126 a~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
+.+.+.-+. ...+|.++|++.+|++...+.+.|..|.+.+ ++..... ++.-|.+..+
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aG----lv~s~rG-----~~GGy~Lar~ 73 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAG----LIRSVRG-----AKGGYQLRVP 73 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEECSS-----SSSEEEESSC
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----EEEecCC-----CCCCeeecCC
Confidence 333343333 3469999999999999999999999999988 7764321 2345776554
No 103
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=82.11 E-value=4.3 Score=32.20 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
...+|..||++.+|++...+.+.|..|...+ ++..... .+.-|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~G----lv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAG----LVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT----SEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCC----ceEecCC-----CCCceEeCCC
Confidence 4579999999999999999999999999988 7765421 1244776654
No 104
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=82.00 E-value=2.4 Score=37.90 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHhcCC-CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 125 QMCVLLLFNNR-EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 125 Qa~ILllFN~~-~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
-+.||.+|... ..+|+.||++.+|++...+.+.|..|...+ ++.+.
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G----~v~~~ 56 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG----FVLRK 56 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEEEC
Confidence 34677777654 479999999999999999999999999988 88764
No 105
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.81 E-value=1.7 Score=36.77 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=44.3
Q ss_pred EEEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 118 IIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 118 ~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
.......+..||........+|+.||++.+|++...+.+.|..|...+ ++.+
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G----~I~~ 63 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERG----VIER 63 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEe
Confidence 345677888888888877889999999999999999999999999887 7754
No 106
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=81.77 E-value=0.8 Score=37.87 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred EchHHHHHHHHhcC--CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNN--REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~--~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+|..|+.||..... .+.+|..+|++.+|++...+-+.+..|...| ++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRG----LVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC----CEeec
Confidence 57888888877765 4689999999999999999999999999987 77764
No 107
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=81.71 E-value=2 Score=35.60 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=42.9
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
++..+..||..+.....+|+.||++.+|++...+.+.|..|...+ ++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAG----IVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEee
Confidence 566777888888777889999999999999999999999999887 7764
No 108
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=81.71 E-value=1.8 Score=39.04 Aligned_cols=55 Identities=15% Similarity=0.337 Sum_probs=44.2
Q ss_pred HHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 126 MCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 126 a~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
+.||.+|.. ...+|+.||++.+|++...+.+.|..|...+ ++.+++ .+ .|.+...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G----~v~~~~------~~-~Y~lg~~ 81 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARS----VLTSRA------DG-SYSLGPE 81 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTT----SEEECT------TS-CEEECHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEECC------CC-eEEecHH
Confidence 356777764 5689999999999999999999999999988 888754 12 6777643
No 109
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=80.88 E-value=1.5 Score=35.89 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=42.5
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
++..+..||..+..+..+|+.||++.+|++...+.+.|..|...| ++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G----~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG----VIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT----SSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEE
Confidence 456677888888777889999999999999999999999999887 6654
No 110
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=79.79 E-value=2.7 Score=33.97 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=44.5
Q ss_pred EEchHHHHHHHHhcC-CCCCCHHHHHHhcC----CCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNN-REKLTYEEIQSETD----IPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~-~~~lt~~eL~~~tg----i~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|..|..||...-+ .+.+|..||++.++ ++...+.+.|..|...+ ++.+.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kG----lv~r~ 61 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKN----LVLQI 61 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCC----CEEEE
Confidence 367889999988776 58899999999998 79999999999999988 88764
No 111
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=79.78 E-value=2.8 Score=35.34 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++.+.+..+....+|.++|++.+|++...+.+.|..|.+.+ ++...
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aG----lv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHG----YLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTT----SSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEee
Confidence 44444444555679999999999999999999999999988 76543
No 112
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=79.50 E-value=1.5 Score=34.37 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=44.5
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcC----CCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETD----IPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tg----i~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|..|..||...-+.+.+|..||++.++ ++...+...|..|...| ++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kG----lv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKE----IIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCC----ceEEE
Confidence 46889999998877778899999999997 57899999999999988 88764
No 113
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=79.45 E-value=2.2 Score=33.18 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=42.9
Q ss_pred EEEchHHHHHHHHhcCC------CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 119 IQVSTYQMCVLLLFNNR------EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~------~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
..++..|..+|..+... ..+++.+|++.++++...|.+.|..|...+ ++..
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~G----LV~r 68 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAG----LADV 68 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCC----CEEe
Confidence 35788999998866543 679999999999999999999999999987 6654
No 114
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=79.40 E-value=1.9 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=36.3
Q ss_pred hHHHHHHHHhcCCC-CCCHHHHHHhcCCCHHH-HHHHHHHHHccc
Q psy11818 123 TYQMCVLLLFNNRE-KLTYEEIQSETDIPERD-LIRALQSLAMGK 165 (331)
Q Consensus 123 ~~Qa~ILllFN~~~-~lt~~eL~~~tgi~~~~-l~~~L~sL~~~k 165 (331)
.-++.+|..+...+ .+|..||++.+|++... +-+.+..|...+
T Consensus 15 ~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~G 59 (95)
T 2pg4_A 15 IRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAG 59 (95)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCC
Confidence 34556676666655 89999999999999999 999999999887
No 115
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=78.82 E-value=2.9 Score=34.40 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 124 YQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 124 ~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+.+.+.-+....+|..+|++.+|++...+.+.|..|.+.+ ++...
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~G----lv~s~ 63 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAG----FVYVN 63 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEEEc
Confidence 334444444444579999999999999999999999999988 87653
No 116
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=78.79 E-value=3.9 Score=30.94 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=41.2
Q ss_pred HHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecCCC
Q psy11818 128 VLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSFT 193 (331)
Q Consensus 128 ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~F~ 193 (331)
|--+.|+.+.+|+.+|++.+|++++++..+|.=|..-+ +|.....+ ..-.+.+|..|.
T Consensus 13 VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREd---KI~~~~~~-----~~l~v~L~v~f~ 70 (82)
T 2l02_A 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLAREN---KVVIERKN-----GLIEIYNEGHFD 70 (82)
T ss_dssp HHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTT---SEEEEEET-----TEEEEEEGGGTS
T ss_pred HHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccC---ceeEEeeC-----CEEEEEEcccee
Confidence 34456667799999999999999999999999887664 46654321 233455655443
No 117
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=78.67 E-value=3.2 Score=37.25 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=44.7
Q ss_pred HHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecC
Q psy11818 125 QMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDS 191 (331)
Q Consensus 125 Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~ 191 (331)
-+.||.+|.. ...+|+.||++.+|++...+.+.|..|...+ ++.++ +..|.+...
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G----~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLG----YVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE--------TTEEEECGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEeC--------CCEEEEcHH
Confidence 4467788875 4679999999999999999999999999988 88764 246777654
No 118
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=78.43 E-value=1.1 Score=34.92 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=44.3
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcC----CCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETD----IPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tg----i~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|..|..||......+.+|..||++.++ ++...+.+.|..|...+ ++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~G----lv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKG----FIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHT----SEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCC----CeEEE
Confidence 46888999998776677899999999999 77999999999999988 77664
No 119
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=78.41 E-value=2.7 Score=32.69 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=40.1
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
.+..|..||..+.+ +..++.+|++.+|++...+-++|..|...+ ++..
T Consensus 30 ~~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~G----lv~~ 77 (119)
T 2lkp_A 30 ATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLG----LVVG 77 (119)
T ss_dssp CCHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHC----SEEE
T ss_pred CCHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEE
Confidence 45667788877765 679999999999999999999999999876 6544
No 120
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=77.97 E-value=3.3 Score=30.81 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 128 VLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 128 ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+..+...+..|..+|+..+|++...+.++|-.|.+.+ .+...+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG----~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKED----TVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCC----CEecCC
Confidence 34556677779999999999999999999999999887 665544
No 121
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=77.95 E-value=2.6 Score=38.09 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=44.6
Q ss_pred HHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecCC
Q psy11818 126 MCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSF 192 (331)
Q Consensus 126 a~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~F 192 (331)
+.||.+|.. ...+|+.||++.+|++...+.+.|..|...+ ++.++ +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G----~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELG----YVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEec--------CCEEEEcHHH
Confidence 457777864 5679999999999999999999999999987 88764 2467776543
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=77.86 E-value=2.6 Score=35.10 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
...||.....+..+|+.+|++.+|++...+.+.|+.|...| ++..
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g----~i~~ 49 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG----VIRR 49 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT----SSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----Ceee
Confidence 34678888888899999999999999999999999999887 6653
No 123
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=77.55 E-value=2.1 Score=41.52 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=46.5
Q ss_pred EEEchHHHHHHHHhcCC--CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFNNR--EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~--~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|..|..||....++ +.+|..||++.++++...+.+.|..|.+.+ ++.+.
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g----~v~r~ 453 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLK----LLSKK 453 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTT----TSCCE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeec
Confidence 45789999999888777 889999999999999999999999999988 77664
No 124
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=77.49 E-value=3 Score=34.70 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=40.6
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.....||.+.. .+.+|+.||++.+|++...+-++|..|...+ ++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aG----lV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAG----LVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEE
Confidence 355777887776 5679999999999999999999999999988 77653
No 125
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=77.48 E-value=4.6 Score=32.10 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=38.0
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 123 TYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 123 ~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
..+..||..+.+ +.+++.||++.+|++...+-++|..|...| ++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~G----lv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLR----LVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CeEEE
Confidence 345556766654 679999999999999999999999999887 66543
No 126
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=76.83 E-value=3.3 Score=33.72 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=36.7
Q ss_pred EchHHHHHHHHhcCC-----CCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 121 VSTYQMCVLLLFNNR-----EKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 121 vs~~Qa~ILllFN~~-----~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
+|..|..||...... +.+|..||++.+|++...+-+.+..|...+
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~g 80 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDG 80 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 678899998776543 459999999999999999999999999876
No 127
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=76.61 E-value=4.8 Score=30.95 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhc-CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSET-DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~t-gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+.||.... .+..++.||++.+ |++...+-+.|..|...+ ++.+.
T Consensus 16 ~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G----lI~r~ 61 (107)
T 2hzt_A 16 KXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADG----VINRI 61 (107)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC----CEEEe
Confidence 344554444 4679999999999 999999999999999988 88764
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=76.59 E-value=4.7 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=33.9
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
..+.-|..|+.++ ...+|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4677888888777 4568999999999999999888887654
No 129
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.18 E-value=3.5 Score=28.26 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhc-----CCCHHHHHHHHHHH
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSET-----DIPERDLIRALQSL 161 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~t-----gi~~~~l~~~L~sL 161 (331)
+..|+.+.+..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44555566767889999999999 99999999999944
No 130
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=75.60 E-value=4.8 Score=32.93 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+.+.+.-+.. . |.++|++.+++|...|.+.|..|.+.+ |+...
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aG----lv~s~ 56 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKAD----ILTSR 56 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTT----SEECC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCC----ceEee
Confidence 34444444443 5 999999999999999999999999998 87643
No 131
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=75.44 E-value=10 Score=33.88 Aligned_cols=167 Identities=11% Similarity=0.109 Sum_probs=93.3
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee-cCCCC-CCCCCCeEEEecCCCCC----
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR-YPKTK-EIEPNHVFFVNDSFTSK---- 195 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~-~~~~~-~i~~~~~f~lN~~F~~k---- 195 (331)
+.....||.+..+ +.+|+.||++.+|++...+.++|..|...+ ++.. ...+. .-.+...|.++......
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aG----LV~~~~~~gr~~GRp~~~Y~Lt~~~~~~~~l~ 85 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREG----VLQSYEKEERFIGPTKKYYKISIAKSYVFTLT 85 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTT----SEEEEEECC-----CEEEEEECCCEEEEEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEeeecCCCCCCccEEEEEccchhhHHHHH
Confidence 3445566665554 679999999999999999999999999998 7765 22221 11223456666542110
Q ss_pred ---------------ceeEEEecccc-CC-CChhHH----HHhhhhh--HHhhhhhHHHHHHHhhhcccC--------CC
Q psy11818 196 ---------------LHRVKIQTVAA-KG-ESEPER----RETRSKV--DEDRKHEIEAAVVRIMKARKR--------MQ 244 (331)
Q Consensus 196 ---------------~~ki~i~~~~~-k~-e~~~e~----~~~~~~v--~edR~~~IqAaIVRIMK~~K~--------l~ 244 (331)
...+.|..... .+ ..-.+. .+.++.+ .......+++.+-.+|+..|. ..
T Consensus 86 ~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~ 165 (232)
T 2qlz_A 86 PEMFWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMT 165 (232)
T ss_dssp TTEEEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 00111111000 00 000000 0001111 123345566777777766433 22
Q ss_pred h-HHHHHHHH------HHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccccccchH
Q psy11818 245 H-NTLITEVT------EQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQEKD 293 (331)
Q Consensus 245 ~-~~Li~~V~------~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i~~~~ 293 (331)
. ..|+.... +.+..+...+.+.|...+..|.+.|.|+|..++.-..|.+
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~~~~ 221 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVLDED 221 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEECHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEecHH
Confidence 1 22222211 2333456778899999999999999999887777766665
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=75.06 E-value=3.2 Score=37.46 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=44.6
Q ss_pred EEchHHHHHHHHhcCCC--CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNRE--KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~--~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||......+ .+|..||++.++++...+.+.+..|...| ++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~G----lV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQG----YLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHT----SSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC----CEEeeC
Confidence 46889999998776554 59999999999999999999999999988 777654
No 133
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=74.79 E-value=4 Score=31.33 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHH-hcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 128 VLLL-FNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 128 ILll-FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
|+.. +...+.+|..+|++.+|++...+.++|..|...| ++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G----lV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG----FVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT----SCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEE
Confidence 4433 3445579999999999999999999999999888 77654
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=74.57 E-value=5.1 Score=29.42 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=33.7
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
..+.-|..|+.++ ...+|.+||++.+|++...+..++....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3677788888776 4679999999999999999988887664
No 135
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=74.30 E-value=7.5 Score=30.22 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=39.2
Q ss_pred EEEchHHHHHHHHhcCCCCCC--HHHHHHhc-CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFNNREKLT--YEEIQSET-DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt--~~eL~~~t-gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+........||.... .+..+ +.||++.+ |++...+-++|..|...+ ++.+.
T Consensus 23 ~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G----lV~r~ 76 (111)
T 3df8_A 23 LLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSG----LVERR 76 (111)
T ss_dssp HHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred HHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCC----CEEEe
Confidence 333444556665555 34555 99999999 999999999999999988 88764
No 136
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=73.89 E-value=2.8 Score=34.41 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=38.9
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHh----CCcc---ccccchHHHHHHHHHHHHh
Q psy11818 255 QLKSRFLPSPVIIKKRIESLIEREYLAR----TPED---RFLQEKDVFERYYKQHLAK 305 (331)
Q Consensus 255 ~l~~~F~ps~~~IKk~IE~LIereyI~R----d~~d---~~i~~~~~~~~~~~~~~~~ 305 (331)
++..+...+...|-+.|..|+++|||++ ++++ ....-.++|+.+..-....
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL~~~~~~~ 113 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLYEYIQLA 113 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHHHHHHHHH
Confidence 5566778899999999999999999999 3332 3566678999886554443
No 137
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=73.81 E-value=7 Score=30.92 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=39.5
Q ss_pred EEchHHHHHHHHh----cCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLF----NNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllF----N~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
..+..|.-+|..+ ...+.+|+.+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~G----li~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKG----LVKKK 64 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCC----CEEec
Confidence 4556665555443 345789999999999999999999999999887 77653
No 138
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=73.63 E-value=1.1 Score=34.86 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=43.4
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCC----CHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDI----PERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi----~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+|..|..||..+-+.+.+|..||++.++. +...+.+.|..|...| ++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KG----lV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKE----MLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTT----SCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCC----CEEEEe
Confidence 467788888877766778999999999974 5789999999999988 887654
No 139
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=73.56 E-value=4.5 Score=29.59 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.-.|.-+|.....||+.+|...|+=|+..|+..|..++
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia 47 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG 47 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999874
No 140
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=73.19 E-value=4.1 Score=32.56 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 129 LLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 129 LllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+....+.+|..+|++.+|++...+.+.|..|...| ++.+.
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~G----lv~r~ 55 (142)
T 1on2_A 14 YMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDE----YLIYE 55 (142)
T ss_dssp HHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred HHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEEe
Confidence 3334445679999999999999999999999999887 77664
No 141
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=72.22 E-value=1.9 Score=32.09 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 232 AVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 232 aIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
.|...++.++.++.++|. ..|..+...|.+-|+.|.++|+|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa--------~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQIS--------QTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHH--------HHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 467777888888877543 34789999999999999999999997
No 142
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=71.69 E-value=2.7 Score=37.94 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=45.5
Q ss_pred EEEchHHHHHHHHhcC--CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 119 IQVSTYQMCVLLLFNN--REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~--~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+.+|..|..||+...+ .+.+|..||++.++++...+.+.|..|...| ++.+..
T Consensus 30 ~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G----~i~R~~ 84 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHS----YISKVR 84 (250)
T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTT----SCEEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCC----CEEecC
Confidence 3578999999988765 4689999999999999999999999999988 776643
No 143
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=71.30 E-value=8.2 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=32.1
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.-|..|+.++ ...+|..||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4679999999999999999888877654
No 144
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=70.91 E-value=7.8 Score=33.43 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=41.1
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+..+..||.+.. .+.+|..||++.+|++...+.+.|..|...| ++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~G----lI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAG----LVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEE
Confidence 3556667776666 4689999999999999999999999999988 77654
No 145
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=70.46 E-value=5.4 Score=30.92 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=37.6
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHhc-CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 123 TYQMCVLLLFNNREKLTYEEIQSET-DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 123 ~~Qa~ILllFN~~~~lt~~eL~~~t-gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.....||....+ +.+++.||++.+ |++...+.+.|..|...+ ++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G----lI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDG----LVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT----SEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC----CEEEe
Confidence 344556544433 679999999999 999999999999999988 87764
No 146
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=70.36 E-value=1.4 Score=36.91 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=42.4
Q ss_pred EchHHHHHHHHhcCCC---CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNRE---KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~---~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++..|..||......+ .+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G----lV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKG----LIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHT----SEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc----CEEec
Confidence 5788888887776544 39999999999999999999999999887 77664
No 147
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=70.20 E-value=11 Score=30.65 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=41.7
Q ss_pred CcEEEEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 115 RKHIIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 115 ~~~~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
..+.+.....-+.||.... .+.+++.||++.+|++...+.+.|..|...+ ++.+.+
T Consensus 16 ~~l~~l~~~w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~G----lI~r~~ 71 (146)
T 2f2e_A 16 RPLDVIGDGWSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHG----VMVAVP 71 (146)
T ss_dssp TTHHHHCSSSHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred HHHHHhCCchHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEEEe
Confidence 3344444444455554433 4579999999999999999999999999988 887653
No 148
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=70.00 E-value=5.8 Score=29.98 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=34.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..+.-|..|+.++ ...+|.+||++.+|++...++.++.....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677888888777 56799999999999999998888776653
No 149
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=69.84 E-value=8.2 Score=31.37 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHhc-CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 124 YQMCVLLLFNNREKLTYEEIQSET-DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 124 ~Qa~ILllFN~~~~lt~~eL~~~t-gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.-+.||.... .+..++.||++.+ ||+...|.+.|..|...+ ++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~G----LV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADG----IVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCC----CEEEE
Confidence 3455665544 5789999999999 999999999999999988 88764
No 150
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=69.15 E-value=7.5 Score=29.25 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=36.2
Q ss_pred EEEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 118 IIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 118 ~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
....|.-|..||.++- ..+|..||++.+|++...++.++..+..
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567888888887776 5799999999999999999999887754
No 151
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=68.14 E-value=3.2 Score=31.21 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=35.3
Q ss_pred EchHHHHHHHHhc-CCCC---CCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 121 VSTYQMCVLLLFN-NREK---LTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 121 vs~~Qa~ILllFN-~~~~---lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
.+.-++.||+.+- ..+. +|..+|++.+|++...+.+.|..|...+
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G 58 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAK 58 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCc
Confidence 4555666665542 2233 9999999999999999999999999887
No 152
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=67.33 E-value=8 Score=29.63 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHhc-CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 126 MCVLLLFNNREKLTYEEIQSET-DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 126 a~ILllFN~~~~lt~~eL~~~t-gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
..||.... .+.+++.||++.+ |++...+-++|..|...+ ++.+.
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G----lV~r~ 72 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKG----LIKKK 72 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCC----CEEEe
Confidence 34554443 5679999999999 599999999999999988 87764
No 153
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=67.14 E-value=8.3 Score=33.57 Aligned_cols=65 Identities=11% Similarity=0.259 Sum_probs=47.0
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCC-CCCCCCCeEEEecC
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKT-KEIEPNHVFFVNDS 191 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~-~~i~~~~~f~lN~~ 191 (331)
+..+..||.+.. .+.+++.||++.+|++...+-.+|..|...| ++...... ..-.+...|.++..
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~G----LV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAG----LIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEECCBTTBCCCEEEEECTT
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----ceEEEeeccCCCCceEEEEEChH
Confidence 456677776664 4679999999999999999999999999998 88764321 11123345666654
No 154
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.95 E-value=7.7 Score=27.08 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.3
Q ss_pred chHHHHHHH-Hh--cCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 122 STYQMCVLL-LF--NNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 122 s~~Qa~ILl-lF--N~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
+.-|-.|+. .| ++.+.+|++||++.+|++...+...+..-.
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444555553 33 335679999999999999998887766544
No 155
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=66.72 E-value=9.9 Score=35.32 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 124 YQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 124 ~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
.+..||.++++...+|.+||++.+|++...+.+.|..|-..+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G 47 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWG 47 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 456678777888889999999999999999999999998776
No 156
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=66.28 E-value=5.5 Score=31.97 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=35.3
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHhCCc--c-----ccccchHHHHHHHH---HHHHhhhhCCCC
Q psy11818 255 QLKSRFLPSPVIIKKRIESLIEREYLARTPE--D-----RFLQEKDVFERYYK---QHLAKRLLLDKS 312 (331)
Q Consensus 255 ~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~--d-----~~i~~~~~~~~~~~---~~~~~~~~~~~~ 312 (331)
++..+...+...|.++|..|+++|||.|..+ + ....=.++|+++.. ..-.+...++|.
T Consensus 56 ~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~~~~~~~~~~~~~~~~~ 123 (128)
T 2vn2_A 56 ELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLVHHLYTQAAQQGELGRQ 123 (128)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444567899999999999999999999533 2 12344567776643 333344444443
No 157
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=66.08 E-value=6.5 Score=31.16 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=43.1
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhc--CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSET--DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~t--gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+....-.||.+......+|..+|++.+ |++...+.++|..|...+ ++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G----LV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHD----LLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT----SEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC----CEEec
Confidence 455677888888776799999999999 999999999999999998 88764
No 158
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=65.98 E-value=7.4 Score=26.24 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
.|+.++ ...+|..||++.+|++...+..++.....
T Consensus 5 ~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 5 QVLKLI--DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHH--HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444 34689999999999999999888876643
No 159
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=65.65 E-value=8.2 Score=24.12 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 126 MCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 126 a~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
..|+.++. +.+|..+|++.+|++...+.+.+..+
T Consensus 12 ~~i~~~~~--~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKL--LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 35555554 35899999999999999988877543
No 160
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=65.08 E-value=5.1 Score=29.06 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=40.6
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
+..|.+++-..+.++..+|...+... -..+..-|...|+.|.++|||.|..+
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec
Confidence 45566666667889999998887642 23577889999999999999999764
No 161
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=64.52 E-value=7.4 Score=31.34 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=38.6
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhc-CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSET-DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~t-gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
....+.||.... .+.+++.||++.+ |++...+-+.|..|...+ ++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~G----lV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDG----FLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHT----CEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCC----cEEEE
Confidence 344455665554 5679999999999 799999999999999988 88764
No 162
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=63.73 E-value=6.4 Score=29.29 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=32.5
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.-|..|+.++ ...+|..||++.+|++...++.++....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466677777666 4579999999999999999988887664
No 163
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.56 E-value=11 Score=30.76 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=50.8
Q ss_pred EEEchHHHHHHHHhcC-CCCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 119 IQVSTYQMCVLLLFNN-REKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~-~~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.+|.....||..+.+ ...+|.+||.+.+ +++...+-++|..|...+ ++.+...+ .....|.++.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G----lv~~~~~~---~~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG----LVKELTYG---DASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT----SEEEECCT---TSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC----CEEEEeeC---CCceEEECCC
Confidence 4678888899977754 5679999999999 899999999999999998 88765321 1235677764
No 164
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=63.39 E-value=7.3 Score=34.86 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
++|+.-=.++..|.++|++.+|++..++..+|..|...+ ++.+.
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~----~v~~~ 211 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFV----PVKII 211 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTS----CEEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcC----CeEEe
Confidence 333333335789999999999999999999999999987 77554
No 165
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=63.35 E-value=13 Score=34.48 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.+|++||++.+|++...+.+.|..|+..+ +|.+. ++.|.++.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~g----ll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMR----VINLE--------DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCC----CeEee--------CCeEecCH
Confidence 689999999999999999999999999988 98874 23677764
No 166
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=63.07 E-value=10 Score=30.38 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=43.9
Q ss_pred EEEchHHHHHHHHhc-CCCCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFN-NREKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN-~~~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|.....||..|. ..+.+|.+||.+.+ +++...+-++|..|...+ ++.+.
T Consensus 7 ~r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G----lv~~~ 64 (131)
T 2o03_A 7 VRSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG----LVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT----SEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC----CEEEE
Confidence 456777888887775 45689999999998 899999999999999998 87764
No 167
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=62.85 E-value=10 Score=29.28 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=24.3
Q ss_pred HHHHHh--cCCCCCCHHHHHHhcCCCHHHHHHHHH
Q psy11818 127 CVLLLF--NNREKLTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 127 ~ILllF--N~~~~lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
.|.+.| ++.+.+|++||++.+|++...++..+.
T Consensus 27 Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 27 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344555 334789999999999999887766543
No 168
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=62.70 E-value=10 Score=30.56 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEchHHHHHHHHhcCC--CCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 119 IQVSTYQMCVLLLFNNR--EKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~--~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.+|.....||..+.+. ..+|.+||.+.+ +++...+-++|..|...+ ++.+...+ .....|.++.
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G----lv~~~~~~---~~~~~Y~~~~ 85 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG----LVVRHNFD---GGHAVFELAD 85 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT----SEEEECSS---SSSCEEEESS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC----cEEEEEeC---CCceEEEeCC
Confidence 46788888999777653 579999999998 899999999999999998 88764321 1235677653
No 169
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.45 E-value=8.4 Score=29.80 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=43.8
Q ss_pred EEchHHHHHHHHhcC--CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNN--REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~--~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.++..|..|+-+..+ +..++..||...++|+...+.+.|..|...+ ++...
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~----lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKK----LIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCC----CEEEe
Confidence 568899999987765 6779999999999999999999999998876 77654
No 170
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=61.10 E-value=11 Score=35.26 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
.+.+|++||++.+|+++..+.+.|..|+..+ +|... ++.|..+.
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g----~l~~~--------~~~y~~t~ 91 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIG----TILLE--------EDRYVLAK 91 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEEE--------TTEEEECH
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCC----CeEec--------CCEEeccc
Confidence 4689999999999999999999999999887 88763 34666654
No 171
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=60.85 E-value=59 Score=28.59 Aligned_cols=51 Identities=16% Similarity=-0.023 Sum_probs=44.7
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+..|..|+......+.+|..+|+..+|.+....+..|..+...+ ++.++.
T Consensus 152 ~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G----~l~~D~ 202 (218)
T 3cuq_B 152 EEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMG----HLCRDD 202 (218)
T ss_dssp GGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred hHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcC----CEEEEC
Confidence 346888998777778899999999999999999999999999888 888763
No 172
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=60.77 E-value=11 Score=34.27 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.+|++||++.+|++...+.+.|..|+..+ +|... ++.|.++.
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g----~l~~~--------~~~y~~t~ 80 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIG----FMTKQ--------AEGYRLTS 80 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcC----CeEec--------CCEEecCH
Confidence 689999999999999999999999999988 88753 34676653
No 173
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.14 E-value=14 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=27.0
Q ss_pred chHHHHHH-HHh--cCCCCCCHHHHHHhcCCCHHHHHHHHHH
Q psy11818 122 STYQMCVL-LLF--NNREKLTYEEIQSETDIPERDLIRALQS 160 (331)
Q Consensus 122 s~~Qa~IL-llF--N~~~~lt~~eL~~~tgi~~~~l~~~L~s 160 (331)
+.-|-.|+ +.| ++.+.+|+.||++.+|++...+...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 333 3336799999999999999887765543
No 174
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.79 E-value=2.3 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 232 AVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 232 aIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
.|...++.++.++..+|. ..|..+...|.+-|+.|.++|+|.|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA--------~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLS--------ARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHH--------HHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 466677777777776543 348899999999999999999999974
No 175
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.68 E-value=13 Score=30.58 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=43.5
Q ss_pred EEEchHHHHHHHHhcC-CCCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFNN-REKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~-~~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|.....||..|.+ .+.+|.+||.+.+ +++...+-++|..|...| ++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G----lv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN----FISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC----cEEEE
Confidence 6788889999977754 5689999999998 799999999999999998 87654
No 176
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=59.36 E-value=9.8 Score=27.48 Aligned_cols=52 Identities=4% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHHHHhhhcc--cCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 231 AAVVRIMKAR--KRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 231 AaIVRIMK~~--K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
.+|..++... +.++..+|...+.+.. ...+..-|-+.|+.|.+.|+|.|...
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 4566777665 6899999888886543 35688999999999999999998654
No 177
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=59.04 E-value=7 Score=29.59 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=33.5
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcc
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMG 164 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~ 164 (331)
+.....||..+-..+.+++.||++.+|++...+-++|..|...
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4556667633333467999999999999999999999998653
No 178
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=58.27 E-value=16 Score=27.29 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCC-CHHHHHHHHHHHHcccCcccceeec
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDI-PERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi-~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.|--+.|+...+|+.+|++.+|+ +++++..+|.=|..-+ +|....
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREd---KI~~~~ 59 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLRED---KVVTSE 59 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTT---CEEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcC---ceEEEe
Confidence 34456677789999999999999 9999999999887654 365543
No 179
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=57.92 E-value=15 Score=33.40 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=36.7
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEe
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVN 189 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN 189 (331)
+.+|++||++.+|++...+.+.|..|+..+ +|.+.. .+.|..+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g----~l~~~~-------~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFE----IFQGDT-------RDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET-------TTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCC----ceEecC-------CCeEecC
Confidence 679999999999999999999999999988 887642 3467665
No 180
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=57.86 E-value=12 Score=34.51 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
.+.+|++||++.+|++...+.+.|..|+..+ ++.... .+.|.++.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g----~~~~~~-------~g~y~~t~ 94 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIG----LLEEDA-------PGEFVPTE 94 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE-------TTEEEECT
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCC----CEEecC-------CCeEEeCH
Confidence 4679999999999999999999999999988 887642 34577664
No 181
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=57.59 E-value=18 Score=32.93 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|++||++.+|+++..+.+.|..|+..+ |+...
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~~g----l~~~~ 71 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVAVG----LFTRD 71 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCC----cEEec
Confidence 589999999999999999999999999887 88864
No 182
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=57.20 E-value=19 Score=33.96 Aligned_cols=64 Identities=6% Similarity=0.088 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCC---CCCCCCCeEEEecCCC
Q psy11818 126 MCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKT---KEIEPNHVFFVNDSFT 193 (331)
Q Consensus 126 a~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~---~~i~~~~~f~lN~~F~ 193 (331)
..||-+.-.+..+|-.||++.||++...+.+.+..|+..+ ++...... ..=.+...+.+|.++.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g----~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAH----LVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHT----SEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----cEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 4577666677889999999999999999999999999987 77664321 1112345577777653
No 183
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=56.83 E-value=7.4 Score=30.05 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=40.2
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
..|..++...+.++..+|...+... ...+.+-+...|+.|.++|||.|..+|+
T Consensus 13 ~~vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~r 65 (123)
T 1okr_A 13 WEVMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDNK 65 (123)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecCC
Confidence 4455555557789999888887543 2356788999999999999999976654
No 184
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=55.86 E-value=8.4 Score=33.31 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 124 YQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 124 ~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
-|-.|+.+.+.+..+|.+||++.+|+++..+++=|.-|-...
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 477899999999999999999999999999999999997665
No 185
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=55.74 E-value=11 Score=30.93 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=44.7
Q ss_pred EEEchHHHHHHHHhcCC--CCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFNNR--EKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~--~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|.....||..+.+. ..+|.+||.+.+ +++...+-++|..|...+ ++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G----lv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG----IVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC----cEEEE
Confidence 56788889999888654 579999999998 899999999999999998 88754
No 186
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=55.64 E-value=8.8 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 127 CVLLLFNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 127 ~ILllFN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.|+..+...+.+ +..+|++.+|++...+.++|.-|...+ ++...+
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~G----lI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAG----VIESRS 77 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEEe
Confidence 344445556667 999999999999999999999999887 776543
No 187
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=55.34 E-value=16 Score=33.45 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|++||++.+|+++..+.+.|..|+..+ +|.+.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~g----ll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALG----LLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCC----CeEec
Confidence 89999999999999999999999999987 98874
No 188
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=55.25 E-value=36 Score=25.66 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 126 MCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 126 a~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+-||..... + ++..+|+..+|++...+...+..|...+ ++.+.
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~~G----LI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMDLE----IIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHHCC----CeEEE
Confidence 344544443 3 9999999999999999999999999987 77664
No 189
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=54.74 E-value=14 Score=28.30 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=33.6
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..|.-|..||.++- ..+|.+||++.+|++...++..+..+..
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35777777776653 5789999999999999999888876643
No 190
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=53.79 E-value=19 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=27.8
Q ss_pred chHHHHHH-HHh--cCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 122 STYQMCVL-LLF--NNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 122 s~~Qa~IL-llF--N~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
+.-|-.|+ +.| .+.+.+|+.||++.+|++...++..+.--
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444 333 34467999999999999998877765543
No 191
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=53.66 E-value=7.3 Score=28.59 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=38.9
Q ss_pred HHHHHHhhhccc---CCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 230 EAAVVRIMKARK---RMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 230 qAaIVRIMK~~K---~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
+-.|..+|+... .++..+|-..+ ..+...|.+.|..|.+.|+|++.++.|
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 345778899888 88888665444 256778999999999999999976554
No 192
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=53.54 E-value=20 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.1
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHH
Q psy11818 136 EKLTYEEIQSETDIPERDLIRAL 158 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L 158 (331)
..+|..||++.+|++...+.+.+
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45799999999999999888765
No 193
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=53.25 E-value=14 Score=30.48 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+++.....++..+|-+.+ ..+...+.++|+.|.+.|+|+|.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 567899999999999999776655 46888999999999999999974
No 194
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=53.20 E-value=20 Score=27.98 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=51.8
Q ss_pred hhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 224 DRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 224 dR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-++-.++.+|..++. ++.++--+|.+.+.+.....+.++...+-..+..|-++|||++..
T Consensus 8 ~~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~ 67 (116)
T 3f8b_A 8 MLRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYW 67 (116)
T ss_dssp HHHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 345668889999887 478999999999988777778999999999999999999999863
No 195
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=52.87 E-value=12 Score=27.86 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHHHhhhccc---CCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 229 IEAAVVRIMKARK---RMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 229 IqAaIVRIMK~~K---~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
++-.|..+|+... .++..+|-..+- .+...|.++|..|.+.|+|++.+..+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--------vsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 3455778888888 899886655542 56788999999999999999866544
No 196
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=52.78 E-value=10 Score=34.95 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.6
Q ss_pred hcCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 132 FNNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 132 FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
.+..+.+|+++|++.|||..+++..+|+.|
T Consensus 203 ~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 203 VEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 344678999999999999999999999987
No 197
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=52.69 E-value=13 Score=34.31 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+.+|++||++.+|++...+.+.|..|+..+ ++...
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~G----ll~~~ 82 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLTVVG----VLEGG 82 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTT----SEECC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCC----CEEEe
Confidence 4679999999999999999999999999988 88763
No 198
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=52.46 E-value=15 Score=31.08 Aligned_cols=42 Identities=7% Similarity=0.185 Sum_probs=34.7
Q ss_pred HHHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 124 YQMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 124 ~Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
-+..||.++.. ...+|..||++.+|++...+.+.|..|-..+
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G 64 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLG 64 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34566766654 4569999999999999999999999998766
No 199
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.18 E-value=21 Score=26.29 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=25.6
Q ss_pred hHHHHHHHH-hcCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 123 TYQMCVLLL-FNNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 123 ~~Qa~ILll-FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
.-|-.|+.+ | ...+|+.||++.+|++...++..+.-.
T Consensus 40 ~~~r~vl~l~~--~~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 40 AEHRAVIQRSY--YRGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp HHHHHHHHHHH--TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444433 4 346899999999999998877665543
No 200
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.71 E-value=23 Score=24.15 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=26.8
Q ss_pred chHHHHHHHH-hcCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 122 STYQMCVLLL-FNNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 122 s~~Qa~ILll-FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
+.-|-.|+.+ |- +.+|..||++.+|++...+...+.-.
T Consensus 17 ~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 17 TTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555555543 43 35899999999999998877665543
No 201
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=51.24 E-value=14 Score=30.37 Aligned_cols=58 Identities=3% Similarity=0.101 Sum_probs=49.3
Q ss_pred hhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 226 KHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 226 ~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
.-.++.+|..++.. +.++-.+|.+++.+.....+.++...|-..+..|.++|||++..
T Consensus 39 ~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 39 RGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 34577888888864 78999999999988777678899999999999999999999864
No 202
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=50.57 E-value=5.2 Score=30.41 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=34.0
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+...+.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 29 l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~G----li~~~~ 69 (102)
T 1v4r_A 29 LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEG----LVSSRG 69 (102)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSS----CCEEET
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEeC
Confidence 4456677 999999999999999999999999887 776654
No 203
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=50.48 E-value=19 Score=28.92 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 134 NREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 134 ~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
..+.++..+|++.+|++...+.++|..|...| ++.+.
T Consensus 51 ~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~G----lv~r~ 87 (155)
T 2h09_A 51 EVGEARQVDMAARLGVSQPTVAKMLKRLATMG----LIEMI 87 (155)
T ss_dssp HHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT----CEEEE
T ss_pred hCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCC----CEEEe
Confidence 34678999999999999999999999999887 77654
No 204
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=50.46 E-value=12 Score=27.56 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=38.7
Q ss_pred hHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 228 EIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 228 ~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
..+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||.|..+
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEee
Confidence 3456667777667788888776655 4678889999999999999999654
No 205
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=49.62 E-value=13 Score=27.61 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
+..|...+...+.++..+|...+. ..+..+.+.+-+.|..|.++|||+|..+
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 344555555567788777765543 3466789999999999999999999654
No 206
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=49.36 E-value=23 Score=32.68 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
.+.+|++||++.+|++...+.+.|..|+..+ +|.+. ++.|..+.
T Consensus 53 ~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g----~l~~~--------~~~y~~t~ 96 (348)
T 3lst_A 53 DGPRTPAELAAATGTDADALRRVLRLLAVRD----VVRES--------DGRFALTD 96 (348)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE--------TTEEEECT
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCC----CEEec--------CCEEecCH
Confidence 3579999999999999999999999999887 88772 34566664
No 207
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=48.60 E-value=13 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 134 NREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 134 ~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
..+.+|++||++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 4568999999999999999999999987
No 208
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=48.46 E-value=14 Score=30.14 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=43.5
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|.....||..+.+.+.+|.+||.+.+ +++...+-++|..|...| ++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G----lv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELG----LVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT----SEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC----cEEEE
Confidence 56788888998777654589999999887 689999999999999998 77654
No 209
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=48.18 E-value=29 Score=30.04 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+|+.+-..++.++..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~G----lV~r~~ 54 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEE----LLIKDK 54 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCC----CEEEec
Confidence 444444567789999999999999999999999999987 877653
No 210
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=47.99 E-value=8.4 Score=29.86 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
-|..|.+++-..+.++..+|...+.. ....+.+-|...|+.|.++|||.|..+++
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r 65 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSEN 65 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCCC
Confidence 34556666666778888887777642 13457788999999999999999976543
No 211
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=47.83 E-value=12 Score=27.66 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=40.3
Q ss_pred hhhhhHHHHHHHhhhcc--cCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcccccc
Q psy11818 224 DRKHEIEAAVVRIMKAR--KRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQ 290 (331)
Q Consensus 224 dR~~~IqAaIVRIMK~~--K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i~ 290 (331)
+|...|=..|-+.++.+ ...+..||.+.+ ..+..-|.+-|..|-++|||.|+...+.+.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~l--------gvS~~TVrr~L~~Le~kG~I~R~~ggr~~~ 64 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAA--------GLSIYQVRLYLEQLHDVGVLEKVNAGKGVP 64 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESCSSSSC
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEecCCCCCcH
Confidence 34455555555555554 677777655443 235677999999999999999997765543
No 212
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=47.38 E-value=11 Score=34.79 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=21.1
Q ss_pred cCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 133 NNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 133 N~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
+..+.+|++||+++|||..+++..+|+.|
T Consensus 204 ~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 204 DFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp -------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 34568999999999999999999999987
No 213
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.15 E-value=25 Score=29.86 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=38.8
Q ss_pred EchHHHHHHHHhc----C-CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 121 VSTYQMCVLLLFN----N-REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 121 vs~~Qa~ILllFN----~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.|.-|..||.... + .-..|+.||++.+|++...+.++|..|...+ .+.+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G----~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKG----YIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEECC-
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCC----CEEecC
Confidence 3556777775543 2 2368999999999999989999999999887 666543
No 214
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=46.22 E-value=4.4 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=38.5
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcc
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPED 286 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d 286 (331)
|..|.+++-..+.++..+|.+.+.. .-..+..-|...|+.|.++|||+|..+.
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~g 89 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKEG 89 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEET
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeCC
Confidence 4455666666677888877666532 1245788899999999999999997543
No 215
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=46.05 E-value=20 Score=25.85 Aligned_cols=45 Identities=4% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
..|.+.+...+.++..+|.+.+ ..+...+.+.|..|.+.|+|++.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~l--------gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEAL--------AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3466777777778877665543 35778899999999999999954
No 216
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=45.40 E-value=15 Score=33.91 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=23.9
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
.+|++||+++|||..+++..+|+.|
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 7999999999999999999999987
No 217
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=45.24 E-value=27 Score=27.02 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=33.7
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++.+|++...+.++|..|...| ++...+
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G----li~~~~ 67 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDN----VIEKRR 67 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEec
Confidence 3345667 999999999999999999999999888 776543
No 218
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=44.80 E-value=18 Score=28.61 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|.+.+ ..+...+.++|..|.+.|+|.|.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEecc
Confidence 355677788777888888776655 24788899999999999999875
No 219
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=44.39 E-value=26 Score=32.13 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCccccee
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILI 172 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~ 172 (331)
++..+......+.+|.+||++.+|++...+.+-|..|-..+ ++.
T Consensus 9 ~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G----~v~ 52 (315)
T 2w48_A 9 LIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQG----IVT 52 (315)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEE
Confidence 33444344445669999999999999999999999998887 775
No 220
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=44.04 E-value=11 Score=30.07 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh----CCccccc-------cchHHHHH
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLAR----TPEDRFL-------QEKDVFER 297 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~R----d~~d~~i-------~~~~~~~~ 297 (331)
-+..|...+ ..+.++..+|...+ ..+.+.+-+.|..|.++|||+| ++.|+-. .++.++..
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 345566666 67788888766554 2455668899999999999998 6665532 34555655
Q ss_pred HHHHH
Q psy11818 298 YYKQH 302 (331)
Q Consensus 298 ~~~~~ 302 (331)
.....
T Consensus 110 ~~~~~ 114 (151)
T 3kp7_A 110 RKAIM 114 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 221
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=43.56 E-value=21 Score=33.47 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCC--CCCCCCCCeEEEecCCC
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPK--TKEIEPNHVFFVNDSFT 193 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~--~~~i~~~~~f~lN~~F~ 193 (331)
+..+|-.||++.||++...+.+.+..|+..+ ++..... +..=.+...+.+|.++.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~g----li~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEKG----IVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEEEECCC----CCCEEEEECGGGC
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEeecCCCCCCCCCceEEEEccCCC
Confidence 5689999999999999999999999999988 7765432 11113445677777753
No 222
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.64 E-value=30 Score=27.89 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=49.5
Q ss_pred EEEchHHHHHHHHhcC-CCCCCHHHHHHhc-----CCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 119 IQVSTYQMCVLLLFNN-REKLTYEEIQSET-----DIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~-~~~lt~~eL~~~t-----gi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.+|....+||..+.+ .+.+|.+||.+.+ +++...+-++|..|...+ ++.+...+ .....|.++.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G----lv~~~~~~---~g~~~Y~~~~ 80 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG----EVDVLRTA---EGESVYRRCS 80 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT----SSEEEECT---TSCEEEECCS
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC----CEEEEEcC---CCceEEEECC
Confidence 5778888999977765 4689999999988 689999999999999998 77654311 1124566654
No 223
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=41.92 E-value=92 Score=25.88 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=35.3
Q ss_pred HHHHHH-HhcCC-CCCCHHHHHHhcC-CCHHHHHHHHHHHHcccCcccceee
Q psy11818 125 QMCVLL-LFNNR-EKLTYEEIQSETD-IPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 125 Qa~ILl-lFN~~-~~lt~~eL~~~tg-i~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
...||. +.... ...|++||.+.++ |+...+.++|..|...+ ++..
T Consensus 31 R~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaG----LV~~ 78 (151)
T 3u1d_A 31 RLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRG----IVEK 78 (151)
T ss_dssp HHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT----SEEE
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCC----CeEE
Confidence 344443 33443 4589999999999 99999999999999998 7764
No 224
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=41.90 E-value=61 Score=30.04 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHh--cCCCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 127 CVLLLF--NNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 127 ~ILllF--N~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
.||.++ ++...+|.++|++.+|++...+.++++.|-..+
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G 47 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEG 47 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 456555 556789999999999999999999999998776
No 225
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=41.58 E-value=12 Score=29.94 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=39.7
Q ss_pred HHHHHHHhhhc-ccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 229 IEAAVVRIMKA-RKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 229 IqAaIVRIMK~-~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
-|..|.+++-. ...++..+|...+... -..+..-|...|+.|.++|||.|..+++
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~~~r 65 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIRDDR 65 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 45666777766 5788888777766432 2357888999999999999999976443
No 226
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=41.02 E-value=19 Score=28.53 Aligned_cols=45 Identities=9% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLAR 282 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~R 282 (331)
+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 44455555555666666655544 3577889999999999999999
No 227
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=40.96 E-value=36 Score=27.10 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.9
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~G----li~~~~ 62 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLVEAG----ILYKKR 62 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTT----SEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEEEec
Confidence 3345678 999999999999999999999999887 776653
No 228
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=40.84 E-value=18 Score=33.69 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+.+|++||++.+|+++..+.+.|..|+..+ ++.+.
T Consensus 69 ~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g----~l~~~ 104 (369)
T 3gwz_A 69 EGPRTATALAEATGAHEQTLRRLLRLLATVG----VFDDL 104 (369)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SSEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCC----CEEEe
Confidence 3579999999999999999999999999887 88874
No 229
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=40.81 E-value=45 Score=26.42 Aligned_cols=40 Identities=8% Similarity=0.298 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 124 YQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 124 ~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
....++.+|.. .+|+++|+..-|++..++..+|..++..+
T Consensus 21 t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v~~G 60 (122)
T 3iuo_A 21 MKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIVYSG 60 (122)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 45566677774 68999999999999999999999998765
No 230
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=40.77 E-value=27 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=27.2
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHH
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQS 160 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~s 160 (331)
.+.-|-.|+.+| -+.+|++||++.+|++...+...+.-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555533 46799999999999999887666543
No 231
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=40.51 E-value=31 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHH
Q psy11818 127 CVLLLFNNREKLTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 127 ~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
.|+.++.+ .+|+.+|++.+|++...+.+.+.
T Consensus 13 ~i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 13 QISRLLEK--GHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHHT--TCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHHHc--CCCHHHHHHHHCCCHHHHHHHHH
Confidence 33334443 38999999999999988877654
No 232
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=40.47 E-value=23 Score=33.78 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC-C--CCCCCCCCeEEEecCC
Q psy11818 126 MCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP-K--TKEIEPNHVFFVNDSF 192 (331)
Q Consensus 126 a~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~-~--~~~i~~~~~f~lN~~F 192 (331)
..||-+.-.+..+|..||++.||++...+.+.+..|+..+ ++.... . +..=.+...+.+|+++
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~g----li~~~~~~~~s~~GR~~~~l~~~~~~ 107 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAH----LIHETTVQEAISRGRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEECHHHHHHHTSCCEEEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEeccccCCCCCCCCCeEEEECCCC
Confidence 3466555556789999999999999999999999999987 776543 1 0001234456666654
No 233
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=40.13 E-value=53 Score=23.08 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
|..+=..=|+.+.+.++.+++..|++.+++...|..|-..+ ++..
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG----LI~l 57 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG----LIAV 57 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT----SEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC----Ceec
Confidence 33333444677889999999999999999999999998877 6543
No 234
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=39.38 E-value=31 Score=27.56 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|-+.+ ..+.+.+.++|..|.+.|+|+|.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 455678888888889988776655 35788899999999999999983
No 235
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=38.84 E-value=31 Score=27.34 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=33.6
Q ss_pred cCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 133 NNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 133 N~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
...+.+ |..+|++.+|++...+.++|..|...| ++...+
T Consensus 30 ~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~G----li~~~~ 69 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQK----VIRTIP 69 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEec
Confidence 345678 999999999999999999999999887 776653
No 236
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=38.82 E-value=30 Score=27.83 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLAR 282 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~R 282 (331)
++-.|.+.+.....++..+|-+.+ ..+..-+.++|..|.+.|+|.|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcce
Confidence 345678888888889998776655 3478889999999999999997
No 237
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=38.22 E-value=40 Score=26.56 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 134 NREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 134 ~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
..+.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G----~i~~~~ 71 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAG----YIYAKR 71 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----eEEEec
Confidence 35667 699999999999999999999999988 887653
No 238
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=38.21 E-value=43 Score=24.91 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=39.7
Q ss_pred EEEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 118 IIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 118 ~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
.|.-...+-.++....-...++++.|++.+|++.+.+...|..++..+
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~ 58 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEG 58 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 355556666666666678899999999999999999999999998776
No 239
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=37.57 E-value=24 Score=27.99 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc--ccc-------ccchHHHHHHHH
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE--DRF-------LQEKDVFERYYK 300 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~--d~~-------i~~~~~~~~~~~ 300 (331)
+..|..++...+.++..+|... +..+.+.+-+.|..|.++|||+|..+ |.- -.++.++..++.
T Consensus 43 q~~iL~~l~~~~~~~~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 114 (149)
T 4hbl_A 43 QYLVMLTLWEENPQTLNSIGRH--------LDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFE 114 (149)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHH
Confidence 3444444444555555544443 34678889999999999999998643 321 134556666554
Q ss_pred HH
Q psy11818 301 QH 302 (331)
Q Consensus 301 ~~ 302 (331)
..
T Consensus 115 ~~ 116 (149)
T 4hbl_A 115 AI 116 (149)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 240
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=37.40 E-value=20 Score=28.14 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=38.1
Q ss_pred hHHHHHHHhhhcccC--CChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 228 EIEAAVVRIMKARKR--MQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 228 ~IqAaIVRIMK~~K~--l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
..+..|..++..... ++..+|...+- .+.+.|-+.|+.|.++|||.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~--------~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLK--------LDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEee
Confidence 346777777776665 89888766552 4788899999999999999985
No 241
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=37.35 E-value=87 Score=25.01 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 130 LLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 130 llFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
.+..+ +.-|+..|.+.||||...++..|..|-..+
T Consensus 27 ~lId~-~~~nvp~L~~~TGmPRRTiQd~I~aL~elg 61 (117)
T 3ke2_A 27 HLMDD-ARHNLLSLGKLTGMPRRTLQDAIASFADIG 61 (117)
T ss_dssp HHHHH-SCCCHHHHHHHHCCCHHHHHHHHHTGGGGT
T ss_pred HHHhc-CCCCHHHHHHHHCCCHhHHHHHHHHhhhCC
Confidence 33344 556999999999999999999999998665
No 242
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.73 E-value=29 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=37.0
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
+-.|.+.+.....++..+|.+.+ ..+..-+.++|..|.++|+|+|.
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeee
Confidence 44677788888889988776655 34788899999999999999973
No 243
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=36.19 E-value=33 Score=28.65 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|-+.+ ..+...+.++|..|.+.|+|+|.
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEee
Confidence 455788888888899999777655 24788899999999999999874
No 244
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=36.12 E-value=32 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|-+.+ ..+.+-+.++|..|.++|+|+|.
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKI--------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 344677888888889988766554 35788899999999999999874
No 245
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=35.95 E-value=38 Score=29.66 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=35.5
Q ss_pred HhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 131 LFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 131 lFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+...+.++..+|++.+|++...++.+|..|...| ++...|
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~G----lv~~~~ 83 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEAQS----LLRVET 83 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEeC
Confidence 34567889999999999999999999999999887 877654
No 246
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=35.78 E-value=48 Score=27.20 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g----~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQN----LISAH 200 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCC----cEEeC
Confidence 47899999999999999999999999887 88764
No 247
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=35.48 E-value=53 Score=28.92 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=74.6
Q ss_pred cEEEEEchHHHHHHHHhcCCCCCCHHHHHHhcC-------CCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEE
Q psy11818 116 KHIIQVSTYQMCVLLLFNNREKLTYEEIQSETD-------IPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFV 188 (331)
Q Consensus 116 ~~~l~vs~~Qa~ILllFN~~~~lt~~eL~~~tg-------i~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~l 188 (331)
.++|-+-....|.-..=-+.+-+++.|+-...+ ++++++.+++..|-.-+.+ |.+
T Consensus 74 ~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~------------------~~l 135 (218)
T 3cuq_B 74 HMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLP------------------LRL 135 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCS------------------EEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCC------------------EEE
Confidence 345666666666654333456789998887764 8999999999877543311 333
Q ss_pred ecCCCCCceeEEEeccccCCCChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHH
Q psy11818 189 NDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIK 268 (331)
Q Consensus 189 N~~F~~k~~ki~i~~~~~k~e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IK 268 (331)
-. |.+ .+.-|..++. + ....++.|..++...+.++..+|.. .|..+....+
T Consensus 136 ~~-~~s--g~~vvqs~~~--~----------------~~~~~~~il~~~~~~g~vt~~~la~--------~l~ws~~~a~ 186 (218)
T 3cuq_B 136 RV-FDS--GVMVIELQSH--K----------------EEEMVASALETVSEKGSLTSEEFAK--------LVGMSVLLAK 186 (218)
T ss_dssp EE-CTT--SBEEEEETTC--C----------------GGGGHHHHHHHHHHTSCBCHHHHHH--------HHTCCHHHHH
T ss_pred EE-ECC--CcEEEEcCCC--c----------------hHHHHHHHHHHHHHCCCcCHHHHHH--------HhCCCHHHHH
Confidence 21 332 2333443311 1 0112233334444467777665443 3467888899
Q ss_pred HHHHHHHHHHHHHhCCc
Q psy11818 269 KRIESLIEREYLARTPE 285 (331)
Q Consensus 269 k~IE~LIereyI~Rd~~ 285 (331)
..|+.++.+|++-||+.
T Consensus 187 e~L~~~e~~G~l~~D~~ 203 (218)
T 3cuq_B 187 ERLLLAEKMGHLCRDDS 203 (218)
T ss_dssp HHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHcCCEEEECC
Confidence 99999999999999964
No 248
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=35.25 E-value=65 Score=28.82 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=45.6
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+.+.-|+.||.+-...+.+|..+|+..+|.+....+.+|..++..+ ++-.+.
T Consensus 151 el~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~G----llwvD~ 202 (234)
T 3cuq_A 151 ELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEG----LAWLDL 202 (234)
T ss_dssp CCCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHT----SCEEES
T ss_pred ccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCC----CEEEeC
Confidence 4778999998766778899999999999999999999999999888 777653
No 249
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=35.08 E-value=50 Score=29.54 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=45.3
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+.-|+.||.+-...+.+|..+|+..+|.+....+.+|..++..+ ++-.+
T Consensus 164 el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G----~lwvD 214 (233)
T 1u5t_A 164 ELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANG----LLWID 214 (233)
T ss_dssp CCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTT----SSEEE
T ss_pred ccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEEe
Confidence 4788899999776778899999999999999999999999999888 77665
No 250
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.04 E-value=32 Score=26.64 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHhh-hcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIM-KARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIM-K~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+ .....++..+|...+ ..+.+.+-+.|..|.++|||.|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 44555555 566677777665543 457888999999999999999964
No 251
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=35.04 E-value=41 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
+-.|.+.+.....++..+|-+.+ ..+..-+.++|..|.+.|+|.|.
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 44677888888889998766654 35788899999999999999874
No 252
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.00 E-value=24 Score=28.70 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
..|...+.....++..+|... ...+.+.+-+.|..|.++|||.|.
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATL--------LGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEEec
Confidence 344444444445555544433 346788899999999999999994
No 253
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=34.82 E-value=34 Score=27.46 Aligned_cols=47 Identities=23% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|-+.+ ..+.+-+.++|..|.+.|+|.|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 455677888878889998776655 34778899999999999999874
No 254
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=34.60 E-value=37 Score=26.43 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=33.6
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+.... ++..+|...+ ..+.+-+-+.|..|.++|||.|..
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344555666666 8888766655 357788999999999999999865
No 255
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=34.40 E-value=29 Score=29.09 Aligned_cols=57 Identities=7% Similarity=0.165 Sum_probs=46.9
Q ss_pred hHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 228 EIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 228 ~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
.++-+|..++.. +.++-.+|.+.+...+...+.++.+.|-..+..|-+.|+|++...
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~ 58 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLE 58 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEee
Confidence 356677777764 789999999888766655568999999999999999999998653
No 256
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=34.28 E-value=23 Score=26.47 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=33.5
Q ss_pred HHHHHHHhcC-CCCCCHHHHHHhcCCCHHHHHHHHHHHHccc
Q psy11818 125 QMCVLLLFNN-REKLTYEEIQSETDIPERDLIRALQSLAMGK 165 (331)
Q Consensus 125 Qa~ILllFN~-~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k 165 (331)
.=-||-.+.+ ...+...||++.+|++.+++-++|..|-+.+
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3356655554 4679999999999999999999999997665
No 257
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.25 E-value=47 Score=27.95 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=20.2
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHH
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
+.+|++||++.+|++...+...+.
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 479999999999999988766553
No 258
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=34.18 E-value=54 Score=28.29 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=34.6
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..|.-|.-||.++ ...+|.+||++.+|++...++.++.....
T Consensus 173 ~Lt~~e~~vl~~~--~~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 173 WLDPKEATYLRWI--AVGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677777777765 36799999999999999999999887653
No 259
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=34.11 E-value=32 Score=27.19 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-+..|..++...+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34555666666666776655443 3467888999999999999999864
No 260
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.04 E-value=36 Score=30.06 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=31.4
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.-|-.|+.++ .+.+|.+||++.+|++...++.++.-..
T Consensus 198 L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 198 LSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666677666 3789999999999999999888776553
No 261
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=33.66 E-value=40 Score=31.24 Aligned_cols=36 Identities=11% Similarity=-0.039 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
...+|++||++.+|++...+.+.|..|+..+ ++...
T Consensus 41 ~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~g----ll~~~ 76 (353)
T 4a6d_A 41 PGPLDVAAVAAGVRASAHGTELLLDICVSLK----LLKVE 76 (353)
T ss_dssp SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCC----CEEEe
Confidence 4679999999999999999999999999887 88654
No 262
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=33.03 E-value=52 Score=26.05 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=34.6
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++.+|++...++++|..|...+ ++...+
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eG----lv~~~~ 72 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKAYQELERQE----VIITVK 72 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCC----cEEEEc
Confidence 4456778 899999999999999999999999888 887654
No 263
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=32.69 E-value=23 Score=27.70 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
..|...+...+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALW--------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 334444444455555544433 3467888999999999999999854
No 264
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=32.53 E-value=28 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-+..|...+.....++..+|...+ ..+.+.+.+.|..|.++|||+|..
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 345556666666777777665544 357888999999999999999953
No 265
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.48 E-value=36 Score=27.26 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|-+.+ ..+..-+.++|..|.++|+|.|.
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADIL--------NTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHT--------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 344677888888889988665543 45788899999999999999873
No 266
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=32.40 E-value=70 Score=26.09 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.| ++...
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g----~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQG----LVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEec
Confidence 37999999999999999999999999887 77654
No 267
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.57 E-value=40 Score=27.19 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=26.3
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHH
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
.+.-|-.|+.+. .-+.+|++||++.+|++...++..|.
T Consensus 94 Lp~~~r~vl~L~-~~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 94 MTPLSRQALLLT-AMEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp SCTTHHHHHTTT-SSSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 445455555442 23469999999999999887765553
No 268
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.54 E-value=59 Score=26.50 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.1
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHH
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
+.+|++||++.+|++...++..+.
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHH
Confidence 469999999999999888766554
No 269
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=31.49 E-value=49 Score=28.84 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=33.0
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..|.-|.-||.+. ...+|.+||++.+|++...++.++..+..
T Consensus 175 ~Lt~re~~vl~~~--~~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 175 RLTARETEMLKWT--AVGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666666555 35799999999999999999999988764
No 270
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=31.34 E-value=1.4e+02 Score=21.16 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=38.0
Q ss_pred hhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHH
Q psy11818 226 KHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSP---VIIKKRIESLIER 277 (331)
Q Consensus 226 ~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~---~~IKk~IE~LIer 277 (331)
+..+.++++-||...+.++...+|..++..|.. ..++ ....+.||.+..|
T Consensus 7 ~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~--~~d~~~~d~yR~lLe~v~~~ 59 (64)
T 2oxl_A 7 SAVLGQAVTNLMLSGDNVNNKNIILSLIHSLET--TSDILKADVIRKTLEIVLRY 59 (64)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999963 3333 3345566665543
No 271
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=31.30 E-value=10 Score=35.52 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCccccee
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILI 172 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~ 172 (331)
+.++.-|..||......+.+|..||++.+|++...+.+.|..|-..+ ++.
T Consensus 16 ~~~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~G----lv~ 65 (345)
T 2o0m_A 16 LDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLN----LIE 65 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEE
Confidence 45667788888888888899999999999999999999999998877 665
No 272
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=31.20 E-value=81 Score=23.48 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.+|+++|++.+|++...|.+.+....
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSR 43 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4569999999999999999998877654
No 273
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=30.99 E-value=26 Score=27.38 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-+..|..++...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERV--------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCeEecC
Confidence 445555666556667766655443 357888999999999999999864
No 274
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=30.85 E-value=41 Score=27.96 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=37.9
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
++-.|.+.+.....++..+|-+.+ ..+.+-+.++|..|.++|+|+|.
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQL--------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 344678888888889998776655 35788899999999999999873
No 275
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.82 E-value=45 Score=25.94 Aligned_cols=49 Identities=6% Similarity=-0.037 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
-+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|..+
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKW--------SLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 455566666666667777665443 3577889999999999999998543
No 276
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.78 E-value=29 Score=28.21 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=38.6
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-+|.++|...+.++.++|...+.+.. ...+..-|=+.|+.|.+.|.|.+-.
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTA---SGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTC---TTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhC---CCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 34555555545889998888776443 3568999999999999999999854
No 277
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=30.67 E-value=32 Score=29.17 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHhcCCC-HHHHHHHHH-HHHccc
Q psy11818 123 TYQMCVLLLFNNREKLTYEEIQSETDIP-ERDLIRALQ-SLAMGK 165 (331)
Q Consensus 123 ~~Qa~ILllFN~~~~lt~~eL~~~tgi~-~~~l~~~L~-sL~~~k 165 (331)
.-+++++-+..+...+++++|++.++++ ..++..-+. ..+..|
T Consensus 95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~g 139 (169)
T 3chm_A 95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAG 139 (169)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 3455666444347789999999999999 777766555 454455
No 278
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=30.48 E-value=71 Score=24.92 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 224 DRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 224 dR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-++-.++.+|..++. .+.++--+|...+.+. ..+.++...|=..+..|-+.|||++..
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~~ 64 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIEK 64 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 456778889999887 4789999999998764 455899999999999999999999863
No 279
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=30.38 E-value=72 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=30.6
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g----~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEG----VVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEec
Confidence 47999999999999999999999999887 77654
No 280
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=30.19 E-value=54 Score=28.31 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=32.7
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
.|.-|.-||.++- ..+|.+||++.+|++...++.++.....
T Consensus 176 Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 176 LSPREMLCLVWAS--KGKTASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp CCHHHHHHHHHHH--TTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5666666665553 5789999999999999999999887653
No 281
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.11 E-value=29 Score=27.10 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
-+..|...+-..+.++..+|...+ ..+.+.+-+.|..|.++|||+|..+
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQM--------CRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHH--------C---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 455556666666677777665544 2355668899999999999999644
No 282
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.10 E-value=36 Score=26.99 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
.+..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|.
T Consensus 45 ~~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALFGPKKMKEIAEF--------LSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH--------TTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 34555566655667777765443 346788899999999999999984
No 283
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=30.02 E-value=38 Score=24.59 Aligned_cols=52 Identities=4% Similarity=0.054 Sum_probs=38.5
Q ss_pred hHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 228 EIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 228 ~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
..+..|.+.+...+.++..+|...+ ..+.+.+-+.|..|.+.|||.+..+.+
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l--------~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRIT--------GLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3455677777776678887665544 357788999999999999999875443
No 284
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=29.32 E-value=34 Score=26.04 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHH
Q psy11818 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 125 Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
+-.|+.+.+... +|+.||++.+|++...+.+.|+
T Consensus 9 ~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 9 TIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 344555555444 8999999999999999998875
No 285
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=29.11 E-value=62 Score=26.85 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=30.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.| ++...
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g----~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEG----IIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHT----SEEES
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC----cEEec
Confidence 47889999999999999999999999887 88764
No 286
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=29.08 E-value=48 Score=25.83 Aligned_cols=48 Identities=8% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 41 TEWRIISVLSSASDCSVQKISDIL--------GLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 344555556666677777665443 357788999999999999999864
No 287
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=28.98 E-value=83 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.| ++...
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g----~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEG----LVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEeC
Confidence 68999999999999999999999999887 77653
No 288
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.93 E-value=81 Score=25.81 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 138 LTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 138 lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+|-++|++.+|++.+.+-+.|..|...+ ++...
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g----~I~~~ 179 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREG----YIRSG 179 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEeC
Confidence 7899999999999999999999999887 77653
No 289
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=28.91 E-value=48 Score=26.28 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=32.8
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDRT--------AMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeec
Confidence 44555555556667766655433 357788999999999999999954
No 290
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=28.89 E-value=84 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|...+ ++...
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g----~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSER----MLALD 213 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEeeC
Confidence 58999999999999999999999999887 77654
No 291
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=28.84 E-value=1.8e+02 Score=22.46 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=70.0
Q ss_pred HHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEecCCCCCceeEEEeccccCC
Q psy11818 129 LLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSFTSKLHRVKIQTVAAKG 208 (331)
Q Consensus 129 LllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~~F~~k~~ki~i~~~~~k~ 208 (331)
+-.|.. +..++.|+++.+|++...+...|..|+..| .|. .+..++ .+..
T Consensus 13 ~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G----~l~--------------~i~~~~-------~~~~----- 61 (121)
T 2pjp_A 13 EPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQG----IIT--------------AIVKDR-------YYRN----- 61 (121)
T ss_dssp GGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTT----SEE--------------EEETTE-------EEEH-----
T ss_pred HHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEE--------------EecCCc-------eECH-----
Confidence 334433 567899999999999999999999998876 333 232221 0010
Q ss_pred CChhHHHHhhhhhHHhhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcccc
Q psy11818 209 ESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRF 288 (331)
Q Consensus 209 e~~~e~~~~~~~v~edR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~ 288 (331)
+.-..+...|..+++.++.++..++-..+ ..+......-+|.|=..||-.|.++.+-
T Consensus 62 ---------------~~~~~~~~~l~~~~~~~~~it~ae~Rd~l--------g~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 62 ---------------DRIVEFANMIRDLDQECGSTCAADFRDRL--------GVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHSSEEHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred ---------------HHHHHHHHHHHHHHHHCCCccHHHHHHHH--------CCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 11223344566777888888888665554 2455556678888888888888766543
No 292
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=28.79 E-value=34 Score=26.15 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 225 RKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 225 R~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
++-.++.+|..++.. +.++--+|..++.+ .+.++...+-..+..|-+.|||++..
T Consensus 6 ~~g~l~~~IL~~L~~-~~~~gyel~~~l~~----~~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 6 SALLIEYLILAIVSK-HDSYGYDISQTIKL----IASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp CHHHHHHHHHHHHHH-SCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHH----HhCCCcChHHHHHHHHHHCCCeEEEe
Confidence 345678888888875 67888888777654 47899999999999999999999864
No 293
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=28.74 E-value=80 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=30.3
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 138 LTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 138 lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g----~I~~~ 220 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADG----LLHAR 220 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCC----CEEEC
Confidence 7899999999999999999999999887 88764
No 294
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.70 E-value=1e+02 Score=22.96 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.+++++|++.+|++...|.+.+....
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4579999999999999999998887664
No 295
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.67 E-value=84 Score=23.66 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.+|+++|++.+|++...|.+.+....
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4569999999999999999988777553
No 296
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=28.64 E-value=40 Score=27.76 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 138 LTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 138 lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
=|++||++.+|++.+.|++.+..+
T Consensus 96 dTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 389999999999999999888665
No 297
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=28.62 E-value=16 Score=28.53 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 260 FLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 260 F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
+..+.+.+-+.|..|.++|||.|.
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HCCCHHHHHHHHHHHHHCCCEEec
Confidence 445678889999999999999994
No 298
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=28.55 E-value=38 Score=26.07 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHhhhccc--CCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARK--RMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K--~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|..++.... .++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEF--------SIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH--------CCCcchHHHHHHHHHHCCCEEeeC
Confidence 444555555554 67777665443 357788999999999999999853
No 299
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=28.44 E-value=41 Score=31.16 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCHHHHHHhcCC------CHHHHHHHHHHHHcccCcccceeec
Q psy11818 138 LTYEEIQSETDI------PERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 138 lt~~eL~~~tgi------~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+|++||++.+|+ +...+.+.|..|+..+ +|.+.
T Consensus 63 ~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g----ll~~~ 101 (372)
T 1fp1_D 63 MSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS----VLTST 101 (372)
T ss_dssp BCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT----SEEEE
T ss_pred cCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC----ceEec
Confidence 999999999999 5678999999999988 98764
No 300
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=28.40 E-value=82 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~G----lI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKK----MISIH 226 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCC----CEEEc
Confidence 57899999999999999999999999887 87764
No 301
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=28.39 E-value=65 Score=26.18 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=40.4
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHhc--------CCCHHHHHHHHHHHHcccCcccceee
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSET--------DIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~t--------gi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
+.-...+++||.+..+ ...+..||++.+ +++...|-..|..|...+ ++..
T Consensus 37 ~~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~G----lI~~ 94 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNG----YIKS 94 (145)
T ss_dssp SGGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTT----SEEE
T ss_pred HhcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCC----CEEE
Confidence 3446789999987765 568888888877 699999999999999988 7765
No 302
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=28.19 E-value=77 Score=25.85 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|...+ ++...
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g----~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREG----LIATA 172 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHT----SEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEec
Confidence 37899999999999999999999999887 77653
No 303
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=27.87 E-value=1.2e+02 Score=22.50 Aligned_cols=27 Identities=4% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
..+|+++|++.+|++...|.+.+....
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 679999999999999999998877654
No 304
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=27.82 E-value=72 Score=28.25 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 124 YQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 124 ~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
+...+|-++-+....++++|+..+|++.+++.+.|..+-
T Consensus 23 ~~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 23 LLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 444566667788899999999999999999999999873
No 305
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=27.81 E-value=48 Score=25.79 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 225 RKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 225 R~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
++-.++.+|..++. .+.++--+|.+.+.+ ...+.++...|=..+..|-+.|||++..
T Consensus 6 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~~ 62 (115)
T 4esb_A 6 LKGVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGTL 62 (115)
T ss_dssp TTTTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhCHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEEe
Confidence 34567888888887 578899999999877 4456899999999999999999999853
No 306
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.72 E-value=88 Score=26.01 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|...+ ++...
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g----~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRG----WIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCC----CEEec
Confidence 47999999999999999999999999887 77654
No 307
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=27.53 E-value=61 Score=28.87 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=34.3
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..|.-|.-||.+.- ..+|..||++.+|+++..++.++.....
T Consensus 197 ~Lt~re~~vl~~~~--~G~s~~eIA~~l~is~~TV~~~~~~~~~ 238 (265)
T 3qp6_A 197 PLSQREYDIFHWMS--RGKTNWEIATILNISERTVKFHVANVIR 238 (265)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667777776663 5799999999999999999999988754
No 308
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=27.37 E-value=37 Score=32.16 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 134 NREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 134 ~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+...+.+++++.+|++...+.+.|..|+..| +|.+..
T Consensus 308 ~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~G----iL~~~~ 345 (373)
T 2qc0_A 308 EQPYCRIQNLVESGLAKRQTASVYLKQLCDIG----VLEEVQ 345 (373)
T ss_dssp HCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTT----SCEEC-
T ss_pred hCCcccHHHHHHHhCCCHHHHHHHHHHHHHCC----cEEEec
Confidence 34568999999999999999999999999988 888764
No 309
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=27.34 E-value=39 Score=25.98 Aligned_cols=49 Identities=10% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
.+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||.|..+
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l--------~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERL--------QIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEecCC
Confidence 445556666666677777665543 3578889999999999999998643
No 310
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=27.16 E-value=48 Score=25.46 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=35.8
Q ss_pred EEchHHHHHHHH--hcCCCCCCHHHHHHhcCCCHH---HHHHHHHHHHcc
Q psy11818 120 QVSTYQMCVLLL--FNNREKLTYEEIQSETDIPER---DLIRALQSLAMG 164 (331)
Q Consensus 120 ~vs~~Qa~ILll--FN~~~~lt~~eL~~~tgi~~~---~l~~~L~sL~~~ 164 (331)
+.+.|||+-++. +...+++|+++|.....|+.. .+.++|..++..
T Consensus 10 tlnsy~maeimykil~~k~e~sledilaqfeis~~sayniqr~l~~ice~ 59 (118)
T 2vqc_A 10 TLNSYKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICER 59 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHSEECHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCcccHHHHHHHheeccchHhHHHHHHHHHHhc
Confidence 567899998765 566789999999999999864 478888876643
No 311
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=27.07 E-value=87 Score=31.67 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=44.8
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcC-------CCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETD-------IPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tg-------i~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
+..|..||.+..+...+|..+|+..+| ++....+.+|..++..| +|.++.
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG----~l~rDd 549 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEG----DLLIDK 549 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTT----SEEEEE
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcC----CEEEEC
Confidence 678999998888889999999999999 99999999999999988 777653
No 312
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=27.01 E-value=53 Score=24.12 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
...|.+.+ .+.++..+|.+.+ ..+...+.+.|..|.+.|+|.+..
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~l--------~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQTL--------SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 34566666 5668888765544 457888999999999999999865
No 313
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=26.78 E-value=55 Score=25.31 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=39.6
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhc------C--CCH-HHHHHHHHHHHcccCcccceee
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSET------D--IPE-RDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~t------g--i~~-~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
.-+..+++||.+..+ ...+..||++.+ + ++. ..+-.+|..|...+ ++..
T Consensus 10 ~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~G----lI~~ 67 (118)
T 2esh_A 10 RGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESG----FLST 67 (118)
T ss_dssp HHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTT----SEEE
T ss_pred ccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCC----CeEE
Confidence 346788999987765 568998998888 3 888 99999999999887 7754
No 314
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=26.64 E-value=98 Score=22.95 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=27.6
Q ss_pred CCCCHHHHHHh--------cCCCHHHHHHHHHHHHcccCccccee
Q psy11818 136 EKLTYEEIQSE--------TDIPERDLIRALQSLAMGKASQRILI 172 (331)
Q Consensus 136 ~~lt~~eL~~~--------tgi~~~~l~~~L~sL~~~k~~~~IL~ 172 (331)
.-+|+-||.+- -|||...|.++|..|++.+ +..|+.
T Consensus 26 sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~g-kA~i~~ 69 (79)
T 3htu_A 26 SVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEH-KAEIIT 69 (79)
T ss_dssp SEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTT-SEEEEC
T ss_pred ceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcC-CEEEEe
Confidence 45899999882 2799999999999998775 334443
No 315
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=26.53 E-value=72 Score=27.87 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=35.0
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++..|++...++++|..|...| ++.+.+
T Consensus 23 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g----~i~~~~ 63 (239)
T 3bwg_A 23 LQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKG----AIFQVR 63 (239)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----cEEEeC
Confidence 4556788 999999999999999999999999988 777654
No 316
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=26.46 E-value=41 Score=26.26 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 260 FLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 260 F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..+.+.+-+.|..|.++|||.|..
T Consensus 66 l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 66 MYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCCchhHHHHHHHHHHCCCeeecC
Confidence 3567888999999999999999853
No 317
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.42 E-value=33 Score=27.10 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 232 AVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 232 aIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
.|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 51 ~iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 51 LVMLVLWETDERSVSEIGER--------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 33444444445555544332 3467888999999999999999954
No 318
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=26.41 E-value=43 Score=30.79 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCCCHHHHHHhcCC---CHHHHHHHHHHHHcccCcccceeec
Q psy11818 136 EKLTYEEIQSETDI---PERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 136 ~~lt~~eL~~~tgi---~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|++||++.+|+ +...+.+.|..|+..+ +|.+.
T Consensus 44 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g----ll~~~ 81 (358)
T 1zg3_A 44 KPMTLSELASSLKLHPSKVNILHRFLRLLTHNG----FFAKT 81 (358)
T ss_dssp SCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCC----cEEEe
Confidence 37999999999999 5778999999999888 88764
No 319
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=26.35 E-value=71 Score=27.94 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=32.9
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++.+|++-..++++|..|...| ++...+
T Consensus 27 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G----~i~~~~ 67 (236)
T 3edp_A 27 YKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEG----LVVRKN 67 (236)
T ss_dssp SCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEEEC
Confidence 3345778 999999999999999999999999988 777654
No 320
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=26.26 E-value=39 Score=26.20 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=33.1
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||.|..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l--------~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELI--------KVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCcCcCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeec
Confidence 34455555555666666555443 357888999999999999999953
No 321
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=26.16 E-value=53 Score=23.04 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.2
Q ss_pred CCHHHHHHhcCCCHHHHHHHHH
Q psy11818 138 LTYEEIQSETDIPERDLIRALQ 159 (331)
Q Consensus 138 lt~~eL~~~tgi~~~~l~~~L~ 159 (331)
+|+.||++..|++...+-+.|+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 5889999999999988888775
No 322
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=26.10 E-value=70 Score=24.94 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=48.5
Q ss_pred hhhhhHHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 224 DRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 224 dR~~~IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-++-.++.+|-.++. .+.++--+|.+.+.+ ...+.++...+=..+..|-++|+|++..
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~~ 66 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAEK 66 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 355668889999987 577888899999876 4456899999999999999999999863
No 323
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=26.06 E-value=98 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.| ++...
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g----~I~~~ 210 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKREN----ILDKK 210 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCC----CeEeC
Confidence 57999999999999999999999999887 88764
No 324
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.92 E-value=65 Score=27.14 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHhhhccc-CCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcc
Q psy11818 224 DRKHEIEAAVVRIMKARK-RMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPED 286 (331)
Q Consensus 224 dR~~~IqAaIVRIMK~~K-~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d 286 (331)
.|+..|=.+|...++.++ ..+..+|...+- .+..-+.+.|..|-++|||.|+...
T Consensus 5 ~~q~~il~~I~~~~~~~g~~~s~~eia~~lg--------l~~~tv~~~l~~Le~~G~i~~~~~~ 60 (196)
T 3k2z_A 5 ERQRKVLLFIEEFIEKNGYPPSVREIARRFR--------ITPRGALLHLIALEKKGYIERKNGK 60 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEECC---
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC--------CCcHHHHHHHHHHHHCCCEEecCCC
Confidence 466667777888887765 688887665541 2233589999999999999998654
No 325
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=25.92 E-value=78 Score=26.57 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=39.8
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcC-CCHHHHHHHHHHHHcccCcccceee
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETD-IPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tg-i~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
-..+.-+.||.++- .+..|+.+|++.+| ++...+-.+|..|...| |+..
T Consensus 20 La~P~Rl~il~~L~-~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~ag----lv~~ 69 (182)
T 4g6q_A 20 LHHPLRWRITQLLI-GRSLTTRELAELLPDVATTTLYRQVGILVKAG----VLMV 69 (182)
T ss_dssp TTSHHHHHHHHHTT-TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHT----SEEE
T ss_pred hCCHHHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC----CeEE
Confidence 34556667777765 46799999999996 99999999999999998 8864
No 326
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=25.91 E-value=72 Score=27.37 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=34.7
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|.-.+.+ +..+|++.+|++-..++.+|..|...| ++...+
T Consensus 25 l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eG----lv~~~~ 65 (239)
T 1hw1_A 25 FPPGTILPAERELSELIGVTRTTLREVLQRLARDG----WLTIQH 65 (239)
T ss_dssp SCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----cEEEec
Confidence 3346788 899999999999999999999999988 887654
No 327
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.70 E-value=32 Score=27.44 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
..|..++...+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDY--------LKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 444455555555666555433 3467888999999999999999853
No 328
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=25.52 E-value=44 Score=26.22 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=38.6
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRF--LPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F--~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
++-.|...++..+.++..+|-. .+ ..+.+.|.++|..|.+.|+|++..
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~--------~l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELED--------RDEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHT--------STTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHcCCCCHHHHHH--------HHhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4566778888888888876544 35 678999999999999999999863
No 329
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=25.49 E-value=15 Score=33.40 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred EchHHHHHHHHhcCC---CCCCHHHHHHhc-CCCHHHHHHHHHHHHccc
Q psy11818 121 VSTYQMCVLLLFNNR---EKLTYEEIQSET-DIPERDLIRALQSLAMGK 165 (331)
Q Consensus 121 vs~~Qa~ILllFN~~---~~lt~~eL~~~t-gi~~~~l~~~L~sL~~~k 165 (331)
.+..|-.||-.+.+. +.+++++|++.+ ++++.+++.+|..|+..+
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG 253 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEG 253 (270)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCC
Confidence 455677788777765 789999999999 799999999999999877
No 330
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=25.32 E-value=74 Score=26.56 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|...+ ++...
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g----~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHN----ILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCC----cEEec
Confidence 47999999999999999999999999887 77654
No 331
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=25.24 E-value=78 Score=27.73 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=34.5
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++.+|++...++++|..|...| ++...+
T Consensus 28 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G----~i~~~~ 68 (243)
T 2wv0_A 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEG----LLYRLK 68 (243)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEECT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEEEeC
Confidence 3456778 899999999999999999999999988 777654
No 332
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=25.24 E-value=50 Score=25.33 Aligned_cols=46 Identities=9% Similarity=0.137 Sum_probs=32.8
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
+..|...+.....++..+|... ...+.+.+-+.|..|.++|||+|.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~--------l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKV--------LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHH--------HCCChHHHHHHHHHHHHCCCEEec
Confidence 4445555555566776665532 245788899999999999999985
No 333
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.19 E-value=68 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=30.0
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 138 LTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 138 lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g----~I~~~ 196 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEG----YISRQ 196 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTT----SSEEC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCC----cEEEc
Confidence 7999999999999999999999999887 77654
No 334
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.91 E-value=59 Score=25.16 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.5
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 122 STYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 122 s~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
+.-|-.|+.++- ...+|..||++.+|++...+...+.-.
T Consensus 27 ~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 27 TNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp CHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444554321 235899999999999998877766544
No 335
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=24.84 E-value=1.3e+02 Score=22.02 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 136 EKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
..+++++|++.+|++...|.+.+....
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 379999999999999999998887664
No 336
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.77 E-value=94 Score=26.14 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=29.9
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 138 LTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 138 lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~g----lI~~~ 219 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNG----LIELH 219 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTT----SCEEE
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCC----CEEec
Confidence 7999999999999999999999999887 77654
No 337
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=24.74 E-value=1e+02 Score=28.81 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=43.2
Q ss_pred EchHHHHHHH-----HhcCCCCCCHHHHHHhc--CCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 121 VSTYQMCVLL-----LFNNREKLTYEEIQSET--DIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 121 vs~~Qa~ILl-----lFN~~~~lt~~eL~~~t--gi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+--|-.||. +.+..+.++..+|++.+ |++..++++-|..|-..| +|.+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~G----lL~r~ 71 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLG----YIYQP 71 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTT----SEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCC----CEEEc
Confidence 4567777887 77888999999999999 899999999999999887 77764
No 338
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.67 E-value=34 Score=25.61 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=37.2
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCcccc
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRF 288 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~ 288 (331)
+-..|..+++... ++..+|- ..+..+.+.|.++|..|-+.|+|.+....|-
T Consensus 18 ~~~~IL~lL~~~g-~sa~eLA--------k~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 18 IVCEAIKTIGIEG-ATAAQLT--------RQLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHHHHHSSST-EEHHHHH--------HHSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHHHHHcC-CCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 3345667788655 6655433 2345788999999999999999999877764
No 339
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=24.65 E-value=1e+02 Score=26.58 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++.+.+-+.|..|.+.+ ++...
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~G----lI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQN----LISAH 250 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC----CEEEc
Confidence 47899999999999999999999999887 88764
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.52 E-value=1.1e+02 Score=25.17 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=47.3
Q ss_pred EEEchHHHHHHHHhcC-CCCCCHHHHHHhc-------CCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 119 IQVSTYQMCVLLLFNN-REKLTYEEIQSET-------DIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~-~~~lt~~eL~~~t-------gi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
+.+|.....||..+.+ .+.+|.+||.+.+ +++..++-++|..|...| ++.+...+ .....|.++.
T Consensus 29 ~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G----lv~~i~~~---~~~~~Y~~~~ 101 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE----MVTSISFG---SAGKKYELAN 101 (162)
T ss_dssp CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT----SEEECC--------CCEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC----CEEEEEeC---CCceEEEeCC
Confidence 4678888889876654 5789999998754 588999999999999998 88764211 1224577774
No 341
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.34 E-value=46 Score=26.04 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~--------l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAA--------LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 3344444444455555544433 3457888999999999999999954
No 342
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.30 E-value=56 Score=25.22 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
.+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 34 ~~~~iL~~l~~~~~~~~~~la~~l--------~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 34 AQFDILQKIYFEGPKRPGELSVLL--------GVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecC
Confidence 344555555556677777666543 357888999999999999999963
No 343
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=24.24 E-value=1.1e+02 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHH
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQS 160 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~s 160 (331)
.+.+++++|++.+|++...|.+.+..
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45799999999999999998887765
No 344
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=24.06 E-value=56 Score=31.01 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 134 NREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 134 ~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
.+..+|.+++++.+|++.....+.|..|+..| +|.+.+
T Consensus 308 ~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~G----iL~~~~ 345 (373)
T 3eqx_A 308 EQPYCRIQNLVESGLAKRQTASVYLKQLCDIG----VLEEVQ 345 (373)
T ss_dssp HCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTT----SCEEC-
T ss_pred HCCCccHHHHHHHhCcCHHHHHHHHHHHHHCC----cEEEeC
Confidence 34568999999999999999999999999988 998754
No 345
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=24.01 E-value=55 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHhhh-cccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 230 EAAVVRIMK-ARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 230 qAaIVRIMK-~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
+..|..++- ..+.++..+|...+ ..+.+-+-+.|..|.++|||.|.
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 333444442 34677777666554 34677889999999999999996
No 346
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.95 E-value=23 Score=26.83 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=31.0
Q ss_pred HHHHHhhhc--ccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 231 AAVVRIMKA--RKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 231 AaIVRIMK~--~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
..|.+++.. ...+...+|... ...+...+..+|..|.++|||+|.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~--------~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYK--------SNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEEe
Confidence 344555555 346666655433 345778899999999999999954
No 347
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=23.89 E-value=41 Score=26.75 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+...+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIF--------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 4444555555556666555443 3467888999999999999999953
No 348
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=23.81 E-value=1.3e+02 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=37.8
Q ss_pred HHHHHhcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecCC
Q psy11818 127 CVLLLFNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPK 176 (331)
Q Consensus 127 ~ILllFN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~ 176 (331)
.|.- |...+.+ |..+|++..|++-..++++|..|...+ ++.+ +.
T Consensus 26 ~I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G----~i~~-~g 70 (248)
T 3f8m_A 26 MLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDG----RVER-RG 70 (248)
T ss_dssp HHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEE-ET
T ss_pred HHhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC----CEEe-CC
Confidence 3443 7777888 999999999999999999999999988 8877 53
No 349
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=23.79 E-value=38 Score=27.11 Aligned_cols=48 Identities=13% Similarity=0.346 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-+..|..++...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERS--------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 345566666666777777665443 345666889999999999999854
No 350
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=23.62 E-value=12 Score=30.85 Aligned_cols=49 Identities=6% Similarity=0.154 Sum_probs=41.3
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCccccee
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILI 172 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~ 172 (331)
.+......|+..+...+.++..+|++.+|++...+.++|..|...| ++.
T Consensus 10 ~~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~G----li~ 58 (163)
T 2gqq_A 10 DLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQG----FIQ 58 (163)
T ss_dssp -CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHT----SEE
T ss_pred chhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC----cEE
Confidence 4556666777788888889999999999999999999999998887 665
No 351
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=23.37 E-value=80 Score=26.19 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=30.3
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
.+|-++|++.+|++.+.+-+.|..|.+.+ ++..
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g----~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMG----ILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCC----CEEE
Confidence 58999999999999999999999999887 7765
No 352
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=23.35 E-value=1.2e+02 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 135 REKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 135 ~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.+++++|++.+|++...|.+.+....
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4569999999999999999998877654
No 353
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=23.08 E-value=98 Score=23.46 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=38.8
Q ss_pred EEEchHHHHHHHHhcCCCCCCHHHHHHh----cCCCHHHHHHHHHHHHcccCcccceee
Q psy11818 119 IQVSTYQMCVLLLFNNREKLTYEEIQSE----TDIPERDLIRALQSLAMGKASQRILIR 173 (331)
Q Consensus 119 l~vs~~Qa~ILllFN~~~~lt~~eL~~~----tgi~~~~l~~~L~sL~~~k~~~~IL~~ 173 (331)
+.-...+++||.+.... ..+.-+|.+. ++++...+-.+|..|...+ ++..
T Consensus 5 ~~~g~l~~~IL~~L~~~-~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~G----lI~~ 58 (108)
T 3l7w_A 5 VSALLIEYLILAIVSKH-DSYGYDISQTIKLIASIKESTLYPILKKLEKAG----YLST 58 (108)
T ss_dssp CCHHHHHHHHHHHHHHS-CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT----SEEE
T ss_pred HHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCC----CeEE
Confidence 34467899999888763 4666666665 5899999999999999988 7765
No 354
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=23.03 E-value=39 Score=25.33 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=36.5
Q ss_pred HHHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccc
Q psy11818 229 IEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287 (331)
Q Consensus 229 IqAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~ 287 (331)
.+..|.+.+ ..+.++..+|...+ ..+.+.+.+.|..|.+.|||.+..+.+
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~~l--------~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLATRL--------PVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHS--------SSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 445566666 45678877665533 568888999999999999999865443
No 355
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=22.83 E-value=54 Score=27.72 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCC-CC----CCHH-H-HHHhcCCCHHHHHHHHHHHHcccCcccceeecCCCCCCCCCCeEEEec
Q psy11818 124 YQMCVLLLFNNR-EK----LTYE-E-IQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVND 190 (331)
Q Consensus 124 ~Qa~ILllFN~~-~~----lt~~-e-L~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~~~~~i~~~~~f~lN~ 190 (331)
.+..|+..-+.. +. +|.. + +++..|.+....+..|..+...+ +|.++... ++..|..|.
T Consensus 100 ~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G----~l~~D~~~----~G~~y~~N~ 165 (169)
T 1u5t_B 100 VKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEG----DLLIDKQL----SGIYYYKNS 165 (169)
T ss_dssp HHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT----SEEEEECS----SCEEEEECC
T ss_pred HHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CEEEECCC----CcceEEeee
Confidence 446666555543 56 7999 9 99999999999999999999887 88776321 245677774
No 356
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=22.83 E-value=87 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHhcCCCCCCHHHHHHhcC--CCHHHHHHHHHHHHc
Q psy11818 130 LLFNNREKLTYEEIQSETD--IPERDLIRALQSLAM 163 (331)
Q Consensus 130 llFN~~~~lt~~eL~~~tg--i~~~~l~~~L~sL~~ 163 (331)
++|-..+.+|.++|++.++ ++.+.+...|..|..
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 5566677899999999999 999999999888853
No 357
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.71 E-value=56 Score=25.33 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=33.0
Q ss_pred HHHHHhhhc-ccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 231 AAVVRIMKA-RKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 231 AaIVRIMK~-~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
..|...+.. .+.++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~--------l~i~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAA--------ERMRSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHcCCCCCHHHHHHH--------hCCChhhHHHHHHHHHHCCCEeeCCC
Confidence 344444544 566776655543 34688889999999999999998643
No 358
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.69 E-value=79 Score=25.06 Aligned_cols=53 Identities=6% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcc--cCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 229 IEAAVVRIMKAR--KRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 229 IqAaIVRIMK~~--K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
-.-+|..++... +.++.++|...+.+.. -..+..-|=+.|+.|.+.|+|.+-.
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 334566666653 6899999998887654 3568899999999999999999864
No 359
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.57 E-value=67 Score=24.95 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=27.6
Q ss_pred EchHHHHHHHH-hcCCCCCCHHHHHHhcCCCHHHHHHHHHHHH
Q psy11818 121 VSTYQMCVLLL-FNNREKLTYEEIQSETDIPERDLIRALQSLA 162 (331)
Q Consensus 121 vs~~Qa~ILll-FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~ 162 (331)
.+.-|..|+.+ |- ..+|..||++.+|++...+...+....
T Consensus 23 L~~~~r~vl~l~y~--~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34445555543 22 358999999999999988877665543
No 360
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.39 E-value=54 Score=26.56 Aligned_cols=47 Identities=6% Similarity=0.093 Sum_probs=30.9
Q ss_pred HHHHHHhhhc-ccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKA-RKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~-~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+.. ...++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~--------l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKA--------IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3444444443 444555554433 3457888999999999999999964
No 361
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.11 E-value=70 Score=27.20 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=34.7
Q ss_pred hcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|--.+.++..+|++.+|++-..++.+|..|...| ++...|
T Consensus 30 l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eG----lv~~~~ 69 (218)
T 3sxy_A 30 LKLGEKLNVRELSEKLGISFTPVRDALLQLATEG----LVKVVP 69 (218)
T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHT----SEEEET
T ss_pred CCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEeC
Confidence 3346789999999999999999999999999887 887654
No 362
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=22.02 E-value=94 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=34.6
Q ss_pred hcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|--.+.++..+|++.+|++-..++.+|..|...+ ++...|
T Consensus 46 l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eG----lv~~~~ 85 (239)
T 2hs5_A 46 FRPGARLSEPDICAALDVSRNTVREAFQILIEDR----LVAHEL 85 (239)
T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEET
T ss_pred CCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEeC
Confidence 3346789999999999999999999999999887 887654
No 363
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.92 E-value=76 Score=23.20 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred CcEEEEEchHHHHHHHHhcC-----CCC---CCHHHHHHhcCCCHHHHH
Q psy11818 115 RKHIIQVSTYQMCVLLLFNN-----REK---LTYEEIQSETDIPERDLI 155 (331)
Q Consensus 115 ~~~~l~vs~~Qa~ILllFN~-----~~~---lt~~eL~~~tgi~~~~l~ 155 (331)
+..-...|..|..+|..|.. ... -..++|+..+||++..++
T Consensus 18 rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 34445678999999988987 433 456688999999997654
No 364
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.80 E-value=1.9e+02 Score=23.54 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHH
Q psy11818 262 PSPVIIKKRIESLIEREYLARTPEDRFLQEKDVFERYYKQHLA 304 (331)
Q Consensus 262 ps~~~IKk~IE~LIereyI~Rd~~d~~i~~~~~~~~~~~~~~~ 304 (331)
.+...|...|+.|.+.||| .|...+++|-+..+.
T Consensus 44 ~~~~~i~~vl~~l~~~g~l---------dD~rfA~~~v~~~~~ 77 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYL---------DDSRFVARFIASRSR 77 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSC---------CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCc---------CHHHHHHHHHHHHHh
Confidence 4778899999999888876 367777777666554
No 365
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=21.65 E-value=55 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhC
Q psy11818 259 RFLPSPVIIKKRIESLIEREYLART 283 (331)
Q Consensus 259 ~F~ps~~~IKk~IE~LIereyI~Rd 283 (331)
.+..+.+.+-+.|..|.++|||+|.
T Consensus 61 ~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 61 LTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3567888899999999999999995
No 366
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.63 E-value=73 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=30.5
Q ss_pred EchHHHHHHHHhcCCCCCCHHHHHHhcCC---CHHH-HHHHHHHHH
Q psy11818 121 VSTYQMCVLLLFNNREKLTYEEIQSETDI---PERD-LIRALQSLA 162 (331)
Q Consensus 121 vs~~Qa~ILllFN~~~~lt~~eL~~~tgi---~~~~-l~~~L~sL~ 162 (331)
.|+-|..|-++- .+.+|..||+..+|+ ++++ +..+|.-+.
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIa 53 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVIS 53 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 466777777664 578999999999999 7777 666666554
No 367
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=21.59 E-value=1.2e+02 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=35.2
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..|.-+.-||.++-++ +|.++|++.++++...+..++..+.+
T Consensus 149 ~LT~rE~~vL~~l~~g--~s~~eIa~~l~is~~TV~~hi~~l~~ 190 (225)
T 3c3w_A 149 GLTDQERTLLGLLSEG--LTNKQIADRMFLAEKTVKNYVSRLLA 190 (225)
T ss_dssp TSCHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCC--CCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3577788888777654 89999999999999999999988764
No 368
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=21.54 E-value=97 Score=27.71 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=34.6
Q ss_pred hcCCCCC-CHHHHHHhcCCCHHHHHHHHHHHHcccCcccceeecC
Q psy11818 132 FNNREKL-TYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYP 175 (331)
Q Consensus 132 FN~~~~l-t~~eL~~~tgi~~~~l~~~L~sL~~~k~~~~IL~~~~ 175 (331)
|...+.+ |..+|++..|++-..++++|..|...+ ++.+.+
T Consensus 47 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G----~i~~~~ 87 (272)
T 3eet_A 47 LPPHTRLPSQARIREEYGVSDTVALEARKVLMAEG----LVEGRS 87 (272)
T ss_dssp SCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEECC
T ss_pred CCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEEec
Confidence 3345778 999999999999999999999999988 887654
No 369
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.30 E-value=38 Score=26.62 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 232 AVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 232 aIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
.|...+...+.++..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 41 ~iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAER--------MEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecC
Confidence 33444444444555544333 3467888999999999999999864
No 370
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=20.92 E-value=76 Score=28.99 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCCHHHHHHhcCCC---HHHHHHHHHHHHcccCcccceeec
Q psy11818 136 EKLTYEEIQSETDIP---ERDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 136 ~~lt~~eL~~~tgi~---~~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
+.+|++||++.+|++ ...+.+.|..|+..+ +|.+.
T Consensus 50 ~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g----ll~~~ 87 (352)
T 1fp2_A 50 KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG----FFEII 87 (352)
T ss_dssp SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT----SEEEE
T ss_pred CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC----eEEEe
Confidence 379999999999995 677999999999887 88764
No 371
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.91 E-value=62 Score=24.96 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
+..|...+. .+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~-~~~~~~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 39 DFLVLRATS-DGPKTMAYLANR--------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHHH--------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 444445555 566666655443 3467888999999999999999853
No 372
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.81 E-value=95 Score=22.70 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Q psy11818 231 AAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIERE 278 (331)
Q Consensus 231 AaIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIere 278 (331)
...|...|.+|.+..++|-.+ |..+.+++-.+|+.|.+.|
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~--------F~l~t~~~i~RI~~Le~~g 49 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQ--------MGLRTQDAINRIQDLLTEG 49 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHH--------HCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCeeeHHHHHHH--------hCCChHHHHHHHHHHHHCC
No 373
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=20.75 E-value=1.7e+02 Score=25.29 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=47.2
Q ss_pred hhhcc--cCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHhhhhC-CCC
Q psy11818 236 IMKAR--KRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQEKDVFERYYKQHLAKRLLL-DKS 312 (331)
Q Consensus 236 IMK~~--K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~ 312 (331)
.|++. +..+.++-+.-..+ + ---++..+|..|..|... +.|.+.|..||+-.|..++.+ +|+
T Consensus 51 ~l~a~~~g~ftr~ef~~G~~~-l---~~dsi~~lk~~l~~l~~~-----------l~d~~~Fk~~Y~ftF~~~re~gqk~ 115 (199)
T 3kev_A 51 KLKASSTCEFSEKEFVEGLAN-L---QVDSLEKLKRKLSSLRKE-----------IEDPSKFRAFYQFVFQYSKEPSQRS 115 (199)
T ss_dssp HTTCCSTTCEEHHHHHHHHHH-T---TCCSHHHHHHHHHHHHHH-----------TTSHHHHHHHHHHHHHHHSCTTCSS
T ss_pred HcCCCccCcccHHHHHHHHHH-h---CCCCHHHHHHHHHHHHHH-----------ccCHHHHHHHHHHHHHHHcCcCcCC
Confidence 34443 44555555444332 2 234677788888887554 246789999999999999888 777
Q ss_pred CCchHHHHHH
Q psy11818 313 VSDDSEKNMI 322 (331)
Q Consensus 313 ~~~~~~~~~~ 322 (331)
-+.++-..+-
T Consensus 116 L~~e~Ai~~W 125 (199)
T 3kev_A 116 LPAETAMALW 125 (199)
T ss_dssp BCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7766655543
No 374
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=20.71 E-value=1.2e+02 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCCHHHHHHhcCCCH-HHHHHHHHHHHcccCcccceeec
Q psy11818 137 KLTYEEIQSETDIPE-RDLIRALQSLAMGKASQRILIRY 174 (331)
Q Consensus 137 ~lt~~eL~~~tgi~~-~~l~~~L~sL~~~k~~~~IL~~~ 174 (331)
.+|-++|++.+|++. +.+-+.|..|.+.+ ++...
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~g----lI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEK----VIVYK 203 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTT----SEEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCC----CEEec
Confidence 589999999999999 79999999999887 77653
No 375
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=20.65 E-value=64 Score=25.18 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=34.3
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy11818 232 AVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPE 285 (331)
Q Consensus 232 aIVRIMK~~K~l~~~~Li~~V~~~l~~~F~ps~~~IKk~IE~LIereyI~Rd~~ 285 (331)
+|.++....+.++..+|...+ ..+.+-+.+.|..|.++|||.|..+
T Consensus 12 ~i~~l~~~~~~~~~~ela~~l--------~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEAL--------AVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhhcCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 355566666778877665533 4577889999999999999998754
No 376
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=20.52 E-value=1.5e+02 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=27.4
Q ss_pred HHHHHhcCCCC--CCHHHHHHhcCCCHHHHHHHHHHH
Q psy11818 127 CVLLLFNNREK--LTYEEIQSETDIPERDLIRALQSL 161 (331)
Q Consensus 127 ~ILllFN~~~~--lt~~eL~~~tgi~~~~l~~~L~sL 161 (331)
.|+-..++.+- .++++|+..+|++.+++.++|.-+
T Consensus 36 ~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 36 ELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555666664 678999999999999999888754
No 377
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=20.44 E-value=1.5e+02 Score=24.59 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=35.9
Q ss_pred EEchHHHHHHHHhcCCCCCCHHHHHHhcCCCHHHHHHHHHHHHc
Q psy11818 120 QVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163 (331)
Q Consensus 120 ~vs~~Qa~ILllFN~~~~lt~~eL~~~tgi~~~~l~~~L~sL~~ 163 (331)
..|.-+.-||.++-. .+|.++|++.++++...+..++..+.+
T Consensus 159 ~Lt~rE~~vL~~l~~--g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 159 KLTKREQQIIKLLGS--GASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp TSCHHHHHHHHHHTT--TCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467788888888765 589999999999999999999988764
No 378
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.41 E-value=93 Score=25.66 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHHHHHhhhc-ccCCChHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy11818 230 EAAVVRIMKA-RKRMQHNTLITEVTEQ--LKSRFLPSPVIIKKRIESLIEREYLARTP 284 (331)
Q Consensus 230 qAaIVRIMK~-~K~l~~~~Li~~V~~~--l~~~F~ps~~~IKk~IE~LIereyI~Rd~ 284 (331)
.-+|.+++.. .+.++.++|...+.+. . ...+..-|=+.|+.|.+.|.|.+-.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~---~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPD---LNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3556666655 4789999999999876 4 3568899999999999999999863
Done!