BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11819
(651 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 186/423 (43%), Gaps = 41/423 (9%)
Query: 191 WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVN 250
+PL A+ G+ + LL GA ++ +PL A+ GHT+ LL A VN
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 251 AHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILL 310
A + L AA G+T +V LL++ A N+ G TPL A R+GHVE V LL
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALL 133
Query: 311 KAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKH 370
+ A+ + PL+ + AK+G + L L E H
Sbjct: 134 EKEASQACMTKKGFTPLH--------------------VAAKYGKVRVAEL--LLERDAH 171
Query: 371 FERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCW 430
G + G TPL A +++IV +LL G + +
Sbjct: 172 PNAAGKN------------------GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY 213
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL +A N EV LL+Y + NA G T L +A ++G+ E+ LLL+ A N+
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
++SG + L + GH + + L+K V VD + T ++ A GN+ ++K LL
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIV 610
D+ TK G +PL +A + + + + +L+ A V G T L IA R ++
Sbjct: 334 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 393
Query: 611 EVF 613
+V
Sbjct: 394 DVL 396
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 189/408 (46%), Gaps = 43/408 (10%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEH 218
T L A+ G L V+ L+ RGA N + +PL AAR G+T+V LL + A +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE-IVALLVK 277
+ +PL A+ GHT+ V LLL+ NA+ N + L AA G+ E ++ALL K
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFS 337
+ ++ + K G TPL A + G V + ++LL+ A+ + AG
Sbjct: 136 EASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHPNAAG----------------- 176
Query: 338 EPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGT 397
+ GL TPL V ++ LLP R G + ++ G
Sbjct: 177 KNGL-TPLHVAVHHNNLDIVKLLLP----------RGGSPHSPAWN------------GY 213
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
TPL A ++ VE+ LL+ G + + + TPL +A E+V LLL + N N
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
+K G T L + ++G+ +A +L+ G ++ R G + L A G+ +V+ LL+
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
DV+ K + ++ A ++G+ I+ LLL + DG TPL
Sbjct: 334 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 187/417 (44%), Gaps = 52/417 (12%)
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGR-GYTEIVALLVKKGAKV 282
+PL AS+ GH V LL + A N N + + + A R G+TE+ L++ AKV
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLA 342
N K TPL A R GH +V +LL+ AN ++A + PL+
Sbjct: 74 NAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH-------------- 118
Query: 343 TPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVW 402
+ A+ G ++ L E++ T G TPL
Sbjct: 119 ------IAAREGHVETVL--------ALLEKEASQACMT------------KKGFTPLHV 152
Query: 403 ACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
A + G V + ++LL+ A+ + AG TPL VA N ++V+LLL + ++ +G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
T L IA K E+A LL G N + G + L A + GH +V LL K + +
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLID 582
+ K T ++ ++G+VP+ +L+ ++ T+ G TPL A N++ ++ L+
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 583 KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKA---GETPYSI 636
+A + A K G + LH A + IV + ++N + PN+ G TP +I
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTTPLAI 383
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 180/429 (41%), Gaps = 62/429 (14%)
Query: 25 GHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHK---SLKERK 81
GH IV+ LL++ ++ K+ L++ + LL +NK K K+ +
Sbjct: 25 GHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQ 81
Query: 82 TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQT 141
T ++ A G+ ++KLLL N + +AT + + L E +++++
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLAT----------TAGHTPLHIAAREGHVETVLA 131
Query: 142 FLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREG 201
LE + + A G T L AA+ GK+ L+ R A NA + +PL A
Sbjct: 132 LLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 202 YTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLI 261
D+ LL G G++PL A+ + + LL NA ++ L
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 262 WAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL 321
AA G+ E+VALL+ K A N+G+K G TPL ++GHV + D+L+K G VD
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309
Query: 322 WAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGK--SFLLPKLKEEMKHFERQGVDPT 379
Y PL+ + + +G+ K FLL + Q
Sbjct: 310 MGYTPLH--------------------VASHYGNIKLVKFLL----------QHQADVNA 339
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
T G +PL A ++GH +IV +LLK GA+ + TPL +A
Sbjct: 340 KT------------KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Query: 440 NFTEVVELL 448
+ V ++L
Sbjct: 388 GYISVTDVL 396
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 141/302 (46%), Gaps = 22/302 (7%)
Query: 13 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKN 72
+G + L A + GH V ALL+K + +K L+V + LL+++
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 73 KHKSL--KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC---YRTL 127
H + K T ++ AV N+ I+KLLL PR S S Y L
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLL-------------PRGGSPHSPAWNGYTPL 216
Query: 128 QSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED 187
++ ++ ++ L+ + A+ G T L AAQ+G V L+++ A+ N +
Sbjct: 217 HIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+PL A+EG+ V L+ HG ++ G++PL AS+ G+ V LL A
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA S L AA +G+T+IV LL+K GA N GTTPL A R G++ + D
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS-DGTTPLAIAKRLGYISVTD 394
Query: 308 IL 309
+L
Sbjct: 395 VL 396
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Query: 464 TALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI 523
T L +A G+ I LL GA N+ + ++ L A + GH + + LL+ V+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 524 PGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK 583
K+ +T ++ A G+ ++KLLL N + +AT G TPL A + ++E + L++K
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 584 KAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGE---TPYSIDMNN 640
+A + K+G T LH+A + + E+ + + PN AG+ TP + +++
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLTPLHVAVHH 189
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA+D D ++PL AAREG+ ++ LL GAD+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G++PL A+ +GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
GA VN DK +G TP A R+GH +I ++L KA
Sbjct: 123 AGADVNAQDK-FGKTPFDLAIREGHEDIAEVLQKA 156
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 78/121 (64%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R+GH+EIV++LLKAGA+V+ +TPL +A E+VE+LL+ +V
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA DKDG T L +A ++G+ EI +LL +GA +N QD+ G + A++ GH I E L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Query: 516 K 516
K
Sbjct: 155 K 155
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D L AAR G D L+ +GAD+ +D G++PL A+ +GH + V +LL AD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
VNA + L AA G+ EIV +L+K GA VN DK G TPL A R+GH+EIV++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 309 LLKAGANVDVAGLWAYMPL 327
LLKAGA+V+ + P
Sbjct: 120 LLKAGADVNAQDKFGKTPF 138
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 87/151 (57%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ +TPL +A E+VE+LL+ +VNA D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
KDG T L +A ++G+ EI +LL +GA +N +D+ G + L A + GH IVE LLK
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
DV+ K KT A+ +G+ I ++L A
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA DKDG T L +A ++G+ EI +LL +GA +N +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+ G + L A + GH IVE LLK DV+ K+ T ++ A +G++ I+++LL A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G TP A++ + + ++L
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
K G TPL A R+GH+EIV++LLKAGA+V+ Y PL+ +A
Sbjct: 66 K-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A + G + +L+ +GA +N +D+ G + L A + GH IVE LLK DV+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
K+ T ++ A +G++ I+++LL A D+ KDG TPL A + +LE +++L+ A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ A DK G T +A+R + I EV
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ K+ T ++ A +G++ I+++LL A D+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
KDG TPL A + +LE +++L+ A + A DK G T LH+A R IVEV ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+TP+ + + +A+
Sbjct: 126 D---VNAQDKFGKTPFDLAIREGHEDIAE 151
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 79/210 (37%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
DV++K D+ G + L A + GH IVE LLK DV
Sbjct: 27 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV------------------------ 61
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
N DK+ + T ++ A +G++ I+++LL A D+
Sbjct: 62 --NAKDKDGY-------TPLHLAAREGHLEIVEVLLKAGADVN----------------- 95
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
A D+D G T L AA++G L V L+ GADVN
Sbjct: 96 -------------------------AKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGA 214
A+D +P A REG+ D+ AE+L A
Sbjct: 129 AQDKFGKTPFDLAIREGHEDI-AEVLQKAA 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G V++L+ GADVNA D+D +PL YAA+EG+ ++ L+ GAD+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G +PL +A+ +GH + V LL+ K ADVNA + + L +AA G+ EIV LL+
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
KGA VN D G TPL A G+ EIV +L K G
Sbjct: 125 KGADVNTSDS-DGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Query: 119 MVSLCYRTLQSYIAED-NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELV 177
M L R +++ AE+ N D ++ +EN V + D +G T L +AA++G V+ L+
Sbjct: 1 MSELGKRLIEA--AENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLI 57
Query: 178 TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
++GADVNA+D+D +PL YAA+EG+ ++ L+ GAD+ +D G +PL +A+ +GH +
Sbjct: 58 SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 117
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
V LL+ K ADVN + + L A G EIV LL K+G
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 84/148 (56%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A G+ + V L++ GA+V+ + TPL A E+V+LL+ +VNA D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
DG T L A K+G+ EI LL++ GA +N +D G + L +A K GH+ IV+ L+ K
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ + +T + A E GN I+KLL
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
L+ A + V+ L+E +VNA D DG T L A K+G+ EI LL++ GA +N +D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L +A K GH+ IV+ L+ K DV+ + +T ++ A ++G+ I+KLL++
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ + DG TPL A + N E +++L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL +A ++GH EIV +L+ GA+V+ TPL A E+V+LL+
Sbjct: 35 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA D DG T L A K+G+ EI LL++ GA +N D G + L A + G+ IV+
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 514 LLKK 517
L K+
Sbjct: 155 LEKQ 158
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 87 AVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENK 146
A E GN +K L+ D+ SDS RT Y A++ + L +K
Sbjct: 11 AAENGNKDRVKDLIENGADVNA-------SDS----DGRTPLHYAAKEGHKEIVKLLISK 59
Query: 147 RTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVC 206
+ +D +G T L +AA++G V+ L+++GADVNA+D+D +PL YAA+EG+ ++
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 207 AELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
L+ GAD+ D G +PL A G+ + V LL
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A ++G + L+ +GA +N D G + L +A K GH+ IV+ L+ K DV+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
+ +T ++ A ++G+ I+KLL++ D+ DG TPL A K + E +++LI K A
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ D G T L +A ++ IV++
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
LI AA G + V L++ GA VN D G TPL +A ++GH EIV +L+ GA+V+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ + AK G KE +K +G D
Sbjct: 67 DSDGRTPLHYA--------------------AKEGH---------KEIVKLLISKGADVN 97
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
S G TPL +A ++GH EIV +L+ GA+V+ + TPL +A
Sbjct: 98 AKDSD-----------GRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 440 NFTEVVELL 448
E+V+LL
Sbjct: 147 GNEEIVKLL 155
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL +A ++GH EIV +L+ GA+V+ TPL A E+V+LL+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYI 488
+VN D DG T L +A + G EI LL G ++
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
LI A + G++ V+ L++ DV+ + +T ++ A ++G+ I+KLL++ D+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
DG TPL A K + E +++LI K A + A D G T LH A + K IV++ I
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 77/207 (37%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
D G + L +A K GH+ IV+ L+ K DV N D++
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADV-------------NAKDSDG---------- 70
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSY 130
+T ++ A ++G+ I+KLL++ D+ SD L Y
Sbjct: 71 ----------RTPLHYAAKEGHKEIVKLLISKGADV-----NAKDSDGRTPLHY------ 109
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
AA++G V+ L+++GADVN D+D
Sbjct: 110 ---------------------------------AAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 191 WSPLTYAAREGYTDVCAELLDHGADLE 217
+PL A G ++ L G LE
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA+D D ++PL AAREG+ ++ LL GAD+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G++PL A+ +GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
GA VN DK +G TP A G+ +I ++L KA
Sbjct: 123 AGADVNAQDK-FGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 77/121 (63%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R+GH+EIV++LLKAGA+V+ +TPL +A E+VE+LL+ +V
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA DKDG T L +A ++G+ EI +LL +GA +N QD+ G + A+ G+ I E L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Query: 516 K 516
K
Sbjct: 155 K 155
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D L AAR G D L+ +GAD+ +D G++PL A+ +GH + V +LL AD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
VNA + L AA G+ EIV +L+K GA VN DK G TPL A R+GH+EIV++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 309 LLKAGANVDVAGLWAYMPL 327
LLKAGA+V+ + P
Sbjct: 120 LLKAGADVNAQDKFGKTPF 138
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 87/151 (57%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ +TPL +A E+VE+LL+ +VNA D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
KDG T L +A ++G+ EI +LL +GA +N +D+ G + L A + GH IVE LLK
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
DV+ K KT A++ GN I ++L A
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + +D +G T L AA++G L V L+ GADVNA+D D ++PL
Sbjct: 16 DEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 74
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AAREG+ ++ LL GAD+ +D G++PL A+ +GH + V +LL ADVNA +
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
+ A G +I +L K
Sbjct: 135 KTPFDLAIDNGNEDIAEVLQK 155
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA DKDG T L +A ++G+ EI +LL +GA +N +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+ G + L A + GH IVE LLK DV+ K+ T ++ A +G++ I+++LL A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G TP A+ N + ++L
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
K G TPL A R+GH+EIV++LLKAGA+V+ Y PL+ +A
Sbjct: 66 K-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A + G + +L+ +GA +N +D+ G + L A + GH IVE LLK DV+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
K+ T ++ A +G++ I+++LL A D+ KDG TPL A + +LE +++L+ A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
+ A DK G T +A+ ++ I EV +
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ K+ T ++ A +G++ I+++LL A D+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
KDG TPL A + +LE +++L+ A + A DK G T LH+A R IVEV ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+TP+ + ++N +A+
Sbjct: 126 D---VNAQDKFGKTPFDLAIDNGNEDIAE 151
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 79/210 (37%), Gaps = 79/210 (37%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
DV++K D+ G + L A + GH IVE LLK DV
Sbjct: 27 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV------------------------ 61
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
N DK+ + T ++ A +G++ I+++LL A D+
Sbjct: 62 --NAKDKDGY-------TPLHLAAREGHLEIVEVLLKAGADVN----------------- 95
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
A D+D G T L AA++G L V L+ GADVN
Sbjct: 96 -------------------------AKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGA 214
A+D +P A G D+ AE+L A
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDI-AEVLQKAA 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G V++L+ GADVNA D+D +PL +AA G+ +V L+ GAD+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G +PL A+ GH + V LL+ K ADVNA + + L AA G+ E+V LL+
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
KGA VN D G TPL A G+ E+V +L K G
Sbjct: 125 KGADVNTSDS-DGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 119 MVSLCYRTLQSYIAED-NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELV 177
M L R +++ AE+ N D ++ +EN V + D +G T L AA+ G V+ L+
Sbjct: 1 MSELGKRLIEA--AENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLI 57
Query: 178 TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
++GADVNA+D+D +PL +AA G+ +V L+ GAD+ +D G +PL A+ GH +
Sbjct: 58 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 117
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
V LL+ K ADVN + + L A G E+V LL K+G
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 84/148 (56%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A G+ + V L++ GA+V+ + TPL A EVV+LL+ +VNA D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
DG T L A ++G+ E+ LL++ GA +N +D G + L HA + GH+ +V+ L+ K
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ + +T + A E GN ++KLL
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
L+ A + V+ L+E +VNA D DG T L A ++G+ E+ LL++ GA +N +D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L HA + GH+ +V+ L+ K DV+ + +T ++ A E G+ ++KLL++
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ + DG TPL A + N E +++L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 68/124 (54%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL A GH E+V +L+ GA+V+ TPL A EVV+LL+
Sbjct: 35 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA D DG T L A ++G+ E+ LL++ GA +N D G + L A + G+ +V+
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 514 LLKK 517
L K+
Sbjct: 155 LEKQ 158
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 79/148 (53%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A ++G + L+ +GA +N D G + L HA + GH+ +V+ L+ K DV+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
+ +T ++ A E G+ ++KLL++ D+ DG TPL A + + E +++LI K A
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ D G T L +A ++ +V++
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 87 AVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENK 146
A E GN +K L+ D+ SDS RT + AE+ + L +K
Sbjct: 11 AAENGNKDRVKDLIENGADVNA-------SDS----DGRTPLHHAAENGHKEVVKLLISK 59
Query: 147 RTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVC 206
+ +D +G T L AA+ G V+ L+++GADVNA+D+D +PL +AA G+ +V
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Query: 207 AELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
L+ GAD+ D G +PL A G+ + V LL
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
LI A + G++ V+ L++ DV+ + +T ++ A E G+ ++KLL++ D+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
DG TPL A + + E +++LI K A + A D G T LH A K +V++ I
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL A GH E+V +L+ GA+V+ TPL A EVV+LL+
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYI 488
+VN D DG T L +A + G E+ LL G ++
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
LI AA G + V L++ GA VN D G TPL A GH E+V +L+ GA+V+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ +A E G KE +K +G D
Sbjct: 67 DSDGRTPLHHAA------ENG-----------------------HKEVVKLLISKGADVN 97
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
S G TPL A GH E+V +L+ GA+V+ + TPL +A
Sbjct: 98 AKDSD-----------GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 440 NFTEVVELL 448
EVV+LL
Sbjct: 147 GNEEVVKLL 155
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDA---LNVTDANDQRSTTRN 67
D G + L HA + GH+ +V+ L+ K DV+ K SD L+ N + +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNA-----KDSDGRTPLHHAAENGHKEVVKL 88
Query: 68 LLDKNKHKSLKER--KTAVYTAVEKGNVPILKLLLTANPDL 106
L+ K + K+ +T ++ A E G+ ++KLL++ D+
Sbjct: 89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDA---LNVTDANDQ 61
DV++K D G + L HA + GH+ +V+ L+ K DV+ K SD L+ N
Sbjct: 62 DVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNA-----KDSDGRTPLHHAAENGH 115
Query: 62 RSTTRNLLDKNK--HKSLKERKTAVYTAVEKGNVPILKLL 99
+ + L+ K + S + +T + A E GN ++KLL
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G V++L+ GAD NA D+D +PL YAA G+ ++ LL GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G +PL +A+ GH + V LLL K AD NA + + L +AA G+ EIV LL+
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
KGA N D G TPL A G+ EIV +L K G
Sbjct: 125 KGADPNTSDS-DGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 119 MVSLCYRTLQSYIAED-NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELV 177
M L R +++ AE+ N D ++ LEN + D +G T L +AA+ G V+ L+
Sbjct: 1 MSELGKRLIEA--AENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLL 57
Query: 178 TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
++GAD NA+D+D +PL YAA G+ ++ LL GAD +D G +PL +A+ GH +
Sbjct: 58 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 117
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
V LLL K AD N + + L A G EIV LL K+G
Sbjct: 118 IVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 80/148 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A G+ + V LL+ GA+ + + TPL A E+V+LLL + NA D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
DG T L A ++G+ EI LLL+ GA N +D G + L +A + GH+ IV+ LL K
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
D + + +T + A E GN I+KLL
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
L+ A + V+ LLE + NA D DG T L A ++G+ EI LLL+ GA N +D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L +A + GH+ IV+ LL K D + + +T ++ A E G+ I+KLLL+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D + DG TPL A + N E +++L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 365 KEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDV 424
K+ +K G DP + S G TPL +A GH EIV +LL GA+ +
Sbjct: 17 KDRVKDLLENGADPNASDSD-----------GRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 425 AGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNS 484
TPL A E+V+LLL + NA D DG T L A ++G+ EI LLL+
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
GA N D G + L A + G+ IV+ L K+
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A ++G + LL +GA N D G + L +A + GH+ IV+ LL K D +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
+ +T ++ A E G+ I+KLLL+ D DG TPL A + + E +++L+ K A
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
D G T L +A ++ IV++ +
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 78/189 (41%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
LI AA G + V L++ GA N D G TPL +A GH EIV +LL GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ +A E G KE +K +G DP
Sbjct: 67 DSDGRTPLHYAA------ENG-----------------------HKEIVKLLLSKGADPN 97
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
S G TPL +A GH EIV +LL GA+ + + TPL +A
Sbjct: 98 AKDSD-----------GRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREH 146
Query: 440 NFTEVVELL 448
E+V+LL
Sbjct: 147 GNEEIVKLL 155
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 48/95 (50%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL +A GH EIV +LL GA+ + TPL A E+V+LLL
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYI 488
+ N D DG T L +A + G EI LL G ++
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D+ +PL AA G+ ++ LL HGAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
RD GW+PL A+ GH + V +LL ADVNA Y ++ L AA RG+ EIV +L+K
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 HGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%)
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
H G+TPL A GH EIV++LLK GA+V+ WTPL +A E+VE+LL+Y
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
+VNA D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ +
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 512 EALLK 516
E L K
Sbjct: 163 EILQK 167
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL A++ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA G+ EIV +L+K GA VN D YG TPL A +GH+EIV++LLK G
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD-AYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A E+VE+LL++ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
DG T L +A +G+ EI +LL GA +N QD G + L A GH IVE LLK
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + DD G T L AA G V L+ GADVNA D D W+PL
Sbjct: 28 DEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL +GAD+ +D G +PL A+ +GH + V +LL ADVNA +
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNAH + + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G TPL A GH+EIV++LLK GA+V+ + PL+ +A
Sbjct: 78 -TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL GA +N +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ T ++ A ++G++ I+++LL
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 74/147 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D G + L A GH IVE LLK DV+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A + G++ I+++LL D+ G TPL A +LE +++L+ A +
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFIR 615
A DK G T I++ ++ + E+ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ + T ++ A G+ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
DG TPL A +LE +++L+ A + A D G T LH+A IVEV +++
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A + E +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
A + A D G T LH+A IVEV ++
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 1/205 (0%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
+PL A GHV+I +L++AGAN+D TPL+ A N E V+ L++ V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAVKGGHRGIVEALLK 516
D +G T L +A K G+YE+ LL++G +N QD G + +I A + H +V+ LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 517 KYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEA 576
K D++I E ++ A G V I ++LL A DL GD+PL A + +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDC 192
Query: 577 IQMLIDKKAKITAVDKRGDTVLHIA 601
+ + + + + +T +K G+T L A
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 2/175 (1%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGA-DLE 217
T LM AA+ L V+ L+ GA V+ +D + + L AA++G+ +V LL +G D+
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D GGW+P++WA+ H D V LLL K +D+N N L WAA G +I +L+
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
++ + ++G +PL A R+ + V + L ++V + PL ++L
Sbjct: 166 AKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
N + L AA+ G + LV GA+++ D +PL AA + + L+ GA
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLL-DKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
++ +D G + L A+ KGH + V LL + DVN + + +IWA + ++V L
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
L+ KG+ +N+ D L WA G V+I +ILL A ++ + PL+ +A
Sbjct: 130 LLSKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
E + SPL AA G+ D+C L+ GA+++ +PLM A+ H + V L+
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGA-KVNVGDKVYGTTPLVWACRKGHVE 304
A V+ + L AA +G+ E+V L+ G VN D G TP++WA HV+
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVD 125
Query: 305 IVDILLKAGANVDV 318
+V +LL G+++++
Sbjct: 126 LVKLLLSKGSDINI 139
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 45/247 (18%)
Query: 292 TPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYA 351
+PL A GHV+I +L++AGAN+D PL +A +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL--------------- 57
Query: 352 KWGSGKSFLLPKLKEEMKHFERQG--VDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHV 409
E +K+ + G VDP + G+T L A +KGH
Sbjct: 58 --------------EAVKYLIKAGALVDPKD-------------AEGSTCLHLAAKKGHY 90
Query: 410 EIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTI 468
E+V LL G +V+ WTP++ AT ++V+LLL ++N D + L
Sbjct: 91 EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHW 150
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A G +IA +LL + ++ + GDS L A + V L + DV + KE
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG 210
Query: 529 KTAVYTA 535
+T + A
Sbjct: 211 ETPLQCA 217
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 29/198 (14%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEI-------------------ATKTLPRSDS 118
+ +++ ++ A E G+V I +L+ A +++ A K L ++ +
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 119 MV-------SLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLS 171
+V S C L + + + +Q L N + + +DD G T +++A + +
Sbjct: 69 LVDPKDAEGSTC---LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 172 FVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWAS 231
V+ L+++G+D+N DN+ L +AA G D+ LL DL ++ G SPL A+
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 232 YKGHTDTVALLLDKNADV 249
+ D V L L +++DV
Sbjct: 186 RENRYDCVVLFLSRDSDV 203
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 59/104 (56%)
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAI 577
+++ + + +++ ++ A E G+V I +L+ A +++ ++D TPL++A + +LEA+
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 578 QMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNI 621
+ LI A + D G T LH+A + +V+ + N + ++
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA+D D ++PL AAREG+ ++ LL GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G++PL A+ +GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA VN DK +G T + G+ ++ +IL
Sbjct: 135 AGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 165
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ +D G++PL A+ +GH + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA + L AA G+ EIV +L+K GA VN DK G TPL A R+GH+EIV+
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVE 130
Query: 308 ILLKAGANVD 317
+LLKAGA+V+
Sbjct: 131 VLLKAGADVN 140
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 76/119 (63%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R+GH+EIV++LLKAGA+V+ +TPL +A E+VE+LL+ +V
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
NA DKDG T L +A ++G+ EI +LL +GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 87/148 (58%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ +TPL +A E+VE+LL+ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
KDG T L +A ++G+ EI +LL +GA +N +D+ G + L A + GH IVE LLK
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ K KTA +++ GN + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + +D +G T L AA++G L V L+ GADVNA+D D ++PL
Sbjct: 28 DEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AAREG+ ++ LL GAD+ +D G++PL A+ +GH + V +LL ADVNA +
Sbjct: 87 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALL 275
++ + G ++ +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
K G TPL A R+GH+EIV++LLKAGA+V+ Y PL+ +A
Sbjct: 78 K-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA DKDG T L +A ++G+ EI +LL +GA +N +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+ G + L A + GH IVE LLK DV+ K+ T ++ A +G++ I+++LL A
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A + G + +L+ +GA +N +D+ G + L A + GH IVE LLK DV+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
K+ T ++ A +G++ I+++LL A D+ KDG TPL A + +LE +++L+ A
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ A DK G T I++ ++ + E+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN DK G TPL A R+GH+EIV++LLKAGA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
Y PL+ L A+ G E ++ + G D
Sbjct: 77 DKDGYTPLH--------------------LAAREGH---------LEIVEVLLKAGADVN 107
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
G TPL A R+GH+EIV++LLKAGA+V+ + T ++
Sbjct: 108 AKDKD-----------GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 156
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 157 GNEDLAEIL 165
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ K+ T ++ A +G++ I+++LL A D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
KDG TPL A + +LE +++L+ A + A DK G T LH+A R IVEV ++
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ KDG TPL A + +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
A + A DK G T LH+A R IVEV ++ + + +K G TP +
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHL 119
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 77/206 (37%), Gaps = 79/206 (38%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
DV++K D+ G + L A + GH IVE LLK DV
Sbjct: 39 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV------------------------ 73
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
N DK+ + T ++ A +G++ I+++LL A D+
Sbjct: 74 --NAKDKDGY-------TPLHLAAREGHLEIVEVLLKAGADVN----------------- 107
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
A D+D G T L AA++G L V L+ GADVN
Sbjct: 108 -------------------------AKDKD--GYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELL 210
A+D + + G D+ AE+L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDL-AEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D W+PL AA G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G +PL A+ +GH + V +LL ADVNA ++ + L AA RG+ EIV +L+K
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 NGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ RD GW+PL A++ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ ++ L AA RG+ EIV +L+K GA VN D +G TPL A ++GH+EIV++LLK G
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ WTPL +A E+VE+LL+ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A + G+ EI +LL +GA +N D G + L A K GH IVE LLK
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A GH+EIV++LLK GA+V+ TPL +A E+VE+LL+ +V
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA D G T L +A K G+ EI +LL +GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 516 K 516
K
Sbjct: 167 K 167
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + RD G T L AA G L V L+ GADVNA+D+ +PL
Sbjct: 28 DEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AAR G+ ++ LL +GAD+ D G++PL A+ +GH + V +LL ADVNA +
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+ G TPL A R+GH+EIV++LLK GA+V+ + + PL+ +A
Sbjct: 78 SL-GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL A R+GH+EIV++LLK GA+V+ + + +TPL +A E+VE+LL+
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLL 481
+VNA DK G TA I+ +G ++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D +G + L A GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A +G++ I+++LL D+ + G TPL A K +LE +++L+ A +
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 75/148 (50%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL +GA +N +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A + GH IVE LLK DV+ T ++ A ++G++ I+++LL
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A + +LE +++L+ A + A D G T LH+A + IVEV ++N
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L+N V + +D G T L AA++G L V L+ GADVNA D+ ++PL
Sbjct: 59 HLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL 117
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA+ G+ ++ LL +GAD+ +D G + + G+ D +L
Sbjct: 118 HLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A D G T LH+A R IVEV ++N
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA DN +PL AA G+ ++ LL HGAD++
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D+ G++PL A+Y GH + V +LL ADVNA + ++ L AA GY EIV +L+K
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 HGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 76/121 (62%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GTTPL A GH+EIV++LLK GA+VD + ++ +TPL +A E+VE+LL+ +V
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA+D DG T L +A K GY EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 516 K 516
K
Sbjct: 167 K 167
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL A+Y GH + V +LL ADV+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ + L AA G+ EIV +L+K GA VN D G TPL A + G++EIV++LLK G
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ A TPL +A E+VE+LL++ +V+A D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A G+ EI +LL +GA +N D G + L A K G+ IVE LLK
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D GTTPL A GH+EIV++LLK GA+VD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
++ Y PL+ L A WG E ++ + G D
Sbjct: 77 DVFGYTPLH--------------------LAAYWGH---------LEIVEVLLKNGADVN 107
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
S G TPL A + G++EIV++LLK GA+V+ + T ++
Sbjct: 108 AMDSD-----------GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 157 GNEDLAEIL 165
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA N + L AA G+ EIV +L+K GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
V+G TPL A GH+EIV++LLK GA+V+ PL+ +A
Sbjct: 78 -VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D +G + L A GH IVE LLK DVD
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ DG TPL A K LE +++L+ A +
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D+ G T L AA G L V L+ GADV+A D ++PL
Sbjct: 28 DEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL +GAD+ D G +PL A+ G+ + V +LL ADVNA +
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G TPL A GH+EIV++LLK GA+V+ TPL +A + E+VE+LL++ +
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLL 481
VNA DK G TA I+ +G ++A +L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL GA ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ + T ++ A + G + I+++LL
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + A+D G T LH+A + IVEV +++
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L++ V D D G T L AA G L V L+ GADVNA D+D +PL
Sbjct: 59 HLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL 117
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA+ GY ++ LL HGAD+ +D G + + G+ D +L
Sbjct: 118 HLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ A G TPL A + +LE +++L+
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A D G T LH+A IVEV ++N
Sbjct: 71 ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA DND ++PL AA G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D+ G +PL A+ GH + V +LL ADVNA+ N + L AA G+ EIV +L+K
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA VN DK +G T + G+ ++ +IL
Sbjct: 135 HGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 165
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A GH+EIV++LLK GA+V+ + L TPL +A E+VE+LL++ +V
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
NA D DG T L +A K G+ EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G++PL A+ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
I+ L AA G+ EIV +L+K GA VN D G TPL A + GH+EIV++LLK G
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 80/148 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ +TPL +A E+VE+LL+ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A G+ EI +LL GA +N D G + L A K GH IVE LLK
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ K KTA +++ GN + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D++G T L AA G L V L+ GADVNA D +PL
Sbjct: 28 DEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL HGAD+ D G +PL A+ GH + V +LL ADVNA +
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALL 275
++ + G ++ +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA N + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+ G TPL A GH+EIV++LLK GA+V+ + PL+ +A
Sbjct: 78 -LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D DG T L +A +G+ EI +LL +GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+G + L A GH IVE LLK DV+ + T ++ A + G++ I+++LL
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D G + L A GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ DG TPL A K +LE +++L+ A +
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ + T ++ A G++ I+++LL D+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A T +LE +++L+ A + A D G T LH+A + IVEV +++
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D G TPL A GH+EIV++LLK GA+V+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
L PL+ +A +G ++ L +KH G D
Sbjct: 77 DLTGITPLHLAA----------------------ATGHLEIVEVL---LKH----GADVN 107
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
+ G TPL A + GH+EIV++LLK GA+V+ + T ++
Sbjct: 108 AYDND-----------GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 157 GNEDLAEIL 165
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ DG TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A D G T LH+A IVEV +++
Sbjct: 71 ADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G V++L+ GADVNA D+D +PL AA G+ +V LL GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D G +PL A+ GH + V LLL + AD NA + + L AA G+ E+V LL+
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
+GA N D G TPL A G+ E+V +L K G
Sbjct: 125 QGADPNTSDS-DGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 119 MVSLCYRTLQSYIAED-NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELV 177
M L R +++ AE+ N D ++ LEN V + D +G T L AA+ G V+ L+
Sbjct: 1 MSELGKRLIEA--AENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLL 57
Query: 178 TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
++GAD NA+D+D +PL AA G+ +V LL GAD +D G +PL A+ GH +
Sbjct: 58 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE 117
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
V LLL + AD N + + L A G E+V LL K+G
Sbjct: 118 VVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 82/148 (55%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A G+ + V LL+ GA+V+ + TPL +A EVV+LLL + NA D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
DG T L +A ++G+ E+ LLL+ GA N +D G + L A + GH+ +V+ LL +
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
D + + +T + A E GN ++KLL
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
L+ A + V+ LLE +VNA D DG T L +A ++G+ E+ LLL+ GA N +D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A + GH+ +V+ LL + D + + KT ++ A E G+ ++KLLL+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D + DG TPL A + N E +++L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 67/124 (54%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL A GH E+V +LL GA+ + TPL +A EVV+LLL
Sbjct: 35 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+ NA D DG T L +A ++G+ E+ LLL+ GA N D G + L A + G+ +V+
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 514 LLKK 517
L K+
Sbjct: 155 LEKQ 158
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%)
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG 525
L A ++G + LL +GA +N D G + L A + GH+ +V+ LL + D +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
+ KT ++ A E G+ ++KLLL+ D DG TPL A + + E +++L+ + A
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
D G T L +A ++ +V++ +
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 77/189 (40%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
LI AA G + V L++ GA VN D G TPL A GH E+V +LL GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ L A+ G KE +K QG DP
Sbjct: 67 DSDGKTPLH--------------------LAAENGH---------KEVVKLLLSQGADPN 97
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
S G TPL A GH E+V +LL GA+ + + TPL +A
Sbjct: 98 AKDSD-----------GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREH 146
Query: 440 NFTEVVELL 448
EVV+LL
Sbjct: 147 GNEEVVKLL 155
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 79/195 (40%), Gaps = 40/195 (20%)
Query: 294 LVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKW 353
L+ A G+ + V LL+ GA+V+ + PL+ L A+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLH--------------------LAAEN 47
Query: 354 GSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVD 413
G KE +K QG DP S G TPL A GH E+V
Sbjct: 48 GH---------KEVVKLLLSQGADPNAKDSD-----------GKTPLHLAAENGHKEVVK 87
Query: 414 ILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473
+LL GA+ + TPL +A EVV+LLL + N D DG T L +A + G
Sbjct: 88 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Query: 474 YYEIAVLLLNSGAYI 488
E+ LL G ++
Sbjct: 148 NEEVVKLLEKQGGWL 162
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNAED+ +PL AA +G+ ++ LL HGAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ GH + V +LL ADVNA Y + L AA G+ EIV +L+K
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 YGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ D G +PL A+ KGH + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA + L AA G+ EIV +L+K GA VN D YG TPL A GH+EIV+
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD-TYGFTPLHLAADAGHLEIVE 130
Query: 308 ILLKAGANVD 317
+LLK GA+V+
Sbjct: 131 VLLKYGADVN 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 71/121 (58%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A KGH+EIV++LLK GA+V+ A TPL +A L E+VE+LL+ +V
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 516 K 516
K
Sbjct: 167 K 167
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 83/152 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A + E+VE+LL++ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
K G T L +A G+ EI +LL +GA +N D G + L A GH IVE LLK
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + + L AA +G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
K+ G TPL A GH+EIV++LLK GA+V+ + + PL+ +A
Sbjct: 78 KM-GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + DD+G T L AA KG L V L+ GADVNA D +PL
Sbjct: 28 DEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL +GAD+ D G++PL A+ GH + V +LL ADVNA +
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D G TPL A KGH+EIV++LLK GA+V+ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ +A LY E ++ + G D
Sbjct: 77 DKMGDTPLHLAA-----------------LYGHL------------EIVEVLLKNGADVN 107
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
T +YG TPL A GH+EIV++LLK GA+V+ + T ++
Sbjct: 108 ATD-----------TYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 157 GNEDLAEIL 165
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ KT ++ A KG++ I+++LL D+ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
K GDTPL A +LE +++L+ A + A D G T LH+A A IVEV ++
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D SG + L A GH IVE LLK DV+ K
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ G TPL A +LE +++L+ A +
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFIR 615
A DK G T I++ ++ + E+ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+ GD+ L A GH IVE LLK DV+ T ++ A + G++ I+++LL
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A DK GDT LH+A IVEV ++N
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D W+PL AA G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A++ GH + V +LL ADVNA + I+ L AA RG+ EIV +L+K
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 YGADVNAQDK-FGKTAFDISINNGNEDLAEILQK 167
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D+ GW+PL A+Y GH + V +LL ADVNA+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA G+ EIV +L+K GA VN D G TPL A +GH+EIV++LLK G
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVEVLLKYG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 84/152 (55%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ A + WTPL +A E+VE+LL+ +VNA D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A G+ EI +LL +GA +N +D +G + L A GH IVE LLK
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA ++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 69/121 (57%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A GH+EIV++LLK GA+V+ TPL +A E+VE+LL+ +V
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA D +G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166
Query: 516 K 516
K
Sbjct: 167 K 167
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 64/121 (52%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G T L AA G L V L+ GADVNA D +PL AA G+ ++ LL +GAD+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLV 276
+D G +PL A+ +GH + V +LL ADVNA + ++ + G ++ +L
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166
Query: 277 K 277
K
Sbjct: 167 K 167
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+ G+TPL A GH+EIV++LLK GA+V+ PL+ +A
Sbjct: 78 TL-GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL +GA +N D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ T ++ A +G++ I+++LL
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D G + L A GH IVE LLK DV+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ +G TPL A +LE +++L+ A +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 86/189 (45%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D V G TPL A GH+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAAD-VVGWTPLHLAAYWGHLEIVEVLLKNGADVN-- 74
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
AY L S TPL L A +G E ++ + G D
Sbjct: 75 ---AYDTLGS-------------TPLH--LAAHFGH---------LEIVEVLLKNGADVN 107
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
+ G TPL A +GH+EIV++LLK GA+V+ + T ++
Sbjct: 108 AKDDN-----------GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINN 156
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 157 GNEDLAEIL 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + A D G T LH+A IVEV ++
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I +NN LA+
Sbjct: 138 D---VNAQDKFGKTAFDISINNGNEDLAE 163
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L+N V + D G T L AA G L V L+ GADVNA+D++ +PL
Sbjct: 59 HLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA G+ ++ LL +GAD+ +D G + + G+ D +L
Sbjct: 118 HLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ A G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A D G T LH+A IVEV ++N
Sbjct: 71 ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNAED W+PL AA G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ GH + V +LL ADVNA+ + L AA G+ EIV +L+K
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 NGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D GW+PL A++ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ ++ L AA G+ EIV +L+K GA VN D + G TPL A GH+EIV++LLK G
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ WTPL +A E+VE+LL+ +VNA+D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A G+ EI +LL +GA +N D G + L A GH IVE LLK
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 72/123 (58%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+ G TPL A GH+EIV++LLK GA+V+ TPL +A L E+VE+LL+
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA D +G T L +A G+ EI +LL +GA +N QD+ G + ++ G+ + E
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 514 LLK 516
L K
Sbjct: 165 LQK 167
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D +G T L AA G L V L+ GADVNA D+ +PL
Sbjct: 28 DEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL +GAD+ DM G +PL A+ GH + V +LL ADVNA +
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
G TPL A GH+EIV++LLK GA+V+ + + PL+ +A+
Sbjct: 78 HA-GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A +G+ EI +LL +GA +N D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+G + L A GH IVE LLK DV+ E T ++ A G++ I+++LL
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D SG + L A GH IVE LLK DV+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T + A G++ I+++LL D+ +G TPL A +LE +++L+ A +
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + A D G T LH+A IVEV ++N
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L+N V + D G T L AA G L V L+ GADVNA D + +PL
Sbjct: 59 HLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA G+ ++ LL +GAD+ +D G + + G+ D +L
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
A + AVD G T L +A IVEV ++N + + + G TP +
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHL 119
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ +PL AAR G+ +V LL+ GAD+ +D G +PL A+ GH + V LLL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
VNA + L AA G+ E+V LL++ GA VN DK G TPL A R GH+E+V +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKL 119
Query: 309 LLKAGA 314
LL+AGA
Sbjct: 120 LLEAGA 125
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 78/121 (64%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA DK+G T L +A ++G+ E+ LLL +GA +N +D++G + L A + GH +V+ LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 516 K 516
+
Sbjct: 122 E 122
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
NG T L AA+ G L V+ L+ GADVNA+D + +PL AAR G+ +V LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ +D G +PL A+ GH + V LLL+ ADVNA + L AA G+ E+V LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 276 VKKGA 280
++ GA
Sbjct: 121 LEAGA 125
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL +A EVV+LLLE +VNA DK+G T L +A ++G+ E+ LLL +GA +N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
+D++G + L A + GH +V+ LL+ DV+ K +T ++ A G++ ++KLLL A
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE +V
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
NA DK+G T L +A ++G+ E+ LLL +GAY
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G +PL A+ GH + V LLL+ ADVNA + L AA G+ E+V LL++ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
N DK G TPL A R GH+E+V +LL+AGA+V+ PL+ +A
Sbjct: 62 NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 76/125 (60%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
+G T L +A ++G+ E+ LLL +GA +N +D++G + L A + GH +V+ LL+ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
V+ K +T ++ A G++ ++KLLL A D+ K+G TPL A + +LE +++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 581 IDKKA 585
++ A
Sbjct: 121 LEAGA 125
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ LE V + +D NG T L AA+ G L V+ L+ GADVNA+D + +PL
Sbjct: 14 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
AAR G+ +V LL+ GAD+ +D G +PL A+ GH + V LLL+ A
Sbjct: 73 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%)
Query: 494 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPD 553
+G + L A + GH +V+ LL+ DV+ K +T ++ A G++ ++KLLL A D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 554 LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ K+G TPL A + +LE +++L++ A + A DK G T LH+A R +V++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 614 I 614
+
Sbjct: 121 L 121
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 44/169 (26%)
Query: 13 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKN 72
+G + L A + GH +V+ LL+ DV N DKN
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV--------------------------NAKDKN 34
Query: 73 KHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA 132
+T ++ A G++ ++KLLL A D+ K + + L R
Sbjct: 35 G-------RTPLHLAARNGHLEVVKLLLEAGADVNAKDKN---GRTPLHLAARN------ 78
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
+L+ ++ LE V + +D NG T L AA+ G L V+ L+ GA
Sbjct: 79 -GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
DV++K D++G + L A + GH +V+ LL+ DV+ K + L++ N
Sbjct: 27 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLEV 83
Query: 65 TRNLLDKNKHKSLKER--KTAVYTAVEKGNVPILKLLLTA 102
+ LL+ + K++ +T ++ A G++ ++KLLL A
Sbjct: 84 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D+ W+PL AA G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ +GH + V +LL ADVNA+ + + L AA G+ EIV +L+K
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 HGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D GW+PL A+Y GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ ++ L AA RG+ E+V +L+K GA VN D G TPL A GH+EIV++LLK G
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ + WTPL +A E+VE+LL+ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A G+ E+ +LL +GA +N D +G + L A GH IVE LLK
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A GH+EIV++LLK GA+V+ TPL +A EVVE+LL+ +V
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA D +G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 516 K 516
K
Sbjct: 167 K 167
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D G T L AA G L V L+ GADVNA+D+ +PL
Sbjct: 28 DEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ +V LL +GAD+ D G++PL A+ GH + V +LL ADVNA +
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+ G TPL A +GH+E+V++LLK GA+V+ + PL+ +A
Sbjct: 78 SL-GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYK 452
S G TPL A +GH+E+V++LLK GA+V+ +TPL L A +G+ E+VE+LL++
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHL-EIVEVLLKHG 136
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLL 481
+VNA DK G TA I+ +G ++A +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D G + L A GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A ++G++ ++++LL D+ +G TPL A +LE +++L+ A +
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL +GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH +VE LLK DV+ T ++ A G++ I+++LL
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L+N V D D G T L AA +G L V L+ GADVNA D++ ++PL
Sbjct: 59 HLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL 117
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA G+ ++ LL HGAD+ +D G + + G+ D +L
Sbjct: 118 HLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + A D G T LH+A IVEV +++
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ + G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A D G T LH+A +VEV ++N
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNAED +PL AAR G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ +GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA VN DK +G T + G+ ++ +IL
Sbjct: 135 YGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+YG TPL A R GH+EIV++LLK GA+V+ TPL +A E+VE+LL+Y
Sbjct: 45 TYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 514 L 514
L
Sbjct: 165 L 165
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 81/148 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ Y TPL +A E+VE+LL+ +VNALD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A K G+ EI +LL GA +N D G + L A GH IVE LLK
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ K KTA +++ GN + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ D G +PL A+ GH + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA + L AA RG+ EIV +L+K GA VN D + G+TPL A GH+EIV+
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLEIVE 130
Query: 308 ILLKAGANVD 317
+LLK GA+V+
Sbjct: 131 VLLKYGADVN 140
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA Y + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G+TPL A ++GH+EIV++LLK GA+V+ PL+ +A
Sbjct: 78 -FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D G T L AA+ G L V L+ GADVNA D +PL
Sbjct: 28 DEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA+ G+ ++ LL +GAD+ D G +PL A+ GH + V +LL ADVNA +
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALL 275
++ + G ++ +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D YG TPL A R GH+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAED-TYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ L AK G L ++ +K+ D T
Sbjct: 77 DFSGSTPLH--------------------LAAKRGH-----LEIVEVLLKYGADVNADDT 111
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
G+TPL A GH+EIV++LLK GA+V+ + T ++
Sbjct: 112 I---------------GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 157 GNEDLAEIL 165
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D GD+ L A + GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A ++G++ I+++LL D+ G TPL A T +LE +++L+ A +
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A + G+ EI +LL +GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
SG + L A K GH IVE LLK DV+ T ++ A + G++ I+++LL
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A K +LE +++L+ A + A D G T LH+A IVEV ++
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ GDTPL A + +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
A + A+D G T LH+A + IVEV ++
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA DN +PL AA G+ ++ LL HGAD++
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D+ G++PL A+ GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEI 305
GA VN DK +G T + G+ ++
Sbjct: 135 YGADVNAQDK-FGKTAFDISIDNGNEDL 161
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A GH+EIV++LLK GA+VD A +Y +TPL +A + E+VE+LL+Y +V
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
NA D G T L +A +G+ EI +LL GA +N QD+ G
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ D G +PL A+ GH + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DV+A Y + L AA G+ EIV +L+K GA VN D + G+TPL A +GH+EIV+
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVE 130
Query: 308 ILLKAGANVD 317
+LLK GA+V+
Sbjct: 131 VLLKYGADVN 140
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A + E+VE+LL++ +V+A D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A G+ EI +LL GA +N D +G + L A GH IVE LLK
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILK 545
DV+ K KTA +++ GN + K
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA N ++ L AA G+ EIV +L+K GA V+ D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
VYG TPL A GH+EIV++LLK GA+V+ + PL+ +A
Sbjct: 78 -VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
D+ G T L AA G L V L+ GADV+A D ++PL AA G+ ++ LL +G
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
AD+ DM G +PL A+ +GH + V +LL ADVNA +
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 41/174 (23%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D G TPL A GH+EIV++LLK GA+VD A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
++ + PL+ +A+ V + K+G+ ++ F+
Sbjct: 77 DVYGFTPLHLAAMTGHLE--------IVEVLLKYGA-----------DVNAFDMT----- 112
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL 433
G+TPL A +GH+EIV++LLK GA+V+ + T
Sbjct: 113 ----------------GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
YG TPL A GH+EIV++LLK GA+V+ + TPL +A E+VE+LL+Y +
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 455 VNALDKDGCTALTIACKDGYYEIA 478
VNA DK G TA I+ +G ++A
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLA 162
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D++ A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A T +LE +++L+ A + A D G T LH+A IVEV ++
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQEC 649
+ + +K G+T + I ++N LA+ C
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAKSC 165
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA+D G T L +A G+ EI +LL GA ++ D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ T ++ A ++G++ I+++LL
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRN 573
D+ K G T ++ N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGN 158
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 476 EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTA 535
E+ +L+ N GA +N D +G + L A GH IVE LLK DVD T ++ A
Sbjct: 29 EVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Query: 536 VEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGD 595
G++ I+++LL D+ G TPL A +LE +++L+ A + A DK G
Sbjct: 88 AMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 596 TVLHIAM 602
T I++
Sbjct: 148 TAFDISI 154
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L++ V D D G T L AA G L V L+ GADVNA D +PL
Sbjct: 59 HLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPL 117
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
AA EG+ ++ LL +GAD+ +D G + + G+ D
Sbjct: 118 HLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A + +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
A + A D G T LH+A IVEV ++
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D +PL AA G+ ++ LL HGAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D+ G +PL A+ GH + V +LL ADVNA + + L AA G+ EIV +L+K
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 HGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPNVNAL 458
L+ A R G + V IL+ GA+V+ TPL L AT G+ E+VE+LL++ +VNA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHL-EIVEVLLKHGADVNAI 76
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
D G T L +A G+ EI +LL GA +N D GD+ L A GH IVE LLK
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+ G TPL A GH+EIV++LLK GA+V+ + TPL +A L E+VE+LL++
Sbjct: 45 ASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA+D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 514 LLK 516
L K
Sbjct: 165 LQK 167
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL A+ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA G+ EIV +L+K GA VN D +G TPL A GH+EIV++LLK G
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA ++ L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
+ G+TPL A GH+EIV++LLK GA+V+ W PL+ +A+
Sbjct: 78 -IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D +G T L AA G L V L+ GADVNA D +PL
Sbjct: 28 DEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL HGAD+ D G +PL A+ GH + V +LL ADVNA +
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D SG + L A GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ GDTPL A +LE +++L+ A +
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + AVD GDT LH+A IVEV +++
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ T ++ A G++ I+++LL
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A+D G T LH+A IVEV +++
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D +PL AA G+ ++ LL HGAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D+ G +PL A+ GH + V +LL ADVNA + + L AA G+ EIV +L+K
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 HGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPNVNAL 458
L+ A R G + V IL+ GA+V+ TPL L AT G+ E+VE+LL++ +VNA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHL-EIVEVLLKHGADVNAI 76
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
D G T L +A G+ EI +LL GA +N D GD+ L A GH IVE LLK
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+ G TPL A GH+EIV++LLK GA+V+ + TPL +A L E+VE+LL++
Sbjct: 45 ASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA+D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 514 LLK 516
L K
Sbjct: 165 LQK 167
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL A+ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA G+ EIV +L+K GA VN D +G TPL A GH+EIV++LLK G
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA ++ L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
+ G+TPL A GH+EIV++LLK GA+V+ W PL+ +A+
Sbjct: 78 -IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D +G T L AA G L V L+ GADVNA D +PL
Sbjct: 28 DEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA G+ ++ LL HGAD+ D G +PL A+ GH + V +LL ADVNA +
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 ISSLIWAAGRGYTEIVALLVK 277
++ + G ++ +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D SG + L A GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ GDTPL A +LE +++L+ A +
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A G++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + AVD GDT LH+A IVEV +++
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A G+ EI +LL GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ T ++ A G++ I+++LL
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A+D G T LH+A IVEV +++
Sbjct: 71 ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D +PL G+ ++ LL + AD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D GW+PL A+Y+GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 YGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G TPL GH+EI+++LLK A+V+ + WTPL +A E+VE+LL+Y +
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VNA+D G T L +A +DG+ EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 515 LK 516
K
Sbjct: 166 QK 167
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ + TPL + E++E+LL+Y +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
K G T L +A G+ EI +LL GA +N D G + L A + GH IVE LLK
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL GH + + +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA RG+ EIV +L+K GA VN D G TPL A GH+EIV++LLK G
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA+ + I+ L G+ EI+ +L+K A VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
K G TPL A +GH+EIV++LLK GA+V+ Y PL+ +A
Sbjct: 78 KS-GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA 121
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G T L G L + L+ ADVNA D W+PL AA G+ ++ LL +GAD+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLV 276
D G++PL A+ GH + V +LL ADVNA + ++ + G ++ +L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 277 K 277
K
Sbjct: 167 K 167
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 476 EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTA 535
E+ +L+ N GA +N D G + L V GH I+E LLK DV+ K T ++ A
Sbjct: 29 EVRILMAN-GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 536 VEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGD 595
+G++ I+++LL D+ G TPL A + +LE +++L+ A + A DK G
Sbjct: 88 AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 596 TVLHIAMRARSKTIVEVF 613
T I++ ++ + E+
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L + +G+ EI +LL A +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+SG + L A GH IVE LLK DV+ + T ++ A E G++ I+++LL
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ V G++ I+++LL D+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
K G TPL A +LE +++L+ A + A+D +G T LH+A IVEV ++
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
D +G T L AA +G L V L+ GADVNA D ++PL AA +G+ ++ LL +G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AD+ +D G + + G+ D +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL V +LE I++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
A + A DK G T LH+A IVEV ++
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA G+ VR L+ GADVNA D++ +PL AA G ++ LL +GAD+
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+Y GH + V +LL ADVNA+ + L AA G EIV +L+K
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA VN D + G T + +G ++ +IL
Sbjct: 127 HGADVNAQDAL-GLTAFDISINQGQEDLAEIL 157
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + DDNG T L AA G+L V L+ GADVNA D+ +PL
Sbjct: 20 DEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHL 78
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
AA +G+ ++ LL HGAD+ D GW+PL A+ G + V +LL ADVNA
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
Query: 257 ISSLIWAAGRGYTEIVALL 275
+++ + +G ++ +L
Sbjct: 139 LTAFDISINQGQEDLAEIL 157
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AA G D L+ +GAD+ D G +PL A+ G + V +LL ADVNA
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ I+ L AA G+ EIV +L+K GA VN D+ G TPL A G +EIV++LLK G
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQLEIVEVLLKHG 128
Query: 314 ANV---DVAGLWAY 324
A+V D GL A+
Sbjct: 129 ADVNAQDALGLTAF 142
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A G +EIV++LLK GA+V+ + TPL +A E+VE+LL++ +V
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
NA D+ G T L +A G EI +LL GA +N QD G + ++ G + E L
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
+D+G L+ A+ G D V +L+ ADVNA + ++ L AA G EIV +L+K
Sbjct: 4 QDLG--KKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALA 333
GA VN D G TPL A GH+EIV++LLK GA+V+ + PL+ +AL+
Sbjct: 62 GADVNASDSA-GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS 115
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A G + V IL+ GA+V+ TPL +A E+VE+LL+ +VNA D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A DG+ EI +LL GA +N DR+G + L A G IVE LLK
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ TA ++ +G + ++L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S G TPL A GH+EIV++LLK GA+V+ WTPL +A L E+VE+LL++
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLL 481
+VNA D G TA I+ G ++A +L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D +G T L +A +G EI +LL +GA +N D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+G + L A GH IVE LLK DV+ + T ++ A G + I+++LL
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 553 DL 554
D+
Sbjct: 130 DV 131
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Query: 476 EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTA 535
E+ +L+ N GA +N D +G + L A G IVE LLK DV+ T ++ A
Sbjct: 21 EVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLA 79
Query: 536 VEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGD 595
G++ I+++LL D+ + G TPL A + LE +++L+ A + A D G
Sbjct: 80 AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGL 139
Query: 596 TVLHIAMRARSKTIVEVF 613
T I++ + + E+
Sbjct: 140 TAFDISINQGQEDLAEIL 157
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A G V L+ DV+ T ++ A G + I+++LL D+ +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + A D+ G T LH+A + IVEV +++
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + + G T + I +N + LA+
Sbjct: 130 D---VNAQDALGLTAFDISINQGQEDLAE 155
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G++ + A G +++L+ D+ +G TPL A LE +++L+
Sbjct: 3 GQDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
A + A D G T LH+A IVEV +++ + + ++AG TP +
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHL 111
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
T L WAC GH EIV+ LL+ G V+ W+PL +A E+V+ LL +VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
++++GCT L A +EIAV+LL GA + +D + + A G+ +V LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+I E T ++ A ++ V K L+T + I K+ TPL
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Query: 136 LDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLT 195
LD L+ + +++A D + TAL +A G V L+ G VN +D+ WSPL
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 196 YAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
AA G ++ LL GA + + G +PL +A+ K + +LL+ A+ +A +Y
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 256 HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+++ AA +G ++V +L+ A N+ D G TPL AC + VE L+ GA+
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 316 VDVAGLWAYMPL 327
+ + PL
Sbjct: 198 IYIENKEEKTPL 209
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 165 AQKGKLSFVRELVTRGADVNAE-DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
A GKL ++E + + D D+ + L +A G+T++ LL G + +D G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
WSPL A+ G + V LL K A VNA + L +AA + EI +L++ GA +
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 284 VGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
D Y T + A KG++++V ILL A+ ++ PL+
Sbjct: 134 AKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 79/171 (46%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
T L A TE+VE LL+ VN D G + L IA G EI LL GA++N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
+++G + L +A I LL+ + D TA++ A KGN+ ++ +LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
I +G+TPL A +E + L+ + A I +K T L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 14/215 (6%)
Query: 429 CWTPLLVATL---GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG 485
C + +++ L G E+ E +L K D+D TAL AC G+ EI LL G
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D +G S L A G IV+ALL K V+ + T ++ A K I
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 546 LLLT--ANPDLEIATKD--GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
+LL ANPD KD T + +A NL+ + +L+ KA D G+T LH+A
Sbjct: 124 MLLEGGANPD----AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Query: 602 MRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
+ + + +Y NK +TP +
Sbjct: 180 CDEERVEEAKFLVTQGAS---IYIENKEEKTPLQV 211
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 87/219 (39%), Gaps = 49/219 (22%)
Query: 292 TPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYA 351
T L WAC GH EIV+ LL+ G V+ + PL+ +A A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA------------------ 83
Query: 352 KWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSY----GTTPLVWACRKG 407
G D L V H++ G TPL +A K
Sbjct: 84 -----------------------GXDEIV---KALLVKGAHVNAVNQNGCTPLHYAASKN 117
Query: 408 HVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALT 467
EI +LL+ GAN D Y T + A ++V +LL YK + N D +G T L
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 468 IACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506
+AC + E A L+ GA I I+++ + L KGG
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGG 215
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
++L WA G+TEIV L++ G VN D G +PL A G EIV LL GA+V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 318 VAGLWAYMPLYSSA------LADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHF 371
PL+ +A +A + E G A P Y ++ LK M H
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLK--MVHI 157
Query: 372 ERQGVDPTFTFSSLLFVLV---MHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLY 428
LLF + + G TPL AC + VE L+ GA++ +
Sbjct: 158 -------------LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204
Query: 429 CWTPLLVATLG 439
TPL VA G
Sbjct: 205 EKTPLQVAKGG 215
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%)
Query: 130 YIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDND 189
Y A N + L D +D TA+ AA KG L V L+ A N +D +
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWA 230
+PL A E + L+ GA + + +PL A
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Query: 6 VSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTT 65
++++ D+ + L A GH IVE LL+ + V + K L++ +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXDEIV 89
Query: 66 RNLLDKNKHKSLKERK--TAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVS 121
+ LL K H + + T ++ A K I +LL ANPD + D+
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK------DHYDATA- 142
Query: 122 LCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
+ A+ NL + L K + + +D G T L A + ++ + LVT+GA
Sbjct: 143 -----MHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 182 DVNAEDNDNWSPLTYA 197
+ E+ + +PL A
Sbjct: 197 SIYIENKEEKTPLQVA 212
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
T L WAC GH EIV+ LL+ G V+ W+PL +A E+V+ LL +VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
++++GCT L A +EIAV+LL GA + +D + + A G+ +V LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+I E T ++ A ++ V K L+T + I K+ TPL
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Query: 136 LDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLT 195
LD L+ + +++A D + TAL +A G V L+ G VN +D+ WSPL
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 196 YAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
AA G ++ LL GA + + G +PL +A+ K + +LL+ A+ +A +Y
Sbjct: 79 IAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 256 HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+++ AA +G ++V +L+ A N+ D G TPL AC + VE L+ GA+
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 316 VDVAGLWAYMPL 327
+ + PL
Sbjct: 198 IYIENKEEKTPL 209
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 165 AQKGKLSFVRELVTRGADVNAE-DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
A GKL ++E + + D D+ + L +A G+T++ LL G + +D G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
WSPL A+ G + V LL K A VNA + L +AA + EI +L++ GA +
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 284 VGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
D Y T + A KG++++V ILL A+ ++ PL+
Sbjct: 134 AKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 79/171 (46%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
T L A TE+VE LL+ VN D G + L IA G EI LL GA++N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
+++G + L +A I LL+ + D TA++ A KGN+ ++ +LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
I +G+TPL A +E + L+ + A I +K T L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 14/215 (6%)
Query: 429 CWTPLLVATL---GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG 485
C + +++ L G E+ E +L K D+D TAL AC G+ EI LL G
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D +G S L A G IV+ALL K V+ + T ++ A K I
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 546 LLLT--ANPDLEIATKD--GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
+LL ANPD KD T + +A NL+ + +L+ KA D G+T LH+A
Sbjct: 124 MLLEGGANPD----AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Query: 602 MRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
+ + + +Y NK +TP +
Sbjct: 180 CDEERVEEAKFLVTQGAS---IYIENKEEKTPLQV 211
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 88/215 (40%), Gaps = 41/215 (19%)
Query: 292 TPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYA 351
T L WAC GH EIV+ LL+ G V+ + PL+ +A A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA------------------ 83
Query: 352 KWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEI 411
G+ ++ L + H + G TPL +A K EI
Sbjct: 84 ----GRDEIVKALLVKGAHVNAVNQN------------------GCTPLHYAASKNRHEI 121
Query: 412 VDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACK 471
+LL+ GAN D Y T + A ++V +LL YK + N D +G T L +AC
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 472 DGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506
+ E A L+ GA I I+++ + L KGG
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGG 215
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
++L WA G+TEIV L++ G VN D G +PL A G EIV LL GA+V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 318 VAGLWAYMPLYSSA------LADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHF 371
PL+ +A +A + E G A P Y ++ LK M H
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLK--MVHI 157
Query: 372 ERQGVDPTFTFSSLLFVLV---MHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLY 428
LLF + + G TPL AC + VE L+ GA++ +
Sbjct: 158 -------------LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204
Query: 429 CWTPLLVATLG 439
TPL VA G
Sbjct: 205 EKTPLQVAKGG 215
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%)
Query: 130 YIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDND 189
Y A N + L D +D TA+ AA KG L V L+ A N +D +
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWA 230
+PL A E + L+ GA + + +PL A
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 19/196 (9%)
Query: 6 VSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTT 65
++++ D+ + L A GH IVE LL+ + V + K L++ + +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIV 89
Query: 66 RNLLDKNKHKSLKERK--TAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVS 121
+ LL K H + + T ++ A K I +LL ANPD + D+
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK------DHYDATA- 142
Query: 122 LCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
+ A+ NL + L K + + +D G T L A + ++ + LVT+GA
Sbjct: 143 -----MHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 182 DVNAEDNDNWSPLTYA 197
+ E+ + +PL A
Sbjct: 197 SIYIENKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 85/168 (50%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
T L WAC GH EIV+ LL+ G V+ W+PL +A E+V+ LL VNA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
++++GCT L A +EIAV+LL GA + +D + + A G+ ++ LL
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+I E T ++ A ++ V KLL++ + I K+ TPL
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 210
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 1/192 (0%)
Query: 136 LDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLT 195
L+ L+ + +++A D + TAL +A G V L+ G VN +D+ WSPL
Sbjct: 20 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 79
Query: 196 YAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
AA G ++ LL GA + + G +PL +A+ K + +LL+ A+ +A +Y
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 256 HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+++ AA +G +++ +L+ A N+ D G TPL AC + VE +L+ GA+
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQD-TEGNTPLHLACDEERVEEAKLLVSQGAS 198
Query: 316 VDVAGLWAYMPL 327
+ + PL
Sbjct: 199 IYIENKEEKTPL 210
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 96/215 (44%), Gaps = 14/215 (6%)
Query: 429 CWTPLLVATL---GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG 485
C + L+V L G E+ E +L K D+D TAL AC G+ EI LL G
Sbjct: 5 CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 64
Query: 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D +G S L A G IV+ALL K V+ + T ++ A K I
Sbjct: 65 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 124
Query: 546 LLLT--ANPDLEIATKDG--DTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
+LL ANPD KD T + +A NL+ I +L+ KA D G+T LH+A
Sbjct: 125 MLLEGGANPD----AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Query: 602 MRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
++ + + +Y NK +TP +
Sbjct: 181 CDEERVEEAKLLVSQGAS---IYIENKEEKTPLQV 212
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 79/171 (46%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
T L A TE+VE LL+ VN D G + L IA G EI LL GA +N
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
+++G + L +A I LL+ + D TA++ A KGN+ ++ +LL
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
I +G+TPL A +E ++L+ + A I +K T L +A
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 2/187 (1%)
Query: 165 AQKGKLSFVRELVTRGADVNAE-DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
A GKL ++E + + D D+ + L +A G+T++ LL G + +D G
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
WSPL A+ G + V LL K A VNA + L +AA + EI +L++ GA +
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 284 VGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLAT 343
D Y T + A KG+++++ ILL A+ ++ PL+ + + E L
Sbjct: 135 AKDH-YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
Query: 344 PLTVGLY 350
+Y
Sbjct: 194 SQGASIY 200
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 292 TPLVWACRKGHVEIVDILLKAGANV---DVAGLWAYMPLYSSALADIFSEPGLATPLTVG 348
T L WAC GH EIV+ LL+ G V D AG W+ + + +SA D + L
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALL------- 94
Query: 349 LYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGH 408
GK + + + G TPL +A K
Sbjct: 95 -------GKGAQVNAVNQN----------------------------GCTPLHYAASKNR 119
Query: 409 VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTI 468
EI +LL+ GAN D Y T + A +++ +LL YK + N D +G T L +
Sbjct: 120 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506
AC + E A LL++ GA I I+++ + + KGG
Sbjct: 180 ACDEERVEEAKLLVSQGASIYIENKE-EKTPLQVAKGG 216
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 40/101 (39%)
Query: 130 YIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDND 189
Y A N + L D +D TA+ AA KG L + L+ A N +D +
Sbjct: 113 YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 172
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWA 230
+PL A E + L+ GA + + +PL A
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Query: 6 VSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTT 65
++++ D+ + L A GH IVE LL+ + V + K L++ + +
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIV 90
Query: 66 RNLLDKNKHKSLKERK--TAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVS 121
+ LL K + + T ++ A K I +LL ANPD + +
Sbjct: 91 KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--------AKDHYEAT 142
Query: 122 LCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
+R A+ NL + L K + + +D G T L A + ++ + LV++GA
Sbjct: 143 AMHRA----AAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 182 DVNAEDNDNWSPLTYA 197
+ E+ + +PL A
Sbjct: 198 SIYIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 85/168 (50%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
T L WAC GH EIV+ LL+ G V+ W+PL +A E+V+ LL VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
++++GCT L A +EIAV+LL GA + +D + + A G+ ++ LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+I E T ++ A ++ V KLL++ + I K+ TPL
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 209
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 1/192 (0%)
Query: 136 LDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLT 195
L+ L+ + +++A D + TAL +A G V L+ G VN +D+ WSPL
Sbjct: 19 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 196 YAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
AA G ++ LL GA + + G +PL +A+ K + +LL+ A+ +A +Y
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 256 HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+++ AA +G +++ +L+ A N+ D G TPL AC + VE +L+ GA+
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQD-TEGNTPLHLACDEERVEEAKLLVSQGAS 197
Query: 316 VDVAGLWAYMPL 327
+ + PL
Sbjct: 198 IYIENKEEKTPL 209
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 96/215 (44%), Gaps = 14/215 (6%)
Query: 429 CWTPLLVATL---GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG 485
C + L+V L G E+ E +L K D+D TAL AC G+ EI LL G
Sbjct: 4 CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D +G S L A G IV+ALL K V+ + T ++ A K I
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 546 LLLT--ANPDLEIATKDG--DTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
+LL ANPD KD T + +A NL+ I +L+ KA D G+T LH+A
Sbjct: 124 MLLEGGANPD----AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
Query: 602 MRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
++ + + +Y NK +TP +
Sbjct: 180 CDEERVEEAKLLVSQGAS---IYIENKEEKTPLQV 211
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 79/171 (46%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
T L A TE+VE LL+ VN D G + L IA G EI LL GA +N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
+++G + L +A I LL+ + D TA++ A KGN+ ++ +LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
I +G+TPL A +E ++L+ + A I +K T L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 2/187 (1%)
Query: 165 AQKGKLSFVRELVTRGADVNAE-DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
A GKL ++E + + D D+ + L +A G+T++ LL G + +D G
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
WSPL A+ G + V LL K A VNA + L +AA + EI +L++ GA +
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 284 VGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLAT 343
D Y T + A KG+++++ ILL A+ ++ PL+ + + E L
Sbjct: 134 AKDH-YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Query: 344 PLTVGLY 350
+Y
Sbjct: 193 SQGASIY 199
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 292 TPLVWACRKGHVEIVDILLKAGANV---DVAGLWAYMPLYSSALADIFSEPGLATPLTVG 348
T L WAC GH EIV+ LL+ G V D AG W+ + + +SA D + L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALL------- 93
Query: 349 LYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGH 408
GK + + + G TPL +A K
Sbjct: 94 -------GKGAQVNAVNQN----------------------------GCTPLHYAASKNR 118
Query: 409 VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTI 468
EI +LL+ GAN D Y T + A +++ +LL YK + N D +G T L +
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506
AC + E A LL++ GA I I+++ + + KGG
Sbjct: 179 ACDEERVEEAKLLVSQGASIYIENKE-EKTPLQVAKGG 215
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 40/101 (39%)
Query: 130 YIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDND 189
Y A N + L D +D TA+ AA KG L + L+ A N +D +
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 171
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWA 230
+PL A E + L+ GA + + +PL A
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Query: 6 VSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTT 65
++++ D+ + L A GH IVE LL+ + V + K L++ + +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIV 89
Query: 66 RNLLDKNKHKSLKERK--TAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVS 121
+ LL K + + T ++ A K I +LL ANPD + +
Sbjct: 90 KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--------AKDHYEAT 141
Query: 122 LCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
+R A+ NL + L K + + +D G T L A + ++ + LV++GA
Sbjct: 142 AMHRA----AAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 182 DVNAEDNDNWSPLTYA 197
+ E+ + +PL A
Sbjct: 197 SIYIENKEEKTPLQVA 212
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDND-NWSPLTYAAREGYTDVCAELLDHGADLE 217
T L +AA ++ V+ +++GA V+ D N +PL +A R+G+ + +L+ +GAD
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT-EIVALLV 276
D G S + A+ GHT VA L+ K DV+ ++ L+WAA R ++ + LL+
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 277 KKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL 321
VN+GDK + T L WA G+ ++ +LL+AGANVD +
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 4/190 (2%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRD-DNGGTALMFAAQKGKLSFVRELVTRGADVN 184
TL + A +N L + +K + D D T L +A ++G LS V +L+ GAD +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHT-DTVALLL 243
D + S + AA+ G+T + A L+ G D++ D G +PLMWA+Y+ H+ D LLL
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 244 DKNADVNAHGNYHI-SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGH 302
N VN YH ++L WA G T +++LL++ GA V+ + G + L A ++ +
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKN 222
Query: 303 VEIVDILLKA 312
V +++ L +A
Sbjct: 223 VWMINHLQEA 232
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 3/190 (1%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVD-VAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN 456
T L WA +++V + GA VD + G TPL AT +V L++Y + +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 457 ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+D +GC+ + +A + G+ I L+ G +++ D++G + L+ A H LL
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 517 KY-VDVDIPGKERK-TAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
+ V V++ K K TA++ AV GN ++ LLL A +++ G++ L A + +N+
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV 223
Query: 575 EAIQMLIDKK 584
I L + +
Sbjct: 224 WMINHLQEAR 233
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 47/246 (19%)
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+D W + A + G + C EL++ G D+ D + L WA+ D V + K
Sbjct: 6 DDYSTWD-IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64
Query: 246 NADVNA-HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
A V+ G+ + + L WA +G+ +V L+K GA ++ D G + + A + GH
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFGHTS 123
Query: 305 IVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKL 364
IV L+ G +V D+ + G+ TPL W +
Sbjct: 124 IVAYLIAKGQDV-----------------DMMDQNGM-TPLM------WAA--------- 150
Query: 365 KEEMKHFERQGVDPTFTFSSLLFVLVMHLS---YGTTPLVWACRKGHVEIVDILLKAGAN 421
+ VDPT L F + ++L + T L WA G+ ++ +LL+AGAN
Sbjct: 151 ------YRTHSVDPTRLL--LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 422 VDVAGL 427
VD +
Sbjct: 203 VDAQNI 208
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 56/237 (23%)
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKG 301
L++ DV +++ L WAA ++V + KGA V+ +TPL WA R+G
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 302 HVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLL 361
H+ +V L+K GA +P L G G S +
Sbjct: 88 HLSMVVQLMKYGA-----------------------DPSLID----------GEGCSCI- 113
Query: 362 PKLKEEMKHFERQGVDPTFTFSSLLFVLV-------MHLSYGTTPLVWACRKGH-VEIVD 413
H Q F +S++ L+ M G TPL+WA + H V+
Sbjct: 114 --------HLAAQ-----FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 414 ILLKAGANVDVAGLYCW-TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIA 469
+LL +V++ Y T L A L T V+ LLLE NV+A + G +AL +A
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 503 VKGGHRGIVE---ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATK 559
VK GI E L++ DV P KE T ++ A + ++K ++ ++
Sbjct: 14 VKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG 73
Query: 560 D-GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
D TPL A + +L + L+ A + +D G + +H+A + +IV I +
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 619 NNILLYRPNKAGETP 633
+ ++ ++ G TP
Sbjct: 134 DVDMM---DQNGMTP 145
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGK--VRKLSDALNVTDANDQRSTTRNL 68
D G S + A + GH IV L+ K DVD+ + + L A T + D TR L
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD---PTRLL 162
Query: 69 LDKNKHKSLKER---KTAVYTAVEKGNVPILKLLLTANPDLE 107
L N +L ++ TA++ AV GN ++ LLL A +++
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 139 LQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAA 198
++ L++ D+ D G T L A + + L+ RGAD+N +++ + SP YA
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 199 REGYTDVCAELLDHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLL-DKNADVNAHGNYH 256
+G T++ A +L H DL + G + L+ A+ KGH D V LLL D D++ ++
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140
Query: 257 ISSLIWAAG-----RGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
++LI A G + Y +IV LL++ GA ++ D G T + +A +KG+ EI IL +
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS-GRTAMDYANQKGYTEISKILAQ 199
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY-KPN 454
G TPL A +EI L+ GA++++ +P L A TE++ +L++ P+
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAV---KGG--HR 508
+N ++ G AL A + G+ + LLL G I+ Q+ G + LI AV +G ++
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
IV+ L++ D I +TA+ A +KG I K+L N
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 7/180 (3%)
Query: 443 EVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHA 502
+V E+L + V+ +D +G T L IA + EIA L++ GA IN+Q+ DS ++A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 503 VKGGHRGIVEALLKKYV-DVDIPGKERKTAVYTAVEKGNVPILKLLLT-ANPDLEIATKD 560
G I+ +LK D++ + A+ A EKG++ +KLLL D++
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF 139
Query: 561 GDTPLLKAVKTRN-----LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
G T L++AV R + +++L++ A + D G T + A + I ++ +
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 49/235 (20%)
Query: 255 YHISSLIWAAG-RGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
Y + +L+ AA R ++ +L +V+ D G TPL A +EI L+ G
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 314 ANVDVAGLWAYMP-LYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFE 372
A++++ + P LY+ A G++ +L + +KH
Sbjct: 63 ADINLQNSISDSPYLYAGA-----------------------QGRTEILAYM---LKH-- 94
Query: 373 RQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAG-ANVDVAGLYCWT 431
P L H YG L+ A KGH++ V +LL+ G ++D + +T
Sbjct: 95 ---ATPD---------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142
Query: 432 PLLVAT---LGN--FTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLL 481
L+ A GN + ++V+LL+E + + D G TA+ A + GY EI+ +L
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 194 LTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
L AA + T E+L D ++ D G +PL A + + L+D+ AD+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 253 GNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
+ S ++A +G TEI+A ++K YG L+ A KGH++ V +LL+
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 313 G-ANVDVAGLWAYMPL 327
G ++D + Y L
Sbjct: 129 GREDIDFQNDFGYTAL 144
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRG-ADVNAEDNDNWSPLTYAA--REG---YTDVCAELL 210
GG AL+ AA+KG + V+ L+ G D++ +++ ++ L A REG Y D+ L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN 246
++GAD +D G + + +A+ KG+T+ +L N
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 129/289 (44%), Gaps = 23/289 (7%)
Query: 227 LMWASYKGHTDT-VALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVG 285
L+ A+ G+ + +ALL N + +A + L AAG IV LL++ GA V+
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 286 DKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGL---- 341
DK G PL AC GH E+ ++LLK GA V+ LW + PL+ +A + L
Sbjct: 88 DK-GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 342 -ATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQG--------------VDPTFTFSSLL 386
A P V + K + P+L+E + +E +G V T +
Sbjct: 147 GADPTLVNCHGKSAVDMAP-TPELRERLT-YEFKGHSLLQAAREADLAKVKKTLALEIIN 204
Query: 387 FVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVE 446
F V + ++ ++LL+ GANV+ TPL VA +V+E
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 447 LLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
+L ++ +NALD G TAL A G+ + LLL+ G+ +I G
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 129/318 (40%), Gaps = 42/318 (13%)
Query: 161 LMFAAQKGKLSFVRELVTR-GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHR 219
L+ AA+ G + L+T + +A D +PL AA + LL HGAD+ +
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 220 DMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG 279
D GG PL A GH + LLL A VNA + + L AA + E+ +LL+ G
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 280 AK---VNVGDKV---YGTTP-----LVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
A VN K TP L + KGH LL+A D+A + +
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEF-KGHS-----LLQAAREADLAKVKKTL--- 198
Query: 329 SSALADI-FSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLF 387
AL I F +P L+ S L PK K+ + R+G + +
Sbjct: 199 --ALEIINFKQP---QSHETALHCAVAS----LHPKRKQVAELLLRKGANVNEKNKDFM- 248
Query: 388 VLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVEL 447
TPL A + H +++++L K GA ++ T L A L + L
Sbjct: 249 ----------TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298
Query: 448 LLEYKPNVNALDKDGCTA 465
LL Y + + + G TA
Sbjct: 299 LLSYGSDPSIISLQGFTA 316
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 61/258 (23%)
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
E+ L +L T L +D R T L AA ++ V+ L+ GADV+A+D
Sbjct: 37 EEKLMALLTPLNVNCHASDGRKS---TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV 93
Query: 193 PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD---V 249
PL A G+ +V LL HGA + D+ ++PL A+ K + +LLL AD V
Sbjct: 94 PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 250 NAHGNYHI------------------SSLIWAAGRG------------------------ 267
N HG + SL+ AA
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 268 ------------YTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
++ LL++KGA VN +K + TPL A + H +++++L K GA
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF-MTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 316 VDVAGLWAYMPLYSSALA 333
++ L+ +ALA
Sbjct: 273 MNALDSLGQTALHRAALA 290
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G PL AC GH E+ ++LLK GA V+ L+ +TPL A N EV LLL + +
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
++ G +A+ +A E + G S L A + + + L
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTY-----------EFKGHSLLQAAREADLAKVKKTLA 199
Query: 516 KKYVDVDIPGKERKTAVYTAV---EKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTR 572
+ ++ P + +TA++ AV + +LLL ++ KD TPL A +
Sbjct: 200 LEIINFKQP-QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Query: 573 NLEAIQMLIDKKAKITAVDKRGDTVLHIAMRA 604
+ + +++L AK+ A+D G T LH A A
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALA 290
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 97/252 (38%), Gaps = 63/252 (25%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D G L A G L+ GA VNA D ++PL AA + +VC+ LL H
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 213 GADLEHRDMGGWSPLMWA-----------SYKGHT------------------------- 236
GAD + G S + A +KGH+
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206
Query: 237 ---------------------DTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
LLL K A+VN ++ L AA R + +++ +L
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMP--LYSSALA 333
K GAK+N D + G T L A GH++ +LL G++ + L + + + A+
Sbjct: 267 HKHGAKMNALDSL-GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQ 325
Query: 334 DIFSEPGLATPL 345
I SE +TP+
Sbjct: 326 QILSE---STPM 334
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 31/252 (12%)
Query: 395 YGTTPLVWACRKGHVE-IVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
Y L+ A R G+ E ++ +L N + TPL +A N +V+LLL++
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+V+A DK G L AC G+YE+ LLL GA +N D + L A +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 514 LLKKYVD---VDIPGKERKTAVYTAVEKGNVPILKLLLT---ANPDLEIATKDGDTPLLK 567
LL D V+ GK +AV+ P L+ LT L A ++ D L K
Sbjct: 143 LLSHGADPTLVNCHGK-------SAVDMAPTPELRERLTYEFKGHSLLQAAREAD--LAK 193
Query: 568 AVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA---MRARSKTIVEVFIRNPKNNILLY 624
KT LE I + +T LH A + + K + E+ +R N +
Sbjct: 194 VKKTLALEIINF---------KQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VN 241
Query: 625 RPNKAGETPYSI 636
NK TP +
Sbjct: 242 EKNKDFMTPLHV 253
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
++++ + T L AA++ + L GA +NA D+ + L AA G+ C LL
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Query: 211 DHGAD 215
+G+D
Sbjct: 301 SYGSD 305
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A + GH+EIV++LLK GA+V+ Y TPL +A E+VE+LL++ +V
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA D +G T L +A DG+ EI +LL GA +N QD+ G + ++ G+ + E L
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 516 K 516
K
Sbjct: 167 K 167
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D +PL AA+ G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ GH + V +LL ADVNA + L AA G+ EIV +L+K
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
GA VN DK +G T + G+ ++ +IL K
Sbjct: 135 YGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL A+ GH + V +LL ADVNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
NY + L AA G+ EIV +L+K GA VN D G TPL A GH+EIV++LLK G
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 314 ANVD 317
A+V+
Sbjct: 137 ADVN 140
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A E+VE+LL+Y +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
G T L +A +G+ EI +LL GA +N +D G + L A GH IVE LLK
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
DV+ K KTA +++ GN + ++L N
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G T L AA+ G L V L+ GADVNA DN +PL AA G+ ++ LL HGAD+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLV 276
+D G++PL A+Y GH + V +LL ADVNA + ++ + G ++ +L
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 277 K 277
K
Sbjct: 167 K 167
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+YG TPL A GH+EIV++LLK GA+V+ +TPL +A E+VE+LL+Y
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLL 481
+VNA DK G TA I+ +G ++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
YG TPL A GH+EIV++LLK GA+V+ + PL+ +A
Sbjct: 78 N-YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA 121
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D G T L +A K G+ EI +LL GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
G + L A GH IVE LLK DV+ E T ++ A G++ I+++LL
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D G + L A K GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A + G++ I+++LL D+ +G TPL A +LE +++L+ A +
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFIR 615
A DK G T I++ ++ + E+ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
D+ G T L AA G L V L+ GADVNA+D + ++PL AA +G+ ++ LL +G
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AD+ +D G + + G+ D +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ T ++ A + G++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618
G TPL A +LE +++L+ A + A D G T LH+A IVEV ++
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 619 NNILLYRPNKAGETPYSIDMNNQKSILAQ 647
+ + +K G+T + I ++N LA+
Sbjct: 138 D---VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A KT +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A + A D G T LH+A IVEV +++
Sbjct: 71 ADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 82 TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDN--LDSL 139
T ++ A + G++ I+++LL D+ Y ++A DN L+ +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDN------------YGATPLHLAADNGHLEIV 96
Query: 140 QTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAR 199
+ L++ V + +D G T L AA G L V L+ GADVNA+D + +
Sbjct: 97 EVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 200 EGYTDVCAELL 210
G D+ AE+L
Sbjct: 156 NGNEDL-AEIL 165
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 131/289 (45%), Gaps = 35/289 (12%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVN-AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHR 219
L+ A Q + V++L+ GA+VN E+ W+PL A + D+ LL HGAD R
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 220 DMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG 279
G +P + A+ G + L L K ADVN Y ++ + AA G + + L K+G
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 280 AKVNVGDKVY---------GTTPLVWACRKGHVEIVDILL-KAGANV---DVAGLWAYM- 325
A VN+ K G T L+ A KGHVE++ ILL + GA+V D G A +
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 326 PLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKH-------FERQGVDP 378
L SS +D+ + L + + GK+ L+ L E KH E++ ++
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI--LAVEKKHLGLVQRLLEQEHIEI 246
Query: 379 TFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL 427
T S G T L+ A +I ++L K GA+ D L
Sbjct: 247 NDTDSD-----------GKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 134/312 (42%), Gaps = 58/312 (18%)
Query: 294 LVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKW 353
L+ A + V++V LL+ GANV+ E G TPL +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQ-----------------EEEGGWTPLHNAVQMSR 51
Query: 354 GSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVD 413
LL R G DP V+ G TP + A G V+++
Sbjct: 52 EDIVELLL-----------RHGADP-----------VLRKKNGATPFLLAAIAGSVKLLK 89
Query: 414 ILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN----------ALDKDGC 463
+ L GA+V+ Y +T + A + + ++ L + NVN L K G
Sbjct: 90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149
Query: 464 TALTIACKDGYYEIAVLLLNS-GAYINIQDRSGDSNLIHAVKGGHRGIVEA----LLKKY 518
TAL A + G+ E+ +LL+ GA +N D G + LIHA+ VEA LL
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEI--ATKDGDTPLLKAVKTRNLEA 576
DV++ G+ KT + AVEK ++ +++ LL +EI DG T LL AV+ + L+
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLE-QEHIEINDTDSDGKTALLLAVELK-LKK 267
Query: 577 IQMLIDKKAKIT 588
I L+ K+ T
Sbjct: 268 IAELLCKRGAST 279
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 124/301 (41%), Gaps = 28/301 (9%)
Query: 194 LTYAAREGYTDVCAELLDHGADLE-HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
L A + D+ +LL+ GA++ + GGW+PL A D V LLL AD
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 253 GNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
+ + AA G +++ L + KGA VN D YG T + A G V+ + L K
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 313 GANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFE 372
GANV+ L D + L L G +L L +EM
Sbjct: 128 GANVN---------LRRKTKED---QERLRKGGATALMDAAEKGHVEVLKILLDEM---- 171
Query: 373 RQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTP 432
G D + L+ L V A I +LL GA+V+V G TP
Sbjct: 172 --GADVNACDNMGRNALIHALLSSDDSDVEA-------ITHLLLDHGADVNVRGERGKTP 222
Query: 433 LLVATLGNFTEVVELLLEYKP-NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQ 491
L++A +V+ LLE + +N D DG TAL +A + +IA LL GA +
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Query: 492 D 492
D
Sbjct: 283 D 283
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 50/266 (18%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYC-WTPLLVATLGNFTEVVELLLEYKPNVNAL 458
L+ A + V++V LL+ GANV+ WTPL A + ++VELLL + +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
K+G T +A G ++ L L+ GA +N D G + + A G ++ L K+
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 519 VDVDIPGKERK----------TAVYTAVEKGNVPILK----------------------- 545
+V++ K ++ TA+ A EKG+V +LK
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 546 ---------------LLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK-AKITA 589
LLL D+ + + G TPL+ AV+ ++L +Q L++++ +I
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248
Query: 590 VDKRGDTVLHIAMRARSKTIVEVFIR 615
D G T L +A+ + K I E+ +
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCK 274
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 9/152 (5%)
Query: 146 KRTVADDRD---DNGGTALMFAAQKGKLSFVRELVTR-GADVNAEDNDNWSPLTYAA-RE 200
+R +D++ G TALM AA+KG + ++ L+ GADVNA DN + L +A
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 201 GYTDVCA---ELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK-NADVNAHGNYH 256
+DV A LLDHGAD+ R G +PL+ A K H V LL++ + ++N +
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
++L+ A +I LL K+GA + GD V
Sbjct: 254 KTALLLAVELKLKKIAELLCKRGASTDCGDLV 285
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
+ +++D +Q LE V ++ G T L A Q + V L+ GAD +
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72
Query: 191 WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVN 250
+P AA G + L GAD+ D G++ M A+ G + L + A+VN
Sbjct: 73 ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 251 AHGNYH----------ISSLIWAAGRGYTEIVALLVKK-GAKVNVGDKVYGTTPLVWA-- 297
++L+ AA +G+ E++ +L+ + GA VN D + G L+ A
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM-GRNALIHALL 191
Query: 298 -CRKGHVE-IVDILLKAGANVDVAGLWAYMPL 327
VE I +LL GA+V+V G PL
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 33/159 (20%)
Query: 61 QRSTTRNLLDKNKHKSLKERK---TAVYTAVEKGNVPILKLLL----------------- 100
+R NL K K + RK TA+ A EKG+V +LK+LL
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185
Query: 101 -------TANPDLEIATKTLPRSDSMVSLCYRTLQS----YIAEDNLDSLQTFLENKRTV 149
+ + D+E T L + V++ ++ + + +L +Q LE +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVT-RGADVNAED 187
+D D +G TAL+ A + KL + EL+ RGA + D
Sbjct: 246 INDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDCGD 283
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GAD NA D+ +PL AA G+ ++ LL +GAD+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ GH + V +LL ADVNA I+ L AA G+ EIV +L+K
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA VN DK +G T + G+ ++ +IL
Sbjct: 123 HGADVNAQDK-FGKTAFDISIDIGNEDLAEIL 153
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 81/148 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+ + Y TPL +A E+VE+LL +VNA+D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
+G T L +A G+ EI +LL GA +N +D +G + L A GH IVE LLK
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV+ K KTA +++ GN + ++L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKP 453
YG TPL A GH+EIV++LL+ GA+V+ TPL L A+LG+ E+VE+LL+Y
Sbjct: 34 YGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHL-EIVEVLLKYGA 92
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VNA D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Query: 514 L 514
L
Sbjct: 153 L 153
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD D G +PL A+ GH + V +LL ADVNA
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA G+ EIV +L+K GA VN D G TPL A GH+EIV++LLK G
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDAT-GITPLYLAAYWGHLEIVEVLLKHG 124
Query: 314 ANVD 317
A+V+
Sbjct: 125 ADVN 128
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 59/106 (55%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
A+ D G T L AA G L V L+ GADVNA D + +PL AA G+ ++ L
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL 87
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
L +GAD+ +D G +PL A+Y GH + V +LL ADVNA +
Sbjct: 88 LKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKF 133
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ AD NA+ +Y + L AA G+ EIV +L++ GA VN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
GTTPL A GH+EIV++LLK GA+V+ PLY +A
Sbjct: 66 -TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA 109
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA N D G + L A GH IVE LL+ DV+
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
T ++ A G++ I+++LL D+ G TPL A +LE +++L+ A +
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVF 613
A DK G T I++ ++ + E+
Sbjct: 129 AQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ + NA D G T L +A G+ EI +LL +GA +N D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+G + L A GH IVE LLK DV+ T +Y A G++ I+++LL
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ K G T ++ N + ++L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ L N V + D NG T L AA G L V L+ GADVNA+D +PL
Sbjct: 47 HLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPL 105
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA G+ ++ LL HGAD+ +D G + + G+ D +L
Sbjct: 106 YLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 535 AVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRG 594
A G +++L+ D G TPL A +LE +++L+ A + AVD G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 595 DTVLHIAMRARSKTIVEVFIR 615
T LH+A IVEV ++
Sbjct: 69 TTPLHLAASLGHLEIVEVLLK 89
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
LL+A + + +++L+ A A D G T LH+A IVEV +RN
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN 57
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 131/289 (45%), Gaps = 35/289 (12%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVN-AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHR 219
L+ A Q + V++L+ GA+VN E+ W+PL A + D+ LL HGAD R
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 220 DMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG 279
G +P + A+ G + L L K ADVN Y ++ + AA G + + L K+G
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 280 AKVNVGDKVY---------GTTPLVWACRKGHVEIVDILL-KAGANV---DVAGLWAYM- 325
A VN+ K G T L+ A KGHVE++ ILL + GA+V D G A +
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208
Query: 326 PLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKH-------FERQGVDP 378
L SS +D+ + L + + GK+ L+ L E KH E++ ++
Sbjct: 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI--LAVEKKHLGLVQRLLEQEHIEI 266
Query: 379 TFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL 427
T S G T L+ A +I ++L K GA+ D L
Sbjct: 267 NDTDSD-----------GKTALLLAVELKLKKIAELLCKRGASTDCGDL 304
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 147/338 (43%), Gaps = 45/338 (13%)
Query: 293 PLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAK 352
P + R+ VE +L+KA N DV L A + E G TPL +
Sbjct: 13 PTSSSGRRAAVEDNHLLIKAVQNEDVD--LVQQLLEGGANVNFQEEEGGWTPLHNAVQMS 70
Query: 353 WGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIV 412
LL R G DP V+ G TP + A G V+++
Sbjct: 71 REDIVELLL-----------RHGADP-----------VLRKKNGATPFILAAIAGSVKLL 108
Query: 413 DILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN----------ALDKDG 462
+ L GA+V+ Y +T + A + + ++ L + NVN L K G
Sbjct: 109 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 168
Query: 463 CTALTIACKDGYYEIAVLLLNS-GAYINIQDRSGDSNLIHAVKGGHRGIVEA----LLKK 517
TAL A + G+ E+ +LL+ GA +N D G + LIHA+ VEA LL
Sbjct: 169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPIL-KLLLTANPDLEIATKDGDTPLLKAVKTRNLEA 576
DV++ G+ KT + AVEK ++ ++ +LL + ++ DG T LL AV+ + L+
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK-LKK 287
Query: 577 IQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
I L+ K+ T GD V+ A R ++V+V +
Sbjct: 288 IAELLCKRGASTDC---GDLVM-TARRNYDHSLVKVLL 321
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 146 KRTVADDRD---DNGGTALMFAAQKGKLSFVRELVTR-GADVNAEDNDNWSPLTYAA-RE 200
+R +D++ G TALM AA+KG + ++ L+ GADVNA DN + L +A
Sbjct: 154 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 213
Query: 201 GYTDVCA---ELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK-NADVNAHGNYH 256
+DV A LLDHGAD+ R G +PL+ A K H V LL++ + ++N +
Sbjct: 214 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 273
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGH-VEIVDILLKAGAN 315
++L+ A +I LL K+GA + GD LV R+ + +V +LL GA
Sbjct: 274 KTALLLAVELKLKKIAELLCKRGASTDCGD-------LVMTARRNYDHSLVKVLLSHGAK 326
Query: 316 VD 317
D
Sbjct: 327 ED 328
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
+ +++D +Q LE V ++ G T L A Q + V L+ GAD +
Sbjct: 33 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 92
Query: 191 WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVN 250
+P AA G + L GAD+ D G++ M A+ G + L + A+VN
Sbjct: 93 ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
Query: 251 AHGNYH----------ISSLIWAAGRGYTEIVALLVKK-GAKVNVGDKVYGTTPLVWA-- 297
++L+ AA +G+ E++ +L+ + GA VN D + G L+ A
Sbjct: 153 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM-GRNALIHALL 211
Query: 298 -CRKGHVE-IVDILLKAGANVDVAGLWAYMPL 327
VE I +LL GA+V+V G PL
Sbjct: 212 SSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 61 QRSTTRNLLDKNKHKSLKERK---TAVYTAVEKGNVPILKLLL----------------- 100
+R NL K K + RK TA+ A EKG+V +LK+LL
Sbjct: 146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 205
Query: 101 -------TANPDLEIATKTLPRSDSMVSLCYRTLQS----YIAEDNLDSLQTFLENKRTV 149
+ + D+E T L + V++ ++ + + +L +Q LE +
Sbjct: 206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVT-RGADVNAEDNDNWSPLTYAAREGYTDVCAE 208
+D D +G TAL+ A + KL + EL+ RGA + D L AR Y +
Sbjct: 266 INDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDCGD------LVMTARRNYDHSLVK 318
Query: 209 -LLDHGA 214
LL HGA
Sbjct: 319 VLLSHGA 325
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
NA DK+G T L +A ++G+ E+ LLL +GAY
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
NG T L AA+ G L V+ L+ GADVNA+D + +PL AAR G+ +V LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+ +D G +PL A+ GH + V LLL+ A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G +PL A+ GH + V LLL+ ADVNA + L AA G+ E+V LL++ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
N DK G TPL A R GH+E+V +LL+AGA
Sbjct: 62 NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ +PL AAR G+ +V LL+ GAD+ +D G +PL A+ GH + V LLL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
VNA + L AA G+ E+V LL++ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL +A EVV+LLLE +VNA DK+G T L +A ++G+ E+ LLL +GA +N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLK 516
+D++G + L A + GH +V+ LL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
+G T L +A ++G+ E+ LLL +GA +N +D++G + L A + GH +V+ LL+ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
V+ K +T ++ A G++ ++KLLL A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ L AA G+ E+V LL++ GA VN DK G TPL A R GH+E+V +LL+AGA+V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 318 VAGLWAYMPLYSSA 331
PL+ +A
Sbjct: 63 AKDKNGRTPLHLAA 76
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
+T ++ A G++ ++KLLL A D+ K+G TPL A + +LE +++L++ A +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFI 614
A DK G T LH+A R +V++ +
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+L+ ++ LE V + +D NG T L AA+ G L V+ L+ GADVNA+D + +PL
Sbjct: 14 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 195 TYAAREGYTDVCAELLDHGA 214
AAR G+ +V LL+ GA
Sbjct: 73 HLAARNGHLEVVKLLLEAGA 92
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 494 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPD 553
+G + L A + GH +V+ LL+ DV+ K +T ++ A G++ ++KLLL A D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 554 LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
+ K+G TPL A + +LE +++L++ A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 40/131 (30%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGL 349
G TPL A R GH+E+V +LL+AGA+V+ PL+ L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH--------------------L 41
Query: 350 YAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHV 409
A+ G E +K G D + G TPL A R GH+
Sbjct: 42 AARNGH---------LEVVKLLLEAGADVNAKDKN-----------GRTPLHLAARNGHL 81
Query: 410 EIVDILLKAGA 420
E+V +LL+AGA
Sbjct: 82 EVVKLLLEAGA 92
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 560 DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619
+G TPL A + +LE +++L++ A + A DK G T LH+A R +V++ + +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 620 NILLYRPNKAGETPYSIDMNN 640
+ +K G TP + N
Sbjct: 61 ---VNAKDKNGRTPLHLAARN 78
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
G VN D SPL AA G D+ LL HGA+ R+ PL A +GH V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACR 299
LLD NA N + LI+A G+ E+VALL++ GA +N + G T L A
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN-KGNTALHEAVI 194
Query: 300 KGHVEIVDILLKAGANVDV 318
+ HV +V++LL GA+V V
Sbjct: 195 EKHVFVVELLLLHGASVQV 213
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G++PL A G +++ +LLK GAN PL +A +VV+ LL+
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N D G T L AC G++E+ LLL GA IN + G++ L AV H +VE LL
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
V + K ++TAV A + N I++LL
Sbjct: 206 LHGASVQVLNKRQRTAVDCA--EQNSKIMELL 235
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%)
Query: 418 AGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEI 477
+G V+V +PL VA L +++ LLL++ N A + D L +AC+ G++++
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 478 AVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVE 537
LL+S A N +D SG++ LI+A GGH +V LL+ ++ + TA++ AV
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 538 KGNVPILKLLLTANPDLEIATKDGDT 563
+ +V +++LLL +++ K T
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRT 220
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
Query: 87 AVEKGNVPILKLLLT-ANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLEN 145
AV G++ +++ LL DLE A T+ +D C+ Q L +
Sbjct: 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADP--EFCHPLCQCPKCAPAQKRLAKVPAS 75
Query: 146 KRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDV 205
V D G + L AA G+ + L+ GA+ A + D PL A ++G+ V
Sbjct: 76 GLGVNVTSQD-GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 206 CAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAG 265
LLD A +D+ G +PL++A GH + VALLL A +NA N ++L A
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 266 RGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+ +V LL+ GA V V +K T C + + +I+++L
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTA---VDCAEQNSKIMELL 235
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G SPL A+ G D + LLL A+ A L A +G+ ++V L+ AK
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
N D + G TPL++AC GH E+V +LL+ GA+++ +
Sbjct: 146 NKKD-LSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 433 LLVATLGNFTEVVELLLEY--------KPNVNALDKDGCTALTIA--CKDGYYEIAVLLL 482
LL A E+V LLE+ + V+A D + C L C +A +
Sbjct: 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74
Query: 483 NSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVP 542
SG +N+ + G S L A G ++ LLK + ++ ++ A ++G+
Sbjct: 75 -SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 543 ILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAM 602
++K LL +N G+TPL+ A + E + +L+ A I A + +G+T LH A+
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Query: 603 RARSKTIVEVFI 614
+ +VE+ +
Sbjct: 194 IEKHVFVVELLL 205
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VN +DG + L +A G ++ LLL GA ++ L A + GH +V+ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
L + T + A G+ ++ LLL + + G+T L +AV +++
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIA 601
+++L+ A + ++KR T + A
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDK-VYGTTPLVWACRKGHVEIVDILLKAGANV 316
S L AA G +++ LL+K GA N G + PL AC++GH ++V LL + A
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 317 DVAGLWAYMPL 327
+ L PL
Sbjct: 146 NKKDLSGNTPL 156
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%)
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
V++ ++ + ++ A G ++ LLL + D PL A + + + ++ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 581 IDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
+D AK D G+T L A +V + +++
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 8 SKRDRSGDSNLIHAVKGGHRGIVEALLK 35
+K+D SG++ LI+A GGH +V LL+
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQ 173
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 27/226 (11%)
Query: 403 ACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
AC G E V LL+ GA+++ A + T L A + + ++V+ L+E N+N D +G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNL-IHAVKGGHRGIVEALLKKYVDV 521
L A GY +IA L++ GA++ + GD+ L I + + + ++ VD+
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 522 DIPGKERK--------------------------TAVYTAVEKGNVPILKLLLTANPDLE 555
+ KE + TA++ A KG +LKLL+ A D+
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226
Query: 556 IATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
I DG TPL A EA ++L++ + AV+K G T +A
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 23/236 (9%)
Query: 263 AAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLW 322
A G TE V L+++GA +N + V G T L AC +V++V L++ GAN++
Sbjct: 47 ACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 323 AYMPLYSSALADIF--SEPGLATPLTVGLYAKWGSGK---SFLLPKLKEEMKHFERQGVD 377
++PL+++A +E ++ VG G + + RQGVD
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 378 PTFTFSSLLFVL---------------VMHLSYGTTPLVWACRKGHVEIVDILLKAGANV 422
++ V H G T L A KG+ E++ +L++A +V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 423 DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD--GYYE 476
++ WTPL A E +L+E ++ A++K G TA +A +D GY E
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+G TAL A + V+ LV GA++N DN+ W PL AA GY D+ L+ GA
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131
Query: 216 LEHRDMGGWSPL----------------------MWASYKGHTDTVALLLDKNADVNA-- 251
+ + G +PL + A+ K + +L D +N+
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK--EEERIMLRDARQWLNSGH 189
Query: 252 -----HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIV 306
H ++L AA +GYTE++ LL++ VN+ D G TPL A G E
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEAC 248
Query: 307 DILLK 311
IL++
Sbjct: 249 RILVE 253
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 26/200 (13%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G + A G V L+ RGAD+N + D + L A + D+ L+++GA++
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNAD---VNAHGNYHI----------------- 257
D GW PL A+ G+ D L+ + A VN+ G+ +
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 258 -SSLIWAAGRGYTEIVAL-----LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
+ A R E + L + G +V G T L A KG+ E++ +L++
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 312 AGANVDVAGLWAYMPLYSSA 331
A +V++ + PL+++A
Sbjct: 221 ARYDVNIKDYDGWTPLHAAA 240
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+GGTAL AA KG ++ L+ DVN +D D W+PL AA G + C L+++ D
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 216 LE 217
+E
Sbjct: 258 ME 259
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D+ + A G T+ LL+ GAD+ + ++ G + L A + D V L++ A+
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPL 294
+N N L AA GY +I L+ +GA V + G TPL
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS-EGDTPL 143
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 192 SPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
+ L AA +GYT+V L+ D+ +D GW+PL A++ G + +L++ D+ A
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
K G TAL +A GY E+ LL+ + +NI+D G + L A G L++
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 520 DVDIPGKERKTAVYTAVE 537
D++ K +TA A E
Sbjct: 257 DMEAVNKVGQTAFDVADE 274
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ D G +PL A+ GH + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA N+ I+ L AA RG+ EIV +L+K GA VN DK +G T + G+ ++ +
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAE 130
Query: 308 ILLK 311
IL K
Sbjct: 131 ILQK 134
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D D +PL AA+ G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ +GH + V +LL ADVNA + ++ + G ++ +L K
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A + GH+EIV++LLK GA+V+ + TPL +A + E+VE+LL++ +V
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLL 481
NA DK G TA I+ +G ++A +L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA ++ L AA G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+G TPL A +GH+EIV++LLK GA+V+
Sbjct: 78 N-FGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPNVNAL 458
L+ A R G + V IL+ GA+V+ TPL L A LG+ E+VE+LL+Y +VNA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHL-EIVEVLLKYGADVNAE 76
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
D G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNALD+DG T L +A + G+ EI +LL GA +N +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G + L A GH IVE LLK DV+ K KTA +++ GN + ++L N
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
D++G T L AAQ G L V L+ GADVNAEDN +PL AA G+ ++ LL HG
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AD+ +D G + + G+ D +L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D+ G TPL A + GH+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDE-DGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 320 GLWAYMPLYSSAL 332
+ PL+ +A+
Sbjct: 77 DNFGITPLHLAAI 89
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ +DG TPL A + +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + A D G T LH+A IVEV +++ + + +K G+T + I ++N
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
++G TPL A +GH+EIV++LLK GA+V+ + T ++ ++ E+L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D G + L A + GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
T ++ A +G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPN 454
G TPL A ++GH+EIV++LLK GA+V+ + ++ TPL L AT+G+ E+VE+LLEY +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL-EIVEVLLEYGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLL 481
VNA DK G TA I+ +G ++A +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ A + G+ VR L+ GADVNA D+ +PL AA+ G+ ++ LL HGAD+
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D+ G +PL A+ GH + V +LL+ ADVNA + ++ + G ++ +L K
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + ++ L AA RG+ EIV +L+K GA VN D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
++G TPL A GH+EIV++LL+ GA+V+
Sbjct: 78 -IWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L A R G D L+ +GAD+ D G +PL A+ +GH + V +LL ADVNA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
+ + L AA G+ EIV +L++ GA VN DK +G T + G+ ++ +IL K
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 134
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL AT + V +L+ +VNA+D G T L +A K G+ EI +LL GA +N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G + L A GH IVE LL+ DV+ K KTA +++ GN + ++L N
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A E+VE+LL++ +VNA D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ A G + V +L+ GA VN D G TPL A ++GH+EIV++LLK GA+V+ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 320 GLWAYMPLYSSA 331
+W PL+ +A
Sbjct: 77 DIWGRTPLHLAA 88
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
DD G T L AA++G L V L+ GADVNA D +PL AA G+ ++ LL++G
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AD+ +D G + + G+ D +L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A K +LE +++L+
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + A D G T LH+A IVEV + + + +K G+T + I ++N
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D +G + L A K GH IVE LLK DV+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
+T ++ A G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
+G TPL A GH+EIV++LL+ GA+V+ + T ++ ++ E+L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPN 454
G TPL A ++GH+EIV++LLK GA+V+ ++ TPL L AT+G+ E+VE+LLEY +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL-EIVEVLLEYGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLL 481
VNA DK G TA I+ +G ++A +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ A + G+ VR L+ GADVNA D+ +PL AA+ G+ ++ LL HGAD+
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
RD+ G +PL A+ GH + V +LL+ ADVNA + ++ + G ++ +L K
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + ++ L AA RG+ EIV +L+K GA VN D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
++G TPL A GH+EIV++LL+ GA+V+
Sbjct: 78 -IWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L A R G D L+ +GAD+ D G +PL A+ +GH + V +LL ADVNA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
+ + L AA G+ EIV +L++ GA VN DK +G T + G+ ++ +IL K
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 134
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL AT + V +L+ +VNA+D G T L +A K G+ EI +LL GA +N +D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G + L A GH IVE LL+ DV+ K KTA +++ GN + ++L N
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A E+VE+LL++ +VNA D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ A G + V +L+ GA VN D G TPL A ++GH+EIV++LLK GA+V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 320 GLWAYMPLYSSA 331
+W PL+ +A
Sbjct: 77 DIWGRTPLHLAA 88
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
DD G T L AA++G L V L+ GADVNA D +PL AA G+ ++ LL++G
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AD+ +D G + + G+ D +L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A K +LE +++L+
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + A D G T LH+A IVEV + + + +K G+T + I ++N
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D +G + L A K GH IVE LLK DV+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
+T ++ A G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
+G TPL A GH+EIV++LL+ GA+V+ + T ++ ++ E+L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
RD G T L AA G L V L+ GADVNA+D + + G D+ AE+L
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL-AEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPN 454
G TPL A ++GH+EIV++LLK GA+V+ + + TPL L AT+G+ E+VE+LLEY +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL-EIVEVLLEYGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLL 481
VNA DK G TA I+ +G ++A +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ A + G+ VR L+ GADVNA D+ +PL AA+ G+ ++ LL HGAD+
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ GH + V +LL+ ADVNA + ++ + G ++ +L K
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA + ++ L AA RG+ EIV +L+K GA VN D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+G TPL A GH+EIV++LL+ GA+V+
Sbjct: 78 S-WGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L A R G D L+ +GAD+ D G +PL A+ +GH + V +LL ADVNA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
++ + L AA G+ EIV +L++ GA VN DK +G T + G+ ++ +IL K
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 134
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL AT + V +L+ +VNA+D G T L +A K G+ EI +LL GA +N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G + L A GH IVE LL+ DV+ K KTA +++ GN + ++L N
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A E+VE+LL++ +VNA D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
G T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ A G + V +L+ GA VN D G TPL A ++GH+EIV++LLK GA+V+ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 320 GLWAYMPLYSSA 331
W PL+ +A
Sbjct: 77 DSWGRTPLHLAA 88
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
DD G T L AA++G L V L+ GADVNA D+ +PL AA G+ ++ LL++G
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AD+ +D G + + G+ D +L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ G TPL A K +LE +++L+
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + A D G T LH+A IVEV + + + +K G+T + I ++N
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N D +G + L A K GH IVE LLK DV+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
+T ++ A G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
S+G TPL A GH+EIV++LL+ GA+V+ + T ++ ++ E+L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 76/127 (59%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+D+D G TAL++A + +L +L+++G++VN +D +PL ++ GY+++ LL
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
+HGA++ R++ G +PL+ AS G ++ V LL+ AD++A +++ A G E
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181
Query: 271 IVALLVK 277
++ + +
Sbjct: 182 VIKIFTE 188
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
N D+ N +PL A G + +L+++ LE +D+ G + L+WA LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHV 303
K ++VN + L+W+ GY+E+ L++ GA VN + G TPL+ A + G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRS 147
Query: 304 EIVDILLKAGANV---DVAGLWA 323
EIV LL+ GA++ D+ GL A
Sbjct: 148 EIVKKLLELGADISARDLTGLTA 170
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
NLD L+ + RD T LM A G + + +LV + +D + + L
Sbjct: 23 NLDFLRNY----------RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTAL 72
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGN 254
+A + + +LL G+++ +D G +PLMW+ G+++ LL+ A+VN
Sbjct: 73 IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL 132
Query: 255 YHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+ LI A+ G +EIV L++ GA ++ D + G T A G E++ I
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARD-LTGLTAEASARIFGRQEVIKIF 186
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
SY TPL+ AC G +D L++ ++ + T L+ A N + E LL
Sbjct: 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
NVN D G T L + GY E++ LL GA +N ++ G++ LI A K G IV+
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
LL+ D+ TA +A G ++K+
Sbjct: 153 LLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 218 HRDMGGWSPLMWASYKGHTDTVALL---LDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
+RD +PLM A G + + L DK D + G+ ++LIWA I
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS---TALIWAVKNNRLGIAEK 86
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
L+ KG+ VN D G TPL+W+ G+ E+ LL+ GANV+ L PL
Sbjct: 87 LLSKGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%)
Query: 428 YCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
Y TPL+VA + ++ L+E + D +G TAL A K+ IA LL+ G+
Sbjct: 34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
+N +D SG + L+ ++ G+ + LL+ +V+ E +T + A + G I+K L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 548 LTANPDL 554
L D+
Sbjct: 154 LELGADI 160
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%)
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N D T L +AC G L+ + + +D G + LI AVK GI E LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
K +V+ KT + ++ G + LL ++ +G+TPL+ A K E
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613
++ L++ A I+A D G T A + ++++F
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 57/219 (26%)
Query: 243 LDKNADV--NAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRK 300
+++N D N +Y+ + L+ A G + LV+ K+ D + G+T L+WA +
Sbjct: 20 INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD-IEGSTALIWAVKN 78
Query: 301 GHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFL 360
+ I + LL G+NV+ PL S +
Sbjct: 79 NRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII---------------------------- 110
Query: 361 LPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLS-------YGTTPLVWACRKGHVEIVD 413
F +S + + L+ H + G TPL+ A + G EIV
Sbjct: 111 -------------------FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 414 ILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
LL+ GA++ L T A + EV+++ E +
Sbjct: 152 KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 198 AREGYTDVCAELLDHGADLEHR-DMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
A +G D E L G +L ++ D G++PL+WAS G +TV LL+ AD +
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
S+L A+ GYT+IV LL+++ +N+ D G TPL++A R HV+ V+ LL GA++
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 317 DVAGLWAYMPL 327
Y P+
Sbjct: 129 TTEADSGYTPM 139
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
++ A+ LD L+ L + + D+ G T L++A+ G++ VR L+ GAD +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+ S L+ A+ GYTD+ LL+ D+ D G +PL++A H V LL +
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEI 271
AD+ + + + A GY ++
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKV 150
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL+WA G +E V LL+ GA+ + + L +A+ G +T++V LLLE ++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D +G T L A + + + LL GA + + SG + + AV G+R + + +
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+TPL+ A+ E V LLE+ + + L K+ +AL++A GY +I LLL IN
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539
I D +G + L++AV+G H VEALL + D+ T + AV G
Sbjct: 97 IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
+N D G + LI A G V LL+ D I KER++A+ A G I+ LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 548 LTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607
L + D+ I +G TPLL AV+ +++ ++ L+ + A +T G T + +A+ +
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 608 TIVEVFIRNPKNNIL-LYRPNKAGETP 633
+ +V +N+IL L++ N P
Sbjct: 149 KVQQVI----ENHILKLFQSNLVPADP 171
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%)
Query: 435 VATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRS 494
+A G ++ E L + VN D+ G T L A G E LL GA +I +
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68
Query: 495 GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDL 554
+S L A GG+ IV LL++ VD++I T + AV +V ++ LL DL
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 555 EIATKDGDTPLLKAV 569
G TP+ AV
Sbjct: 129 TTEADSGYTPMDLAV 143
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
D NGGT L++A + + V L+ RGAD+ E + ++P+ A GY V + +H
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA+D +PL A G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G++PL A++ GH + +LL ADVNA + ++ + G G ++ +L K
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ Y TPL +AT E+VE+LL+ +VNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
G T L +A G+ EIA +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
YG TPL A GH+EIV++LLK GA+V+ +TPL +A E+ E+LL++
Sbjct: 45 EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLL 481
+VNA DK G TA I+ +G ++A +L
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA Y ++ L A G+ EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ G TPL A GH+EI ++LLK GA+V+
Sbjct: 78 AI-GFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ +D G +PL A+ GH + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA + L AA G+ EI +L+K GA VN DK +G T + G+ ++ +
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAE 130
Query: 308 ILLK 311
IL K
Sbjct: 131 ILQK 134
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D+ YG TPL A GH+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 320 GLWAYMPLYSSAL 332
+ PL+ +A
Sbjct: 77 DAIGFTPLHLAAF 89
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D+ G T L +A G+ EI +LL +GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G + L A GH I E LLK DV+ K KTA ++ GN + ++L N
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + +D+ G T L A G L V L+ GADVNA D ++PL
Sbjct: 28 DEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA G+ ++ LL HGAD+ +D G + + G+ D +L
Sbjct: 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ + G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + AVD G T LH+A I EV +++ + + +K G+T + I + N
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D G + L A GH IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
T ++ A G++ I ++LL D+ K G T ++ N + ++L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
++ A+ + L T +E + V + D+ G T LM+AA G+++ V L+ GAD
Sbjct: 6 SVHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
S L+ A +GYTD+ LLD G D+ D G +PL++A + H V +LL+
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEI 271
AD + +S+ A GY +
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSV 150
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ H D G++PLMWA+ G V LL AD G S+L A +GYT+IV +L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+ G VN D G TPL++A HV+ V +LL++GA+
Sbjct: 89 LDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL+WA G + +V+ LL+ GA+ + G + L +A +T++V++LL+ +V
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D +G T L A + + +LL SGA I+ SG +++ AV G+R + + +
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%)
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
IN D G + L+ A G +VE LL+ D + GK R++A+ A KG I+K+L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 548 LTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607
L D+ +G TPLL AV +++ ++ML++ A T G + +A+ +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 608 TIVEVF 613
++ +V
Sbjct: 149 SVQQVI 154
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+TPL+ A VVE LL+ + L K +AL++AC GY +I +LL+ G +N
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI 523
D +G + L++AV G H V+ LL+ D I
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508
+E + +N D++G T L A G + LL +GA + + +S L A G+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDG 561
IV+ LL VDV+ T + AV +V +K+LL + D I T G
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
+ L+WAA G +V L++ GA + K + L AC KG+ +IV +LL G +V
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 317 D 317
+
Sbjct: 96 N 96
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+E T + A G + +++ LL D ++ K R ++ C + D
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSLACSKGYT--------D 83
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
++ L+ V ++ D NGGT L++A + V+ L+ GAD E + ++ + A
Sbjct: 84 IVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 198 AREGYTDV 205
GY V
Sbjct: 143 VALGYRSV 150
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 264 AGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAG 320
A +G +A +++ +N D+ G TPL+WA G + +V+ LL+ GA+ + G
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
++ A+ + L T +E + V + D+ G T LM+AA G+++ V L+ GAD
Sbjct: 4 SVHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 62
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
S L+ A +GYTD+ LLD G D+ D G +PL++A + H V +LL+
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEI 271
AD + +S+ A GY +
Sbjct: 123 GADPTIETDSGYNSMDLAVALGYRSV 148
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ H D G++PLMWA+ G V LL AD G S+L A +GYT+IV +L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+ G VN D G TPL++A HV+ V +LL++GA+
Sbjct: 87 LDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL+WA G + +V+ LL+ GA+ + G + L +A +T++V++LL+ +V
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D +G T L A + + +LL SGA I+ SG +++ AV G+R + + +
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%)
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
IN D G + L+ A G +VE LL+ D + GK R++A+ A KG I+K+L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 548 LTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607
L D+ +G TPLL AV +++ ++ML++ A T G + +A+ +
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 608 TIVEVF 613
++ +V
Sbjct: 147 SVQQVI 152
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+TPL+ A VVE LL+ + L K +AL++AC GY +I +LL+ G +N
Sbjct: 35 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 94
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539
D +G + L++AV G H V+ LL+ D I ++ AV G
Sbjct: 95 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508
+E + +N D++G T L A G + LL +GA + + +S L A G+
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDG 561
IV+ LL VDV+ T + AV +V +K+LL + D I T G
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
+ L+WAA G +V L++ GA + K + L AC KG+ +IV +LL G +V
Sbjct: 35 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 317 D 317
+
Sbjct: 94 N 94
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+E T + A G + +++ LL D ++ K R ++ C + D
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSLACSKGYT--------D 81
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
++ L+ V ++ D NGGT L++A + V+ L+ GAD E + ++ + A
Sbjct: 82 IVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 198 AREGYTDV 205
GY V
Sbjct: 141 VALGYRSV 148
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 264 AGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAG 320
A +G +A +++ +N D+ G TPL+WA G + +V+ LL+ GA+ + G
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Query: 132 AEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNW 191
A+ + L T +E + V + D+ G T LM+AA G+++ V L+ GAD
Sbjct: 28 AQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 86
Query: 192 SPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
S L+ A +GYTD+ LLD G D+ D G +PL++A + H V +LL+ AD
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
Query: 252 HGNYHISSLIWAAGRGYTEI 271
+ +S+ A GY +
Sbjct: 147 ETDSGYNSMDLAVALGYRSV 166
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ H D G++PLMWA+ G V LL AD G S+L A +GYT+IV +L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+ G VN D G TPL++A HV+ V +LL++GA+
Sbjct: 105 LDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL+WA G + +V+ LL+ GA+ + G + L +A +T++V++LL+ +V
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D +G T L A + + +LL SGA I+ SG +++ AV G+R + + +
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%)
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
IN D G + L+ A G +VE LL+ D + GK R++A+ A KG I+K+L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 548 LTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607
L D+ +G TPLL AV +++ ++ML++ A T G + +A+ +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 608 TIVEVF 613
++ +V
Sbjct: 165 SVQQVI 170
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+TPL+ A VVE LL+ + L K +AL++AC GY +I +LL+ G +N
Sbjct: 53 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 112
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI 523
D +G + L++AV G H V+ LL+ D I
Sbjct: 113 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508
+E + +N D++G T L A G + LL +GA + + +S L A G+
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDG 561
IV+ LL VDV+ T + AV +V +K+LL + D I T G
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
+ L+WAA G +V L++ GA + K + L AC KG+ +IV +LL G +V
Sbjct: 53 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 317 D 317
+
Sbjct: 112 N 112
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+E T + A G + +++ LL D ++ K R ++ C + D
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSLACSKGYT--------D 99
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
++ L+ V ++ D NGGT L++A + V+ L+ GAD E + ++ + A
Sbjct: 100 IVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Query: 198 AREGYTDV 205
GY V
Sbjct: 159 VALGYRSV 166
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 264 AGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAG 320
A +G +A +++ +N D+ G TPL+WA G + +V+ LL+ GA+ + G
Sbjct: 27 AAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G TPL A GH+EIV++LLK GA+V+ G TPL +A + E+VE+LL++ +
Sbjct: 46 WGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLL 481
VNA DK G TA I+ +G ++A +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L +GAD+ D G +PL A+ GH + V +LL ADVNA G
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
N + L AA + EIV +L+K GA VN DK +G T + G+ ++ +IL K
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 134
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L GADVNA D +PL AA G+ ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
G +PL A++ H + V +LL ADVNA + ++ + G ++ +L K
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL GA+V+ + TPL +A + E+VE+LL+ +VNA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
G T L +A + EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L ADVNA+ + + L AA G+ EIV +L+K GA VN
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
G TPL A H+EIV++LLK GA+V+
Sbjct: 78 NT-GRTPLHLAAWADHLEIVEVLLKHGADVN 107
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L GA VN D +G TPL A GH+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNAND-YWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 320 GLWAYMPLYSSALAD 334
G PL+ +A AD
Sbjct: 77 GNTGRTPLHLAAWAD 91
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L +VNA D G T L +A G+ EI +LL +GA +N
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
+G + L A H IVE LLK DV+ K KTA +++ GN + ++L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G T L AA G L V L+ GADVNA N +PL AA + ++ LL HGAD+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALL 242
+D G + + G+ D +L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 547 LLTAN-PDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRAR 605
+LTAN D+ G TPL A +LE +++L+ A + A G T LH+A A
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 606 SKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQ 647
IVEV +++ + + +K G+T + I ++N LA+
Sbjct: 92 HLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L +GA +N D G + L A GH IVE LLK DV+ G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
+T ++ A ++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
LL+A + + +++L A + A D G T LH+A IVEV ++N + +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VN 74
Query: 625 RPNKAGETPYSI 636
G TP +
Sbjct: 75 ATGNTGRTPLHL 86
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 198 AREGYTDVCAELLDHGADLEHR-DMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
A +G D E L G +L ++ D G++PL+WAS G +TV LL+ AD +
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
S+L A+ GYT+IV LL+++ +N+ D G TPL++A HV+ V+ LL GA++
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 317 DVAGLWAYMPL 327
Y P+
Sbjct: 129 TTEADSGYTPM 139
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
++ A+ LD L+ L + + D+ G T L++A+ G++ VR L+ GAD +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+ S L+ A+ GYTD+ LL+ D+ D G +PL++A + H V LL +
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR 124
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEI 271
AD+ + + + A GY ++
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKV 150
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+TPL+ A+ E V LLE+ + + L K+ +AL++A GY +I LLL IN
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539
I D +G + L++AV G H VEALL + D+ T + AV G
Sbjct: 97 IYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL+WA G +E V LL+ GA+ + + L +A+ G +T++V LLLE ++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D +G T L A + + LL GA + + SG + + AV G+R + + +
Sbjct: 96 NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
+N D G + LI A G V LL+ D I KER++A+ A G I+ LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 548 LTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607
L + D+ I +G TPLL AV +++ ++ L+ + A +T G T + +A+ +
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 608 TIVEVFIRNPKNNIL-LYRPNKAGETP 633
+ +V +N+IL L++ N P
Sbjct: 149 KVQQVI----ENHILKLFQSNLVPADP 171
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%)
Query: 435 VATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRS 494
+A G ++ E L + VN D+ G T L A G E LL GA +I +
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68
Query: 495 GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDL 554
+S L A GG+ IV LL++ VD++I T + AV +V ++ LL DL
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 555 EIATKDGDTPLLKAV 569
G TP+ AV
Sbjct: 129 TTEADSGYTPMDLAV 143
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
D NGGT L++A + V L+ RGAD+ E + ++P+ A GY V + +H
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA D +PL AA + ++ LL HGAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL A+ GH + V +LL ADVNA + ++ + G ++ +L K
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GAD+ D G +PL A+ H + V +LL ADVNAH
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
N + L AA G+ EIV +L+K GA VN DK +G T + G+ ++ +IL K
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 134
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A + E+VE+LL++ +VNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
DG T L +A G+ EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A H+EIV++LLK GA+V+ TPL +A L E+VE+LL++ +V
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 456 NALDKDGCTALTIACKDGYYEIAVLL 481
NA DK G TA I+ +G ++A +L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA+ + L AA + EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
G+TPL A GH+EIV++LLK GA+V+
Sbjct: 78 N-DGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA D+ G T L +A + EI +LL GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G + L A GH IVE LLK DV+ K KTA +++ GN + ++L N
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 137 DSLQTFLENKRTV-ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLT 195
D ++ + N V A+DR G T L AA L V L+ GADVNA DND +PL
Sbjct: 28 DEVRILMANGADVNANDR--KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLH 85
Query: 196 YAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
AA G+ ++ LL HGAD+ +D G + + G+ D +L
Sbjct: 86 LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN D+ G TPL A H+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDR-KGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 320 GLWAYMPLYSSAL 332
PL+ +AL
Sbjct: 77 DNDGSTPLHLAAL 89
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A + G V L+ DV+ ++ T ++ A + ++ I+++LL D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
DG TPL A +LE +++L+ A + A DK G T I++ ++ + E+ +
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ + G+TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + A D G T LH+A IVEV +++ + + +K G+T + I ++N
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N DR G++ L A H IVE LLK DV+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
T ++ A G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
H + G+TPL A GH+EIV++LLK GA+V+ + T ++ ++ E+L
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 63/102 (61%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G +PL WACR+G +V++L+ GA ++V TPL +A ++V+ LL+YK +
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGD 496
+NA+++ G L AC G ++A L+ +GA ++I ++ G+
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 139
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 182 DVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVAL 241
D+N D+ +SPL +A REG + V L+ GA + + G +PL A+ GH D V
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 242 LLDKNADVNA---HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPL 294
LL AD+NA HGN L +A G ++ LV GA V++ +K YG P+
Sbjct: 91 LLQYKADINAVNEHGNV---PLHYACFWGQDQVAEDLVANGALVSICNK-YGEMPV 142
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 215 DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
DL D G+SPL WA +G + V +L+ + A +N + L AA G+ +IV
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
L++ A +N ++ +G PL +AC G ++ + L+ GA V + + MP+
Sbjct: 91 LLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 439 GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN 498
GN V L + ++N D G + L AC++G + +L+ GA IN+ +R D+
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L A GHR IV+ LL+ D++ + ++ A G + + L+ + I
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 559 KDGDTPLLKA 568
K G+ P+ KA
Sbjct: 136 KYGEMPVDKA 145
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
E N +++ +L+N + DD+G + L +A ++G+ + V L+ RGA +N + + +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74
Query: 193 PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
PL AA G+ D+ +LL + AD+ + G PL +A + G D VA
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ-DQVA 121
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 233 KGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGT 291
+G+ V L LD D+N ++ S L WA G + +V +L+ +GA++NV ++
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG-DD 73
Query: 292 TPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL--ADIFSEPGLATPLTVGL 349
TPL A GH +IV LL+ A+++ +PL+ + D +E +A V +
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 350 YAKWGS 355
K+G
Sbjct: 134 CNKYGE 139
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589
+ ++ A +G ++++L+ + + + DTPL A + + +Q L+ KA I A
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 590 VDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
V++ G+ LH A + E + N L+ NK GE P
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLV---ANGALVSICNKYGEMP 141
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 404 CRKGHVEIVDILLKAGAN-VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
CR+G+ V + L N ++ + ++PL A + VVE+L+ +N +++
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
T L +A G+ +I LL A IN + G+ L +A G + E L+ V
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 523 IPGKERKTAVYTAVEKGNVPILKLL 547
I K + V+K P+ +LL
Sbjct: 133 ICNKYGE----MPVDKAKAPLRELL 153
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 532 VYTAVEKGNVPILKLLL-TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAV 590
++T +GN ++L L DL G +PL A + ++MLI + A+I +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 591 DKRGDTVLHIAMRARSKTIVEVFIR 615
++ DT LH+A + IV+ ++
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQ 93
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 63/102 (61%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G +PL WACR+G +V++L+ GA ++V TPL +A ++V+ LL+YK +
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGD 496
+NA+++ G L AC G ++A L+ +GA ++I ++ G+
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 134
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 182 DVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVAL 241
D+N D+ +SPL +A REG + V L+ GA + + G +PL A+ GH D V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 242 LLDKNADVNA---HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPL 294
LL AD+NA HGN L +A G ++ LV GA V++ +K YG P+
Sbjct: 86 LLQYKADINAVNEHGNV---PLHYACFWGQDQVAEDLVANGALVSICNK-YGEMPV 137
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 215 DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
DL D G+SPL WA +G + V +L+ + A +N + L AA G+ +IV
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
L++ A +N ++ +G PL +AC G ++ + L+ GA V + + MP+
Sbjct: 86 LLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 439 GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN 498
GN V L + ++N D G + L AC++G + +L+ GA IN+ +R D+
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L A GHR IV+ LL+ D++ + ++ A G + + L+ + I
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 559 KDGDTPLLKA 568
K G+ P+ KA
Sbjct: 131 KYGEMPVDKA 140
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
E N +++ +L+N + DD+G + L +A ++G+ + V L+ RGA +N + + +
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 69
Query: 193 PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
PL AA G+ D+ +LL + AD+ + G PL +A + G D VA
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ-DQVA 116
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 233 KGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGT 291
+G+ V L LD D+N ++ S L WA G + +V +L+ +GA++NV ++
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG-DD 68
Query: 292 TPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL--ADIFSEPGLATPLTVGL 349
TPL A GH +IV LL+ A+++ +PL+ + D +E +A V +
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 350 YAKWGS 355
K+G
Sbjct: 129 CNKYGE 134
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589
+ ++ A +G ++++L+ + + + DTPL A + + +Q L+ KA I A
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 590 VDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
V++ G+ LH A + E + N L+ NK GE P
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLV---ANGALVSICNKYGEMP 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 404 CRKGHVEIVDILLKAGAN-VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
CR+G+ V + L N ++ + ++PL A + VVE+L+ +N +++
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
T L +A G+ +I LL A IN + G+ L +A G + E L+ V
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 523 IPGKERKTAVYTAVEKGNVPILKLL 547
I K + V+K P+ +LL
Sbjct: 128 ICNKYGE----MPVDKAKAPLRELL 148
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 532 VYTAVEKGNVPILKLLL-TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAV 590
++T +GN ++L L DL G +PL A + ++MLI + A+I +
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 591 DKRGDTVLHIAMRARSKTIVEVFIR 615
++ DT LH+A + IV+ ++
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQ 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A + GH E V LL GA+V+ TPL +A E+V+LLL +V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQ 491
NA KDG T +A K+G++EI LL GA +N +
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 55/96 (57%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+G T L AA+ G V++L+++GADVNA D +PL AA+ G+ ++ LL GAD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
+ R G +P A GH + V LL K ADVNA
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G +PL A+ GH + V LL K ADVNA + L AA G+ EIV LL+ KGA V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
N K G TP A + GH EIV +L GA+V+
Sbjct: 69 NARSK-DGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 50/92 (54%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL A E V+ LL +VNA KDG T L +A K+G+ EI LLL GA +N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
+ + G++ A K GH IV+ L K DV+
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552
+ G++ L +A K GH V+ LL K DV+ K+ T ++ A + G+ I+KLLL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589
D+ +KDG+TP A K + E +++L K A + A
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%)
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
KDG T L A K+G+ E LL+ GA +N + + G++ L A K GH IV+ LL K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDL 554
DV+ K+ T + A + G+ I+KLL D+
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 526 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
K+ T ++ A + G+ +K LL+ D+ +KDG+TPL A K + E +++L+ K A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ A K G+T H+A + IV++
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
R +G T L AA+ G V+ L+ +GADVNA D +P A + G+ ++ L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Query: 213 GADLEHRDMG 222
GAD+ R G
Sbjct: 98 GADVNARSWG 107
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 557 ATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+KDG+TPL A K + E ++ L+ K A + A K G+T LH+A + IV++ +
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G TPL A + GH E V LL GA+V+ PL+ +A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA 50
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 146 KRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDV 205
K+ + +D D A++ + + +R++ A +N ++N +PL A ++
Sbjct: 1 KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
Query: 206 CAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD-----------KNADVNAHGN 254
LL G D E RD G +PL A +G +V +L K + N H
Sbjct: 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 255 YHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
H++S+ GY IV LLV GA VN + G T L A + ++V +LLK GA
Sbjct: 121 LHLASI-----HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 315 NVDVAGLWAYMP 326
+V+ Y P
Sbjct: 176 DVNRVTYQGYSP 187
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL +A + N E+ E LL + D G T L +AC+ G +L S ++
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 491 Q------DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI--PGKERKTAVYTAVEKGNVP 542
+ +G + L A G+ GIVE L+ DV+ P R TA++ AV+ N
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR-TALHLAVDLQNPD 165
Query: 543 ILKLLLTANPDLEIATKDGDTP-----------LLKAVKTRNLEAIQMLIDKK 584
++ LLL D+ T G +P + + + LE +QML + +
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY--KPNV 455
TPL A EI + LL AG + ++ TPL +A V +L + P++
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 456 NALDK----DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH-AVKGGHRGI 510
+++ K +G T L +A GY I LL++ GA +N Q+ +H AV + +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 511 VEALLKKYVDVD 522
V LLK DV+
Sbjct: 167 VSLLLKCGADVN 178
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Query: 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
A++N Q+ + L AV I EALL D ++ T ++ A E+G + +
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 546 LLLTA--NPDLEIATK----DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDK-RGDTVL 598
+L + P L K +G T L A L +++L+ A + A + G T L
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 599 HIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
H+A+ ++ +V + ++ + + R G +PY +
Sbjct: 156 HLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQL 190
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNAED +PL AA + ++ LL +GAD+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
D G +PL + GH + V +LL ADVNA + ++ + G ++ +L K
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ TPL +A + + E+VE+LL+ +VNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
G T L + G+ EI +LL GA +N QD+ G + ++ G+ + E L K
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADVNA ++ L AA + EIV +L+K GA VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ G TPL GH+EIV++LLK GA+V+
Sbjct: 78 AI-GETPLHLVAMYGHLEIVEVLLKHGADVN 107
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPL-LVATLGNFTEVVELLLEYKPN 454
G TPL A H+EIV++LLK GA+V+ TPL LVA G+ E+VE+LL++ +
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHL-EIVEVLLKHGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLL 481
VNA DK G TA I+ +G ++A +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ D G +PL A+ H + V +LL A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
DVNA + L A G+ EIV +L+K GA VN DK +G T + G+ ++ +
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAE 130
Query: 308 ILLK 311
IL K
Sbjct: 131 ILQK 134
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA DK G T L +A + + EI +LL +GA +N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G++ L GH IVE LLK DV+ K KTA +++ GN + ++L N
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA VN DKV G TPL A H+EIV++LLK GA+V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 320 GLWAYMPLYSSAL 332
PL+ A+
Sbjct: 77 DAIGETPLHLVAM 89
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ K G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
A + A+D G+T LH+ IVEV +++ + + +K G+T + I ++N
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNED 127
Query: 645 LAQ 647
LA+
Sbjct: 128 LAE 130
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N V + D G T L AA L V L+ GADVNA D +PL
Sbjct: 28 DEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHL 86
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
A G+ ++ LL HGAD+ +D G + + G+ D +L
Sbjct: 87 VAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D+ G + L A H IVE LLK DV+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
+T ++ G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 42/225 (18%)
Query: 396 GTTPLVWACRKGHV----EIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
G TPL A +G++ +V++ + G +D+ TPL +A + VV LL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 452 KPNVNALDKDGCTALTIACK--------------------------DGYYEIAV------ 479
+ ALD+ G TA +AC+ DG + V
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 480 -----LLLNSGAYINIQD-RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
LLL GA I+ D +SG S LIHAV+ +V+ LL+ +V+ +A++
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 188
Query: 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578
+A +G +P+++ L+ + D + DTPL+ A R ++ ++
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGA----DVNAEDNDNWSPLTYAAREGYTDVCAEL 209
D +G TA A + + +R L+ A D+ A + D + L A + L
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 210 LDHGADLEHRDM-GGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGY 268
L+ GAD++ D+ G SPL+ A V LLL A+VNA S+L A+GRG
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195
Query: 269 TEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+V LV+ GA ++ + + TPL+ A + ++DIL
Sbjct: 196 LPLVRTLVRSGADSSLKN-CHNDTPLMVARSR---RVIDIL 232
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 8/186 (4%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTR----GADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
D++G T L A +G L V LV G +++ +N +PL A V L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA----DVNAHGNYHISSLIWAAG 265
+ GA D G + A + LLD A D+ A +++L A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 266 RGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYM 325
E V LL+++GA ++ D G +PL+ A + +V +LL+ GANV+
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 326 PLYSSA 331
L+S++
Sbjct: 186 ALHSAS 191
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 530 TAVYTAVEKGNVP----ILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
T ++ AV +GN+P ++ L +L+I TPL AV T +++L+ A
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVFI 614
A+D+ G T H+A RS T + +
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALL 99
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
+++Q LE + +G + L+ A + LS V+ L+ GA+VNA+ S L
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYK 233
A+ G + L+ GAD ++ +PLM A +
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 557 ATKDGDTPLLKAVKTRNLEAIQMLID----KKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
A +DGDTPL AV NL A+ L++ ++ + T LH+A+ ++V +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 613 FIRNPKNNILLYRPNKAGETPYSIDMNNQKS 643
+ AG +P ++D + Q +
Sbjct: 65 LV-------------TAGASPMALDRHGQTA 82
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNW---SPLTYAAREGYTDVCAELLDHGA 214
G L+ AA+ G+ VR L+ GA +W SPL AA+ G+ LL G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT----DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 215 DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
+ R +PL A+ +GH + V +LL ADVNA +++L WA + E+V L
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
L+K GA V+ K + T + G+ ++ +IL
Sbjct: 119 LIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL 152
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L AAR G D L+ +GA D G SPL A+ GH T +LL +A
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ L AA G+ IV +L+K GA VN D + T L WA H E+V++L+K G
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLIKYG 123
Query: 314 ANV 316
A+V
Sbjct: 124 ADV 126
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G + L AAQ G S L+ G +A + +PL AA EG+ ++ LL HGAD+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
+DM + L WA+ H + V LL+ ADV+ +
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF 132
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GT+PL A + GH ++LL+AG + D TPL +A +VE+LL++ +V
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
NA D TAL A + + E+ LL+ GA ++ Q + + ++ G+ + E L
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA L L A G+F+ E+LL + +A
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDART 64
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
K T L +A +G+ I +LL GA +N +D + L A + H+ +VE L+K
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLL 547
DV K KTA +++ GN + ++L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G + L +A + G++ +LL +G + + + + L A GH IVE LLK DV
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATK 559
+ + TA++ A E + +++LL+ D+ +K
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 42/189 (22%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L+ AA G + V +L+ GA GT+PL A + GH ++LL+AG + D
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
PL+ +A G A + V L + G D
Sbjct: 64 TKVDRTPLHMAA------SEGHANIVEVLL-----------------------KHGAD-- 92
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
+L + +H WA H E+V++L+K GA+V +C T ++
Sbjct: 93 VNAKDMLKMTALH---------WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143
Query: 440 NFTEVVELL 448
++ E+L
Sbjct: 144 GNEDLAEIL 152
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ A S L AA G+ +L++ G +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
KV TPL A +GH IV++LLK GA+V+ + L+
Sbjct: 65 KV-DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 532 VYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVD 591
++ A + G+ ++LL A + TK TPL A + +++L+ A + A D
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 592 KRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQ 647
T LH A + +VE+ I+ + ++ +K +T + I ++N LA+
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAE 150
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDND--NWSPLTYAAREGYTDVCAELLDHGADLEH 218
L+ AA+ G + V++L T + VN D + +PL +AA V LL HGAD+
Sbjct: 16 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
+D GG PL A GH + LL+ A VN + + L AA +G EI LL++
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
GA ++ G TPL + G +I D+L A +D A
Sbjct: 135 GADPTKKNR-DGNTPLDLV-KDGDTDIQDLLRGDAALLDAA 173
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 40/181 (22%)
Query: 391 MHLSYGTTP----LVWACRKGHVEIVDIL--LKAGANVDVAGLYCWTPLLVATLGNFTEV 444
M +S G + L+ A + G VE V L +++ D+ G TPL A N V
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSV 61
Query: 445 VELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVK 504
VE LL++ +V+A DK G L AC G+YE+A LL+ GA +N+ D
Sbjct: 62 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD------------ 109
Query: 505 GGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTP 564
L K+ T ++ A KG I KLLL D +DG+TP
Sbjct: 110 ----------LWKF-----------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 148
Query: 565 L 565
L
Sbjct: 149 L 149
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ L +AAG +V L++ GA V+ DK G PL AC GH E+ ++L+K GA V+
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVVN 106
Query: 318 VAGLWAYMPLYSSA 331
VA LW + PL+ +A
Sbjct: 107 VADLWKFTPLHEAA 120
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G PL AC GH E+ ++L+K GA V+VA L+ +TPL A E+ +LLL++ +
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
++DG T L + KDG +I LL A ++
Sbjct: 139 TKKNRDGNTPLDLV-KDGDTDIQDLLRGDAALLD 171
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEH 218
T L FAA ++S V L+ GADV+A+D PL A G+ +V L+ HGA +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D+ ++PL A+ KG + LLL AD
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D G L A G LV GA VN D ++PL AA +G ++C LL H
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 213 GADLEHRDMGGWSPL 227
GAD ++ G +PL
Sbjct: 135 GADPTKKNRDGNTPL 149
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 488 INIQDRSG-DSNLIHAVKGGHR-GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D G S +H G +R +VE LL+ DV K ++ A G+ + +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 546 LLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598
LL+ + +A TPL +A E ++L+ A T ++ G+T L
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 4/198 (2%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
+P+ A GH + L+ G V++ +PL A LG V++LL++ VN
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH-AVKGGHRGIVEALLK 516
+ D T L AC G ++ LLL GA ++Q S ++ IH A + GH V +L+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGA--SVQPESDLASPIHEAARRGHVECVNSLIA 178
Query: 517 KYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEA 576
++D T +Y A E +K LL + D+ K D+PL V+T + E
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEEL 237
Query: 577 IQMLIDKKAKITAVDKRG 594
+L+D A A + G
Sbjct: 238 ACLLMDFGADTQAKNAEG 255
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEH 218
+ + AA G +R L+++G VN D+ SPL A G+ LL HGA +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
+PL A G D V LLL A V + S + AA RG+ E V L+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAY 179
Query: 279 GAKVNVGDKV-YGTTPLVWACRKGHVEIVDILLKAGANVD 317
G N+ K+ + TPL AC V LL++GA+V+
Sbjct: 180 GG--NIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 43/239 (17%)
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
WSP+ A+ GH ++ L+ + VN H+S L A G+ V +L+K GA+VN
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 284 VGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLAT 343
G TPL AC G + V++LL+ GA+V E LA+
Sbjct: 120 -GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-------------------PESDLAS 159
Query: 344 PLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWA 403
P + E + + V+ + + + HL TPL A
Sbjct: 160 P-------------------IHEAARRGHVECVNSLIAYGGNIDHKISHLG---TPLYLA 197
Query: 404 CRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
C V LL++GA+V+ G +PL E+ LL+++ + A + +G
Sbjct: 198 CENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE- 217
+ L A G LS V+ L+ GA VN D +PL A G D LL HGA ++
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE-IVALLV 276
D+ SP+ A+ +GH + V L+ +++ H H+ + ++ A V L+
Sbjct: 154 ESDLA--SPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLL 210
Query: 277 KKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY----SSAL 332
+ GA VN G +PL R E+ +L+ GA+ P+ S L
Sbjct: 211 ESGADVNQGKGQ--DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268
Query: 333 ADIFSE 338
A +F E
Sbjct: 269 AQLFLE 274
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 2/185 (1%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
W+P+ A + + L+ VN + D + L AC G+ +LL GA +N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ L +A G V LL+ V P + + ++ A +G+V + L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 178
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTI 609
+++ TPL A + + ++ L++ A + K D+ LH +R S+ +
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEEL 237
Query: 610 VEVFI 614
+ +
Sbjct: 238 ACLLM 242
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 149 VADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAE 208
+ +D D A++ + + +R++ A +N ++N +PL A ++
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 209 LLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD-----------KNADVNAHGNYHI 257
LL G D E RD G +PL A +G +V +L K + N H H+
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 120
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+S+ GY IV LLV GA VN + G T L A + ++V +LLK GA+V+
Sbjct: 121 ASI-----HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
Query: 318 VAGLWAYMP 326
Y P
Sbjct: 176 RVTYQGYSP 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNS------ 484
TPL +A + N E+ E LL + D G T L +AC+ G +L S
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI--PGKERKTAVYTAVEKGNVP 542
+ + + +G + L A G+ GIVE L+ DV+ P R TA++ AV+ N
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR-TALHLAVDLQNPD 162
Query: 543 ILKLLLTANPDLEIATKDGDTP 564
++ LLL D+ T G +P
Sbjct: 163 LVSLLLKCGADVNRVTYQGYSP 184
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLE--YKPNV 455
TPL A EI + LL AG + ++ TPL +A V +L + P++
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 456 NALDK----DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH-AVKGGHRGI 510
+++ K +G T L +A GY I LL++ GA +N Q+ +H AV + +
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 163
Query: 511 VEALLKKYVDVD 522
V LLK DV+
Sbjct: 164 VSLLLKCGADVN 175
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
A++N Q+ + L AV I EALL D ++ T ++ A E+G + +
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 546 LLLTA--NPDLEIATK----DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDK-RGDTVL 598
+L + P L K +G T L A L +++L+ A + A + G T L
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 152
Query: 599 HIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQE 648
H+A+ ++ +V + ++ + + R G +PY + + + Q+
Sbjct: 153 HLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQ 199
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
Query: 119 MVSLC----YRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVR 174
M++ C T S ED + F+ ++ + D G TAL AA+ + +
Sbjct: 15 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74
Query: 175 ELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYK 233
L+ AD N +DN +PL A V L+ + DL+ R G +PL+ A+
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Query: 234 GHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTP 293
+ L++ +ADVNA + S+L WAA + +L+K GA ++ + TP
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETP 193
Query: 294 LVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
L A R+G E +LL AN D+ +P
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 49/227 (21%)
Query: 421 NVDVAGLYCWTPLLVAT-------LGNFTE-------VVELLLEYKPNVNALDKDGCTAL 466
+V+V G +TPL++A+ GN E + + + + N D+ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 467 TIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGK 526
+A + + A LL + A NIQD G + L AV +G+ + L++
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN--------- 112
Query: 527 ERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586
R T DL+ DG TPL+ A + ++ LI+ A
Sbjct: 113 -RAT----------------------DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Query: 587 ITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
+ AVD G + LH A + V ++N N + N ETP
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETP 193
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT-LQSYIAEDNLDSL 139
+TA++ A K LL A+ D I D+M RT L + ++ D
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANI-------QDNM----GRTPLHAAVSADAQGVF 106
Query: 140 QTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAR 199
Q + N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166
Query: 200 EGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK--NADVNAH 252
D LL +GA+ + ++ +PL A+ +G +T +LLD N D+ H
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 171 SFVRELVTRGADV-NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229
+ + + + +GA + N D + L AAR +D LL+ AD +D G +PL
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 230 ASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
A +L+ A D++A + + LI AA ++ L+ A VN D +
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G + L WA +V+ +LLK GAN D+ PL+ +A
Sbjct: 157 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 198
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 155 DNGGTALMFAAQKGKLSFVRELV--TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
DN G + AA V +++ R D++A +D +PL AAR + +L++
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
AD+ D G S L WA+ + D +LL A+ + N + L AA G E
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 206
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+L+ A ++ D + P A + H +IV +L
Sbjct: 207 KVLLDHFANRDITDHM-DRLPRDIAQERMHHDIVRLL 242
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
+ G TPL A + IL++ A ++D TPL++A ++E L+
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
+VNA+D G +AL A + AV+LL +GA ++Q+ ++ L A + G +
Sbjct: 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
LL + + DI + A E+ + I++LL
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 15/206 (7%)
Query: 396 GTTPLVWA-CRKGHVE-------------IVDILLKAGANVDVAGLYCWTPLLVATLGNF 441
G TPL+ A C G +E I D + + + + T L +A +
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 442 TEVVELLLEYKPNVNALDKDGCTALTIACK-DGYYEIAVLLLNSGAYINIQDRSGDSNLI 500
++ + LLE + N D G T L A D +L+ N ++ + G + LI
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 501 HAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKD 560
A + G++E L+ + DV+ K+A++ A NV +LL + ++
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAK 586
+TPL A + + E ++L+D A
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
Query: 119 MVSLC----YRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVR 174
M++ C T S ED + F+ ++ + D G TAL AA+ + +
Sbjct: 16 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 75
Query: 175 ELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYK 233
L+ AD N +DN +PL A V L+ + DL+ R G +PL+ A+
Sbjct: 76 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135
Query: 234 GHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTP 293
+ L++ +ADVNA + S+L WAA + +L+K GA ++ + TP
Sbjct: 136 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETP 194
Query: 294 LVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
L A R+G E +LL AN D+ +P
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLP 227
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 49/229 (21%)
Query: 419 GANVDVAGLYCWTPLLVAT-------LGNFTE-------VVELLLEYKPNVNALDKDGCT 464
G +V+V G +TPL++A+ GN E + + + + N D+ G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 465 ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIP 524
AL +A + + A LL + A NIQD G + L AV +G+ + L++
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN------- 113
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
R T DL+ DG TPL+ A + ++ LI+
Sbjct: 114 ---RAT----------------------DLDARMHDGTTPLILAARLAVEGMLEDLINSH 148
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
A + AVD G + LH A + V ++N N + N ETP
Sbjct: 149 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETP 194
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT-LQSYIAEDNLDSL 139
+TA++ A K LL A+ D I D+M RT L + ++ D
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANI-------QDNM----GRTPLHAAVSADAQGVF 107
Query: 140 QTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAR 199
Q + N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 108 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 167
Query: 200 EGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK--NADVNAH 252
D LL +GA+ + ++ +PL A+ +G +T +LLD N D+ H
Sbjct: 168 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 222
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 171 SFVRELVTRGADV-NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229
+ + + + +GA + N D + L AAR +D LL+ AD +D G +PL
Sbjct: 38 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 230 ASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
A +L+ A D++A + + LI AA ++ L+ A VN D +
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G + L WA +V+ +LLK GAN D+ PL+ +A
Sbjct: 158 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 199
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 155 DNGGTALMFAAQKGKLSFVRELV--TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
DN G + AA V +++ R D++A +D +PL AAR + +L++
Sbjct: 88 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
AD+ D G S L WA+ + D +LL A+ + N + L AA G E
Sbjct: 148 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 207
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+L+ A ++ D + P A + H +IV +L
Sbjct: 208 KVLLDHFANRDITDHM-DRLPRDIAQERMHHDIVRLL 243
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 20/243 (8%)
Query: 396 GTTPLVWA-CRKGHVE-------------IVDILLKAGANVDVAGLYCWTPLLVATLGNF 441
G TPL+ A C G +E I D + + + + T L +A +
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 442 TEVVELLLEYKPNVNALDKDGCTALTIACK-DGYYEIAVLLLNSGAYINIQDRSGDSNLI 500
++ + LLE + N D G T L A D +L+ N ++ + G + LI
Sbjct: 71 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 130
Query: 501 HAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKD 560
A + G++E L+ + DV+ K+A++ A NV +LL + ++
Sbjct: 131 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 190
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV-----FIR 615
+TPL A + + E ++L+D A D IA IV + +R
Sbjct: 191 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 250
Query: 616 NPK 618
+P+
Sbjct: 251 SPQ 253
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 180 GADVNAEDNDNWSPLTYAA-------------REGYTDVCAELLDHGADLEHR-DMGGWS 225
G DVN D ++PL A+ E V ++ + GA L ++ D G +
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 226 PLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVG 285
L A+ +D LL+ +AD N N + L A + +L++ A ++
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-TDLD 119
Query: 286 DKVY-GTTPLVWACRKGHVEIVDILLKAGANVDV 318
+++ GTTPL+ A R +++ L+ + A+V+
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 153
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDND--NWSPLTYAAREGYTDVCAELLDHGADLEH 218
L+ AA+ G + V++L T + VN D + +PL +AA V LL HGAD+
Sbjct: 12 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
+D GG PL A GH + LL+ A VN + + L AA +G EI LL++
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA ++ G TPL + G +I D+L
Sbjct: 131 GADPTKKNR-DGNTPLDLV-KDGDTDIQDLL 159
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 36/168 (21%)
Query: 400 LVWACRKGHVEIVDIL--LKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
L+ A + G VE V L +++ D+ G TPL A N VVE LL++ +V+A
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
DK G L AC G+YE+A LL+ GA +N+ D L K
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----------------------LWK 108
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+ T ++ A KG I KLLL D +DG+TPL
Sbjct: 109 F-----------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ L +AAG +V L++ GA V+ DK G PL AC GH E+ ++L+K GA V+
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVVN 102
Query: 318 VAGLWAYMPLYSSA 331
VA LW + PL+ +A
Sbjct: 103 VADLWKFTPLHEAA 116
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G PL AC GH E+ ++L+K GA V+VA L+ +TPL A E+ +LLL++ +
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
++DG T L + KDG +I LL A
Sbjct: 135 TKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEH 218
T L FAA ++S V L+ GADV+A+D PL A G+ +V L+ HGA +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D+ ++PL A+ KG + LLL AD
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 219 RDMGGW--SPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLV 276
RD+ G +PL +A+ V LL ADV+A + L A G+ E+ LLV
Sbjct: 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 95
Query: 277 KKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
K GA VNV D ++ TPL A KG EI +LL+ GA+
Sbjct: 96 KHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 397 TTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN 456
+TPL +A V +V+ LL+ GA+V PL A EV ELL+++ VN
Sbjct: 43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 102
Query: 457 ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNL 499
D T L A G YEI LLL GA ++R G++ L
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D G L A G LV GA VN D ++PL AA +G ++C LL H
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 213 GADLEHRDMGGWSPL 227
GAD ++ G +PL
Sbjct: 131 GADPTKKNRDGNTPL 145
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 488 INIQDRSG-DSNLIHAVKGGHR-GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D G S +H G +R +VE LL+ DV K ++ A G+ + +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 546 LLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598
LL+ + +A TPL +A E ++L+ A T ++ G+T L
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 6/213 (2%)
Query: 119 MVSLC----YRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVR 174
M++ C T S ED + F+ ++ + D G TAL AA + +
Sbjct: 15 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAK 74
Query: 175 ELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYK 233
L+ AD N +DN +PL A V L+ + DL+ R G +PL+ A+
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Query: 234 GHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTP 293
+ L++ +ADVNA + S+L WAA + +L+K GA ++ + TP
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETP 193
Query: 294 LVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
L A R+G E +LL AN D+ +P
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 49/227 (21%)
Query: 421 NVDVAGLYCWTPLLVATL-------GNFTE-------VVELLLEYKPNVNALDKDGCTAL 466
+V+V G +TPL++A+ GN E + + + + N D+ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 467 TIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGK 526
+A + A LL + A NIQD G + L AV +G+ + L++
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN--------- 112
Query: 527 ERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586
R T DL+ DG TPL+ A + ++ LI+ A
Sbjct: 113 -RAT----------------------DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Query: 587 ITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
+ AVD G + LH A + V ++N N + N ETP
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETP 193
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 82 TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT-LQSYIAEDNLDSLQ 140
TA++ A K LL A+ D I D+M RT L + ++ D Q
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANI-------QDNM----GRTPLHAAVSADAQGVFQ 107
Query: 141 TFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAARE 200
+ N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 201 GYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK--NADVNAH 252
D LL +GA+ + ++ +PL A+ +G +T +LLD N D+ H
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 155 DNGGTALMFAAQKGKLSFVRELV--TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
DN G + AA V +++ R D++A +D +PL AAR + +L++
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
AD+ D G S L WA+ + D +LL A+ + N + L AA G E
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 206
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+L+ A ++ D + P A + H +IV +L
Sbjct: 207 KVLLDHFANRDITDHM-DRLPRDIAQERMHHDIVRLL 242
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 171 SFVRELVTRGADV-NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229
+ + + + +GA + N D + L AA +D LL+ AD +D G +PL
Sbjct: 37 AVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 230 ASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
A +L+ A D++A + + LI AA ++ L+ A VN D +
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G + L WA +V+ +LLK GAN D+ PL+ +A
Sbjct: 157 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 198
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
+ G TPL A + IL++ A ++D TPL++A ++E L+
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
+VNA+D G +AL A + AV+LL +GA ++Q+ ++ L A + G +
Sbjct: 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
LL + + DI + A E+ + I++LL
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 15/206 (7%)
Query: 396 GTTPLVWA-CRKGHVE-------------IVDILLKAGANVDVAGLYCWTPLLVATLGNF 441
G TPL+ A C G +E I D + + + + T L +A +
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 442 TEVVELLLEYKPNVNALDKDGCTALTIACK-DGYYEIAVLLLNSGAYINIQDRSGDSNLI 500
++ + LLE + N D G T L A D +L+ N ++ + G + LI
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 501 HAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKD 560
A + G++E L+ + DV+ K+A++ A NV +LL + ++
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAK 586
+TPL A + + E ++L+D A
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAED--NDNWSPLTYAAREGYTDVCAELLDHGADLEH 218
L+ AA+ G + V++L T + VN D +PL +AA V LL HGAD+
Sbjct: 14 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
+D GG PL A GH + LL+ A VN + + L AA +G EI LL++
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
GA ++ G TPL + G +I D+L
Sbjct: 133 GADPTKKNR-DGNTPLDLV-KDGDTDIQDLL 161
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 36/168 (21%)
Query: 400 LVWACRKGHVEIVDIL--LKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
L+ A + G VE V L +++ D+ G TPL A N VVE LL++ +V+A
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
DK G L AC G+YE+A LL+ GA +N+ D L K
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----------------------LWK 110
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+ T ++ A KG I KLLL D +DG+TPL
Sbjct: 111 F-----------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ L +AAG +V L++ GA V+ DK G PL AC GH E+ ++L+K GA V+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVVN 104
Query: 318 VAGLWAYMPLYSSA 331
VA LW + PL+ +A
Sbjct: 105 VADLWKFTPLHEAA 118
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G PL AC GH E+ ++L+K GA V+VA L+ +TPL A E+ +LLL++ +
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
++DG T L + KDG +I LL A
Sbjct: 137 TKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 166
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEH 218
T L FAA ++S V L+ GADV+A+D PL A G+ +V L+ HGA +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D+ ++PL A+ KG + LLL AD
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 219 RDMGGW--SPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLV 276
RD+ G +PL +A+ V LL ADV+A + L A G+ E+ LLV
Sbjct: 38 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 97
Query: 277 KKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
K GA VNV D ++ TPL A KG EI +LL+ GA+
Sbjct: 98 KHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 397 TTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN 456
+TPL +A V +V+ LL+ GA+V PL A EV ELL+++ VN
Sbjct: 45 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 104
Query: 457 ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNL 499
D T L A G YEI LLL GA ++R G++ L
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D G L A G LV GA VN D ++PL AA +G ++C LL H
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 213 GADLEHRDMGGWSPL 227
GAD ++ G +PL
Sbjct: 133 GADPTKKNRDGNTPL 147
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 488 INIQDRSG-DSNLIHAVKGGHR-GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
+N +D G S +H G +R +VE LL+ DV K ++ A G+ + +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 546 LLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598
LL+ + +A TPL +A E ++L+ A T ++ G+T L
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 4/198 (2%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
+P+ A GH + L+ G V++ +PL A LG V++LL++ VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH-AVKGGHRGIVEALLK 516
+ D T L AC G ++ LLL GA ++Q S ++ IH A + GH V +L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGA--SVQPESDLASPIHEAARRGHVECVNSLIA 122
Query: 517 KYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEA 576
++D T +Y A E +K LL + D+ K D+PL +T + E
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEEL 181
Query: 577 IQMLIDKKAKITAVDKRG 594
+L+D A A + G
Sbjct: 182 ACLLMDFGADTQAKNAEG 199
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 164 AAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
AA G +R L+++G VN D+ SPL A G+ LL HGA +
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
+PL A G D V LLL A V + S + AA RG+ E V L+ G N
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGG--N 126
Query: 284 VGDKV-YGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ K+ + TPL AC V LL++GA+V+
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 43/242 (17%)
Query: 221 MGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
M WSP+ A+ GH ++ L+ + VN H+S L A G+ V +L+K GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 281 KVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPG 340
+VN G TPL AC G + V++LL+ GA+V E
Sbjct: 61 QVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-------------------PESD 100
Query: 341 LATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPL 400
LA+P + E + + V+ + + + HL TPL
Sbjct: 101 LASP-------------------IHEAARRGHVECVNSLIAYGGNIDHKISHLG---TPL 138
Query: 401 VWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDK 460
AC V LL++GA+V+ G +PL E+ LL+++ + A +
Sbjct: 139 YLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
Query: 461 DG 462
+G
Sbjct: 198 EG 199
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 17/225 (7%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE- 217
+ L A G LS V+ L+ GA VN D +PL A G D LL HGA ++
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE-IVALLV 276
D+ SP+ A+ +GH + V L+ +++ H H+ + ++ A V L+
Sbjct: 98 ESDLA--SPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLL 154
Query: 277 KKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY----SSAL 332
+ GA VN G +PL R E+ +L+ GA+ P+ S L
Sbjct: 155 ESGADVNQGKG--QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 212
Query: 333 ADIFSE----PGLATPLTVGLYAKWGSGKSFLLPK--LKEEMKHF 371
A +F E P L + + +G + + K L E++K F
Sbjct: 213 AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQF 257
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 2/185 (1%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
W+P+ A + + L+ VN + D + L AC G+ +LL GA +N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ L +A G V LL+ V P + + ++ A +G+V + L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 122
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTI 609
+++ TPL A + + ++ L++ A + K D+ LH R S+ +
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEEL 181
Query: 610 VEVFI 614
+ +
Sbjct: 182 ACLLM 186
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
D + + GT L A + + + V++L+ GADVN + SPL AR ++ L+
Sbjct: 128 DHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLM 186
Query: 211 DHGADLEHRDMGGWSPL 227
D GAD + ++ G P+
Sbjct: 187 DFGADTQAKNAEGKRPV 203
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 2/189 (1%)
Query: 139 LQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAA 198
+ F+ ++ + D G TAL AA+ + + L+ AD N +DN +PL A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 199 REGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHI 257
V L+ + DL+ R G +PL+ A+ + L++ +ADVNA +
Sbjct: 67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
S+L WAA + +L+K GA ++ + TPL A R+G E +LL AN D
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD 185
Query: 318 VAGLWAYMP 326
+ +P
Sbjct: 186 ITDHMDRLP 194
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQ 140
+TA++ A K LL A+ D I D+M L + ++ D Q
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI-------QDNM---GRTPLHAAVSADAQGVFQ 75
Query: 141 TFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAARE 200
+ N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 201 GYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK--NADVNAHGNYHIS 258
D LL +GA+ + ++ +PL A+ +G +T +LLD N D+ H +
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195
Query: 259 SLIWAAGRGYTEIVALL 275
+ A R + +IV LL
Sbjct: 196 DI--AQERMHHDIVRLL 210
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 35/178 (19%)
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N D+ G TAL +A + + A LL + A NIQD G + L AV +G+ + L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
+ R T DL+ DG TPL+ A +
Sbjct: 79 RN----------RAT----------------------DLDARMHDGTTPLILAARLAVEG 106
Query: 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
++ LI+ A + AVD G + LH A + V ++N N + N ETP
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETP 161
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 171 SFVRELVTRGADV-NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229
+ + + + +GA + N D + L AAR +D LL+ AD +D G +PL
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 230 ASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
A +L+ A D++A + + LI AA ++ L+ A VN D +
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G + L WA +V+ +LLK GAN D+ PL+ +A
Sbjct: 125 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 155 DNGGTALMFAAQKGKLSFVRELV--TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
DN G + AA V +++ R D++A +D +PL AAR + +L++
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
AD+ D G S L WA+ + D +LL A+ + N + L AA G E
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 174
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+L+ A ++ D + P A + H +IV +L
Sbjct: 175 KVLLDHFANRDITDHM-DRLPRDIAQERMHHDIVRLL 210
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 6/194 (3%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACK-DGYYEIAVLLLNSGAYIN 489
T L +A + ++ + LLE + N D G T L A D +L+ N ++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ G + LI A + G++E L+ + DV+ K+A++ A NV +LL
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTI 609
+ ++ +TPL A + + E ++L+D A D IA I
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 206
Query: 610 VEV-----FIRNPK 618
V + +R+P+
Sbjct: 207 VRLLDEYNLVRSPQ 220
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 12/214 (5%)
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSS 330
+++ + +GA ++ G T L A R + LL+A A+ ++ PL+++
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 331 ALAD---IFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLF 387
AD +F L L A+ G + L+ + +G+ S
Sbjct: 66 VSADAQGVFQI--LIRNRATDLDARMHDGTTPLILAAR-----LAVEGMLEDLINSHADV 118
Query: 388 VLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVEL 447
V L G + L WA +V+ +LLK GAN D+ TPL +A E ++
Sbjct: 119 NAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 448 LLEYKPNVNALDKDGCTALTIACKDGYYEIAVLL 481
LL++ N + D IA + +++I LL
Sbjct: 177 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GTTPL+ A R +++ L+ + A+V+ + L A N + +LL+ N
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
+ + T L +A ++G YE A +LL+ A +I D
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 2/189 (1%)
Query: 139 LQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAA 198
+ F+ ++ + D G TAL AA+ + + L+ AD +DN +PL A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 199 REGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHI 257
V LL + DL+ R G +PL+ A+ + L++ +ADVNA +
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
S+L WAA + +L+K GA ++ + TPL A R+G E +LL AN D
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNN-KEETPLFLAAREGSYETAKVLLDHFANRD 182
Query: 318 VAGLWAYMP 326
+ +P
Sbjct: 183 ITDHMDRLP 191
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT-LQSYIAEDNLDSL 139
+TA++ A K LL A+ D I D+M RT L + ++ D
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXI-------QDNM----GRTPLHAAVSADAQGVF 71
Query: 140 QTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAR 199
Q L N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 72 QILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAA 131
Query: 200 EGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK--NADVNAH 252
D LL +GA+ + ++ +PL A+ +G +T +LLD N D+ H
Sbjct: 132 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDH 186
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 171 SFVRELVTRGADV-NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229
S + + + +GA + N D + L AAR +D LL+ AD +D G +PL
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 230 ASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
A +LL A D++A + + LI AA ++ L+ A VN D +
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G + L WA +V+ +LLK GAN D+ PL+ +A
Sbjct: 122 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 163
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Query: 477 IAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAV 536
I+ + + N DR+G++ L A + + LL+ D I +T ++ AV
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 537 EKGNVPILKLLLTANP-DLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGD 595
+ ++LL DL+ DG TPL+ A + ++ LI+ A + AVD G
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 596 TVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
+ LH A + V ++N N + N ETP
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDM---QNNKEETP 158
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 155 DNGGTALMFAAQKGKLSFVRELV--TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
DN G + AA V +++ R D++A +D +PL AAR + +L++
Sbjct: 52 DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
AD+ D G S L WA+ + D +LL A+ + N + L AA G E
Sbjct: 112 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETA 171
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+L+ A ++ D + P A + H +IV +L
Sbjct: 172 KVLLDHFANRDITDHM-DRLPRDIAQERMHHDIVRLL 207
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A + ILL+ A ++D TPL++A ++E L+ +
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD 114
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VNA+D G +AL A + AV+LL +GA ++Q+ ++ L A + G + L
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 174
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
L + + DI + A E+ + I++LL
Sbjct: 175 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACK-DGYYEIAVLLLNSGAYIN 489
T L +A + ++ + LLE + D G T L A D +LL N ++
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ G + LI A + G++E L+ + DV+ K+A++ A NV +LL
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 143
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
+ ++ +TPL A + + E ++L+D A
Sbjct: 144 NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
M+A + G L V++ V +G DVN PL YAA G ++ LL GAD+ D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 221 MGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSL 260
+PL+ A Y+GH V LLL K AD G +++L
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
MWA G D V + K DVN L +AA G EI+ L+ KGA +N D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAG 320
K + TPL+ A +GHV V +LL GA+ V G
Sbjct: 66 K-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
+A + G D + + G D+ GG PL +A+ G + + LL K AD+NA
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNV 284
+HI+ L+ A G+ V LL+ KGA V
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 122 LCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGG-TALMFAAQKGKLSFVRELVTRG 180
+C + + +LD ++ ++ V +R GG L +AA G+L + L+ +G
Sbjct: 1 MCDKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLLLKG 58
Query: 181 ADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
AD+NA D + +PL A EG+ LL GAD
Sbjct: 59 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544
G +N G L +A G I+E LL K D++ P K T + +AV +G+V +
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 84
Query: 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581
KLLL+ D + DG L A++ + +AI+ L+
Sbjct: 85 KLLLSKGADKTVKGPDG----LTALEATDNQAIKALL 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 393 LSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
L G PL +A G +EI++ LL GA+++ + TPLL A V+LLL
Sbjct: 32 LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91
Query: 453 PNVNALDKDGCTAL 466
+ DG TAL
Sbjct: 92 ADKTVKGPDGLTAL 105
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
D + A+K G V+ + K DV+ + + ++ A + G + IL+ LL D+
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 556 IATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598
K TPLL AV ++ +++L+ K A T G T L
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
+WA + G ++ V + G +V+ PL A E++E LL ++NA D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
K T L A +G+ LLL+ GA ++ G
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
M+A + G L V++ V +G DVN PL YAA G ++ LL GAD+ D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 221 MGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
+PL+ A Y+GH V LLL K AD G
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
MWA G D V + K DVN L +AA G EI+ L+ KGA +N D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAG 320
K + TPL+ A +GHV V +LL GA+ V G
Sbjct: 71 K-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
+A + G D + + G D+ GG PL +A+ G + + LL K AD+NA
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNV 284
+HI+ L+ A G+ V LL+ KGA V
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 121 SLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGG-TALMFAAQKGKLSFVRELVTR 179
S+C + + +LD ++ ++ V +R GG L +AA G+L + L+ +
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
GAD+NA D + +PL A EG+ LL GAD
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544
G +N G L +A G I+E LL K D++ P K T + +AV +G+V +
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89
Query: 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581
KLLL+ D + DG L A + + +AI+ L+
Sbjct: 90 KLLLSKGADKTVKGPDG----LTAFEATDNQAIKALL 122
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 393 LSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
L G PL +A G +EI++ LL GA+++ + TPLL A V+LLL
Sbjct: 37 LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Query: 453 PNVNALDKDGCTAL 466
+ DG TA
Sbjct: 97 ADKTVKGPDGLTAF 110
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
D + A+K G V+ + K DV+ + + ++ A + G + IL+ LL D+
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 556 IATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVE 611
K TPLL AV ++ +++L+ K A T G T K +++
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
+WA + G ++ V + G +V+ PL A E++E LL ++NA D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
K T L A +G+ LLL+ GA ++ G
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADVNA+D D ++PL AAREG+ ++ LL GAD+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 218 HRDMGGWSPLMWASYKGHTDTVALL 242
+D G + + G+ D +L
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
L+ AA G + V +L+ GA VN DK G TPL A R+GH+EIV++LLKAGA+V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 220 DMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG 279
D+G L+ A+ G D V +L+ ADVNA + L AA G+ EIV +L+K G
Sbjct: 1 DLG--KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 280 AKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
A VN DK +G T + G+ ++ +IL KA
Sbjct: 59 ADVNAQDK-FGKTAFDISIDNGNEDLAEILQKA 90
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +VNA DKDG T L +A ++G+ EI +LL +GA +N QD
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 493 RSGDSNLIHAVKGGHRGIVEALLK 516
+ G + ++ G+ + E L K
Sbjct: 66 KFGKTAFDISIDNGNEDLAEILQK 89
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V+ +TPL +A E+VE+LL+ +VNA D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 460 KDGCTALTIACKDGYYEIAVLL 481
K G TA I+ +G ++A +L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D L AAR G D L+ +GAD+ +D G++PL A+ +GH + V +LL AD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVK 277
VNA + ++ + G ++ +L K
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
G TPL A R+GH+EIV++LLKAGA+V+ + T ++ ++ E+L
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA +N +D+ G + L A + GH IVE LLK DV+ K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 529 KTAVYTAVEKGNVPILKLLLTA 550
KTA +++ GN + ++L A
Sbjct: 69 KTAFDISIDNGNEDLAEILQKA 90
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
LL+A + + +++L+ A + A DK G T LH+A R IVEV ++ + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VN 62
Query: 625 RPNKAGETPYSIDMNNQKSILAQ 647
+K G+T + I ++N LA+
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAE 85
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 532 VYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVD 591
+ A G +++L+ D+ KDG TPL A + +LE +++L+ A + A D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 592 KRGDTVLHIAMRARSKTIVEVF 613
K G T I++ ++ + E+
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D +G T L AA++G L V L+ GADVNA+D + + G D+ AE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL-AEILQK 89
Query: 213 GA 214
A
Sbjct: 90 AA 91
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 19/217 (8%)
Query: 416 LKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYY 475
+ AGA+V+ TPL +A L +V L + + +K +AL A + +
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDF 212
Query: 476 EIAVLLLNSGAY---INIQDRSGDSNL-IHAVKGGHRGIVEA--LLKKYVDVDIPGKERK 529
V LNS I DR+G + L I A G + A L++K VD G RK
Sbjct: 213 GXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 272
Query: 530 --------TAVYTAVEKGNVPILKLLLT---ANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578
TA++ A + N PI+K L+ +N D + +DG TP+ A + +E +
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQ--DEDGKTPIXLAAQEGRIEVVX 330
Query: 579 MLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
LI + A + AVD T +A IV++F R
Sbjct: 331 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 157 GGTALMFAAQKGKLSFVRELV-TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
G TAL +AAQ V+ LV +G++ + +D D +P+ AA+EG +V L+ GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALL 242
+E D + A H + V +
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 49/194 (25%)
Query: 173 VRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD----------------- 215
+E + GADVNA D D +PL A + A L GAD
Sbjct: 149 AKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA 208
Query: 216 -------------------LEHRDMGGWSPLMWASYKGHTDTVA---LLLDKNADVNAHG 253
+E D G + L ++ D VA LL++K A V+ G
Sbjct: 209 NRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Query: 254 NYHISS--------LIWAAGRGYTEIVALLV-KKGAKVNVGDKVYGTTPLVWACRKGHVE 304
S L +AA IV LV +KG+ + D+ G TP+ A ++G +E
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDED-GKTPIXLAAQEGRIE 327
Query: 305 IVDILLKAGANVDV 318
+V L++ GA+V+
Sbjct: 328 VVXYLIQQGASVEA 341
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
G TP+ A ++G +E+V L++ GA+V+ T +A N +V++ +P
Sbjct: 313 GKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 125 RTLQSYIAE-DNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADV 183
RT Y A+ N ++ + K + D +D++G T + AAQ+G++ V L+ +GA V
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 184 NAED 187
A D
Sbjct: 340 EAVD 343
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 2/174 (1%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL-DH 212
D G T+L AA+ + + L+ GAD N++DN +PL A V LL +
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
+L R G +PL+ A+ V L+ +AD+NA N ++L WAA TE V
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV 167
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
+L+ A + D TPL A R+G E LL AN ++ +P
Sbjct: 168 NILLMHHANRDAQDD-KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLP 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
L + +A D + Q L N+ T + R +G T L+ AA+ V +L+T AD+NA
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 147
Query: 187 DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN 246
DN + L +AA T+ LL H A+ + +D +PL A+ +G + LLD
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 207
Query: 247 AD 248
A+
Sbjct: 208 AN 209
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 443 EVVELLLEYKPNVNA-LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH 501
+V+ LL +NA +DK G T+L +A + + A LL++GA N QD +G + L
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 502 AVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL-----------KLLLTA 550
AV G+ + LL+ R T + + G P++ + L+TA
Sbjct: 91 AVAADAMGVFQILLRN----------RATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIV 610
+ D+ A G T L A N EA+ +L+ A A D + +T L +A R S
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEAS 200
Query: 611 EVFIRNPKN 619
+ + N N
Sbjct: 201 KALLDNFAN 209
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GTTPL+ A R +V+ L+ A A+++ A T L A N TE V +LL + N
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
+A D T L +A ++G YE + LL++ A I D
Sbjct: 178 DAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 214
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 81/192 (42%), Gaps = 18/192 (9%)
Query: 157 GGTALMFAAQKG---------------KLSFVRELVTRGADVNAE-DNDNWSPLTYAARE 200
G T LM AA +G + +L+ +GA++NA D + L AAR
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 201 GYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA-DVNAHGNYHISS 259
D LLD GAD +D G +PL A +LL A ++NA + +
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
LI AA +V L+ A +N D G T L WA + E V+ILL AN D
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHHANRDAQ 180
Query: 320 GLWAYMPLYSSA 331
PL+ +A
Sbjct: 181 DDKDETPLFLAA 192
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELV-TRGADVNAEDNDNWSPLTYAAREGYTDVCAE 208
A+ +D+ G T L A + + L+ R ++NA +D +PL AAR + +
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 209 LLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGY 268
L+ AD+ D G + L WA+ +T+ V +LL +A+ +A + + L AA G
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 196
Query: 269 TEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
E L+ A + D + P A + H +IV +L
Sbjct: 197 YEASKALLDNFANREITDHM-DRLPRDVASERLHHDIVRLL 236
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 415 LLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP-NVNALDKDGCTALTIACKDG 473
LL AGA+ + TPL A + V ++LL + N+NA DG T L +A +
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 474 YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
+ L+ + A IN D SG + L A + V LL + + D + +T ++
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 534 TAVEKGNVPILKLLLTANPDLEI 556
A +G+ K LL + EI
Sbjct: 190 LAAREGSYEASKALLDNFANREI 212
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A + + ILL+ A N++ TPL++A +VE L+ +
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+NA D G TAL A E +LL A + QD ++ L A + G +AL
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
L + + +I + A E+ + I++LL
Sbjct: 204 LDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G T L A+ KG + V L+ G+D N +D+ W+PL A G+ V LL H A +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
SPL A+ GH D V LLL A NA
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 194 LTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG 253
L A+ +G LL +G+D +D GW+PL A GH V LLL A VN G
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVW 296
+ S L AA G+ +IV LL+ GA N + ++G P+ +
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN-IFGLRPVDY 115
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G T L A KG + V+ LL+ G++ +V WTPL A +VVELLL++K V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
N + L A K+G+ +I LLL+ GA N
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G + L AS KG +V LL +D N + + L A G+ ++V LL++ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
N +PL A + GHV+IV +LL GA+ + ++ P+
Sbjct: 70 NT-TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G T L IA G LL +G+ N++D +G + L A GH +VE LL+ V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ G + + ++ A + G+V I+KLLL+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
T L +A++ VE LL+ + N D G T L AC G+ ++ LLL A +N
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALL 515
DS L A K GH IV+ LL
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL AC GH+++V++LL+ A V+ G +PL A ++V+LLL Y +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 456 NALD 459
NA++
Sbjct: 103 NAVN 106
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 256 HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
HI+S+ +G V L++ G+ NV D G TPL AC GH+++V++LL+ A
Sbjct: 15 HIASI-----KGDIPSVEYLLQNGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 316 VDVAGLWAYMPLYSSA 331
V+ G PL+ +A
Sbjct: 69 VNTTGYQNDSPLHDAA 84
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
+T ++ A KG++P ++ LL D + G TPL +A +L+ +++L+ KA +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFI 614
+ D+ LH A + IV++ +
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
++ S++ L+N + +D G T L A G L V L+ A VN N SPL
Sbjct: 22 DIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
AA+ G+ D+ LL +GA ++ G P+ + + ++ LL +KN +A
Sbjct: 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES-MKSLLLLPEKNESSSA 136
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 511 VEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVK 570
VE LL+ D ++ T ++ A G++ +++LLL + D+PL A K
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 571 TRNLEAIQMLIDKKAKITAVDKRG 594
+++ +++L+ A AV+ G
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFG 109
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTAL---MFAAQKGKLSFVRELVTRGADV 183
L A ++ ++ L + D + G TAL MF G + EL+ +GA
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSTAIALELLKQGASP 61
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
N +D SP+ AAR G+ D L++HGAD+ D G P+ A +GHT V+ L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ +D++ ++ L A RG ++V +L
Sbjct: 122 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 436 ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
A G+ EV LL + +AL++ G TAL + G IA+ LL GA N+QD SG
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSG 68
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
S + A + G ++ L++ DV++P ++ AV++G+ ++ L A DL
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLH 127
Query: 556 IATKDGDTPLLKAVKTRNLEAIQML 580
G TPL A++ + + +L
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDIL 152
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 267 GYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
G T I L+K+GA NV D GT+P+ A R G ++ + +L++ GA+V+V +P
Sbjct: 46 GSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 327 LY 328
++
Sbjct: 105 IH 106
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 407 GHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTAL 466
G I LLK GA+ +V +P+ A F + +++L+E+ +VN D G +
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 467 TIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+A ++G+ + V L + + ++ +D G + L A++ G + +V+ L
Sbjct: 106 HLAVQEGHTAV-VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GT+P+ A R G ++ + +L++ GA+V+V P+ +A T VV L + ++
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126
Query: 456 NALDKDGCTALTIACKDGYYEIAVLL 481
+ D G T L +A + G ++ +L
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTAL---MFAAQKGKLSFVRELVTRGADV 183
L A ++ ++ L + D + G TAL MF G + EL+ +GA
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSTAIALELLKQGASP 67
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
N +D SP+ AAR G+ D L++HGAD+ D G P+ A +GHT V+ L
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+D++ ++ L A RG ++V +L
Sbjct: 128 -AESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 436 ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
A G+ EV LL + +AL++ G TAL + G IA+ LL GA N+QD SG
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSG 74
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
S + A + G ++ L++ DV++P ++ AV++G+ ++ L A DL
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLH 133
Query: 556 IATKDGDTPLLKAVKTRNLEAIQML 580
G TPL A++ + + +L
Sbjct: 134 RRDARGLTPLELALQRGAQDLVDIL 158
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 267 GYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
G T I L+K+GA NV D GT+P+ A R G ++ + +L++ GA+V+V +P
Sbjct: 52 GSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 327 LY 328
++
Sbjct: 111 IH 112
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 407 GHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTAL 466
G I LLK GA+ +V +P+ A F + +++L+E+ +VN D G +
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 467 TIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+A ++G+ + V L + + ++ +D G + L A++ G + +V+ L
Sbjct: 112 HLAVQEGHTAV-VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GT+P+ A R G ++ + +L++ GA+V+V P+ +A T VV L + ++
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 132
Query: 456 NALDKDGCTALTIACKDGYYEIAVLL 481
+ D G T L +A + G ++ +L
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANV---DVAGLYCWTPLLVA-TLGNFTEVVELLLE- 450
G PL W+ EI LL NV D WTP +A ++GN EVV+ L +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL-EVVKSLYDR 94
Query: 451 -YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG 509
KP++N + G T L +A ++E++ L+ +GA + I+D+ L A G
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 510 IVEAL--LKKYVDVDIPGKERKTAVYTAVEKGN 540
++E L L K V+ K+ T ++ A+ +G+
Sbjct: 155 LIELLCGLGKSA-VNWQDKQGWTPLFHALAEGH 186
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
L E+ +Q L +K ++ +D +G L ++ L+++ +VN +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 187 D---NDNWSPLTYAAREGYTDVCAELLDH--GADLEHRDMGGWSPLMWASYKGHTDTVAL 241
D + W+P A G +V L D DL G + L A K +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG-AKVNVGDKVYGTTPLVWACRK 300
L++ A V ++ L AA G +++ LL G + VN DK G TPL A +
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAE 184
Query: 301 GHVEIVDILL-KAGANVDV 318
GH + +L+ K GA D+
Sbjct: 185 GHGDAAVLLVEKYGAEYDL 203
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 33/185 (17%)
Query: 432 PLLVATLGNFTEVVELLLEYKPNVN-ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
PL A + N V+ LL KP++ D+DG L + +EI LL+ +N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL-- 548
D DS T + A GN+ ++K L
Sbjct: 65 DDYPDDSGW------------------------------TPFHIACSVGNLEVVKSLYDR 94
Query: 549 TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKT 608
PDL T G T L AV + E Q LI+ A + DK LH A S
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 609 IVEVF 613
++E+
Sbjct: 155 LIELL 159
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 193 PLTYAAREGYTDVCAELLDHGADLE-HRDMGGWSPLMWA-SYKGHTDTVALL-------L 243
PL A E ELL L +D G PL W+ S++ H T LL L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV--YGTTPLVWACRKG 301
D D + +HI A G E+V L + K ++ +K+ G T L A K
Sbjct: 65 DDYPDDSGWTPFHI-----ACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKK 118
Query: 302 HVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
E+ L++ GA+V + + +PL+ +A
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTAL---MFAAQKGKLSFVRELVTRGADV 183
L A ++ ++ L + D + G TAL MF G + EL+ +GA
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSPAVALELLKQGASP 67
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
N +D SP+ AAR G+ D L++HGAD+ D G P+ A +GH+ V+ L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ +D++ ++ L A RG ++ +L
Sbjct: 128 PE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 436 ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
A G+ EV LL + +AL++ G TAL + G +A+ LL GA N+QD SG
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASG 74
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
S + A + G ++ L++ DV+ ++ A+ +G+ ++ L DL
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLH 133
Query: 556 IATKDGDTPL 565
G TPL
Sbjct: 134 HRDASGLTPL 143
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 502 AVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT-ANPDLEIATKD 560
A +G + + L ++ V D + KTA+ + L+LL A+P+++ A+
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDAS-- 73
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNN 620
G +P+ A +T L+ +++L++ A + A+D G +H+A+R ++V P+++
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA--PESD 131
Query: 621 ILLYRPNKAGETPYSI 636
L+ + +G TP +
Sbjct: 132 --LHHRDASGLTPLEL 145
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 415 LLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY 474
LLK GA+ +V +P+ A F + +++L+E+ +VNALD G + +A ++G+
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 475 YEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ V L + ++ +D SG + L A + G + +++ L
Sbjct: 120 SSV-VSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 272 VAL-LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
VAL L+K+GA NV D GT+P+ A R G ++ + +L++ GA+V+ +P++
Sbjct: 56 VALELLKQGASPNVQD-ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIH 112
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GT+P+ A R G ++ + +L++ GA+V+ P+ +A + VV L + ++
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP-ESDL 132
Query: 456 NALDKDGCTALTIACKDG 473
+ D G T L +A + G
Sbjct: 133 HHRDASGLTPLELARQRG 150
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTAL---MFAAQKGKLSFVRELVTRGADV 183
L A ++ ++ L + D + G TAL MF G + EL+ +GA
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSPAVALELLKQGASP 69
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
N +D SP+ AAR G+ D L++HGAD+ D G P+ A +GH+ V+ L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ +D++ ++ L A RG ++ +L
Sbjct: 130 PE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 436 ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
A G+ EV LL + +AL++ G TAL + G +A+ LL GA N+QD SG
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASG 76
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
S + A + G ++ L++ DV+ ++ A+ +G+ ++ L DL
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLH 135
Query: 556 IATKDGDTPL 565
G TPL
Sbjct: 136 HRDASGLTPL 145
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 502 AVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT-ANPDLEIATKD 560
A +G + + L ++ V D + KTA+ + L+LL A+P+++ A+
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDAS-- 75
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNN 620
G +P+ A +T L+ +++L++ A + A+D G +H+A+R ++V P+++
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA--PESD 133
Query: 621 ILLYRPNKAGETPYSI 636
L+ + +G TP +
Sbjct: 134 --LHHRDASGLTPLEL 147
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 415 LLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY 474
LLK GA+ +V +P+ A F + +++L+E+ +VNALD G + +A ++G+
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 475 YEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ V L + ++ +D SG + L A + G + +++ L
Sbjct: 122 SSV-VSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 272 VAL-LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
VAL L+K+GA NV D GT+P+ A R G ++ + +L++ GA+V+ +P++
Sbjct: 58 VALELLKQGASPNVQD-ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIH 114
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GT+P+ A R G ++ + +L++ GA+V+ P+ +A + VV L + ++
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP-ESDL 134
Query: 456 NALDKDGCTALTIACKDG 473
+ D G T L +A + G
Sbjct: 135 HHRDASGLTPLELARQRG 152
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANV---DVAGLYCWTPLLVA-TLGNFTEVVELLLE- 450
G PL W+ EI LL NV D WTP +A ++GN EVV+ L +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL-EVVKSLYDR 94
Query: 451 -YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG 509
KP++N + G T L +A ++E++ L+ +GA + I+D+ L A G
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 510 IVEAL--LKKYVDVDIPGKERKTAVYTAVEKGN 540
++E L L K V+ K+ T ++ A+ +G+
Sbjct: 155 LIELLCGLGKSA-VNWQDKQGWTPLFHALAEGH 186
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
L E+ +Q L +K ++ +D +G L ++ L+++ +VN +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 187 D---NDNWSPLTYAAREGYTDVCAELLDH--GADLEHRDMGGWSPLMWASYKGHTDTVAL 241
D + W+P A G +V L D DL G + L A K +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG-AKVNVGDKVYGTTPLVWACRK 300
L++ A V ++ L AA G +++ LL G + VN DK G TPL A +
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAE 184
Query: 301 GHVEIVDILL-KAGANVDV 318
GH + +L+ K GA D+
Sbjct: 185 GHGDAAVLLVEKYGAEYDL 203
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 33/185 (17%)
Query: 432 PLLVATLGNFTEVVELLLEYKPNVN-ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
PL A + N V+ LL KP++ D+DG L + +EI LL+ +N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL-- 548
D DS T + A GN+ ++K L
Sbjct: 65 DDYPDDSGW------------------------------TPFHIACSVGNLEVVKSLYDR 94
Query: 549 TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKT 608
PDL T G T L AV + E Q LI+ A + DK LH A S
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 609 IVEVF 613
++E+
Sbjct: 155 LIELL 159
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 193 PLTYAAREGYTDVCAELLDHGADLE-HRDMGGWSPLMWA-SYKGHTDTVALL-------L 243
PL A E ELL L +D G PL W+ S++ H T LL L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV-YGTTPLVWACRKGH 302
D D + +HI A G E+V L + K ++ G T L A K
Sbjct: 65 DDYPDDSGWTPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 303 VEIVDILLKAGANVDVAGLWAYMPLYSSA 331
E+ L++ GA+V + + +PL+ +A
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANV---DVAGLYCWTPLLVA-TLGNFTEVVELLLE- 450
G PL W+ EI LL NV D WTP +A ++GN EVV+ L +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL-EVVKSLYDR 94
Query: 451 -YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG 509
KP++N + G T L +A ++E++ L+ +GA + I+D+ L A G
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 510 IVEAL--LKKYVDVDIPGKERKTAVYTAVEKGN 540
++E L L K V+ K+ T ++ A+ +G+
Sbjct: 155 LIELLCGLGKSA-VNWQDKQGWTPLFHALAEGH 186
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
L E+ +Q L +K ++ +D +G L ++ L+++ +VN +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 187 D---NDNWSPLTYAAREGYTDVCAELLDH--GADLEHRDMGGWSPLMWASYKGHTDTVAL 241
D + W+P A G +V L D DL G + L A K +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG-AKVNVGDKVYGTTPLVWACRK 300
L++ A V ++ L AA G +++ LL G + VN DK G TPL A +
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAE 184
Query: 301 GHVEIVDILL-KAGANVDV 318
GH + +L+ K GA D+
Sbjct: 185 GHGDAAVLLVEKYGAEYDL 203
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 33/185 (17%)
Query: 432 PLLVATLGNFTEVVELLLEYKPNVN-ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
PL A + N V+ LL KP++ D+DG L + +EI LL+ +N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL-- 548
D DS T + A GN+ ++K L
Sbjct: 65 DDYPDDSGW------------------------------TPFHIACSVGNLEVVKSLYDR 94
Query: 549 TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKT 608
PDL T G T L AV + E Q LI+ A + DK LH A S
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 609 IVEVF 613
++E+
Sbjct: 155 LIELL 159
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 193 PLTYAAREGYTDVCAELLDHGADLE-HRDMGGWSPLMWA-SYKGHTDTVALL-------L 243
PL A E ELL L +D G PL W+ S++ H T LL L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV-YGTTPLVWACRKGH 302
D D + +HI A G E+V L + K ++ G T L A K
Sbjct: 65 DDYPDDSGWTPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 303 VEIVDILLKAGANVDVAGLWAYMPLYSSA 331
E+ L++ GA+V + + +PL+ +A
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAG-ANVDVAGLYCWTPLLV---ATLGNFTEVVELLL 449
S G T L ++ + +V LL +G VD ++P+++ ATL ++ +L
Sbjct: 109 SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQ 168
Query: 450 EYK-PNVNA-LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH 507
++ N+NA + G TAL +A G ++ LL A +N+QD G + L+ A + GH
Sbjct: 169 LFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228
Query: 508 RGIVEALLK-KYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
+ I LL D+ + ++ TA+ A++ G I +L
Sbjct: 229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 183 VNAEDNDNWSPLTYAAREGYTDVCAELLDHG-ADLEHRDMGGWSPLMW---ASYKGHTDT 238
VN D++ + L Y+ V +LLD G ++ ++ G+SP+M A+ K D
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 239 VALL-LDKNADVNAHGNYH-ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVW 296
+L L + ++NA + ++L+ A G ++V L+ A VNV D G+T L+
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMC 222
Query: 297 ACRKGHVEIVDILL 310
AC GH EI +LL
Sbjct: 223 ACEHGHKEIAGLLL 236
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLN-SGAYIN 489
T L++A +VV+ LL + +VN D DG TAL AC+ G+ EIA LLL I+
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKK 517
+ DR G + L+ A+ G I L +
Sbjct: 245 LTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
Query: 438 LGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG-AYINIQDRSGD 496
L F + LL+Y VN D +G TAL + + + LL+SG ++ Q+R+G
Sbjct: 89 LVTFRAMSARLLDYV--VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY 146
Query: 497 SNLIHAVKGGHRGI--VEALLKKYVDVDIPGKER---KTAVYTAVEKGNVPILKLLLTAN 551
S ++ + +E +L+ + +I K +TA+ AV G V ++K LL
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE 206
Query: 552 PDLEIATKDGDTPLLKAVKTRNLEAIQMLID-KKAKITAVDKRGDTVLHIAMRARSKTIV 610
D+ + DG T L+ A + + E +L+ I+ D+ G T L +A+ A I
Sbjct: 207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIA 266
Query: 611 EVF 613
+
Sbjct: 267 SML 269
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 62 RSTTRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVS 121
R+ + LLD + + TA++ +V N P+++ LL D +
Sbjct: 93 RAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLL----DSGVCKVDKQNRAGYSP 148
Query: 122 LCYRTLQSYIAEDNLDS-LQTF-LENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTR 179
+ L + +D++++ LQ F L N A G TALM A G++ V+ L+
Sbjct: 149 IMLTALATLKTQDDIETVLQLFRLGNINAKASQA---GQTALMLAVSHGRVDVVKALLAC 205
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLD-HGADLEHRDMGGWSPLMWASYKGHTDT 238
ADVN +D+D + L A G+ ++ LL D+ D G + LM A G ++
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265
Query: 239 VALLLDK 245
++L +
Sbjct: 266 ASMLYSR 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA-N 551
++G + L+ AV G +V+ALL DV++ + TA+ A E G+ I LLL +
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS 240
Query: 552 PDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK 583
D+ + +DG T L+ A+ E ML +
Sbjct: 241 CDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERK-------TAVYTAVEKGN 540
+NI D +G++ L ++V + +V+ LL V + + R TA+ T + +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 541 VP-ILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLH 599
+ +L+L N + + A++ G T L+ AV ++ ++ L+ +A + D G T L
Sbjct: 163 IETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Query: 600 IAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILA 646
A K I + + P +I L ++ G T + ++ +S +A
Sbjct: 222 CACEHGHKEIAGLLLAVPSCDISL--TDRDGSTALMVALDAGQSEIA 266
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V TPL +A EVV+LLLE +VNA D
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 460 KDGCTALTIACKDGYYEIAVLL 481
K G TA I+ +G ++A +L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADV A+D + +PL AAR G+ +V LL+ GAD+
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 218 HRDMGGWSPLMWASYKGHTDTVALL 242
+D G + + G+ D +L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+D L AAR G D L+ +GAD+ +D G +PL A+ GH + V LLL+ A
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALL 275
DVNA + ++ + G ++ +L
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
L+ AA G + V +L+ GA V DK G+TPL A R GH+E+V +LL+AGA+V+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +V A DK+G T L +A ++G+ E+ LLL +GA +N QD
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 493 RSGDSNLIHAVKGGHRGIVEAL 514
+ G + ++ G+ + E L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADV A + L AA G+ E+V LL++ GA VN D
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 287 KVYGTTPLVWACRKGHVEIVDIL 309
K +G T + G+ ++ +IL
Sbjct: 70 K-FGKTAFDISIDNGNEDLAEIL 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
G+TPL A R GH+E+V +LL+AGA+V+ + T ++ ++ E+L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ K+G TPL A + +LE +++L++
Sbjct: 3 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVF 613
A + A DK G T I++ ++ + E+
Sbjct: 63 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
D ++ + N VA +D NG T L AA+ G L V+ L+ GADVNA+D +
Sbjct: 20 DEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Query: 197 AAREGYTDVCAELL 210
+ G D+ AE+L
Sbjct: 79 SIDNGNEDL-AEIL 91
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + G + +L+ +GA + +D++G + L A + GH +V+ LL+ DV+ K
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 529 KTAVYTAVEKGNVPILKLL 547
KTA +++ GN + ++L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
LL+A + + +++L+ A + A DK G T LH+A R +V++ + + +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VN 66
Query: 625 RPNKAGETPYSIDMNNQKSILAQ 647
+K G+T + I ++N LA+
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAE 89
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
AE DN PL AA+ G E LD+ + D G + L WA + GH D V L
Sbjct: 70 AESIDN--PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Query: 245 K-NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNV 284
+ N ++N ++L AA +GY +IV LL+ KGA+ ++
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 435 VATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIA-VLLLNSGAYINIQDR 493
A GN + + E L + + VN LDK G TAL AC G+ +I L +N Q++
Sbjct: 80 AAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNK 138
Query: 494 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
GD+ L A G+ IV+ LL K D+ E+K A A +LK
Sbjct: 139 LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLK 190
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 562 DTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNI 621
D PL +A K NL ++ +D + + +DK G T L+ A K IVE P NI
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP--NI 131
Query: 622 LLYRPNKAGET 632
L + NK G+T
Sbjct: 132 ELNQQNKLGDT 142
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 487 YINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKL 546
Y+ Q S D+ L A K G+ + L V V+ K TA+Y A G+ I++
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEX 124
Query: 547 LLTANPDLEIATKD--GDTPLLKAVKTRNLEAIQMLIDKKAK 586
L T P++E+ ++ GDT L A + +Q+L+ K A+
Sbjct: 125 LFT-QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 36/99 (36%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G+T L WAC GH +IV+ L FT+ PN+
Sbjct: 106 GSTALYWACHGGHKDIVEXL-------------------------FTQ---------PNI 131
Query: 456 --NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
N +K G TAL A GY +I LLL GA ++++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 263 AAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILL 310
AA RG + + VN DK G+T L WAC GH +IV+ L
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLF 126
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 160 ALMFAA--QKGKLSFVRELVTRGADVN--AEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
AL+F A L + + + GADVN DN +PL A C LL +GA+
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ D G PL A+ GHT L L + AD+ A + L A +IV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 276 ------VKKGAKVNVGDKVY 289
+ A+ GD+ Y
Sbjct: 321 RLAKMREAEAAQGQAGDETY 340
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 107 EIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGG----TALM 162
++ +K P S+ + SL L + A + SL T + AD NGG T L+
Sbjct: 182 DLRSKPEPPSEDLGSLHPGALL-FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLI 240
Query: 163 FAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMG 222
A L L+ GA+VN D+ PL +A G+T + L GADL RD
Sbjct: 241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300
Query: 223 GWSPLMWASYKGHTDTVALL 242
G PL A + D V LL
Sbjct: 301 GRDPLTIAMETANADIVTLL 320
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%)
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
+D T L A LL +GA +N D +G L HA GH G+ LK+
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
D+ E + + A+E N I+ LL A
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL+ AT N E LL+ NVN D G L A G+ +A L L GA +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 491 QDRSGDSNLIHAVKGGHRGIVEAL 514
+D G L A++ + IV L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%)
Query: 397 TTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN 456
TPL+ A + + LL+ GANV+ A PL AT+ T + L L+ ++
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 457 ALDKDGCTALTIACKDGYYEIAVLL 481
A D +G LTIA + +I LL
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 160 ALMFAA--QKGKLSFVRELVTRGADVN--AEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
AL+F A L + + + GADVN DN +PL A C LL +GA+
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ D G PL A+ GHT L L + AD+ A + L A +IV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 276 ------VKKGAKVNVGDKVY 289
+ A+ GD+ Y
Sbjct: 321 RLAKMREAEAAQGQAGDETY 340
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 108 IATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGG----TALMF 163
+ +K P S+ + SL L + A + SL T + AD NGG T L+
Sbjct: 183 LRSKPEPPSEDLGSLHPGALL-FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQ 241
Query: 164 AAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
A L L+ GA+VN D+ PL +A G+T + L GADL RD G
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 224 WSPLMWASYKGHTDTVALL 242
PL A + D V LL
Sbjct: 302 RDPLTIAMETANADIVTLL 320
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%)
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
+D T L A LL +GA +N D +G L HA GH G+ LK+
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
D+ E + + A+E N I+ LL A
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL+ AT N E LL+ NVN D G L A G+ +A L L GA +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 491 QDRSGDSNLIHAVKGGHRGIVEAL 514
+D G L A++ + IV L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 398 TPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
TPL+ A + + LL+ GANV+ A PL AT+ T + L L+ ++ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 458 LDKDGCTALTIACKDGYYEIAVLL 481
D +G LTIA + +I LL
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 160 ALMFAA--QKGKLSFVRELVTRGADVNAED--NDNWSPLTYAAREGYTDVCAELLDHGAD 215
AL+F A L + + + GADVN + DN +PL A C LL +GA+
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ D G PL A+ GHT L L + AD+ A + L A +IV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 276 ------VKKGAKVNVGDKVY 289
+ A+ GD+ Y
Sbjct: 321 RLAKMREAEAAQGQAGDETY 340
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 107 EIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGG----TALM 162
++ +K P S+ + SL L + A + SL T + AD NGG T L+
Sbjct: 182 DLRSKPEPPSEDLGSLHPGALL-FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLI 240
Query: 163 FAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMG 222
A L L+ GA+VN D+ PL +A G+T + L GADL RD
Sbjct: 241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300
Query: 223 GWSPLMWASYKGHTDTVALL 242
G PL A + D V LL
Sbjct: 301 GRDPLTIAMETANADIVTLL 320
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL+ AT N E LL+ NVN D G L A G+ +A L L GA +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 491 QDRSGDSNLIHAVKGGHRGIVEAL 514
+D G L A++ + IV L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%)
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV 519
+D T L A LL +GA +N D +G L HA GH G+ LK+
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
D+ E + + A+E N I+ LL A
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%)
Query: 397 TTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVN 456
TPL+ A + + LL+ GANV+ A PL AT+ T + L L+ ++
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 457 ALDKDGCTALTIACKDGYYEIAVLL 481
A D +G LTIA + +I LL
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L+ AA+ G+ VR L+ GADV A+D + +PL AAR G+ +V LL+ GAD+
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 218 HRDMGGWSPLMWASYKGHTDTVALL 242
+D G + + G+ D +L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L+ A R G + V IL+ GA+V TPL +A EVV+LLLE +V A D
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 460 KDGCTALTIACKDGYYEIAVLL 481
K G TA I+ +G ++A +L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 176 LVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGH 235
LV RG+ + + D L AAR G D L+ +GAD+ +D G +PL A+ GH
Sbjct: 13 LVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGH 69
Query: 236 TDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ V LLL+ ADV A + ++ + G ++ +L
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
L+ AA G + V +L+ GA V DK G+TPL A R GH+E+V +LL+AGA+V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A + V +L+ +V A DK+G T L +A ++G+ E+ LLL +GA + QD
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 493 RSGDSNLIHAVKGGHRGIVEAL 514
+ G + ++ G+ + E L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ A+ G D V +L+ ADV A + L AA G+ E+V LL++ GA V D
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 287 KVYGTTPLVWACRKGHVEIVDIL 309
K +G T + G+ ++ +IL
Sbjct: 88 K-FGKTAFDISIDNGNEDLAEIL 109
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ K+G TPL A + +LE +++L++
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVF 613
A + A DK G T I++ ++ + E+
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
G+TPL A R GH+E+V +LL+AGA+V + T ++ ++ E+L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 113 LPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSF 172
+PR M S + L D ++ + N VA +D NG T L AA+ G L
Sbjct: 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEV 72
Query: 173 VRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
V+ L+ GADV A+D + + G D+ AE+L
Sbjct: 73 VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL-AEIL 109
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
P + + D L A + G + +L+ +GA + +D++G + L A + GH +V+
Sbjct: 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
LL+ DV K KTA +++ GN + ++L
Sbjct: 75 LLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
LL+A + + +++L+ A + A DK G T LH+A R +V++ + + +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VX 84
Query: 625 RPNKAGETPYSIDMNNQKSILAQ 647
+K G+T + I ++N LA+
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAE 107
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 221 MGGWSP--LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
+GG S L A+ +G +TV LL+ AD NA + I G ++ LL+
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG-RRPIQVMMMGSAQVAELLLLH 66
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
GA+ N D T P+ A R+G ++ + +L +AGA +DV W +P+
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV 115
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G VE V LL+AGA+ + + P+ V +G+ +V ELLL + N D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNCAD 74
Query: 460 KDGCT-ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
T + A ++G+ + V+L +GA +++ D G + A + GHR I L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDNDNWS-PLTYAAREGYTDVCAELLDHGADLEHR 219
+M +AQ +L L+ GA+ N D + P+ AAREG+ D L GA L+
Sbjct: 53 MMGSAQVAEL-----LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107
Query: 220 DMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D G P+ A +GH D L D
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 157 GGTA---LMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
GG++ L AA +G++ VR+L+ GAD NA + P+ G V LL HG
Sbjct: 9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG 67
Query: 214 ADLEHRDMGGWS-PLMWASYKGHTDTVALL 242
A+ D + P+ A+ +G DT+ +L
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVL 97
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G TAL + G R L+ RGA+ + +D ++ + AAR G+ D LL+ AD+
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH-ISSLIWAAGRGYTEIVALL 275
D G PL A+ +GH V L+ A H N+ ++ A G E+V+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 276 VKKGA 280
GA
Sbjct: 157 QANGA 161
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G +E + LL+ NV+ + T L V LGN E+ LL N + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+ G + A + G+ + LL A +NI+D G+ L A K GH +VE L+K
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 407 GHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTAL 466
G+ EI LL GAN D+ + + A F + ++ LLE++ +VN D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 467 TIACKDGYYEIAVLLL-NSGAYINIQDRSGDS 497
+A K+G+ + L+ ++ + + ++ GD+
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G TAL + K G EIA LL GA +++DR+G + + A + G ++ LL+ DV
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLL 548
+I E ++ A ++G++ +++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 539 GNVPILKLLLT--ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDT 596
GN I + LL ANPDL+ T G + A + L+ +Q L++ +A + D G+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 597 VLHIAMRARSKTIVEVFIRNPKNNI 621
LH+A + +VE +++ +N+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL 216
G TAL + G R L+ RGA+ + +D ++ + AAR G+ D LL+ AD+
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 217 EHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH-ISSLIWAAGRGYTEIVALL 275
D G PL A+ +GH V L+ A H N+ ++ A G E+V+L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 276 VKKGA 280
GA
Sbjct: 157 QANGA 161
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G +E + LL+ NV+ + T L V LGN E+ LL N + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+ G + A + G+ + LL A +NI+D G+ L A K GH +VE L+K
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 407 GHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTAL 466
G+ EI LL GAN D+ + + A F + ++ LLE++ +VN D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 467 TIACKDGYYEIAVLLL-NSGAYINIQDRSGDS 497
+A K+G+ + L+ ++ + + ++ GD+
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G TAL + K G EIA LL GA +++DR+G + + A + G ++ LL+ DV
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLL 548
+I E ++ A ++G++ +++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 539 GNVPILKLLLT--ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDT 596
GN I + LL ANPDL+ T G + A + L+ +Q L++ +A + D G+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 597 VLHIAMRARSKTIVEVFIRNPKNNI 621
LH+A + +VE +++ +N+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 168 GKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPL 227
G R L+ RGA+ + +D ++ + AAR G+ D LL++ AD+ D G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 228 MWASYKGHTDTVALLLDKNADVNAHGNYHISSLI-WAAGRGYTEIVALLVKKGA 280
A+ +GH V L+ A H N+ + A G E+V+L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G +E + LL+ NV+ + T L V LGN E+ LL N + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+ G + A + G+ + LL + A +NI+D G+ L A K GH +VE L+K
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G TAL + K G EIA LL GA +++DR+G + + A + G ++ LL+ DV
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLL 548
+I E ++ A ++G++ +++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+G T L + G+ EI LL GAN D+ + + A F + ++ LLE +
Sbjct: 36 GFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLL-NSGAYINIQDRSGDS 497
+VN D +G L +A K+G+ + L+ ++ + + ++ GD+
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 539 GNVPILKLLL--TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDT 596
GN I + LL ANPDL+ T G + A + L+ +Q L++ +A + D G+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 597 VLHIAMRARSKTIVEVFIRNPKNNI 621
LH+A + +VE +++ +N+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G VE V LL+AGAN + Y P+ V +G+ V ELLL + N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 460 KDGCT-ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
T + A ++G+ + V+L +GA ++++D G + A + GHR + L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L A+ +G + V LL+ A+ NA +Y I G + LL+ GA+ N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYG-RRPIQVMMMGSARVAELLLLHGAEPNCAD 74
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
T P+ A R+G ++ + +L +AGA +DV W +P+
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 176 LVTRGADVNAEDNDNWS-PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKG 234
L+ GA+ N D + P+ AAREG+ D L GA L+ RD G P+ A G
Sbjct: 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122
Query: 235 HTDTVALL 242
H D L
Sbjct: 123 HRDVARYL 130
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 168 GKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPL 227
G R L+ RGA+ + +D ++ + AAR G D LL+ AD+ D G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 228 MWASYKGHTDTVALLLDKNADVNAHGNYHISSLI-WAAGRGYTEIVALLVKKGA 280
A+ +GH V L+ A H N+ + A G E+V+L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G +E + LL+ NV+ + T L V LGN E+ LL N + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+ G + A + G + LL A +NI+D G+ L A K GH +VE L+K
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G TAL + K G EIA LL GA +++DR+G + + A + G ++ LL+ DV
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLL 548
+I E ++ A ++G++ +++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+G T L + G+ EI LL GAN D+ + + A + ++ LLE++
Sbjct: 36 GFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLL-NSGAYINIQDRSGDS 497
+VN D +G L +A K+G+ + L+ ++ + + ++ GD+
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 539 GNVPILKLLL--TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDT 596
GN I + LL ANPDL+ T G + A + L+ +Q L++ +A + D G+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRT--GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 597 VLHIAMRARSKTIVEVFIRNPKNNI 621
LH+A + +VE +++ +N+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+D G TAL A G V+ LV G +VNA D+D W+PL AA VC L++ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 214 A 214
A
Sbjct: 127 A 127
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 506 GHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
G +V+ ++ + D +P E TA++ AV G+ I+K L+ ++ A DG TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 566 LKAVKTRNLEAIQMLIDKKAKITAV 590
A N++ + L++ A + A+
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAM 132
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ +S +G D V ++ + D + + I++L A G+TEIV LV+ G VN D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANV 316
G TPL A +V++ L+++GA V
Sbjct: 101 SD-GWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G T L A GH EIV L++ G NV+ A WTPL A N +V + L+E V
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 456 NALDKDGCTALTIAC---KDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
A+ C ++GY + + L +Q++ G N +G++
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLY------GVQEKMGIMN---------KGVIY 174
Query: 513 AL--LKKYVDVDIPGKE 527
AL + D ++P KE
Sbjct: 175 ALWDYEPQNDDELPMKE 191
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
L+ ++ +G+ V+ ++ D + +++ + L A G+T++ L+ G ++ D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 221 MGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGR------GYTEIVAL 274
GW+PL A+ + L++ A V A S + AA + GYT+
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFA---MTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 275 LVKKGAKVNVGDK 287
L K+ + +K
Sbjct: 158 LYGVQEKMGIMNK 170
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G T L A GH EIV L++ G NV+ A + PL+ +A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+D G TAL A G V+ LV G +VNA D+D W+PL AA VC L++ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 214 A 214
A
Sbjct: 127 A 127
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 506 GHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
G +V+ ++ + D +P E TA++ AV G+ I+K L+ ++ A DG TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 566 LKAVKTRNLEAIQMLIDKKAKITAV 590
A N++ + L++ A + A+
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAM 132
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G T L A GH EIV L++ G NV+ A WTPL A N +V + L+E V
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 456 NALDKDGCTALTIAC---KDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
A+ C ++GY + + L +Q++ G N +G++
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLY------GVQEKMGIMN---------KGVIY 174
Query: 513 AL--LKKYVDVDIPGKE 527
AL + D ++P KE
Sbjct: 175 ALWDYEPQNDDELPMKE 191
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L+ +S +G D V ++ + D + + I++L A G+TEIV LV+ G VN D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANV 316
G TPL A +V++ L+++GA V
Sbjct: 101 SD-GWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
L+ ++ +G+ V+ ++ D + +++ + L A G+T++ L+ G ++ D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 221 MGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGR------GYTEIVAL 274
GW+PL A+ + L++ A V A S + AA + GYT+
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFA---MTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 275 LVKKGAKVNVGDK 287
L K+ + +K
Sbjct: 158 LYGVQEKMGIMNK 170
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G T L A GH EIV L++ G NV+ A + PL+ +A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 168 GKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPL 227
G R L+ RGA+ + +D + + AAR G+ D LL+ AD+ D G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 228 MWASYKGHTDTVALLLDKNADVNAHGNYHISSLI-WAAGRGYTEIVALLVKKGA 280
A+ +GH V L+ A H N+ + A G E+V+L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G +E + LL+ NV+ + T L V LGN E+ LL N + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKD 67
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+ G + A + G+ + LL A +NI+D G+ L A K GH +VE L+K
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G TAL + K G EIA LL GA +++DR+G++ + A + G ++ LL+ DV
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLL 548
+I E ++ A ++G++ +++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+G T L + G+ EI LL GAN D+ + A F + ++ LLE++
Sbjct: 36 GFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLL-NSGAYINIQDRSGDS 497
+VN D +G L +A K+G+ + L+ ++ + + ++ GD+
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 539 GNVPILKLLL--TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDT 596
GN I + LL ANPDL+ T G+ + A + L+ +Q L++ +A + D G+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRT--GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 597 VLHIAMRARSKTIVEVFIRNPKNNI 621
LH+A + +VE +++ +N+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 209 LLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGY 268
L + DL+ R G +PL+ A+ + L++ +ADVNA + S+L WAA
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 269 TEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMP 326
+ +L+K GA ++ + TPL A R+G E +LL AN D+ +P
Sbjct: 61 VDAAVVLLKNGANKDMQNN-KEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 117
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 143 LENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGY 202
L N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 203 TDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK--NADVNAHGNYHISSL 260
D LL +GA+ + ++ +PL A+ +G +T +LLD N D+ H + +
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 261 IWAAGRGYTEIVALL 275
A R + +IV LL
Sbjct: 121 --AQERMHHDIVRLL 133
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 176 LVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGH 235
L R D++A +D +PL AAR + +L++ AD+ D G S L WA+ +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 236 TDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLV 295
D +LL A+ + N + L AA G E +L+ A ++ D + P
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHM-DRLPRD 119
Query: 296 WACRKGHVEIVDIL 309
A + H +IV +L
Sbjct: 120 IAQERMHHDIVRLL 133
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TPL++A ++E L+ +VNA+D G +AL A + AV+LL +GA ++
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 491 QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
Q+ ++ L A + G + LL + + DI + A E+ + I++LL
Sbjct: 77 QNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
GTTPL+ A R +++ L+ + A+V+ + L A N + +LL+ N
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
+ + T L +A ++G YE A +LL+ A +I D
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G + L WA +V+ +LLK GAN D+ TPL +A E ++LL++ N
Sbjct: 48 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 107
Query: 456 NALDKDGCTALTIACKDGYYEIAVLL 481
+ D IA + +++I LL
Sbjct: 108 DITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
DL+ DG TPL+ A + ++ LI+ A + AVD G + LH A + V
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 613 FIRNPKNNILLYRPNKAGETP 633
++N N + N ETP
Sbjct: 67 LLKNGANKDM---QNNKEETP 84
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
DG T L +A + + L+NS A +N D G S L A + LLK +
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLT--ANPDL 554
D+ + +T ++ A +G+ K+LL AN D+
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI 109
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKG 301
L ++ D++A + + LI AA ++ L+ A VN D + G + L WA
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL-GKSALHWAAAVN 59
Query: 302 HVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+V+ +LLK GAN D+ PL+ +A
Sbjct: 60 NVDAAVVLLKNGANKDMQNNKEETPLFLAA 89
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
++ G TAL A S V L+T GA+VN+ D+ W+PL AA T +C L+ HG
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 214 A 214
A
Sbjct: 111 A 111
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G T L A + IVD L+ AGANV+ + WTPL A N T + L+++ +
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Query: 456 NALD-KDGCTALTIAC---KDGYYEIAVL---------LLNSGAYINIQDRSGD 496
A DG TA C ++GY + A L+NSGA + D S +
Sbjct: 114 FATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE 166
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%)
Query: 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT 558
L+ A G +V+ +K+ D P +E TA++ A+ N I+ L+TA ++
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAV 590
G TPL A + L+ A I A
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 433 LLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
LL A L EVV+ ++ + + +++G TAL A Y I L+ +GA +N D
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 493 RSGDSNLIHAVKGGHRGIVEALLK 516
G + L A I AL++
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQ 108
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD 286
L A+ +G + V LL+ A NA +Y I G + LL+ GA+ N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYG-RRPIQVMMMGSARVAELLLLHGAEPNCAD 74
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPL 327
T P+ A R+G ++ + +L +AGA +DV W +P+
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 400 LVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
L A +G VE V LL+AGA + Y P+ V +G+ V ELLL + N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 460 KDGCT-ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
T + A ++G+ + V+L +GA ++++D G + A + GHR + L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 176 LVTRGADVNAEDNDNWS-PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKG 234
L+ GA+ N D + P+ AAREG+ D L GA L+ RD G P+ A G
Sbjct: 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122
Query: 235 HTDTVALL 242
H D L
Sbjct: 123 HRDVARYL 130
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TP A + + LLE + +V+A+D++G TAL G + LL +GA ++
Sbjct: 47 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 491 QDRSGDSNLIHAVKGGHR-GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+D G +H G R +VEAL++ D+++ + TA+ A E ILK
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE-----ILKTTPK 160
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLE--AIQMLIDKKAK 586
NP ++ + G ++ ++ + E + +++K+ K
Sbjct: 161 GNP-MQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGK 198
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED-NDNWSPLTY 196
+L LE++ D D+NG TAL+F A G VR L GAD++ D + L
Sbjct: 60 ALSQLLEDRDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPL 227
AA +V L++ GAD+E D G + L
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 182 DVNAEDNDNWSPLTYAAREGYTDVCAELL-DHGADLEHRDM-GGWSPLMWASYKGHTDTV 239
DV+A D + + L + A G +D C LL + GADL+HRDM GG + L A+ + V
Sbjct: 69 DVDAVDENGRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127
Query: 240 ALLLDKNADVNAHGNYHISSL 260
L++ AD+ +++L
Sbjct: 128 EALVELGADIEVEDERGLTAL 148
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 225 SPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNV 284
+P A+ K ++ LL+ + DV+A ++L++ AG G + V LL + GA ++
Sbjct: 47 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 285 GDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
D G T L A E+V+ L++ GA+++V
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINI 490
TP A + + LLE + +V+A+D++G TAL G + LL +GA ++
Sbjct: 46 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 491 QDRSGDSNLIHAVKGGHR-GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+D G +H G R +VEAL++ D+++ + TA+ A E ILK
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE-----ILKTTPK 159
Query: 550 ANP 552
NP
Sbjct: 160 GNP 162
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 182 DVNAEDNDNWSPLTYAAREGYTDVCAELL-DHGADLEHRDM-GGWSPLMWASYKGHTDTV 239
DV+A D + + L + A G +D C LL + GADL+HRDM GG + L A+ + V
Sbjct: 68 DVDAVDENGRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 126
Query: 240 ALLLDKNADVNAHGNYHISSL 260
L++ AD+ +++L
Sbjct: 127 EALVELGADIEVEDERGLTAL 147
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED-NDNWSPLTY 196
+L LE++ D D+NG TAL+F A G VR L GAD++ D + L
Sbjct: 59 ALSQLLEDRDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPL 227
AA +V L++ GAD+E D G + L
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 225 SPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNV 284
+P A+ K ++ LL+ + DV+A ++L++ AG G + V LL + GA ++
Sbjct: 46 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 285 GDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
D G T L A E+V+ L++ GA+++V
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 520 DVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIA-TKDGDTPLLKAVKTRNLEAIQ 578
DVD + +TA+ G+ ++LL A DL+ + G T L A E ++
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 579 MLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
L++ A I D+RG T L +A E+ PK N + +
Sbjct: 128 ALVELGADIEVEDERGLTALELAR--------EILKTTPKGNPMQF 165
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 527 ERKTAVYTAVEKGNVPILKLLLTANPDLEI-ATKD------------GDTPLLKAVKTRN 573
E +TA++ AV NV +++ LL + AT G+ PL A +
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 574 LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYR-------- 625
E +++LI+ A I A D G+TVLHI + +KT F N +L Y
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT----FACQMYNLLLSYDGGDHLKSL 189
Query: 626 ---PNKAGETPYSI 636
PN G TP+ +
Sbjct: 190 ELVPNNQGLTPFKL 203
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 134 DNLDSLQTFLENKRTVADDRDDN----GGTALMFAAQKGKLSFVRELVTRGADVNAEDND 189
DNL++ +E + + + G TAL A ++ VR L+ RGA V+A
Sbjct: 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 190 NW-------------SPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
+ PL++AA G ++ L++HGAD+ +D G
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 513 ALLKKYVD-VDIPGK--------ERKTAVYTAV---EKGNVPILKLLLTANPDLEIATKD 560
LL+ Y D VD+ K +TA++ AV ++ ++ I+ L+ + +L+ T
Sbjct: 145 GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 204
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
G T L T N E +++L+ KA I ++ G+T L IA R + + E+ +
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 510 IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAV 569
IV+ L++ ++D + TA++ N LKLLL +EIA + G+TPL A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 570 KTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRAR 605
+ ++ ++L A+ R ++ +H+ R
Sbjct: 247 RLKHEHCEELLTQ------ALSGRFNSHVHVEYEWR 276
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 444 VVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAV 503
+V+ L++ N++ G TAL C E LLL A I I + SG++ L A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 504 KGGHRGIVEALLK 516
+ H E L +
Sbjct: 247 RLKHEHCEELLTQ 259
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 554 LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKR-GDTVLHIAMRARSKTIVEV 612
LE DG TPL AV ++ E +++L D A + + G T LH+A+ A++ +++E+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 613 FIR 615
++
Sbjct: 211 LLK 213
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYS 329
E+V LL GA +N + G TPL A ++++LLKAGA+ PL S
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 330 SAL 332
+ L
Sbjct: 232 ALL 234
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 530 TAVYTAVEKGNVPILKLLL---TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586
TA++ AV + P L LL + L++ G T L A ++ L A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 587 ITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
+ ++ G T LH+A R R+ T V ++
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVN-AEDNDNWSPLTYAAREGYTDVCAELLDHGA 214
+G T L A VR L GAD+N E +PL A V LL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 215 DLEHRDMGGWSPLMWA 230
D R GG +PL A
Sbjct: 217 DPTARMYGGRTPLGSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 554 LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKR-GDTVLHIAMRARSKTIVEV 612
LE DG TPL AV ++ E +++L D A + + G T LH+A+ A++ +++E+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 613 FIR 615
++
Sbjct: 211 LLK 213
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYS 329
E+V LL GA +N + G TPL A ++++LLKAGA+ PL S
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 330 SAL 332
+ L
Sbjct: 232 ALL 234
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 530 TAVYTAVEKGNVPILKLLL---TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586
TA++ AV + P L LL + L++ G T L A ++ L A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 587 ITAVDKRGDTVLHIAMRARSKTIVEVFIR 615
+ ++ G T LH+A R R+ T V ++
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVN-AEDNDNWSPLTYAAREGYTDVCAELLDHGA 214
+G T L A VR L GAD+N E +PL A V LL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 215 DLEHRDMGGWSPLMWA 230
D R GG +PL A
Sbjct: 217 DPTARMYGGRTPLGSA 232
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 31/263 (11%)
Query: 263 AAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLW 322
AA +G T+ V L++ G + ++ +G T L AC+ G V+ L G +V LW
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNR-FGCTALHLACKFGCVDTAKYLASVG---EVHSLW 82
Query: 323 -AYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFT 381
P++ LA ++ L L G + +S L + E+
Sbjct: 83 HGQKPIH---LAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSH------- 132
Query: 382 FSSLLFVLVMHLSYGTTPLVWACRKG--HVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
V H G T L W G ++E + IL++ GA+ TPL A
Sbjct: 133 --------VKHCK-GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEF 183
Query: 440 NFTEVVELLLEYKPNVNAL-----DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRS 494
E ++L + P+ ++L +K G + L A + ++A + G +N +D
Sbjct: 184 RNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNE 243
Query: 495 GDSNLIHAVKGGHRGIVEALLKK 517
L +V+ + + LL+K
Sbjct: 244 HTVPLYLSVRAAXVLLTKELLQK 266
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 26/206 (12%)
Query: 435 VATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY------- 487
VA T+ V L+E + ++ GCTAL +ACK G + A L + G
Sbjct: 26 VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85
Query: 488 --INIQDRSGDSNLIHAVKGG--HRG-IVEALLKK-------YVDVDIPGKERKTAVYTA 535
I++ + ++L+ A+ G RG E+LL + + + + +TA++
Sbjct: 86 KPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWC 145
Query: 536 VEKGN--VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLID-----KKAKIT 588
V G + +K+L+ K +TPL +A + RN EA+ + D ++
Sbjct: 146 VGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLD 205
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFI 614
+K+G++ LH A+ + + F+
Sbjct: 206 YANKQGNSHLHWAILINWEDVAXRFV 231
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 26/178 (14%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
DD + AA+KG+ VR L+ G ++ + L A + G D L G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLD----------------KNADVNAHGNY-- 255
H G P+ A TD V L++ +VN G++
Sbjct: 77 E--VHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 256 HI---SSLIWAAGRG--YTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
H ++L W G G Y E + +LV+ GA DK TPL A + E +D+
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKA-DETPLXRAXEFRNREALDL 191
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 515 LKKYVDVDIPGKERK--TAVYTAVEKGNVPILKLLLTANPDLEIATKD------------ 560
LK++V+ K TA++ A+E+ N ++ LL+ D++ A
Sbjct: 86 LKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 561 --GDTPLLKAVKTRNLEAIQMLID---KKAKITAVDKRGDTVLHIAMRARSKTIVEV-FI 614
G+ PL A T L ++ L+ + A I+A D G+TVLH + T+ F+
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
Query: 615 RNPKNNILL 623
+ N IL+
Sbjct: 206 TSXYNEILI 214
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 76/197 (38%), Gaps = 48/197 (24%)
Query: 137 DSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTY 196
DSL+ F+ T D G TAL A ++ + V LV GADV A N ++ T
Sbjct: 84 DSLKQFVNASYT---DSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKT- 139
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN---ADVNAH- 252
R G+ G PL A+ V LL + AD++A
Sbjct: 140 KGRPGF------------------YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
Query: 253 --GNYHISSLIWAAGR----------GYTEIVALLVKKGAKVNVGDKVY------GTTPL 294
GN + +L+ A Y EI+ L GAK++ K+ G TPL
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSXYNEILIL----GAKLHPTLKLEEITNRKGLTPL 237
Query: 295 VWACRKGHVEIVDILLK 311
A G + ++ +L+
Sbjct: 238 ALAASSGKIGVLAYILQ 254
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 389 LVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
LV+HL+ V + + +VD +++ G ++D T L A L N + ++LL
Sbjct: 173 LVLHLA------VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226
Query: 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
L+ + V +++ G TAL IA K + E LL + A
Sbjct: 227 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 538 KGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTV 597
+ ++P++ ++ L+ DG+T L A + +++L+ +A + V++ G+T
Sbjct: 184 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243
Query: 598 LHIAMRARSKTIVEVF 613
L IA + K E+
Sbjct: 244 LDIARKKHHKECEELL 259
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 389 LVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
LV+HL+ V + + +VD +++ G ++D T L A L N + ++LL
Sbjct: 192 LVLHLA------VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
Query: 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
L+ + V +++ G TAL IA K + E LL + A
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 538 KGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTV 597
+ ++P++ ++ L+ DG+T L A + +++L+ +A + V++ G+T
Sbjct: 203 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262
Query: 598 LHIAMRARSKTIVEVF 613
L IA + K E+
Sbjct: 263 LDIARKKHHKECEELL 278
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
D G +A A D + LLN+GA N+ + + L A IV+ LL
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDG-DTPLLKAVKTRNLEAI 577
+D + TA+Y AV+ GN +KL + N L K G T AV ++ +
Sbjct: 86 LDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIV 145
Query: 578 QMLI 581
+
Sbjct: 146 SYFL 149
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589
+A Y A+ NV ++ LL A + + + PL +A + + +++L+ +
Sbjct: 33 SASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQ 90
Query: 590 VDKRGDTVLHIAMRARSKTIVEVFIR 615
D +G+T L+ A+ + + V++F++
Sbjct: 91 FDDKGNTALYYAVDSGNXQTVKLFVK 116
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 24/110 (21%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKD-------------GDTPLLKAVKTRNLEA 576
+A++ A+EK ++ +KLL+ D+ + G+ PL A T+ +
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 577 IQMLID---KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILL 623
+ L++ + A + A D G+TVLH +V + +P+N+ L+
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLH--------ALVMIADNSPENSALV 193
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 24/110 (21%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKD-------------GDTPLLKAVKTRNLEA 576
+A++ A+EK ++ +KLL+ D+ + G+ PL A T+ +
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 577 IQMLID---KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILL 623
+ L++ + A + A D G+TVLH +V + +P+N+ L+
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLH--------ALVMIADNSPENSALV 206
>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
Length = 558
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
LL K+R +EA + + KI + + R VLH+A+R RS T + V
Sbjct: 68 LLDLAKSRGVEAARESMFNGEKINSTEDRA--VLHVALRNRSNTPIVV 113
>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
Length = 557
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
LL K+R +EA + + KI + + R VLH+A+R RS T + V
Sbjct: 67 LLDLAKSRGVEAARESMFNGEKINSTEDRA--VLHVALRNRSNTPIVV 112
>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
Length = 557
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
LL K+R +EA + + KI + + R VLH+A+R RS T + V
Sbjct: 67 LLDLAKSRGVEAARESMFNGEKINSTEDRA--VLHVALRNRSNTPIVV 112
>pdb|2CVP|A Chain A, Crystal Structure Of Mouse Amf
pdb|2CVP|B Chain B, Crystal Structure Of Mouse Amf
pdb|2CXN|A Chain A, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXN|B Chain B, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXO|A Chain A, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXO|B Chain B, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXP|A Chain A, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXP|B Chain B, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXQ|A Chain A, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXQ|B Chain B, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXR|A Chain A, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXR|B Chain B, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXS|A Chain A, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXS|B Chain B, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXT|A Chain A, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXT|B Chain B, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXU|A Chain A, Crystal Structure Of Mouse Amf / M6p Complex
pdb|2CXU|B Chain B, Crystal Structure Of Mouse Amf / M6p Complex
Length = 557
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
L++ K+R +EA + + +KI + R VLH+A+R RS T ++V
Sbjct: 68 LVELAKSRGVEAARDNMFSGSKINYTEDRA--VLHVALRNRSNTPIKV 113
>pdb|1U0E|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0E|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0F|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0F|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0G|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
pdb|1U0G|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
Length = 564
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEV 612
L++ K+R +EA + + +KI + R VLH+A+R RS T ++V
Sbjct: 68 LVELAKSRGVEAARDNMFSGSKINYTEDRA--VLHVALRNRSNTPIKV 113
>pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
pdb|2QRK|A Chain A, Crystal Structure Of Amp-Bound Saccharopine Dehydrogenase
(L-Lys Forming) From Saccharomyces Cerevisiae
pdb|2QRL|A Chain A, Crystal Structure Of Oxalylglycine-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 47 RKLSDALNVTDANDQRSTTRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDL 106
+ ++ N+ N+ R ++D + + +YT N P + + TA P L
Sbjct: 275 KPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKL 334
Query: 107 EIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENK 146
+ + D + SL R + + D L SL+ + K
Sbjct: 335 SVIS-----IDHLPSLLPREASEFFSHDLLPSLELLPQRK 369
>pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine
Dehydrogenase From Saccharomyces Cerevisiae.
pdb|3UH1|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae With Bound Saccharopine And
Nadh
pdb|3UHA|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad.
pdb|3UHA|B Chain B, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad
Length = 373
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 47 RKLSDALNVTDANDQRSTTRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDL 106
+ ++ N+ N+ R ++D + + +YT N P + + TA P L
Sbjct: 254 KPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKL 313
Query: 107 EIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQTFLENK 146
+ + D + SL R + + D L SL+ + K
Sbjct: 314 SVIS-----IDHLPSLLPREASEFFSHDLLPSLELLPQRK 348
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAA 198
+D NG T L AA+ G +S V L+ GAD + P+ + A
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 32/197 (16%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANV---DVAGLYCWTPLLVAT----LGNFTEVVE- 446
+G TPL W ++E+V L+K G+N D G C + + G F +++
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189
Query: 447 ----LLLEYKPNVNALDK----DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN 498
L+LE N L G T + A K Y + +L+ G + Q+R S
Sbjct: 190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAK---YYLDILM---GWIVKKQNRPIQSG 243
Query: 499 LIHAV-----KGGHR--GIVEALLKKYVDVDIPGKERK---TAVYTAVEKGNVPILKLLL 548
K G R I+E L K++ ++ + T + A GN+ I+ LL
Sbjct: 244 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
Query: 549 TANPDLEIATKDGDTPL 565
D IA K G P+
Sbjct: 304 DYGADPFIANKSGLRPV 320
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKD-------------GDTPLLKAVKTRNLEA 576
+A++ A+EK ++ +KLL+ ++ G+ PL A T+ +
Sbjct: 97 SALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDV 156
Query: 577 IQMLID---KKAKITAVDKRGDTVLH 599
+ L++ + A + A D +G+TVLH
Sbjct: 157 VSYLLENPHQPASLQATDSQGNTVLH 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,778,263
Number of Sequences: 62578
Number of extensions: 874777
Number of successful extensions: 4022
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2103
Number of HSP's gapped (non-prelim): 1208
length of query: 651
length of database: 14,973,337
effective HSP length: 105
effective length of query: 546
effective length of database: 8,402,647
effective search space: 4587845262
effective search space used: 4587845262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)