RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11818
(331 letters)
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger,
ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo
sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A
1ldk_A 1ldk_B 3rtr_A
Length = 760
Score = 215 bits (547), Expect = 5e-64
Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 27/226 (11%)
Query: 65 RFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTY 124
FY ++HSGR+LT Q+ +L F ++ +Q ST+
Sbjct: 552 AFYASRHSGRKLTWLYQLSKGELVTNCFK---------------------NRYTLQASTF 590
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKE---IE 181
QM +LL +N + T +++ T I L + LQ L K +L + ++
Sbjct: 591 QMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSK--LLVLEDENANVDEVELK 648
Query: 182 PNHVFFVNDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARK 241
P+ + + + +K RV I V K E + E+ T ++EDRK I+AA+VRIMK RK
Sbjct: 649 PDTLIKLYLGYKNKKLRVNI-NVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRK 707
Query: 242 RMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287
++H L+ EV QL SRF P +IKK I+ LIE+EYL R ++
Sbjct: 708 VLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEK 753
Score = 56.3 bits (135), Expect = 6e-09
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKVR 328
+++++KDVF+++Y + LAKRL+ S SDD+E +MISKLK
Sbjct: 438 KYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQA 479
Score = 37.5 bits (86), Expect = 0.006
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 5 ENNVNFGLVLRLENDLF-KFYLAKHSGRQLTLQPQMGSADLNAVFFGPRRE 54
L F FY ++HSGR+LT Q+ +L F R
Sbjct: 534 SCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT 584
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
propeller cluster, helical repeats, cullin repeats,
protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Length = 759
Score = 205 bits (522), Expect = 2e-60
Identities = 92/223 (41%), Positives = 127/223 (56%), Gaps = 26/223 (11%)
Query: 65 RFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTY 124
FYL KHSGR+L Q +G A L A F K QVS +
Sbjct: 556 AFYLGKHSGRKLQWQTTLGHAVLKAEFKE---------------------GKKEFQVSLF 594
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNH 184
Q VLL+FN + ++EEI+ T I + +L R LQSLA GKA R+LI+ PK KE+E
Sbjct: 595 QTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKA--RVLIKSPKGKEVEDGD 652
Query: 185 VFFVNDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQ 244
F N F KL R+KI + K E+ E+ T +V +DR+++I+AA+VRIMK RK +
Sbjct: 653 KFIFNGEFKHKLFRIKINQIQMK-ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLG 711
Query: 245 HNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287
HN L++E+ QL +F P +KKRIESLI+R+Y+ R ++
Sbjct: 712 HNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDNP 752
Score = 59.8 bits (144), Expect = 4e-10
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKVR 328
RF+ KDVFE +YK+ LAKRLL+ KS S D+EK+M+SKLK
Sbjct: 441 RFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 482
Score = 41.0 bits (95), Expect = 5e-04
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 22 KFYLAKHSGRQLTLQPQMGSADLNAVFFGPRRE 54
FYL KHSGR+L Q +G A L A F ++E
Sbjct: 556 AFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKE 588
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction,
receptor, UBL conjugation, UBL conjugation pathway,
acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Length = 382
Score = 188 bits (479), Expect = 4e-57
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 65 RFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTY 124
FY HSGR+L M + + ++ ++V+T+
Sbjct: 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEV---------------------GQYDLEVTTF 200
Query: 125 QMCVLLLFNNR--EKLTYEEIQSETDIPERDLIRALQSLAMGK-ASQRILIRYPKT---K 178
Q+ VL +N R EK+++E ++ T++P+ +L R L SL +++L+ P+ K
Sbjct: 201 QLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPK 260
Query: 179 EIEPNHVFFVNDSFTS-----KLHRVKIQTVAA-KGESEPERRETRSKVDEDRKHEIEAA 232
+ +F VN F+ R KI + + +E R E + + R + A
Sbjct: 261 DFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEA 320
Query: 233 VVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287
+++IMK RK++ + L TE+ E LK+ FLP +IK++IE LIE +Y+ R D
Sbjct: 321 IIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDI 375
Score = 57.5 bits (138), Expect = 2e-09
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLK 326
+++Q KDVF RY+K HL +RL+LD S + E+NM+ L+
Sbjct: 44 KYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83
Score = 37.1 bits (85), Expect = 0.007
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 22 KFYLAKHSGRQLTLQPQMGSADLNAVFFGPRRE 54
+FY HSGR+L M + + + +
Sbjct: 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYD 194
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: a.4.5.34
Length = 92
Score = 113 bits (285), Expect = 7e-32
Identities = 67/83 (80%), Positives = 78/83 (93%)
Query: 205 AAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSP 264
A +GES+PER+ETR KVD+DRKHEIEAA+VRIMK+RK+MQHN L+ EVT+QLK+RFLPSP
Sbjct: 3 AKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSP 62
Query: 265 VIIKKRIESLIEREYLARTPEDR 287
V+IKKRIE LIEREYLARTPEDR
Sbjct: 63 VVIKKRIEGLIEREYLARTPEDR 85
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo
sapiens} PDB: 3tdz_C
Length = 77
Score = 104 bits (260), Expect = 2e-28
Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 219 SKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIERE 278
S ++EDRK I+AA+VRIMK RK ++H L+ EV QL SRF P +IKK I+ LIE+E
Sbjct: 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKE 61
Query: 279 YLARTPEDR 287
YL R ++
Sbjct: 62 YLERVDGEK 70
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A
{Saccharomyces cerevisiae} PDB: 3o6b_B
Length = 88
Score = 103 bits (257), Expect = 7e-28
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 206 AKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPV 265
+ E +++ +R+ +EA +VRIMKA++ + H TL+ E Q RF
Sbjct: 1 GSNKRLTEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVS 60
Query: 266 IIKKRIESLIEREYLARTPE 285
++K+ I+SLI++ YL R +
Sbjct: 61 MVKRAIDSLIQKGYLQRGDD 80
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 101
Score = 101 bits (252), Expect = 6e-27
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 207 KGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVI 266
E+ E+ T +V +DR+++I+AA+VRIMK RK + HN L++EV QL +F P
Sbjct: 10 MKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKPAD 67
Query: 267 IKKRIESLIEREYLARTPEDR 287
+KKRIESLI+R+Y+ R E+
Sbjct: 68 LKKRIESLIDRDYMERDKENP 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 3e-08
Identities = 57/363 (15%), Positives = 103/363 (28%), Gaps = 129/363 (35%)
Query: 1 EILAENNVNFGLVLRLEND----------LFK-FYLAKH-SGRQLTLQP--------QMG 40
L N+++ L +L + L K + A+ + R + G
Sbjct: 94 CYLEGNDIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 41 SADLNAVF--FGPRR---EE-VHIFSIYP--LRFYLAKHSGRQLTLQPQMGSADLNAVFF 92
+A L A+F G EE ++ Y + + + L + D VF
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT--TLDAEKVF- 209
Query: 93 GPRREEGEGKDGAS----SSTSPPAPRKHIIQVS-----TYQMCVLLLFNNREKLTYEEI 143
+G + S +P I +S Q+ ++ T E+
Sbjct: 210 ------TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 144 QSET--------DIP--------------ERDLIRALQSLA-MGKASQRILIRYPKTKEI 180
+S + + +A+ L +G YP T +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNT-SL 319
Query: 181 EPNHVFFVNDSFTSKLHRVKIQTVAAKGESEP---------ERRETRSKVDEDRKH---- 227
P+ + DS E P + + + V++ H
Sbjct: 320 PPS---ILEDS-------------LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 228 -EIEAA--------VV--------------RIMKARKRM-QHNTLITEVTEQLKSRFLP- 262
++E + VV R KA + Q +E + +RFLP
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 263 -SP 264
SP
Sbjct: 424 ASP 426
Score = 39.3 bits (91), Expect = 0.002
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 80/182 (43%)
Query: 156 RALQSLAMGKASQRILIRYPKTKEIEPNHVFFV----NDSFTSKLHRVKIQTVAAKGESE 211
R L +L+ G +L+ P FF+ + F L T + E
Sbjct: 7 RPL-TLSHGSLEHVLLV---------PTASFFIASQLQEQFNKILPEP---TEGFAADDE 53
Query: 212 PERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRI 271
P + + L +FL +
Sbjct: 54 PT-----TPAE---------------------------------LVGKFL-------GYV 68
Query: 272 ESLIEREYLARTP----------EDRFLQEKDVFERYYKQH-LAKRLLLDKSVSDDSEKN 320
SL+E + + E+ +L+ D+ H LA +LL + + K
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------HALAAKLLQENDTTLVKTKE 121
Query: 321 MI 322
+I
Sbjct: 122 LI 123
Score = 37.0 bits (85), Expect = 0.009
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 54/182 (29%)
Query: 138 LTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSFTSKLH 197
L++ ++ +P A Q + + F L
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQ----------------------------LQEQFNKILP 42
Query: 198 RVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAA----VVRIMKARKRMQHNTLITEVT 253
T + EP + E+ V +++ K Q + ++
Sbjct: 43 EP---TEGFAADDEPT-----TPA------ELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 254 EQLKSRFLPSPVIIKKRIESLIEREYLARTPEDRFLQEKDVFERYYK-QHLAKRLLLDKS 312
+ ++ +L I +L + L + + ++ K++ + Y + +AKR KS
Sbjct: 89 TEFENCYLEG-----NDIHALAAK--LLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 313 VS 314
S
Sbjct: 142 NS 143
Score = 30.0 bits (67), Expect = 1.5
Identities = 57/310 (18%), Positives = 93/310 (30%), Gaps = 122/310 (39%)
Query: 30 GRQLTLQPQMG------SADLNAVFFGPRREEVHI-----FSI------YP--LRFYLAK 70
G Q + MG S V+ R + H FSI P L +
Sbjct: 1625 GSQ---EQGMGMDLYKTSKAAQDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 71 HSGRQLTLQ-PQM-------GSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVS 122
G+++ M G +F + + S+S + + + +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIF--------KEINEHSTSYTFRSEKGLLSA-- 1728
Query: 123 TY--QMCVLLLFNNREKLTYEEIQSETDIPERDLI--------RALQSLA--M------- 163
T Q + L+ EK +E+++S+ IP AL SLA M
Sbjct: 1729 TQFTQPALTLM----EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 164 -----GKASQRILIRYPKTKE------IEPNHV--FFVNDSF----------TSKLHRVK 200
G Q + R + I P V F ++ T L V+
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL--VE 1842
Query: 201 I--------QTVAAKGESEPERRETRSKVDEDRKHEIEAA--VVRIMKARK----RMQHN 246
I Q VAA G+ ++ V+ +K +K +Q +
Sbjct: 1843 IVNYNVENQQYVAA-GD----------------LRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 247 TLITEVTEQL 256
+ EV L
Sbjct: 1886 LSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 48/369 (13%), Positives = 112/369 (30%), Gaps = 106/369 (28%)
Query: 35 LQPQMGSADLNAVFFGPRREEVHIFSIYPLRFYLAKHSGRQLTLQPQMGSA-DLNAVFFG 93
+ + +++ + L F+ + +Q + +N F
Sbjct: 42 PKSILSKEEIDHIIMSKDAVS----GTLRL-FWTLLSKQEE-MVQKFVEEVLRINYKFLM 95
Query: 94 PR-REEGEGKDGASSSTSPPAPRKHIIQVSTYQMCVLLLFNNREKLTYEEIQSETDIPER 152
+ E P + Y L+N+ + + P
Sbjct: 96 SPIKTE---------QRQPSMMTR------MYIEQRDRLYNDNQVFAKYNVSRLQ--PYL 138
Query: 153 DLIRALQSLA---------M---GK---ASQRILIRYPKTKEIEPNHVFFVN--DSFTSK 195
L +AL L + GK A + K + +F++N + + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 196 LHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHN--------- 246
+Q + + + R S + R H I+A + R++K++ +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNV 253
Query: 247 --------------TLIT----EVTEQLKSRFLPSPVIIKKRIESLIERE-------YLA 281
L+T +VT+ L + + + + +L E YL
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 282 RTPED-----------------RFLQE-KDVFERYYKQHLAKRL--LLDKSVS--DDSE- 318
P+D +++ ++ +K +L +++ S++ + +E
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 319 KNMISKLKV 327
+ M +L V
Sbjct: 372 RKMFDRLSV 380
Score = 44.8 bits (105), Expect = 3e-05
Identities = 34/329 (10%), Positives = 87/329 (26%), Gaps = 67/329 (20%)
Query: 22 KFYLAKHSGRQLTLQPQMGSADLNAVF---FGPRREEVHIFSIYPLRFYLAKHSGRQLTL 78
K ++A +Q +M +F + + Y + +
Sbjct: 163 KTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 79 QPQMGSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTYQMCVLLLFN--NRE 136
+ + + +++ Y+ C+L+L N N +
Sbjct: 219 HSS-----------NIKLRIHSIQAE----------LRRLLKSKPYENCLLVLLNVQNAK 257
Query: 137 KLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPK--TKEIEPNHVF--FVNDSF 192
+ + + R + L+ + L + T + E + +++
Sbjct: 258 AWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRP 315
Query: 193 TS------KLHRVKIQTVAAKGESEPERRETRSKVDEDRKHE-IEAAVVRIMKARKRMQH 245
+ ++ +A + V+ D+ IE+++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------------ 363
Query: 246 NTLITEVTEQLKSRF--LPSPVIIK-KRIESL------IEREYLARTPEDRFLQEKDVFE 296
N L ++ R P I + + + + L EK E
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 297 RYYKQHLAKRLLLDKSVSDDSEKNMISKL 325
+ L+ V ++E + +
Sbjct: 424 STISIPS---IYLELKVKLENEYALHRSI 449
Score = 34.4 bits (78), Expect = 0.050
Identities = 40/288 (13%), Positives = 92/288 (31%), Gaps = 90/288 (31%)
Query: 120 QVSTYQMCVLLLFNNREKLTYEEI---------QSETDIPERDLIRALQSLAMGKASQRI 170
+S + L ++ LT +E+ D+P L + L++ S R
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 171 -LIRYPKTKEIEPNHVFFVNDSFTSKL----HR------------VKI--QTVA----AK 207
L + K + + + + +S + L +R I ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 208 GESEPERR----ETRSKVDEDRK------HEIEAAVVRIMKARKRMQHNTLIT--EVTEQ 255
+S+ S V++ K I + ++ + H +++ + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKT 458
Query: 256 LKSRFLPSPVIIK----------KRIE-----SLIEREYLARTPEDRFLQEK-------- 292
S L P + + K IE +L +L + RFL++K
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAW 514
Query: 293 -------DVFE--RYYKQHLAKRLLLDKSVSDDSEKNMISKLKVRNLP 331
+ + ++YK ++ +D + +++ + LP
Sbjct: 515 NASGSILNTLQQLKFYKPYICD--------NDPKYERLVNAIL-DFLP 553
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.032
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 209 ESEPER-RETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVII 267
EPE R+ R E+++ ++ + A ++ + + L+
Sbjct: 81 TQEPESIRKWR----EEQRKRLQE-----LDAASKVMEQEWREKAKKDLEEWN------- 124
Query: 268 KKRIESLIEREYLARTPEDRFLQEKD 293
+++ E + + + R + F Q+ D
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPD 150
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 31.8 bits (72), Expect = 0.24
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 131 LFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165
L + R L+ +++ T I + D+I LQSL M K
Sbjct: 202 LRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVK 236
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein,
structural genomics, PSI- 2, protein structure
initiative; 3.00A {Corynebacterium diphtheriae}
Length = 583
Score = 29.9 bits (67), Expect = 1.3
Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 27/169 (15%)
Query: 119 IQVSTYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTK 178
Q VL L R +T + + + AL++ + LI
Sbjct: 426 RQDDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGV 485
Query: 179 EIEPNHVFFVNDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMK 238
+ N + + + E+ A + +
Sbjct: 486 WLLGN-------------------ACREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLS 526
Query: 239 ARKRMQHNTLITEVTEQLKSRFLPSPVIIKKRIESLIEREYLARTPEDR 287
+ + L + S K ++ L++ E + R
Sbjct: 527 EVGDLATS--------DLMAMCGVSRGTAKACVDGLVDEERVVAVGGGR 567
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 29.5 bits (66), Expect = 1.5
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165
+ LL +++++T +EI S T + D++ ++L + +
Sbjct: 196 DTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNILR 236
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1
PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 29.2 bits (64), Expect = 2.1
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 13/101 (12%)
Query: 144 QSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNHVFFVNDSFTSKLHRVKIQT 203
S D G ++ +IR+PK ++
Sbjct: 244 LSPGVTNNTDKDVRPAGFTQGGNTRDAVIRFPKDSGHNA-------------VYVSVSDV 290
Query: 204 VAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQ 244
++ + + E R + + D H +EAA +AR +
Sbjct: 291 LSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELN 331
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 28.8 bits (64), Expect = 2.2
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 123 TYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAM 163
+ L N ++++ +++ T I +D+ L L M
Sbjct: 200 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRM 240
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 28.6 bits (64), Expect = 2.7
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 16/102 (15%)
Query: 154 LIRALQSLAMGKASQRIL------IRYPKTKEIEPNHVFFV------NDSFTSKLHRVKI 201
+ R L+++ GK + R P+T + P V + +++
Sbjct: 99 MHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRL 158
Query: 202 QTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRM 243
V + RR R D R ++E + + K
Sbjct: 159 F-VDTDSDVRLSRRVLR---DVRRGRDLEQILTQYTTFVKPA 196
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U
3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U
3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U
3ora_U ...
Length = 71
Score = 25.9 bits (57), Expect = 4.4
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 189 NDSFTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQ 244
N+ F L R K A +E RRE K +RK +AV R K R
Sbjct: 9 NEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLAREN 64
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix
motif, developmental protein, phosphoprotein; 1.50A
{Arabidopsis thaliana}
Length = 169
Score = 27.2 bits (60), Expect = 5.2
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIR 173
Q+ VL L + + L Y+ + E D+ +R L+ + + ++R
Sbjct: 97 QLTVLTLAESNKVLPYDTLMVELDVSN---VRELEDFLINECMYAGIVR 142
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET:
GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB:
1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Length = 221
Score = 27.2 bits (61), Expect = 6.2
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 206 AKGESEPERRETRSKVDEDRKHEIEAAVVRIMKA 239
A+G P R +E RK I + IM+
Sbjct: 16 ARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQL 49
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 27.4 bits (62), Expect = 7.3
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 5 ENNVNFG------LVLRLENDLFKFYLAKHSGRQLTLQ 36
E NV G +++R++ND + L + G+ + ++
Sbjct: 283 EFNVRLGDPEAQPILMRVKNDFLETLLNFYEGKDVHIK 320
>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA
complex, RNA binding protein/RNA complex; 3.20A {Aquifex
aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A 1zc8_K
Length = 156
Score = 26.7 bits (60), Expect = 7.4
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 195 KLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRM 243
K ++VK+ AKG+ +RR + R E+E R K + +
Sbjct: 114 KNNKVKVLIALAKGKKLYDRRRELKEKAMKR--ELE----REFKGKIHL 156
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 27.3 bits (59), Expect = 9.2
Identities = 17/101 (16%), Positives = 31/101 (30%)
Query: 44 LNAVFFGPRREEVHIFSIYPLRFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREEGEGKD 103
+++VF E +IF + + K + D F G E +G
Sbjct: 189 MDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGAL 248
Query: 104 GASSSTSPPAPRKHIIQVSTYQMCVLLLFNNREKLTYEEIQ 144
+ K++ + + LTYEE +
Sbjct: 249 SSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFK 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.372
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,853,360
Number of extensions: 292417
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 48
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)