RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11818
(331 letters)
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 127 bits (319), Expect = 3e-35
Identities = 57/143 (39%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 65 RFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTY 124
FYL KHSGR+L Q +G A L A F K QVS +
Sbjct: 154 AFYLGKHSGRKLQWQTTLGHAVLKAEFKE---------------------GKKEFQVSLF 192
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTKEIEPNH 184
Q VLL+FN + ++EEI+ T I + +L R LQSLA GKA R+LI+ PK KE+E
Sbjct: 193 QTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKA--RVLIKSPKGKEVEDGD 250
Query: 185 VFFVNDSFTSKLHRVKIQTVAAK 207
F N F KL R+KI + K
Sbjct: 251 KFIFNGEFKHKLFRIKINQIQMK 273
Score = 60.8 bits (147), Expect = 3e-11
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKVR 328
RF+ KDVFE +YK+ LAKRLL+ KS S D+EK+M+SKLK
Sbjct: 39 RFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 80
Score = 36.5 bits (84), Expect = 0.003
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 13 VLRLENDLFKFYLAKHSGRQLTLQPQMGSADLNAVFFGPRRE 54
+++L+ FYL KHSGR+L Q +G A L A F ++E
Sbjct: 145 MIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKE 186
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 92
Score = 118 bits (298), Expect = 3e-34
Identities = 67/83 (80%), Positives = 78/83 (93%)
Query: 205 AAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSP 264
A +GES+PER+ETR KVD+DRKHEIEAA+VRIMK+RK+MQHN L+ EVT+QLK+RFLPSP
Sbjct: 3 AKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSP 62
Query: 265 VIIKKRIESLIEREYLARTPEDR 287
V+IKKRIE LIEREYLARTPEDR
Sbjct: 63 VVIKKRIEGLIEREYLARTPEDR 85
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 112 bits (283), Expect = 5e-32
Identities = 39/81 (48%), Positives = 53/81 (65%)
Query: 207 KGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVI 266
K E + E+ T ++EDRK I+AA+VRIMK RK ++H L+ EV QL SRF P +
Sbjct: 3 KTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPV 62
Query: 267 IKKRIESLIEREYLARTPEDR 287
IKK I+ LIE+EYL R ++
Sbjct: 63 IKKCIDILIEKEYLERVDGEK 83
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 104 bits (262), Expect = 6e-29
Identities = 36/79 (45%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 209 ESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVTEQLKSRFLPSPVIIK 268
E+ E+ T +V +DR+++I+AA+VRIMK RK + HN L++E+ QLK F P +K
Sbjct: 1 ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLK 58
Query: 269 KRIESLIEREYLARTPEDR 287
KRIESLI+R+Y+ R ++
Sbjct: 59 KRIESLIDRDYMERDKDNP 77
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 107 bits (269), Expect = 5e-28
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 65 RFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTY 124
FY ++HSGR+LT Q+ +L F ++ +Q ST+
Sbjct: 158 AFYASRHSGRKLTWLYQLSKGELVTNCF---------------------KNRYTLQASTF 196
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPK---TKEIE 181
QM +LL +N + T +++ T I L + LQ L K +L E++
Sbjct: 197 QMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL--LVLEDENANVDEVELK 254
Query: 182 PNHVFFVNDSFTSKLHRVKI 201
P+ + + + +K RV I
Sbjct: 255 PDTLIKLYLGYKNKKLRVNI 274
Score = 66.1 bits (161), Expect = 4e-13
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 287 RFLQEKDVFERYYKQHLAKRLLLDKSVSDDSEKNMISKLKVR 328
+++++KDVF+++Y + LAKRL+ S SDD+E +MISKLK
Sbjct: 44 KYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQA 85
Score = 36.9 bits (85), Expect = 0.002
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 13 VLRLENDLFKFYLAKHSGRQLTLQPQMGSADLNAVFFGPRREE 55
+ R FY ++HSGR+LT Q+ +L F R
Sbjct: 149 LERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTL 191
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 34.4 bits (79), Expect = 0.012
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGKASQRILIRYPKTK---EIE 181
+ + L + R L+ +++ T I + D+I LQSL M ++Y K + +
Sbjct: 191 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLNM--------VKYWKGQHVICVT 242
Query: 182 PNHVFFVNDSFTSKLHRVKI 201
P V S K + +
Sbjct: 243 PKLVEEHLKSAQYKKPPITV 262
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 33.3 bits (76), Expect = 0.032
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 125 QMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165
+ LL +++++T +EI S T + D++ ++L + +
Sbjct: 194 DTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNILR 234
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 31.7 bits (72), Expect = 0.100
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 123 TYQMCVLLLFNNREKLTYEEIQSETDIPERDLIRALQSLAMGK 165
+ L N ++++ +++ T I +D+ L L M
Sbjct: 190 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRMLD 232
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 27.6 bits (61), Expect = 2.2
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 214 RRETRSKVDEDRKHEIEAAVVRIMKARKRMQHNTLITEVT----EQLKSRFLPSPVIIKK 269
RR+ KVDE + + + + R + + QLK F I +K
Sbjct: 163 RRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQK 222
Query: 270 RIESLIERE 278
I I+ E
Sbjct: 223 DIVDSIKGE 231
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 27.3 bits (60), Expect = 2.8
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 192 FTSKLHRVKIQTVAAKGESEPERRETRSKVDEDRKHEIEAAVVRIMKARKRMQHN 246
+++K + + + S E ++ ++ K + AV I +
Sbjct: 51 YSAKFDKTTVTALKV---SAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLP 102
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 377
Score = 26.9 bits (59), Expect = 3.6
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 91 FFGPRREEGEGKDGASSSTSPPAPRKHIIQVSTYQM-CVLLLFNNREKLTYEEIQSE 146
R G +D S+ + P HI V YQ + + ++ LT ++I +
Sbjct: 147 ILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQ 203
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 26.5 bits (58), Expect = 3.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 206 AKGESEPERRETRSKVDEDRKHEIEAAVVRIMKA 239
A+G P R +E RK I + IM+
Sbjct: 16 ARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQL 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.372
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,307
Number of extensions: 53816
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 25
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)