Query psy11819
Match_columns 651
No_of_seqs 313 out of 3917
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 19:47:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 9.6E-67 3.3E-71 528.1 50.6 398 148-619 5-402 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.6E-66 1.2E-70 523.9 46.9 394 179-649 3-396 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 8.7E-46 3E-50 360.4 35.9 303 156-589 24-329 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 1E-44 3.6E-49 352.8 35.3 297 222-620 24-327 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 7.6E-45 2.6E-49 357.4 33.6 325 155-605 22-350 (351)
6 3utm_A Tankyrase-1; tankyrase, 100.0 6.7E-45 2.3E-49 357.8 29.1 225 395-641 123-350 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 5.7E-43 1.9E-47 333.2 31.9 264 289-627 4-283 (285)
8 1wdy_A 2-5A-dependent ribonucl 100.0 1.6E-42 5.5E-47 330.1 33.8 197 396-592 72-284 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-43 3.8E-48 349.0 22.8 208 412-619 149-371 (373)
10 2xai_A ASB-9, ankyrin repeat a 100.0 1.5E-42 5.3E-47 323.5 24.1 250 395-648 2-256 (261)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-42 6.2E-47 340.3 21.8 316 160-586 40-371 (373)
12 3d9h_A CDNA FLJ77766, highly s 100.0 3.4E-41 1.2E-45 318.2 27.3 243 394-641 13-266 (285)
13 3d9h_A CDNA FLJ77766, highly s 100.0 1.3E-40 4.4E-45 314.2 25.3 222 392-617 55-276 (285)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 9E-41 3.1E-45 310.1 23.4 231 389-619 3-248 (253)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 5.7E-41 1.9E-45 311.5 20.5 226 421-649 2-242 (253)
16 3ljn_A Hypothetical protein; a 100.0 1E-40 3.4E-45 328.4 22.5 255 391-647 15-306 (364)
17 3b7b_A Euchromatic histone-lys 100.0 1.1E-39 3.8E-44 300.6 27.2 221 421-644 3-224 (237)
18 2xai_A ASB-9, ankyrin repeat a 100.0 1E-39 3.5E-44 304.3 25.2 250 289-615 2-259 (261)
19 3b7b_A Euchromatic histone-lys 100.0 2.2E-39 7.5E-44 298.6 26.5 225 391-615 6-231 (237)
20 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-39 9.4E-44 299.0 27.0 222 425-649 5-235 (241)
21 1k1a_A B-cell lymphoma 3-encod 100.0 6.2E-40 2.1E-44 303.3 22.1 229 390-618 3-240 (241)
22 4b93_B Ankyrin repeat domain-c 100.0 2.1E-40 7E-45 308.2 15.7 226 394-619 9-244 (269)
23 3aji_A 26S proteasome non-ATPa 100.0 4.8E-39 1.6E-43 295.0 23.5 225 394-618 4-229 (231)
24 4b93_B Ankyrin repeat domain-c 100.0 2.3E-39 8E-44 301.0 20.9 215 425-642 7-230 (269)
25 1oy3_D Transcription factor in 100.0 8.1E-39 2.8E-43 303.7 23.7 252 390-644 3-272 (282)
26 3ljn_A Hypothetical protein; a 100.0 8.1E-40 2.8E-44 322.0 16.9 281 214-586 11-314 (364)
27 3aji_A 26S proteasome non-ATPa 100.0 5.5E-38 1.9E-42 287.9 24.5 219 427-648 4-223 (231)
28 2dzn_A Probable 26S proteasome 100.0 1E-37 3.4E-42 285.7 25.1 214 429-645 2-223 (228)
29 1oy3_D Transcription factor in 100.0 2.2E-38 7.5E-43 300.7 21.5 218 389-606 38-270 (282)
30 2dzn_A Probable 26S proteasome 100.0 1.3E-37 4.3E-42 285.1 23.4 218 396-616 2-227 (228)
31 3eu9_A Huntingtin-interacting 100.0 2.6E-37 8.7E-42 285.9 25.5 227 393-619 6-235 (240)
32 2f8y_A Notch homolog 1, transl 100.0 1.3E-37 4.5E-42 283.7 22.1 213 407-619 2-216 (223)
33 1s70_B 130 kDa myosin-binding 100.0 2.9E-37 9.8E-42 295.4 22.8 240 403-645 5-280 (299)
34 3kea_A K1L; tropism, ANK repea 100.0 1.4E-37 4.8E-42 293.2 17.6 238 393-645 28-267 (285)
35 1s70_B 130 kDa myosin-binding 100.0 1.1E-36 3.6E-41 291.5 20.4 222 395-617 39-287 (299)
36 1sw6_A Regulatory protein SWI6 100.0 4.6E-38 1.6E-42 302.6 10.7 232 394-641 50-327 (327)
37 3eu9_A Huntingtin-interacting 100.0 4.4E-36 1.5E-40 277.6 23.0 225 422-649 2-229 (240)
38 2f8y_A Notch homolog 1, transl 100.0 1.3E-36 4.4E-41 277.2 19.1 207 440-649 2-210 (223)
39 3kea_A K1L; tropism, ANK repea 100.0 1.1E-36 3.6E-41 287.1 18.4 240 267-592 11-252 (285)
40 1ikn_D Protein (I-kappa-B-alph 100.0 8.8E-37 3E-41 280.5 14.2 220 424-644 3-233 (236)
41 1sw6_A Regulatory protein SWI6 100.0 1E-37 3.6E-42 300.2 6.3 200 398-605 99-327 (327)
42 2rfa_A Transient receptor pote 100.0 2.2E-34 7.5E-39 264.0 22.4 204 396-619 3-222 (232)
43 3hra_A Ankyrin repeat family p 100.0 8.7E-34 3E-38 253.7 24.7 191 427-617 3-201 (201)
44 4gpm_A Engineered protein OR26 100.0 3.3E-34 1.1E-38 244.6 20.7 155 465-619 7-161 (169)
45 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-35 3.8E-40 273.2 10.3 213 392-604 4-229 (236)
46 2rfa_A Transient receptor pote 100.0 6.2E-34 2.1E-38 261.0 21.9 181 390-590 31-226 (232)
47 4gpm_A Engineered protein OR26 100.0 1.1E-33 3.8E-38 241.4 20.8 159 431-589 6-164 (169)
48 3hra_A Ankyrin repeat family p 100.0 9.2E-33 3.2E-37 247.1 24.2 191 394-584 3-201 (201)
49 2etb_A Transient receptor pote 100.0 6.1E-34 2.1E-38 265.1 15.3 190 430-619 3-246 (256)
50 2pnn_A Transient receptor pote 100.0 7.2E-34 2.5E-38 267.3 14.0 209 424-634 8-271 (273)
51 2etb_A Transient receptor pote 100.0 4.6E-33 1.6E-37 259.2 16.2 194 395-588 1-248 (256)
52 2pnn_A Transient receptor pote 100.0 4.3E-33 1.5E-37 262.0 14.5 208 391-598 8-271 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 4.8E-32 1.7E-36 253.1 15.4 130 490-619 88-250 (260)
54 4hbd_A KN motif and ankyrin re 100.0 1.3E-31 4.4E-36 250.9 16.3 189 430-618 77-274 (276)
55 2rfm_A Putative ankyrin repeat 100.0 5E-31 1.7E-35 233.4 18.0 163 455-617 28-190 (192)
56 3v30_A DNA-binding protein rfx 100.0 3.9E-31 1.3E-35 229.6 17.0 169 462-633 2-171 (172)
57 3jxi_A Vanilloid receptor-rela 100.0 2.7E-31 9.2E-36 248.0 16.8 195 394-588 3-252 (260)
58 2y1l_E Darpin-8.4; hydrolase-i 100.0 4.9E-30 1.7E-34 221.5 20.5 158 460-617 12-169 (169)
59 3v31_A Ankyrin repeat family A 100.0 3.1E-30 1E-34 222.7 18.2 159 461-619 2-160 (167)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.8E-30 9.7E-35 221.9 17.4 158 461-619 4-162 (162)
61 3v30_A DNA-binding protein rfx 100.0 4.6E-30 1.6E-34 222.8 17.1 168 430-597 3-171 (172)
62 2vge_A RELA-associated inhibit 100.0 5.7E-32 2E-36 244.9 4.6 200 445-648 1-206 (229)
63 1awc_B Protein (GA binding pro 100.0 1.3E-29 4.6E-34 214.8 18.1 150 463-613 3-152 (153)
64 4hbd_A KN motif and ankyrin re 100.0 3.1E-30 1.1E-34 241.5 15.1 189 396-584 76-273 (276)
65 2rfm_A Putative ankyrin repeat 100.0 1E-29 3.4E-34 225.0 17.3 163 422-584 28-190 (192)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.6E-29 5.5E-34 217.1 17.5 157 429-586 5-162 (162)
67 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.7E-29 1.3E-33 216.0 19.8 158 427-584 12-169 (169)
68 2aja_A Ankyrin repeat family p 100.0 6.7E-33 2.3E-37 267.6 -5.5 150 158-316 93-251 (376)
69 3v31_A Ankyrin repeat family A 100.0 7.9E-29 2.7E-33 213.8 19.3 160 428-587 2-161 (167)
70 3f6q_A Integrin-linked protein 100.0 4.3E-29 1.5E-33 218.0 17.0 160 461-620 4-164 (179)
71 2vge_A RELA-associated inhibit 100.0 3.1E-32 1.1E-36 246.6 -3.8 199 412-613 1-207 (229)
72 3twr_A Tankyrase-2; ankyrin re 100.0 2.3E-29 7.7E-34 216.7 14.3 159 459-618 5-164 (165)
73 2aja_A Ankyrin repeat family p 100.0 3.3E-32 1.1E-36 262.8 -4.2 234 396-647 92-366 (376)
74 1ycs_B 53BP2, P53BP2; ankyrin 100.0 8.2E-30 2.8E-34 233.6 11.0 183 460-643 3-194 (239)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.4E-28 4.8E-33 209.7 17.6 153 462-616 2-155 (156)
76 3f6q_A Integrin-linked protein 100.0 1.5E-28 5E-33 214.6 17.6 167 428-594 4-171 (179)
77 1awc_B Protein (GA binding pro 100.0 3.7E-28 1.3E-32 205.9 18.7 150 430-580 3-152 (153)
78 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.9E-30 6.6E-35 237.8 2.2 212 427-641 3-229 (239)
79 3twr_A Tankyrase-2; ankyrin re 100.0 3.1E-28 1.1E-32 209.6 15.5 159 426-585 5-164 (165)
80 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.5E-27 8.7E-32 201.8 17.7 152 430-583 3-155 (156)
81 1d9s_A Cyclin-dependent kinase 99.9 3.7E-27 1.3E-31 195.0 13.2 132 486-618 3-135 (136)
82 1d9s_A Cyclin-dependent kinase 99.9 7.2E-27 2.5E-31 193.2 14.0 134 452-586 2-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 6E-27 2.1E-31 198.9 11.9 140 459-599 9-149 (156)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 6E-27 2.1E-31 198.9 11.8 146 489-638 6-152 (156)
85 3t8k_A Uncharacterized protein 99.9 1.6E-27 5.5E-32 207.0 8.0 156 462-619 6-179 (186)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 3.3E-25 1.1E-29 183.2 14.7 125 493-617 12-136 (136)
87 3t8k_A Uncharacterized protein 99.9 2.3E-26 7.9E-31 199.7 7.2 156 431-588 8-181 (186)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.2E-25 2.8E-29 179.0 16.1 124 495-618 2-125 (126)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-24 4.1E-29 178.0 16.3 126 461-586 1-126 (126)
90 3c5r_A BARD-1, BRCA1-associate 99.9 1E-24 3.5E-29 180.8 14.2 124 523-649 5-128 (137)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 1.6E-24 5.4E-29 179.1 14.6 126 459-584 11-136 (136)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-25 5.9E-30 185.4 8.8 134 485-619 1-134 (137)
93 3aaa_C Myotrophin, protein V-1 99.9 1.1E-23 3.9E-28 170.6 11.6 114 527-643 6-119 (123)
94 2b0o_E UPLC1; arfgap, structur 99.9 1E-23 3.5E-28 198.7 13.0 139 496-643 152-299 (301)
95 3aaa_C Myotrophin, protein V-1 99.9 1.2E-23 4.2E-28 170.4 10.4 113 492-604 4-116 (123)
96 3deo_A Signal recognition part 99.9 2.5E-23 8.6E-28 181.8 12.6 139 460-616 42-181 (183)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-22 4E-27 191.5 17.5 141 461-607 150-299 (301)
98 3ui2_A Signal recognition part 99.9 5E-23 1.7E-27 188.6 12.9 139 460-616 43-182 (244)
99 1dcq_A PYK2-associated protein 99.9 6.4E-22 2.2E-26 184.2 19.0 201 425-640 62-273 (278)
100 3ehr_A Osteoclast-stimulating 99.9 1.9E-23 6.4E-28 189.3 7.8 130 492-621 70-200 (222)
101 3deo_A Signal recognition part 99.9 3.2E-22 1.1E-26 174.7 13.1 140 154-312 41-181 (183)
102 3jue_A Arfgap with coiled-coil 99.9 2.5E-22 8.7E-27 192.9 13.5 122 462-583 199-323 (368)
103 3ehr_A Osteoclast-stimulating 99.9 6.9E-23 2.4E-27 185.6 9.0 136 459-594 70-206 (222)
104 3ui2_A Signal recognition part 99.9 3.7E-22 1.3E-26 182.8 12.2 141 428-586 44-185 (244)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.8E-21 6.3E-26 148.4 12.4 92 527-618 1-92 (93)
106 1dcq_A PYK2-associated protein 99.9 6E-21 2.1E-25 177.7 15.7 190 393-587 63-264 (278)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 8.3E-21 2.8E-25 144.7 12.5 93 494-586 1-93 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.8 6.4E-21 2.2E-25 193.9 15.1 135 463-603 133-276 (497)
109 3jue_A Arfgap with coiled-coil 99.8 1.2E-20 4.1E-25 181.3 14.5 147 493-639 197-346 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-20 4.3E-25 191.7 15.2 135 430-570 133-276 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 9.8E-21 3.4E-25 151.2 9.1 106 492-597 6-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 7.8E-21 2.7E-25 151.8 8.4 109 523-634 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2E-18 6.8E-23 136.0 9.9 91 523-613 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.8E-17 6E-22 130.5 10.6 93 150-242 17-109 (110)
115 4g26_A Pentatricopeptide repea 50.5 61 0.0021 32.2 9.2 82 128-211 113-199 (501)
116 4g26_A Pentatricopeptide repea 38.3 1.3E+02 0.0044 29.9 9.3 88 159-250 110-209 (501)
117 1gp8_A Protein (scaffolding pr 31.9 36 0.0012 19.3 2.2 18 18-35 17-34 (40)
118 3qil_A Clathrin heavy chain 1; 31.8 29 0.001 26.1 2.5 37 4-40 25-61 (125)
119 3mkq_B Coatomer subunit alpha; 24.0 3E+02 0.01 22.5 9.9 94 131-244 45-139 (177)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.6e-67 Score=528.06 Aligned_cols=398 Identities=31% Similarity=0.412 Sum_probs=375.9
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCchHH
Q psy11819 148 TVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPL 227 (651)
Q Consensus 148 ~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~L 227 (651)
..++..+..|+||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus 5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 84 (437)
T 1n11_A 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84 (437)
T ss_dssp ----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCcCCCCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy11819 228 MWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307 (651)
Q Consensus 228 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~ 307 (651)
|+|+..|+.+++++|+++|++++..+..+.|||++|+..|+.+++++|++.+.+....+. .|.|||++|+..|+.++++
T Consensus 85 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 85 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-CCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999998887776 6999999999999999999
Q ss_pred HHHHcCCCcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHHHHHHHcCCCCccchhhhHH
Q psy11819 308 ILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLF 387 (651)
Q Consensus 308 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (651)
+|+++|++++..+
T Consensus 164 ~Ll~~g~~~~~~~------------------------------------------------------------------- 176 (437)
T 1n11_A 164 LLLERDAHPNAAG------------------------------------------------------------------- 176 (437)
T ss_dssp HHHHTTCCTTCCC-------------------------------------------------------------------
T ss_pred HHHhCCCCCCCCC-------------------------------------------------------------------
Confidence 9999999877543
Q ss_pred HHHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy11819 388 VLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALT 467 (651)
Q Consensus 388 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~ 467 (651)
..|.|||+.|+..|+.+++++|+++|.+++..+..+.|||+.|+..++.+++++|+++|++++..+..|.||||
T Consensus 177 ------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 250 (437)
T 1n11_A 177 ------KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250 (437)
T ss_dssp ------SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 55889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11819 468 IACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547 (651)
Q Consensus 468 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 547 (651)
+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|
T Consensus 251 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 330 (437)
T 1n11_A 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330 (437)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 548 LTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 548 l~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|.+.|+.+++++|......
T Consensus 331 l~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~ 402 (437)
T 1n11_A 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402 (437)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred HhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999766544
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-66 Score=523.88 Aligned_cols=394 Identities=29% Similarity=0.374 Sum_probs=368.7
Q ss_pred cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCc
Q psy11819 179 RGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHIS 258 (651)
Q Consensus 179 ~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t 258 (651)
.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||+|+..|+.+++++|+++|++++..+..+.|
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 82 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT 82 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccccchHHHHhchhcC
Q psy11819 259 SLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSE 338 (651)
Q Consensus 259 ~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (651)
||++|+..|+.+++++|+++|++++..+. .|.|||++|+..|+.+++++|++.+.+.+..+
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------------------ 143 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMT------------------ 143 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC------------------
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCC------------------
Confidence 99999999999999999999999988877 79999999999999999999999988765432
Q ss_pred CCCCCcchhchhcccCCCcccchhhHHHHHHHHHHcCCCCccchhhhHHHHHhhcCCCChHHHHHHHcCCHHHHHHHHHc
Q psy11819 339 PGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKA 418 (651)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~ 418 (651)
..|.|||+.|+..|+.+++++|+++
T Consensus 144 -------------------------------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 144 -------------------------------------------------------KKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp -------------------------------------------------------TTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -------------------------------------------------------CCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 4578999999999999999999999
Q ss_pred CCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcH
Q psy11819 419 GANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN 498 (651)
Q Consensus 419 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~ 498 (651)
|++++..+..+.|||+.|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 248 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHH
Q psy11819 499 LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578 (651)
Q Consensus 499 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 578 (651)
||.|+..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.++|+
T Consensus 249 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~ 328 (437)
T 1n11_A 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328 (437)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhcc
Q psy11819 579 MLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQEC 649 (651)
Q Consensus 579 ~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 649 (651)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||+++|.+.++..+++.+
T Consensus 329 ~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~---~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999998 778999999999999999987776543
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8.7e-46 Score=360.39 Aligned_cols=303 Identities=30% Similarity=0.421 Sum_probs=202.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCchHHHHHHHcC
Q psy11819 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDN-DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKG 234 (651)
Q Consensus 156 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~L~~A~~~~ 234 (651)
.|.|+||.||+.|++++|++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++++..+..+.++++.++..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 467899999999999999999999999988765 4899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCcCCCCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy11819 235 HTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314 (651)
Q Consensus 235 ~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~ 314 (651)
...++..+++.+++++..+..|.||+++|+..|+.+++++|+++|++++..... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~-~~~---------------------- 160 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-KED---------------------- 160 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-C------------------------
T ss_pred cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc-ccc----------------------
Confidence 999999998888888888777777777777777777777777766665433220 000
Q ss_pred CcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHHHHHHHcCCCCccchhhhHHHHHhhcC
Q psy11819 315 NVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLS 394 (651)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (651)
. ...+.
T Consensus 161 -~-------------------------------------------------------------------------~~~~~ 166 (337)
T 4g8k_A 161 -Q-------------------------------------------------------------------------ERLRK 166 (337)
T ss_dssp -----------------------------------------------------------------------------CTT
T ss_pred -c-------------------------------------------------------------------------ccccC
Confidence 0 00113
Q ss_pred CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q psy11819 395 YGTTPLVWACRKGHVEIVDILLK-AGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473 (651)
Q Consensus 395 ~~~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 473 (651)
.|.||||.|+..|+.+++++|++ .|++++..+..+.++++.++..+.. .+
T Consensus 167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-----------------------------~~ 217 (337)
T 4g8k_A 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-----------------------------SD 217 (337)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-----------------------------TT
T ss_pred CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-----------------------------cc
Confidence 35667777777776666666664 3566655555555555544322110 00
Q ss_pred cHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q psy11819 474 YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK-YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552 (651)
Q Consensus 474 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 552 (651)
...++++|+++|++++.++..|.||||+|+..|+.+++++|++. |++++.+|.+|.||||+|++.|+.++|++|+++|+
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 297 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 12345555555555555555555555555555555555555553 45555566666666666666666666666666666
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy11819 553 DLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589 (651)
Q Consensus 553 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 589 (651)
++|.. +|||+|+.+|+.++|++|+++||+++.
T Consensus 298 d~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 298 STDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp SSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 55433 366666666666666666666666553
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-44 Score=352.77 Aligned_cols=297 Identities=29% Similarity=0.395 Sum_probs=232.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCcCC-CCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q psy11819 222 GGWSPLMWASYKGHTDTVALLLDKNADVNAHGN-YHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRK 300 (651)
Q Consensus 222 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~ 300 (651)
++.|+|+.|+.+|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++..+. .+.++++.++..
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~~~~~ 102 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK-NGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhcc-CCCchhHHHHhc
Confidence 356777777777777777777777777776654 366777777777777777777777766666655 566666666666
Q ss_pred CCHHHHHHHHHcCCCcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHHHHHHHcCCCCcc
Q psy11819 301 GHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTF 380 (651)
Q Consensus 301 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (651)
+...++..+++.+.+++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d------------------------------------------------------------ 122 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECD------------------------------------------------------------ 122 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBC------------------------------------------------------------
T ss_pred ccchhhHHhhhccchhhhhc------------------------------------------------------------
Confidence 66666666666666554332
Q ss_pred chhhhHHHHHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCC
Q psy11819 381 TFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDK 460 (651)
Q Consensus 381 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 460 (651)
..|.||++.|+..|+.+++++|+++|++++...... .+....+.
T Consensus 123 -------------~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~-----------------------~~~~~~~~ 166 (337)
T 4g8k_A 123 -------------FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK-----------------------EDQERLRK 166 (337)
T ss_dssp -------------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----------------------------CTT
T ss_pred -------------cCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccc-----------------------cccccccC
Confidence 345566666666666666666666666655433211 11233456
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHh-CCCCCcccCCCCCcHHHHHHhcCc----HHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy11819 461 DGCTALTIACKDGYYEIAVLLLN-SGAYINIQDRSGDSNLIHAVKGGH----RGIVEALLKKYVDVDIPGKERKTAVYTA 535 (651)
Q Consensus 461 ~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A 535 (651)
.|.||||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+. ..++++|+++|++++.++..|.||||+|
T Consensus 167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a 246 (337)
T 4g8k_A 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 246 (337)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 79999999999999999999996 599999999999999998776433 4688999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHH
Q psy11819 536 VEKGNVPILKLLLTA-NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614 (651)
Q Consensus 536 ~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll 614 (651)
+..|+.+++++|++. |++++.+|..|+||||+|+..|+.++|++|+++|++++. .+|||+|+.+++.++|++|+
T Consensus 247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll 321 (337)
T 4g8k_A 247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLL 321 (337)
T ss_dssp HHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHH
T ss_pred HHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 899999999999999999999999999999999999875 46999999999999999999
Q ss_pred hCCCCc
Q psy11819 615 RNPKNN 620 (651)
Q Consensus 615 ~~~~~~ 620 (651)
++|+++
T Consensus 322 ~~GA~~ 327 (337)
T 4g8k_A 322 SHGAKE 327 (337)
T ss_dssp HTTCCC
T ss_pred HCcCCC
Confidence 999984
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.6e-45 Score=357.44 Aligned_cols=325 Identities=26% Similarity=0.261 Sum_probs=211.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCchHHHHHHHc
Q psy11819 155 DNGGTALMFAAQKGKLSFVRELVTR-GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYK 233 (651)
Q Consensus 155 ~~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~L~~A~~~ 233 (651)
..+.++||.|+..|+.+.|++|+.. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 3456788888888888888887764 677788888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHhcCCCCCCcCCCCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11819 234 GHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313 (651)
Q Consensus 234 ~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~ 313 (651)
|+.+++++|+++|++++..+..+.|||++|+..|+.+++++|+++|.+++..+. .+.+|+++++..+..+.+.+...
T Consensus 102 g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~~~l~~a~~~~~~~~~~~~~~-- 178 (351)
T 3utm_A 102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPTPELRERLTYEFK-- 178 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCSSHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCcchHHHhhhhhHHHHHhhhc--
Confidence 888888888888888888888888888888888888888888888777776665 57777777766655555554442
Q ss_pred CCcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHHHHHHHcCCCCccchhhhHHHHHhhc
Q psy11819 314 ANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHL 393 (651)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (651)
T Consensus 179 -------------------------------------------------------------------------------- 178 (351)
T 3utm_A 179 -------------------------------------------------------------------------------- 178 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc-
Q psy11819 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD- 472 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~- 472 (651)
..++..++..+..+.++.++..+..... .+..|.||||+|+..
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------~~~~~~t~L~~A~~~~ 222 (351)
T 3utm_A 179 ---GHSLLQAAREADLAKVKKTLALEIINFK---------------------------------QPQSHETALHCAVASL 222 (351)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHTTTCCTTCC---------------------------------CTTTCCCHHHHHHHCC
T ss_pred ---ccHHHHHHHhccHHHHHHHHHhhccccc---------------------------------CCCCCCCHHHHHHHHh
Confidence 1445555666666666666554332222 334455555555555
Q ss_pred --CcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy11819 473 --GYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550 (651)
Q Consensus 473 --~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 550 (651)
+..+++++|+++|++++.++..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 223 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 302 (351)
T 3utm_A 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302 (351)
T ss_dssp STTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 335556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q psy11819 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRAR 605 (651)
Q Consensus 551 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 605 (651)
|++++..|..|+||+++| +.+++++|.+.+.. ....+.+++..|++.|
T Consensus 303 gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 303 GSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAG 350 (351)
T ss_dssp TCCTTCCCTTSCCHHHHS----CHHHHHHHHHC----------------------
T ss_pred CCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccC
Confidence 666666666666666665 44555666554332 2233455666666554
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.7e-45 Score=357.81 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=182.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q psy11819 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY 474 (651)
Q Consensus 395 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 474 (651)
.|.|||+.|+..|+.+++++|+++|++++..+..+.++++.++..+..+.+.+.... +++..++..+.
T Consensus 123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 190 (351)
T 3utm_A 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREAD 190 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhcc
Confidence 356777777777777777777777777777777788888888777777777766542 36788888999
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy11819 475 YEIAVLLLNSGAYINIQDRSGDSNLIHAVKG---GHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551 (651)
Q Consensus 475 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 551 (651)
.+.++.++..+......+..|.||||.|+.. +..+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 270 (351)
T 3utm_A 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270 (351)
T ss_dssp HHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999888776667788899999999999 6689999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCC
Q psy11819 552 PDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGE 631 (651)
Q Consensus 552 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~ 631 (651)
++++..|..|+||||+|+..|+.++|++|+++|++++..|..|.||+++| ..+++++|.+.... ....+.
T Consensus 271 a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~------~~~~~~ 340 (351)
T 3utm_A 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM------RTSDVD 340 (351)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---------------
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc------ccCcce
Confidence 99999999999999999999999999999999999999999999999998 77899999999866 566788
Q ss_pred Cccccccccc
Q psy11819 632 TPYSIDMNNQ 641 (651)
Q Consensus 632 t~l~~a~~~~ 641 (651)
+++..|++.|
T Consensus 341 ~~l~~A~~~g 350 (351)
T 3utm_A 341 YRLLEASKAG 350 (351)
T ss_dssp ----------
T ss_pred eehhhhhccC
Confidence 9999998876
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.7e-43 Score=333.22 Aligned_cols=264 Identities=28% Similarity=0.397 Sum_probs=247.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHH
Q psy11819 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEM 368 (651)
Q Consensus 289 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (651)
.|.++|+.|+..|+.+++++|++.|.+++...
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------------------------------------------------ 35 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------------------------------------------ 35 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------------------------------------------
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCccccc------------------------------------------------
Confidence 36689999999999999999999988876431
Q ss_pred HHHHHcCCCCccchhhhHHHHHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHH
Q psy11819 369 KHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448 (651)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 448 (651)
+..|.||||.|+..|+.+++++|+++|++++..+..+.||||+|+..++.+++++|
T Consensus 36 ------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 91 (285)
T 1wdy_A 36 ------------------------EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91 (285)
T ss_dssp ------------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred ------------------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 24478999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc----------CCCCCcHHHHHHhcCcHHHHHHHHhc-
Q psy11819 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQ----------DRSGDSNLIHAVKGGHRGIVEALLKK- 517 (651)
Q Consensus 449 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~t~l~~A~~~~~~~~v~~Ll~~- 517 (651)
+++|++++..+..|.||||.|+..|+.+++++|+++|++++.. +..|.|||+.|+..|+.+++++|+++
T Consensus 92 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 171 (285)
T 1wdy_A 92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171 (285)
T ss_dssp HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred HHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999887 77899999999999999999999997
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCC
Q psy11819 518 YVDVDIPGKERKTAVYTAVEKGN----VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLID-KKAKITAVDK 592 (651)
Q Consensus 518 ~~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~ 592 (651)
|.+++..+..|.||||+|+..++ .+++++|++.|++++.++..|+||||+|+..|+.+++++|++ .|++++.+|.
T Consensus 172 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~ 251 (285)
T 1wdy_A 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251 (285)
T ss_dssp CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT
T ss_pred CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC
Confidence 99999999999999999999999 999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCC
Q psy11819 593 RGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPN 627 (651)
Q Consensus 593 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 627 (651)
.|.||||+|+..++.+++++|+++|++ ++.+|
T Consensus 252 ~g~t~l~~A~~~~~~~i~~~Ll~~Ga~---~~~~d 283 (285)
T 1wdy_A 252 DGKTALLLAVELKLKKIAELLCKRGAS---TDCGD 283 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSSC---SCCSS
T ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCCC---CCccc
Confidence 999999999999999999999999998 44454
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-42 Score=330.12 Aligned_cols=197 Identities=30% Similarity=0.450 Sum_probs=165.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCC----------CCCCCcH
Q psy11819 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNAL----------DKDGCTA 465 (651)
Q Consensus 396 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~ 465 (651)
|.|||+.|+..|+.+++++|+++|++++..+..+.|||+.|+..++.+++++|+++|++++.. +..|.||
T Consensus 72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 455555555555555555555555555555555666666666666666666666666555554 6789999
Q ss_pred HHHHHHcCcHHHHHHHHhC-CCCCcccCCCCCcHHHHHHhcCc----HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 466 LTIACKDGYYEIAVLLLNS-GAYINIQDRSGDSNLIHAVKGGH----RGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 466 l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
||.|+..|+.+++++|++. |++++..+..|.||||.|+..++ .+++++|+++|++++.++..|.||||+|+..|+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 9999999999999999987 99999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Q psy11819 541 VPILKLLLT-ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDK 592 (651)
Q Consensus 541 ~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~ 592 (651)
.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 999999999 8999999999999999999999999999999999999998874
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-43 Score=348.97 Aligned_cols=208 Identities=26% Similarity=0.357 Sum_probs=184.3
Q ss_pred HHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC---CCC
Q psy11819 412 VDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG---AYI 488 (651)
Q Consensus 412 v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g---~~~ 488 (651)
++.|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++ +++
T Consensus 149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 228 (373)
T 2fo1_E 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228 (373)
T ss_dssp HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh
Confidence 35566788888888888888888888888888888888888888888888888888888888888888888887 788
Q ss_pred cccCCCCCcHHHHHHhcC---cHHHHHHHHhcCCCCCC--------CCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCccc
Q psy11819 489 NIQDRSGDSNLIHAVKGG---HRGIVEALLKKYVDVDI--------PGKERKTAVYTAVEKGNVPILKLLLTAN-PDLEI 556 (651)
Q Consensus 489 ~~~~~~~~t~l~~A~~~~---~~~~v~~Ll~~~~~~~~--------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~ 556 (651)
+..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+ ++++.
T Consensus 229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~ 308 (373)
T 2fo1_E 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308 (373)
T ss_dssp SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence 888888888888888887 78888888888888775 5678999999999999999999999886 99999
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 557 ATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 557 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
.|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+.+|+.+++++|++++++
T Consensus 309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=323.47 Aligned_cols=250 Identities=23% Similarity=0.242 Sum_probs=232.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q psy11819 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY 474 (651)
Q Consensus 395 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 474 (651)
.|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc
Q psy11819 475 YEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDL 554 (651)
Q Consensus 475 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 554 (651)
.+++++|+++|++++. +..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 9999999999999985 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcc-----cccCCCCC
Q psy11819 555 EIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNI-----LLYRPNKA 629 (651)
Q Consensus 555 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~ 629 (651)
+. +..|.||||+|+..++.+++++|+++|++++.+|..|+||+|+|+.+ .+++++|++.+..+. .+.++|..
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~ 237 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCF 237 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTS
T ss_pred CC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHh
Confidence 95 88999999999999999999999999999999999999999999954 469999999977542 24578999
Q ss_pred CCCcccccccccchhhhhc
Q psy11819 630 GETPYSIDMNNQKSILAQE 648 (651)
Q Consensus 630 g~t~l~~a~~~~~~~~~~~ 648 (651)
|+||+|+|.+...+..++.
T Consensus 238 g~t~l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 238 GIQQHHKITKLVLPEDLKQ 256 (261)
T ss_dssp CTTCGGGGGGSSSCHHHHH
T ss_pred chhccccCcccCCcHHHHH
Confidence 9999999998877665554
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-42 Score=340.28 Aligned_cols=316 Identities=18% Similarity=0.173 Sum_probs=208.4
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCchHHHHHHHcCCHHHH
Q psy11819 160 ALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239 (651)
Q Consensus 160 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~L~~A~~~~~~~~v 239 (651)
+|..|+..|+.+.++.+++....+. .-.+++.-+...|+++++++++.. ..+..|.||||+|+..+ .+++
T Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~-~~~~ 109 (373)
T 2fo1_E 40 SLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGS-YAIT 109 (373)
T ss_dssp ---------------------------------------------------------------CCCHHHHHHHSS-SCCC
T ss_pred ccccccCCccccchhhhhhhhcccc----CccccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcCC-chHH
Confidence 5666666777777777766544332 112345556666777777776644 24556777777777744 3566
Q ss_pred HHHHhcCCCCCCcC-CCCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q psy11819 240 ALLLDKNADVNAHG-NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318 (651)
Q Consensus 240 ~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~ 318 (651)
++|+. .+++..+ ..|.||||+|+..|+.+++++|+.. .++.|++.|++++.
T Consensus 110 ~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~--------------------------~~~~ll~~ga~vn~ 161 (373)
T 2fo1_E 110 EPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH--------------------------EAKECIAAGADVNA 161 (373)
T ss_dssp SCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH--------------------------HHHHHHHTCCCTTC
T ss_pred HHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHH--------------------------HHHHHHhcCCCCcC
Confidence 66543 3444444 4566666666666666655555421 23445566766654
Q ss_pred ccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHHHHHHHcCCCCccchhhhHHHHHhhcCCCCh
Q psy11819 319 AGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTT 398 (651)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 398 (651)
.+ ..|.|
T Consensus 162 ~d-------------------------------------------------------------------------~~g~T 168 (373)
T 2fo1_E 162 MD-------------------------------------------------------------------------CDENT 168 (373)
T ss_dssp CC-------------------------------------------------------------------------TTSCC
T ss_pred CC-------------------------------------------------------------------------CCCCC
Confidence 32 44677
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcC---CCCCCCCCCCCcHHHHHHHcC--
Q psy11819 399 PLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK---PNVNALDKDGCTALTIACKDG-- 473 (651)
Q Consensus 399 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~g~t~l~~A~~~~-- 473 (651)
|||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++ .+++..+..|.||||+|+..+
T Consensus 169 pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~ 248 (373)
T 2fo1_E 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred HHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc
Confidence 888888888888888888888888877888888888888888888888888877 678888888888888888887
Q ss_pred -cHHHHHHHHhCCCCCcc--------cCCCCCcHHHHHHhcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHH
Q psy11819 474 -YYEIAVLLLNSGAYINI--------QDRSGDSNLIHAVKGGHRGIVEALLKKY-VDVDIPGKERKTAVYTAVEKGNVPI 543 (651)
Q Consensus 474 -~~~~~~~Ll~~g~~~~~--------~~~~~~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~ 543 (651)
+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++++ .+++..|..|.||||+|+..|+.++
T Consensus 249 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~i 328 (373)
T 2fo1_E 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 328 (373)
T ss_dssp THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred chHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHH
Confidence 78888888888888875 5678999999999999999999999876 9999999999999999999999999
Q ss_pred HHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 544 LKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 544 v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
+++|+++|++++..|..|+|||++|+.+|+.++|++|+++|++
T Consensus 329 v~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 329 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999876
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=318.16 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=206.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcC-----------CCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC
Q psy11819 394 SYGTTPLVWACRKGHVEIVDILLKAG-----------ANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~v~~Ll~~~-----------~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g 462 (651)
..+.|++|+|+..|+.+.+..++..+ ...+..+..|+||||.|+..|+.+++++|++.|++++..+..|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 92 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 55889999999999987777765432 2245678899999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Q psy11819 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVP 542 (651)
Q Consensus 463 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~ 542 (651)
.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+ +|.||||+|+..|+.+
T Consensus 93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~ 171 (285)
T 3d9h_A 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVE 171 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHH
T ss_pred CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999988644 5999999999999999
Q ss_pred HHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCccc
Q psy11819 543 ILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNIL 622 (651)
Q Consensus 543 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~ 622 (651)
++++|++.|++++..|..|.||||+|+..|+.++|++|++.|++++. |..|.||||+|+..++.+++++|+++|.+
T Consensus 172 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad--- 247 (285)
T 3d9h_A 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD--- 247 (285)
T ss_dssp HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence 99999999999999999999999999999999999999999999995 89999999999999999999999999998
Q ss_pred ccCCCCCCCCccccccccc
Q psy11819 623 LYRPNKAGETPYSIDMNNQ 641 (651)
Q Consensus 623 ~~~~~~~g~t~l~~a~~~~ 641 (651)
++.+|..|+||||+|.++.
T Consensus 248 ~~~~d~~g~t~l~~A~~~~ 266 (285)
T 3d9h_A 248 TQAKNAEGKRPVELVPPES 266 (285)
T ss_dssp TTCCCTTSCCGGGGSCTTS
T ss_pred CCCcCCCCCCHHHHhcCcc
Confidence 7889999999999999543
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=314.17 Aligned_cols=222 Identities=25% Similarity=0.316 Sum_probs=213.0
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy11819 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACK 471 (651)
Q Consensus 392 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~ 471 (651)
.+..|.||||.|+..|+.+++++|++.|++++..+..|+||||+|+..++.+++++|+++|++++..+..|.||||+|+.
T Consensus 55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134 (285)
T ss_dssp SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy11819 472 DGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551 (651)
Q Consensus 472 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 551 (651)
.|+.+++++|+++|++++..+ .|.||||.|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|
T Consensus 135 ~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 135 SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp HTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 999999999999999988654 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCC
Q psy11819 552 PDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNP 617 (651)
Q Consensus 552 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~ 617 (651)
++++. +..|.||||+|+..++.+++++|+++|++++.+|..|+|||++|+ ++.+++++|++++
T Consensus 214 a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 214 ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 99995 889999999999999999999999999999999999999999999 5679999999984
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9e-41 Score=310.14 Aligned_cols=231 Identities=22% Similarity=0.248 Sum_probs=183.5
Q ss_pred HHhhcCCCChHHHHHHHcC-------------CHHHHHHHHHcCCCCCC-cCcCCChHHHHHHhcCcHHHHHHHHhcCCC
Q psy11819 389 LVMHLSYGTTPLVWACRKG-------------HVEIVDILLKAGANVDV-AGLYCWTPLLVATLGNFTEVVELLLEYKPN 454 (651)
Q Consensus 389 ~~~~~~~~~t~l~~A~~~~-------------~~~~v~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~ 454 (651)
++.++..|.||||.|+..| +.+++++|++.|.+++. .+..|+||||+|+..++.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3456788999999999977 89999999999998865 478999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy11819 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGA-YINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533 (651)
Q Consensus 455 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~ 533 (651)
++..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHH
Q psy11819 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613 (651)
Q Consensus 534 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~L 613 (651)
+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.+|+.+++++|
T Consensus 163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC
Q psy11819 614 IRNPKN 619 (651)
Q Consensus 614 l~~~~~ 619 (651)
......
T Consensus 243 ~~~~~~ 248 (253)
T 1yyh_A 243 DLEHHH 248 (253)
T ss_dssp HC----
T ss_pred HHHhhh
Confidence 987654
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.7e-41 Score=311.49 Aligned_cols=226 Identities=23% Similarity=0.297 Sum_probs=183.4
Q ss_pred CCCCcCcCCChHHHHHHhcC-------------cHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q psy11819 421 NVDVAGLYCWTPLLVATLGN-------------FTEVVELLLEYKPNVNA-LDKDGCTALTIACKDGYYEIAVLLLNSGA 486 (651)
Q Consensus 421 ~~~~~~~~~~t~l~~a~~~~-------------~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~ 486 (651)
+++.++..|+||||+|+..| +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 67888999999999999977 89999999999999865 48899999999999999999999999999
Q ss_pred CCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy11819 487 YINIQDRSGDSNLIHAVKGGHRGIVEALLKKYV-DVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565 (651)
Q Consensus 487 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L 565 (651)
+++..+..|.||||+|+..++.+++++|++++. +++..+..|.||||+|+..++.+++++|++.|++++..|..|+|||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhh
Q psy11819 566 LKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSIL 645 (651)
Q Consensus 566 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 645 (651)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++ ++.+|..|+||+|+|.++++..+
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccCCCCHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999998 77899999999999999999998
Q ss_pred hhcc
Q psy11819 646 AQEC 649 (651)
Q Consensus 646 ~~~~ 649 (651)
++.+
T Consensus 239 ~~~l 242 (253)
T 1yyh_A 239 VRLL 242 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-40 Score=328.44 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=235.7
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy11819 391 MHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIAC 470 (651)
Q Consensus 391 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~ 470 (651)
..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++. .+|.||||+|+
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~ 92 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAV 92 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999999996644 47999999999
Q ss_pred HcCcHHHHHHHHhC----CCCCcc-----------------cCCCCCcHHHHHHhcC--cHHHHHHHHhcCCCCCCCCCC
Q psy11819 471 KDGYYEIAVLLLNS----GAYINI-----------------QDRSGDSNLIHAVKGG--HRGIVEALLKKYVDVDIPGKE 527 (651)
Q Consensus 471 ~~~~~~~~~~Ll~~----g~~~~~-----------------~~~~~~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~ 527 (651)
..|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|+++|++++..+..
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 99999999999998 888877 8889999999999999 999999999999999999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11819 528 RKTAVYTAVEKGNVPILKLLLTANPD-----LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAM 602 (651)
Q Consensus 528 g~t~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 602 (651)
|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..|+.++|++|+++|++++..|..|.||||+|+
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhCCCCcc---------cccCCCCCCCCcccccccccchhhhh
Q psy11819 603 RARSKTIVEVFIRNPKNNI---------LLYRPNKAGETPYSIDMNNQKSILAQ 647 (651)
Q Consensus 603 ~~~~~~~~~~Ll~~~~~~~---------~~~~~~~~g~t~l~~a~~~~~~~~~~ 647 (651)
..|+.+++++|+++++... .....+..|+||++.|...+....+.
T Consensus 253 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~ 306 (364)
T 3ljn_A 253 RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306 (364)
T ss_dssp HTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHH
T ss_pred HhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHH
Confidence 9999999999999976421 12236788999999999998765544
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-39 Score=300.55 Aligned_cols=221 Identities=26% Similarity=0.359 Sum_probs=151.3
Q ss_pred CCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHH
Q psy11819 421 NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLI 500 (651)
Q Consensus 421 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 500 (651)
+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||+
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 44555666666666666666666666666666666666666666777776666666777776666666666666667777
Q ss_pred HHHhcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q psy11819 501 HAVKGGHRGIVEALLKKY-VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQM 579 (651)
Q Consensus 501 ~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 579 (651)
.|+..|+.+++++|++++ .+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 777666777777776666 5666666666677777777777777777777766666666666777777777777777777
Q ss_pred HHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchh
Q psy11819 580 LIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644 (651)
Q Consensus 580 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~ 644 (651)
|++.|++++..|..|.||||+|+..++.+++++|+++|.+ ++.+|..|+||||+|..+++..
T Consensus 163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHSCTTCHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC---CCccCCCCCCHHHHHHHHHHHH
Confidence 7777777666666677777777777777777777766666 5556666777777776666653
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=304.34 Aligned_cols=250 Identities=22% Similarity=0.276 Sum_probs=229.9
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHH
Q psy11819 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEM 368 (651)
Q Consensus 289 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (651)
.|+|||++|+..|+.+++++|++.|++++..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------------------------------------------------ 33 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT------------------------------------------------ 33 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCC------------------------------------------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC------------------------------------------------
Confidence 48899999999999999999999998877543
Q ss_pred HHHHHcCCCCccchhhhHHHHHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHH
Q psy11819 369 KHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448 (651)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 448 (651)
..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|
T Consensus 34 -------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 88 (261)
T 2xai_A 34 -------------------------ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88 (261)
T ss_dssp -------------------------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred -------------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5588999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC
Q psy11819 449 LEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528 (651)
Q Consensus 449 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g 528 (651)
+++|++++. +.+|.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|+++|++++. +..|
T Consensus 89 l~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g 166 (261)
T 2xai_A 89 LQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQ 166 (261)
T ss_dssp HHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTT
T ss_pred HHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCC
Confidence 999999875 45699999999999999999999999999999999999999999999999999999999999995 8899
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--------CcccCCCCCcHHHH
Q psy11819 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK--------ITAVDKRGDTVLHI 600 (651)
Q Consensus 529 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------~~~~d~~g~t~l~~ 600 (651)
.||||+|+..++.+++++|+++|++++.+|..|+||||+|+.++ +++++|++++.. ++.+|..|.|++|.
T Consensus 167 ~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~ 244 (261)
T 2xai_A 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHK 244 (261)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGG
T ss_pred CChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhcccc
Confidence 99999999999999999999999999999999999999999655 589999998775 44679999999999
Q ss_pred HHHcCChHHHHHHHh
Q psy11819 601 AMRARSKTIVEVFIR 615 (651)
Q Consensus 601 A~~~~~~~~~~~Ll~ 615 (651)
|.+....+.++-++.
T Consensus 245 ~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 245 ITKLVLPEDLKQFLL 259 (261)
T ss_dssp GGGSSSCHHHHHHHT
T ss_pred CcccCCcHHHHHHHh
Confidence 999888877776653
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.2e-39 Score=298.56 Aligned_cols=225 Identities=31% Similarity=0.426 Sum_probs=216.8
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy11819 391 MHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIAC 470 (651)
Q Consensus 391 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~ 470 (651)
.++..|.|||+.|+..|+.+++++|+++|++++..+..|.|||+.|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhCC-CCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11819 471 KDGYYEIAVLLLNSG-AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549 (651)
Q Consensus 471 ~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 549 (651)
..|+.+++++|+++| .+++..+..|.|||+.|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 165 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHh
Q psy11819 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR 615 (651)
Q Consensus 550 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~ 615 (651)
.|++++..|..|.||||+|+..++.+++++|+++|++++.+|+.|.||||+|+.+++.+.+..+++
T Consensus 166 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876665554
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-39 Score=299.02 Aligned_cols=222 Identities=23% Similarity=0.255 Sum_probs=157.9
Q ss_pred cCcCCChHHHHHHhcCcHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHH
Q psy11819 425 AGLYCWTPLLVATLGNFTEVVELLLE----YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLI 500 (651)
Q Consensus 425 ~~~~~~t~l~~a~~~~~~~~~~~Ll~----~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 500 (651)
++..|.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 44555666666666666666666654 56666666777777777777777777777777777777777777777777
Q ss_pred HHHhcCcHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHH
Q psy11819 501 HAVKGGHRGIVEALLKKYV----DVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT-KDGDTPLLKAVKTRNLE 575 (651)
Q Consensus 501 ~A~~~~~~~~v~~Ll~~~~----~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~ 575 (651)
+|+..++.+++++|++++. +++..+..|.||||+|+..++.+++++|++.|++++..+ ..|.||||+|+..|+.+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 7777777777777777665 666667777777777777777777777777777777666 66777777777777777
Q ss_pred HHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhcc
Q psy11819 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQEC 649 (651)
Q Consensus 576 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 649 (651)
++++|+++|++++..|..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|...++..+++.+
T Consensus 165 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 77777777777777777777777777777777777777777776 556777777777777777777766653
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=6.2e-40 Score=303.35 Aligned_cols=229 Identities=26% Similarity=0.321 Sum_probs=214.1
Q ss_pred HhhcCCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcH
Q psy11819 390 VMHLSYGTTPLVWACRKGHVEIVDILLK----AGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTA 465 (651)
Q Consensus 390 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~ 465 (651)
+..+..|.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3456889999999999999999999997 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCC----CCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCC
Q psy11819 466 LTIACKDGYYEIAVLLLNSGA----YINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG-KERKTAVYTAVEKGN 540 (651)
Q Consensus 466 l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~ 540 (651)
||+|+..|+.+++++|++.++ +++..+..|.||||.|+..++.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 888999999999999999999999999999999999988 889999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCC
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 618 (651)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.++++.|.+.++
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998764
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=308.15 Aligned_cols=226 Identities=21% Similarity=0.268 Sum_probs=171.8
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCC--------CCCcCcCCChHHHHHHhcCcH-HHHHHHHhcCCCCCCCCCCCCc
Q psy11819 394 SYGTTPLVWACRKGHVEIVDILLKAGAN--------VDVAGLYCWTPLLVATLGNFT-EVVELLLEYKPNVNALDKDGCT 464 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~--------~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~g~t 464 (651)
..+.++|+.|+..|+.++|++|++.|.+ ++..+..+.+||+.|+..+.. .+++.|++.|++++..+.+|.|
T Consensus 9 ~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~T 88 (269)
T 4b93_B 9 YREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSS 88 (269)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCC
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCC
Confidence 4466899999999999999999998865 345567788999998876654 5788999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy11819 465 ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544 (651)
Q Consensus 465 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v 544 (651)
|||+|+..|+.+++++|++.|++++..+..|.||++.|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 89 pLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v 168 (269)
T 4b93_B 89 PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELV 168 (269)
T ss_dssp HHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-hHHHHHHHhCCCC
Q psy11819 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS-KTIVEVFIRNPKN 619 (651)
Q Consensus 545 ~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-~~~~~~Ll~~~~~ 619 (651)
++|+++|+++|..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+++++ .+++++|...+..
T Consensus 169 ~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 169 ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred HHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999999999999999999999987765 3444444444443
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.8e-39 Score=295.00 Aligned_cols=225 Identities=24% Similarity=0.272 Sum_probs=206.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q psy11819 394 SYGTTPLVWACRKGHVEIVDILLKAGAN-VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD 472 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 472 (651)
..+.++|+.|+..|+.+.+++|++.+.. ++..+..+.||||.|+..++.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 4467999999999999999999987643 566788899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q psy11819 473 GYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP 552 (651)
Q Consensus 473 ~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 552 (651)
|+.+++++|+++|++++..+..|.||||.|+..++.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCC
Q psy11819 553 DLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618 (651)
Q Consensus 553 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 618 (651)
+++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|.++++
T Consensus 164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 999999999999999999999999999999999999999999999999999999999999988764
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=301.04 Aligned_cols=215 Identities=25% Similarity=0.302 Sum_probs=178.4
Q ss_pred cCcCCChHHHHHHhcCcHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHcCcH-HHHHHHHhCCCCCcccCCCC
Q psy11819 425 AGLYCWTPLLVATLGNFTEVVELLLEYKPN--------VNALDKDGCTALTIACKDGYY-EIAVLLLNSGAYINIQDRSG 495 (651)
Q Consensus 425 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--------~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~g~~~~~~~~~~ 495 (651)
+|..+.++|+.|+..|+.+++++|++.|.+ ++..+..+.|||+.|+..+.. .++++|++.|++++..|.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 455667899999999999999999998875 455667889999999988775 48899999999999999999
Q ss_pred CcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q psy11819 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575 (651)
Q Consensus 496 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 575 (651)
.||||+|+..|+.+++++|++.|++++..+.+|.||+++|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccc
Q psy11819 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQK 642 (651)
Q Consensus 576 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 642 (651)
+|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|.++++
T Consensus 167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999998 78899999999999998887
No 25
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8.1e-39 Score=303.69 Aligned_cols=252 Identities=20% Similarity=0.168 Sum_probs=200.3
Q ss_pred HhhcCCCChHHHHHHHcCCHHHHHHHHHcCCC---CCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy11819 390 VMHLSYGTTPLVWACRKGHVEIVDILLKAGAN---VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTAL 466 (651)
Q Consensus 390 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l 466 (651)
+..+..|.||||.|+..|+.+++++|++.|++ ++..+..|+||||+|+..++.+++++|+++|++++..+..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45688899999999999999999999999988 788899999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhCCCCCcccC-------------CCCCcHHHHHHhcCcHH-HHHHHHhcCCCCCCCCCCCCCHH
Q psy11819 467 TIACKDGYYEIAVLLLNSGAYINIQD-------------RSGDSNLIHAVKGGHRG-IVEALLKKYVDVDIPGKERKTAV 532 (651)
Q Consensus 467 ~~A~~~~~~~~~~~Ll~~g~~~~~~~-------------~~~~t~l~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~g~t~l 532 (651)
|+|+..|+.+++++|+++|++..... ..+.++++.+...+... ....+...+.+++..+..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 99999999999999999987654221 23445555555544433 34444456778899999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHH
Q psy11819 533 YTAVEKGNVPILKLLLTANPDLEIATKD-GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVE 611 (651)
Q Consensus 533 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~ 611 (651)
|+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 9999999999999999999999998854 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccCCCCCCCCcccccccccchh
Q psy11819 612 VFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644 (651)
Q Consensus 612 ~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~ 644 (651)
+|+++|++ ++.+|..|.||+++|.......
T Consensus 243 ~Ll~~ga~---~~~~~~~g~tpl~~a~~~~~~~ 272 (282)
T 1oy3_D 243 LLRAHGAP---EPEDGGDKLSPCSSSGSDSDSD 272 (282)
T ss_dssp HHHHTTCC---CCCCC-----------------
T ss_pred HHHHcCCC---cCcCCCcccccccccCCccccc
Confidence 99999999 7889999999999998876543
No 26
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.1e-40 Score=321.98 Aligned_cols=281 Identities=18% Similarity=0.202 Sum_probs=190.4
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCH
Q psy11819 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTP 293 (651)
Q Consensus 214 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 293 (651)
.+.+..|..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.+.+.+.. .|.||
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~ 87 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW---HGQKP 87 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB---TTBCH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc---CCCCH
Confidence 345667788899999999999999999999999999988888888999988888888888888888855442 47788
Q ss_pred HHHHHHcCCHHHHHHHHHc----CCCcccccccccccchHHHHhchhcCCCCCCcchhchhcccCCCcccchhhHHHHHH
Q psy11819 294 LVWACRKGHVEIVDILLKA----GANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMK 369 (651)
Q Consensus 294 l~~a~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (651)
|++|+..|+.+++++|++. |.+++..
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------------------------------------------- 117 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESL-------------------------------------------------- 117 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHH--------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHH--------------------------------------------------
Confidence 8888888888888888876 3322100
Q ss_pred HHHHcCCCCccchhhhHHHHHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcC--cHHHHHH
Q psy11819 370 HFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGN--FTEVVEL 447 (651)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ 447 (651)
...+.... -...+++..+..+.||||+|+..+ +.+++++
T Consensus 118 -------------------------------~~~~~~~~--------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 118 -------------------------------LNECDERE--------VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp -------------------------------HTCCCCCC--------EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred -------------------------------HhhcchHh--------hhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence 00000000 001123335556667777777776 6777777
Q ss_pred HHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC-----CcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCC
Q psy11819 448 LLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY-----INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522 (651)
Q Consensus 448 Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~ 522 (651)
|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 159 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN 238 (364)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 7777777776777777777777777777777777776666 66666667777777777777777777777777777
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEI------------ATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 523 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
..|..|.||||+|+..|+.+++++|+++|++++. .+..++||++.|+..++.+.+..|+..+++
T Consensus 239 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 239 MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314 (364)
T ss_dssp CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHH
Confidence 6666777777777777777777777766654322 344566666666666666666666655443
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.5e-38 Score=287.93 Aligned_cols=219 Identities=24% Similarity=0.265 Sum_probs=209.3
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc
Q psy11819 427 LYCWTPLLVATLGNFTEVVELLLEYKPN-VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKG 505 (651)
Q Consensus 427 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 505 (651)
..+.+||+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 3567999999999999999999987654 677789999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy11819 506 GHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585 (651)
Q Consensus 506 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 585 (651)
|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhc
Q psy11819 586 KITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQE 648 (651)
Q Consensus 586 ~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 648 (651)
+++.+|..|.||||+|+..++.+++++|+++|.+ ++.+|..|+||+|+|.+.++..+++.
T Consensus 164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~l 223 (231)
T 3aji_A 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQVAKGGLGLILKRL 223 (231)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999998 77899999999999999988877764
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-37 Score=285.72 Aligned_cols=214 Identities=22% Similarity=0.222 Sum_probs=145.3
Q ss_pred CChHHHHHHhcCcHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhCC--CCCcc-cCCCCCcHHHHHHh
Q psy11819 429 CWTPLLVATLGNFTEVVELLLEYKPNVNA-LDKDGCTALTIACKDGYYEIAVLLLNSG--AYINI-QDRSGDSNLIHAVK 504 (651)
Q Consensus 429 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~g--~~~~~-~~~~~~t~l~~A~~ 504 (651)
|.||||.|+..++.+++++|++.+.+... .+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 34566666666666666666666555433 5666667777777777777777777766 44444 55666777777777
Q ss_pred cCcHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy11819 505 GGHRGIVEALLKKY--VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLID 582 (651)
Q Consensus 505 ~~~~~~v~~Ll~~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 582 (651)
.|+.+++++|+++| .+++..+..|.||||+|+..++.+++++|+++|++++..+..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 77777777777766 6666666777777777777777777777777777777777777777777777777777777777
Q ss_pred cC-CCCcccCCCCCcHHHHHHHcCChHHHHHHH-hCCCCcccccCCCCCCCCcccccccccchhh
Q psy11819 583 KK-AKITAVDKRGDTVLHIAMRARSKTIVEVFI-RNPKNNILLYRPNKAGETPYSIDMNNQKSIL 645 (651)
Q Consensus 583 ~g-a~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 645 (651)
.| ++++.+|..|+||||+|+..++.+++++|+ +.|++ ++.+|..|+||+|+|.+.+..++
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~---~~~~~~~g~t~l~~A~~~~~~~~ 223 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNEQVKKF 223 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---SCCBCTTSCBGGGGCSSTTHHHH
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC---CCccCCCCCcHHHHHHHHHHHHH
Confidence 77 777777777777777777777777777777 66666 55667777777777766654443
No 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.2e-38 Score=300.70 Aligned_cols=218 Identities=22% Similarity=0.140 Sum_probs=170.5
Q ss_pred HHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCC----------
Q psy11819 389 LVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNAL---------- 458 (651)
Q Consensus 389 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~---------- 458 (651)
++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++++....
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 117 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence 4566788999999999999999999999999999999999999999999999999999999998764322
Q ss_pred ---CCCCCcHHHHHHHcCcH-HHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCC-CCCHHH
Q psy11819 459 ---DKDGCTALTIACKDGYY-EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKE-RKTAVY 533 (651)
Q Consensus 459 ---~~~g~t~l~~A~~~~~~-~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~l~ 533 (651)
...+.++++.+...+.. .....+...+.+++..+..|.||||.|+..|+.+++++|+++|++++..+.. |.||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~ 197 (282)
T 1oy3_D 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197 (282)
T ss_dssp --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence 12344556555554433 3444555668889999999999999999999999999999999999998865 999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy11819 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606 (651)
Q Consensus 534 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 606 (651)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|....+
T Consensus 198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.3e-37 Score=285.06 Aligned_cols=218 Identities=23% Similarity=0.290 Sum_probs=205.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCC-cCcCCChHHHHHHhcCcHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHHH
Q psy11819 396 GTTPLVWACRKGHVEIVDILLKAGANVDV-AGLYCWTPLLVATLGNFTEVVELLLEYK--PNVNA-LDKDGCTALTIACK 471 (651)
Q Consensus 396 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~-~~~~g~t~l~~A~~ 471 (651)
|.|||+.|+..|+.+++++|++.+.++.. .+..|.||||+|+..++.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 67999999999999999999999877654 7889999999999999999999999999 66666 78899999999999
Q ss_pred cCcHHHHHHHHhCC--CCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11819 472 DGYYEIAVLLLNSG--AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549 (651)
Q Consensus 472 ~~~~~~~~~Ll~~g--~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 549 (651)
.|+.+++++|+++| ++++..+..|.||||.|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhC
Q psy11819 550 AN-PDLEIATKDGDTPLLKAVKTRNLEAIQMLI-DKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616 (651)
Q Consensus 550 ~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ 616 (651)
.| ++++..|..|+||||+|+..|+.+++++|+ +.|++++.+|..|.||+++|++ .+++++|+++
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---~~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS---TTHHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH---HHHHHHHHhc
Confidence 99 999999999999999999999999999999 8899999999999999999965 4778888764
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=285.87 Aligned_cols=227 Identities=26% Similarity=0.282 Sum_probs=216.0
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHH
Q psy11819 393 LSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDK-DGCTALTIACK 471 (651)
Q Consensus 393 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~A~~ 471 (651)
+..+.++|+.|+..|+.+++++|++.|++++..+..+.|||+.|+..++.+++++|+++|.+++.... .|.||||.|+.
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999998876654 49999999999
Q ss_pred cCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhc
Q psy11819 472 DGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN-VPILKLLLTA 550 (651)
Q Consensus 472 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~ 550 (651)
.|+.+++++|+++|++++..+..|.|||+.|+..++.+++++|+++|++++..+..|.||||+|+..++ .+++++|++.
T Consensus 86 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~ 165 (240)
T 3eu9_A 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165 (240)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999997666 8999999999
Q ss_pred CCCccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 551 NPDLEIATK-DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 551 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
|++++..+. .|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+++++.
T Consensus 166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 999999987 999999999999999999999999999999999999999999999999999999999876
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-37 Score=283.73 Aligned_cols=213 Identities=21% Similarity=0.227 Sum_probs=204.0
Q ss_pred CCHHHHHHHHHcCCCCCCc-CcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q psy11819 407 GHVEIVDILLKAGANVDVA-GLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSG 485 (651)
Q Consensus 407 ~~~~~v~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 485 (651)
|+.+++++|+++|.+++.. +..+.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 5678899999999998765 789999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcH
Q psy11819 486 A-YINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTP 564 (651)
Q Consensus 486 ~-~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~ 564 (651)
. +++..+..|.||||.|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 7 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 565 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|++++..
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999976
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-37 Score=295.43 Aligned_cols=240 Identities=24% Similarity=0.262 Sum_probs=182.5
Q ss_pred HHHcCCHHHHHHHHHcCCCCCC---------cCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q psy11819 403 ACRKGHVEIVDILLKAGANVDV---------AGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473 (651)
Q Consensus 403 A~~~~~~~~v~~Ll~~~~~~~~---------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 473 (651)
++..++.+.++.++....++.. .+..+.|+|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 84 (299)
T 1s70_B 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84 (299)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 4455555666666655433221 1224456777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CC
Q psy11819 474 YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA-NP 552 (651)
Q Consensus 474 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~ 552 (651)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++++.. +.
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~ 164 (299)
T 1s70_B 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777776665543 33
Q ss_pred Cc--------------------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy11819 553 DL--------------------------EIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606 (651)
Q Consensus 553 ~~--------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 606 (651)
++ ...+..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~ 244 (299)
T 1s70_B 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC
Confidence 32 2356789999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhh
Q psy11819 607 KTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSIL 645 (651)
Q Consensus 607 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 645 (651)
.+++++|+++|.+ ++.+|..|+||||+|.+.....+
T Consensus 245 ~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~~l 280 (299)
T 1s70_B 245 EEACRILVENLCD---MEAVNKVGQTAFDVADEDILGYL 280 (299)
T ss_dssp HHHHHHHHHTTCC---TTCCCTTSCCTTTSCCSGGGHHH
T ss_pred HHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999998 77899999999999987654433
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.4e-37 Score=293.18 Aligned_cols=238 Identities=20% Similarity=0.194 Sum_probs=213.7
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q psy11819 393 LSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD 472 (651)
Q Consensus 393 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 472 (651)
+..|.||||.|+..|+.+++++|++.|++++.. +|+||||+|+..++.+++++|+++|++++..+..|.||||+|+..
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 466899999999999999999999999999877 489999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCcccCCCC-CcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy11819 473 GYYEIAVLLLNSGAYINIQDRSG-DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551 (651)
Q Consensus 473 ~~~~~~~~Ll~~g~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 551 (651)
|+.+++++|+++|++++..+..| .||||.|+..|+.+++++|+++|.+.... ..|.||||+|+..|+.+++++|+++|
T Consensus 106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcC
Confidence 99999999999999999999999 89999999999999999999999876322 28899999999999999999999999
Q ss_pred CCccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCC
Q psy11819 552 PDLEIATKDGDTP-LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAG 630 (651)
Q Consensus 552 ~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g 630 (651)
++++..+..|+|| ||+|+..|+.+++++|+++|++++..|. .|+..++.+++++|+++|.+. .....
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~-----~~~~~ 252 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY-----KSDSY 252 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH-----TTCTT
T ss_pred CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC-----CCccc
Confidence 9999999999998 9999999999999999999999998883 678899999999999999762 22223
Q ss_pred CCcccccccccchhh
Q psy11819 631 ETPYSIDMNNQKSIL 645 (651)
Q Consensus 631 ~t~l~~a~~~~~~~~ 645 (651)
.+.+.++-.++-.++
T Consensus 253 ~~~~~~~~~~~~~~i 267 (285)
T 3kea_A 253 TKDLDIVKNNKLDEI 267 (285)
T ss_dssp TTTCHHHHTCSHHHH
T ss_pred cchHHHHhhhhHHHH
Confidence 344555554444333
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-36 Score=291.47 Aligned_cols=222 Identities=29% Similarity=0.380 Sum_probs=204.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q psy11819 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY 474 (651)
Q Consensus 395 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 474 (651)
.+.|+|+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhc-CCCC--------------------------CCCCCC
Q psy11819 475 YEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK-YVDV--------------------------DIPGKE 527 (651)
Q Consensus 475 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~--------------------------~~~~~~ 527 (651)
.+++++|+++|++++..+..|.|||++|+..++.+++++++.. +.++ ...+..
T Consensus 119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 198 (299)
T 1s70_B 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198 (299)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence 9999999999999999999999999999999999999887763 3332 235678
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCh
Q psy11819 528 RKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607 (651)
Q Consensus 528 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 607 (651)
|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.. ..
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~ 277 (299)
T 1s70_B 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-IL 277 (299)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GG
T ss_pred CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764 45
Q ss_pred HHHHHHHhCC
Q psy11819 608 TIVEVFIRNP 617 (651)
Q Consensus 608 ~~~~~Ll~~~ 617 (651)
+.++.+++..
T Consensus 278 ~~l~~l~~~~ 287 (299)
T 1s70_B 278 GYLEELQKKQ 287 (299)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-38 Score=302.63 Aligned_cols=232 Identities=20% Similarity=0.223 Sum_probs=188.7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc-----------------CcCCChHHHHHHhcCcHHHHHHHHhcCCCCC
Q psy11819 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVA-----------------GLYCWTPLLVATLGNFTEVVELLLEYKPNVN 456 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~-----------------~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~ 456 (651)
..|.++++ |+.+++++|+++|++++.. .....+..+.++..+..+++++|++.|++++
T Consensus 50 ~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn 124 (327)
T 1sw6_A 50 PSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124 (327)
T ss_dssp CCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSC
T ss_pred CCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcc
Confidence 34566655 8899999999999876541 1111223466777778899999999999999
Q ss_pred C-CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCc---HHHHHHHHhcC-CCCCCCCCCCCCH
Q psy11819 457 A-LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH---RGIVEALLKKY-VDVDIPGKERKTA 531 (651)
Q Consensus 457 ~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~---~~~v~~Ll~~~-~~~~~~~~~g~t~ 531 (651)
. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+ .++++.|++.+ .+++..+..|.||
T Consensus 125 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp 204 (327)
T 1sw6_A 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 204 (327)
T ss_dssp SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence 9 89999999999999999999999999999999999999999999999999 67888888875 6789999999999
Q ss_pred HHHHHH----cCCHHHHHHHHhc--------------------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy11819 532 VYTAVE----KGNVPILKLLLTA--------------------NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKI 587 (651)
Q Consensus 532 l~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 587 (651)
||+|+. .|+.+++++|++. |++++..+..|+||||+|+. +++|+++ ++
T Consensus 205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~ 276 (327)
T 1sw6_A 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--ML 276 (327)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TT
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CC
Confidence 999999 8999999999987 88999999999999999995 8999998 68
Q ss_pred cccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCccccccccc
Q psy11819 588 TAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQ 641 (651)
Q Consensus 588 ~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~ 641 (651)
+.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|
T Consensus 277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence 88999999999999999999999999999999 7889999999999999875
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=277.56 Aligned_cols=225 Identities=20% Similarity=0.277 Sum_probs=212.5
Q ss_pred CCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccC-CCCCcHHH
Q psy11819 422 VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD-RSGDSNLI 500 (651)
Q Consensus 422 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~ 500 (651)
++..+..+.++|+.|+..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|++++... ..|.|||+
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 34567788999999999999999999999999999999999999999999999999999999999888655 45999999
Q ss_pred HHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC-HHHHHH
Q psy11819 501 HAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN-LEAIQM 579 (651)
Q Consensus 501 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~ 579 (651)
.|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997766 899999
Q ss_pred HHHcCCCCcccCC-CCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhcc
Q psy11819 580 LIDKKAKITAVDK-RGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQEC 649 (651)
Q Consensus 580 Ll~~ga~~~~~d~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 649 (651)
|++.|++++..+. .|.||||+|+..++.+++++|+++|.+ ++.+|..|+||||+|++.++..+++.+
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999997 999999999999999999999999988 778999999999999999999888754
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-36 Score=277.16 Aligned_cols=207 Identities=22% Similarity=0.268 Sum_probs=196.5
Q ss_pred CcHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcC
Q psy11819 440 NFTEVVELLLEYKPNVNAL-DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518 (651)
Q Consensus 440 ~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~ 518 (651)
|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 5677889999999998776 789999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q psy11819 519 V-DVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTV 597 (651)
Q Consensus 519 ~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 597 (651)
. +++..+..|.||||+|+..++.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 7 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhcc
Q psy11819 598 LHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQEC 649 (651)
Q Consensus 598 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 649 (651)
||+|+..++.+++++|++++++ ++.+|..|+||+|+|++.++..+++.+
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CccccccCCCHHHHHHHhcchHHHHHH
Confidence 9999999999999999999998 678999999999999999999888764
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-36 Score=287.14 Aligned_cols=240 Identities=20% Similarity=0.153 Sum_probs=206.0
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccccchHHHHhchhcCCCCCCcch
Q psy11819 267 GYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLT 346 (651)
Q Consensus 267 ~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (651)
...++.++|.+. +++..+. .|.|||++|+..|+.+++++|+++|++++..
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------------------- 60 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADV-HGHSASYYAIADNNVRLVCTLLNAGALKNLL--------------------------- 60 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---------------------------
T ss_pred CHHHHHHHHHhC--CCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---------------------------
Confidence 345555555554 3455554 6889999999999999999999988876643
Q ss_pred hchhcccCCCcccchhhHHHHHHHHHHcCCCCccchhhhHHHHHhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Q psy11819 347 VGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAG 426 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~ 426 (651)
+|.||||.|+..|+.+++++|+++|++++..+
T Consensus 61 ------------------------------------------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 92 (285)
T 3kea_A 61 ------------------------------------------------ENEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92 (285)
T ss_dssp ------------------------------------------------TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC
T ss_pred ------------------------------------------------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 26799999999999999999999999999999
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc
Q psy11819 427 LYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG-CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKG 505 (651)
Q Consensus 427 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 505 (651)
..|+||||+|+..++.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++... ..|.||||.|+..
T Consensus 93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~ 171 (285)
T 3kea_A 93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN 171 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc
Confidence 999999999999999999999999999999999998 79999999999999999999999866322 2789999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy11819 506 GHRGIVEALLKKYVDVDIPGKERKTA-VYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584 (651)
Q Consensus 506 ~~~~~v~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 584 (651)
|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|+++|++++..+. .|+..|+.++|++|+++|
T Consensus 172 g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcC
Confidence 99999999999999999999999997 9999999999999999999999988873 567789999999999999
Q ss_pred CCCcccCC
Q psy11819 585 AKITAVDK 592 (651)
Q Consensus 585 a~~~~~d~ 592 (651)
+++...+.
T Consensus 245 ~~~~~~~~ 252 (285)
T 3kea_A 245 VEYKSDSY 252 (285)
T ss_dssp HHHTTCTT
T ss_pred CCCCCccc
Confidence 88765543
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.8e-37 Score=280.50 Aligned_cols=220 Identities=19% Similarity=0.185 Sum_probs=189.0
Q ss_pred CcCcCCChHHHHHHhcCcHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHH
Q psy11819 424 VAGLYCWTPLLVATLGNFTEVVELLLEYKP----NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNL 499 (651)
Q Consensus 424 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l 499 (651)
..+..|.||||+|+..++.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356677888888888888888888877654 6788888899999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCC-CCCcHHHHHHHcC
Q psy11819 500 IHAVKGGHRGIVEALLKKYVD------VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATK-DGDTPLLKAVKTR 572 (651)
Q Consensus 500 ~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~ 572 (651)
|+|+..|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 999999999999999998765 467788999999999999999999999999999999997 9999999999999
Q ss_pred CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchh
Q psy11819 573 NLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644 (651)
Q Consensus 573 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~ 644 (651)
+.++|++|+++|++++.+|..|.|||++|+..++.+++++|+++|+++. ...++..|.||++.+....++.
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL-QMLPESEDEESYDTESEFTEFT 233 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG-SSCCCCCTTTCCCCC-------
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh-hcCCccchHHHHhhhccccccc
Confidence 9999999999999999999999999999999999999999999999753 4578999999999988776654
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1e-37 Score=300.16 Aligned_cols=200 Identities=20% Similarity=0.145 Sum_probs=164.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCCC-cCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc--
Q psy11819 398 TPLVWACRKGHVEIVDILLKAGANVDV-AGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY-- 474 (651)
Q Consensus 398 t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-- 474 (651)
+..+.|+..+..+++++|++.|++++. .+..|+||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 445677777777888888889999998 78899999999999999999999999999999999999999999999888
Q ss_pred -HHHHHHHHhCC-CCCcccCCCCCcHHHHHHh----cCcHHHHHHHHhc--------------------CCCCCCCCCCC
Q psy11819 475 -YEIAVLLLNSG-AYINIQDRSGDSNLIHAVK----GGHRGIVEALLKK--------------------YVDVDIPGKER 528 (651)
Q Consensus 475 -~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~~~g 528 (651)
.++++.|++.+ ++++..+..|.||||+|+. .|+.+++++|++. |++++..+..|
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 67777777776 6788889999999999998 8899999999876 88999999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q psy11819 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRAR 605 (651)
Q Consensus 529 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 605 (651)
.||||.|+. +++|++. +++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|
T Consensus 259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 999999985 8999998 68889999999999999999999999999999999999999999999998764
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.2e-34 Score=264.01 Aligned_cols=204 Identities=21% Similarity=0.221 Sum_probs=139.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCC-----CCCCCCCCcHHHHH
Q psy11819 396 GTTPLVWACRKGHVEIVDILLKA-GANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV-----NALDKDGCTALTIA 469 (651)
Q Consensus 396 ~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~g~t~l~~A 469 (651)
|.||||.|+..|+.+++++|++. |++++..+..|+||||+|+..++.+++++|+++|+++ +..+..|.||||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 45555555555555555555554 5555555555555555555555555555555555443 33344455555555
Q ss_pred HHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11819 470 CKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549 (651)
Q Consensus 470 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 549 (651)
+..|+.+++++|+++|++++..+... .+ ....+..+..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~--~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 142 (232)
T 2rfa_A 83 VINQNVNLVRALLARGASVSARATGS--VF------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142 (232)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCSG--GG------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCcccCCc--ce------------------eecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555555444433211 00 01122334579999999999999999999999
Q ss_pred cCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------cccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 550 ANPDLEIATKDGDTPLLKAVKTRNLEAI----QMLIDKKAKI------TAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 550 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~------~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
+|++++..|..|+||||+|+..++.+++ ++|++.|+++ +.+|..|.||||+|+..|+.+++++|++++..
T Consensus 143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999888 9999999987 57899999999999999999999999998865
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8.7e-34 Score=253.74 Aligned_cols=191 Identities=28% Similarity=0.367 Sum_probs=174.6
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc
Q psy11819 427 LYCWTPLLVATLGNFTEVVELLLEYKP-NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKG 505 (651)
Q Consensus 427 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 505 (651)
..+.+||+.|+..++.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 456788899998888888888888775 8888889999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCC-----HHHHH
Q psy11819 506 GHRGIVEALL-KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN-PDLEIATKDGDTPLLKAVKTRN-----LEAIQ 578 (651)
Q Consensus 506 ~~~~~v~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~-----~~~v~ 578 (651)
|+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++.| ++++..+..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 456788999999999999999999999999999998 8999999999999999999988 89999
Q ss_pred HHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCC
Q psy11819 579 MLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNP 617 (651)
Q Consensus 579 ~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~ 617 (651)
+|+++|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999875
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.3e-34 Score=244.63 Aligned_cols=155 Identities=28% Similarity=0.455 Sum_probs=119.6
Q ss_pred HHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy11819 465 ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544 (651)
Q Consensus 465 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v 544 (651)
+|+.|++.|+.+++++|+++|++++.+|..|.|||+.|+..++.+++++|+++|++++.++.+|.||||+|+..|+.+++
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v 86 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 86 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence 57777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 545 ~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+..|+.+++++|+++|++
T Consensus 87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777775
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-35 Score=273.19 Aligned_cols=213 Identities=22% Similarity=0.195 Sum_probs=194.7
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCC----CCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy11819 392 HLSYGTTPLVWACRKGHVEIVDILLKAGA----NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALT 467 (651)
Q Consensus 392 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~ 467 (651)
.+..|.||||.|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 83 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 45779999999999999999999998765 68999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhCCCC------CcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCC
Q psy11819 468 IACKDGYYEIAVLLLNSGAY------INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGK-ERKTAVYTAVEKGN 540 (651)
Q Consensus 468 ~A~~~~~~~~~~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~ 540 (651)
+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 163 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 99999999999999999876 467788899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCcHHHHHHHc
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT--AVDKRGDTVLHIAMRA 604 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~ 604 (651)
.+++++|+++|++++..+..|+|||++|+.+++.+++++|+++|++.. ..+..|.|+.+.+...
T Consensus 164 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 164 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999876 7788888887766543
No 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.2e-34 Score=261.00 Aligned_cols=181 Identities=21% Similarity=0.179 Sum_probs=150.0
Q ss_pred HhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCC-----CCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCc
Q psy11819 390 VMHLSYGTTPLVWACRKGHVEIVDILLKAGANV-----DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCT 464 (651)
Q Consensus 390 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t 464 (651)
+..+..|.||||.|+..|+.+++++|++.|+++ +..+..+.||||+|+..++.+++++|+++|++++..+....
T Consensus 31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~- 109 (232)
T 2rfa_A 31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSV- 109 (232)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG-
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc-
Confidence 456788999999999999999999999999886 66777899999999999999999999999999987664321
Q ss_pred HHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy11819 465 ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544 (651)
Q Consensus 465 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v 544 (651)
+ ...++..+..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++
T Consensus 110 -~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~ 170 (232)
T 2rfa_A 110 -F------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170 (232)
T ss_dssp -G------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred -e------------------eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence 1 113455667788888888888888888888888888888888888888888888888877
Q ss_pred ----HHHHhcCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q psy11819 545 ----KLLLTANPDL------EIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAV 590 (651)
Q Consensus 545 ----~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 590 (651)
++|++.|+++ +..|..|+||||+|+..|+.++|++|+++|+.....
T Consensus 171 ~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp HHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhh
Confidence 8888888877 578888999999999999999999999988765543
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-33 Score=241.38 Aligned_cols=159 Identities=31% Similarity=0.460 Sum_probs=141.0
Q ss_pred hHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHH
Q psy11819 431 TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGI 510 (651)
Q Consensus 431 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~ 510 (651)
++|+.|+..|+.+++++|+++|++++.+|.+|.|||++|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 46888888888888888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy11819 511 VEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589 (651)
Q Consensus 511 v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 589 (651)
+++|+++|++++.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.+|+.+++++|+++||+++.
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9.2e-33 Score=247.07 Aligned_cols=191 Identities=25% Similarity=0.280 Sum_probs=184.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q psy11819 394 SYGTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD 472 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 472 (651)
..+.|+|+.|+..|+.+.++.|++.+. +++..+..|.||||.|+..++.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 457899999999999999999998876 9999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-hCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCC-----HHHHH
Q psy11819 473 GYYEIAVLLL-NSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY-VDVDIPGKERKTAVYTAVEKGN-----VPILK 545 (651)
Q Consensus 473 ~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~-----~~~v~ 545 (651)
|+.+++++|+ ..+.+++..+..|.||||.|+..++.+++++|+++| .+++..+..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 667799999999999999999999999999999998 8999999999999999999998 99999
Q ss_pred HHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy11819 546 LLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584 (651)
Q Consensus 546 ~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 584 (651)
+|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999876
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=6.1e-34 Score=265.11 Aligned_cols=190 Identities=19% Similarity=0.156 Sum_probs=130.8
Q ss_pred ChHHHHHHhcCcHH----HHHHHHhcCCCCCC----CCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCcc--------
Q psy11819 430 WTPLLVATLGNFTE----VVELLLEYKPNVNA----LDKDGCTALTIACKD---GYYEIAVLLLNSGAYINI-------- 490 (651)
Q Consensus 430 ~t~l~~a~~~~~~~----~~~~Ll~~~~~~~~----~~~~g~t~l~~A~~~---~~~~~~~~Ll~~g~~~~~-------- 490 (651)
+||||.|+..|+.+ ++++|+++|++++. .+..|.||||+|+.. |+.+++++|+++|++++.
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 34444444444443 33334444444444 444455555555554 555555555554444332
Q ss_pred ---cCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHHh---cC
Q psy11819 491 ---QDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKE-------------RKTAVYTAVEKGNVPILKLLLT---AN 551 (651)
Q Consensus 491 ---~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-------------g~t~l~~A~~~~~~~~v~~Ll~---~~ 551 (651)
.+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++ .|
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g 162 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 1244566666666666666666666666666555554 8899999999999999999999 88
Q ss_pred CCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------cccCCCCCcHHHHHHHcCChHHHHHHHh
Q psy11819 552 PDLEIATKDGDTPLLKAVK--TRNLE-------AIQMLIDKKAKI-------TAVDKRGDTVLHIAMRARSKTIVEVFIR 615 (651)
Q Consensus 552 ~~~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~~~~~~~~~Ll~ 615 (651)
++++.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 163 a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242 (256)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999998 77887 999999999888 8889999999999999999999999998
Q ss_pred CCCC
Q psy11819 616 NPKN 619 (651)
Q Consensus 616 ~~~~ 619 (651)
++..
T Consensus 243 ~g~~ 246 (256)
T 2etb_A 243 REFS 246 (256)
T ss_dssp HHHH
T ss_pred CCCC
Confidence 8754
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=7.2e-34 Score=267.29 Aligned_cols=209 Identities=19% Similarity=0.189 Sum_probs=138.3
Q ss_pred CcCcCCChHHHHHHhcCcHHHHHHHHh----cCCCCC----CCCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCC----
Q psy11819 424 VAGLYCWTPLLVATLGNFTEVVELLLE----YKPNVN----ALDKDGCTALTIACKD---GYYEIAVLLLNSGAYI---- 488 (651)
Q Consensus 424 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~----~~~~~~----~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~g~~~---- 488 (651)
..+..+.||||.|+..|+.++++.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 344445555555555555554444443 233332 2345556666666654 5566666666555431
Q ss_pred ---c----ccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCC--------------CCCCHHHHHHHcCCHHHHHHH
Q psy11819 489 ---N----IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGK--------------ERKTAVYTAVEKGNVPILKLL 547 (651)
Q Consensus 489 ---~----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~~v~~L 547 (651)
+ ..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 1 1345667777777777777777777777777766665 788999999999999999999
Q ss_pred Hh---cCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc-------ccCCCCCcHHHHHHHcCChH
Q psy11819 548 LT---ANPDLEIATKDGDTPLLKAVKTRN---------LEAIQMLIDKKAKIT-------AVDKRGDTVLHIAMRARSKT 608 (651)
Q Consensus 548 l~---~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~~-------~~d~~g~t~l~~A~~~~~~~ 608 (651)
++ .|++++.+|..|+||||+|+..++ .+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~ 247 (273)
T 2pnn_A 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247 (273)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence 99 888999999999999999998887 788999999988886 47888999999999999999
Q ss_pred HHHHHHhCCCCcccccCCCCCCCCcc
Q psy11819 609 IVEVFIRNPKNNILLYRPNKAGETPY 634 (651)
Q Consensus 609 ~~~~Ll~~~~~~~~~~~~~~~g~t~l 634 (651)
++++|+++|+.. .......+.+|.
T Consensus 248 iv~~Ll~~ga~d--p~~~~~~~~~~~ 271 (273)
T 2pnn_A 248 VLAYILQREIHE--PECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHHHHTC---------------
T ss_pred HHHHHHHCCCCC--chhhhhhhhhcc
Confidence 999999988831 333455555543
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.6e-33 Score=259.18 Aligned_cols=194 Identities=21% Similarity=0.236 Sum_probs=181.3
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHHcCCCCCC----cCcCCChHHHHHHhc---CcHHHHHHHHhcCCCCCCC-----
Q psy11819 395 YGTTPLVWACRKGHVE----IVDILLKAGANVDV----AGLYCWTPLLVATLG---NFTEVVELLLEYKPNVNAL----- 458 (651)
Q Consensus 395 ~~~t~l~~A~~~~~~~----~v~~Ll~~~~~~~~----~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~----- 458 (651)
+|+||||.|+..|+.+ ++++|++.|++++. .+..|+||||+|+.. ++.+++++|+++|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3789999999999997 66788889999998 899999999999999 9999999999998876533
Q ss_pred ------CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCC-------------CCcHHHHHHhcCcHHHHHHHHh---
Q psy11819 459 ------DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRS-------------GDSNLIHAVKGGHRGIVEALLK--- 516 (651)
Q Consensus 459 ------~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-------------~~t~l~~A~~~~~~~~v~~Ll~--- 516 (651)
+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 367999999999999999999999999999999886 9999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhcCCCc-------cccCCCCCcHHHHHHHcCCHHHHHHH
Q psy11819 517 KYVDVDIPGKERKTAVYTAVE--KGNVP-------ILKLLLTANPDL-------EIATKDGDTPLLKAVKTRNLEAIQML 580 (651)
Q Consensus 517 ~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~L 580 (651)
+|++++.+|..|.||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999 88888 999999999999 99999999999999999999999999
Q ss_pred HHcCCCCc
Q psy11819 581 IDKKAKIT 588 (651)
Q Consensus 581 l~~ga~~~ 588 (651)
+++|++..
T Consensus 241 l~~g~~~~ 248 (256)
T 2etb_A 241 LQREFSGA 248 (256)
T ss_dssp HHHHHHHH
T ss_pred HhCCCCCC
Confidence 99987654
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.3e-33 Score=262.01 Aligned_cols=208 Identities=20% Similarity=0.227 Sum_probs=176.6
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHH----cCCCCC----CcCcCCChHHHHHHhc---CcHHHHHHHHhcCCCC----
Q psy11819 391 MHLSYGTTPLVWACRKGHVEIVDILLK----AGANVD----VAGLYCWTPLLVATLG---NFTEVVELLLEYKPNV---- 455 (651)
Q Consensus 391 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~~~~~~----~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~---- 455 (651)
..+..|.|+|+.|+..|+.++++.|++ .+.+++ ..+..|+||||+|+.. ++.+++++|+++|++.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 355779999999999999998888886 566655 3478999999999986 9999999999997642
Q ss_pred ---C----CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCC--------------CCCcHHHHHHhcCcHHHHHHH
Q psy11819 456 ---N----ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDR--------------SGDSNLIHAVKGGHRGIVEAL 514 (651)
Q Consensus 456 ---~----~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~--------------~~~t~l~~A~~~~~~~~v~~L 514 (651)
+ ..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 2 2566899999999999999999999999999999987 799999999999999999999
Q ss_pred Hh---cCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCcc-------ccCCCCCcHHHHHHHcCCHH
Q psy11819 515 LK---KYVDVDIPGKERKTAVYTAVEKGN---------VPILKLLLTANPDLE-------IATKDGDTPLLKAVKTRNLE 575 (651)
Q Consensus 515 l~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~~~g~t~L~~A~~~~~~~ 575 (651)
++ +|++++.+|..|.||||+|+..++ .+++++|++.|++++ ..|..|+||||+|+..|+.+
T Consensus 168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~ 247 (273)
T 2pnn_A 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247 (273)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence 99 999999999999999999999998 899999999999986 58999999999999999999
Q ss_pred HHHHHHHcCC-CCcccCCCCCcHH
Q psy11819 576 AIQMLIDKKA-KITAVDKRGDTVL 598 (651)
Q Consensus 576 ~v~~Ll~~ga-~~~~~d~~g~t~l 598 (651)
+|++|+++|+ ++......+.+|-
T Consensus 248 iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 248 VLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHHHHTC-------------
T ss_pred HHHHHHHCCCCCchhhhhhhhhcc
Confidence 9999999999 8887776666654
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=4.8e-32 Score=253.06 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=106.6
Q ss_pred ccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCC--------------CCCCCHHHHHHHcCCHHHHHHHHh---cCC
Q psy11819 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG--------------KERKTAVYTAVEKGNVPILKLLLT---ANP 552 (651)
Q Consensus 490 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------~~g~t~l~~A~~~~~~~~v~~Ll~---~~~ 552 (651)
..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++ .|+
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 334466667777777777777777777666666666 578899999999999999999999 888
Q ss_pred CccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------cccCCCCCcHHHHHHHcCChHHHHHHHhC
Q psy11819 553 DLEIATKDGDTPLLKAVKTRN---------LEAIQMLIDKKAKI-------TAVDKRGDTVLHIAMRARSKTIVEVFIRN 616 (651)
Q Consensus 553 ~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ 616 (651)
+++.+|..|+||||+|+..++ .+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999999998777 68999999998888 67889999999999999999999999988
Q ss_pred CCC
Q psy11819 617 PKN 619 (651)
Q Consensus 617 ~~~ 619 (651)
+..
T Consensus 248 g~~ 250 (260)
T 3jxi_A 248 EIA 250 (260)
T ss_dssp HHH
T ss_pred CCC
Confidence 865
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=250.90 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=178.0
Q ss_pred ChHHHHHHhcCcHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCcccCCCCCcHHHHHH---
Q psy11819 430 WTPLLVATLGNFTEVVELLLEYKPN--VNALDKDGCTALTIACKDGYYEIAVLLLNSGA-YINIQDRSGDSNLIHAV--- 503 (651)
Q Consensus 430 ~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~A~--- 503 (651)
.++++.|+..+..+.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.|||+.|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 4678888888999999998887665 78889999999999999999999999999998 99999999999999999
Q ss_pred --hcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11819 504 --KGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581 (651)
Q Consensus 504 --~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 581 (651)
..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.++|++|+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-cCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCC
Q psy11819 582 D-KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618 (651)
Q Consensus 582 ~-~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 618 (651)
+ .|++++.+|..|.||||+|+..|+.+++++|+++..
T Consensus 237 ~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 237 AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 9 899999999999999999999999999999998764
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=5e-31 Score=233.40 Aligned_cols=163 Identities=26% Similarity=0.283 Sum_probs=153.8
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy11819 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYT 534 (651)
Q Consensus 455 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~ 534 (651)
++.+|..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 35578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHH
Q psy11819 535 AVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614 (651)
Q Consensus 535 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll 614 (651)
|+..++.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC
Q psy11819 615 RNP 617 (651)
Q Consensus 615 ~~~ 617 (651)
+.+
T Consensus 188 ~~~ 190 (192)
T 2rfm_A 188 EVR 190 (192)
T ss_dssp HHH
T ss_pred hcc
Confidence 864
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3.9e-31 Score=229.56 Aligned_cols=169 Identities=26% Similarity=0.332 Sum_probs=143.6
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhCCCC-CcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 462 GCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 462 g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
+.||||.|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 45788999999999999999888877 77788888999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCc
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNN 620 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 620 (651)
.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++..
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~- 160 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK- 160 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ccccCCCCCCCCc
Q psy11819 621 ILLYRPNKAGETP 633 (651)
Q Consensus 621 ~~~~~~~~~g~t~ 633 (651)
+..+|..|.||
T Consensus 161 --~~~~~~~~~~p 171 (172)
T 3v30_A 161 --LFQSNLVPADP 171 (172)
T ss_dssp --HSCC-------
T ss_pred --HhcccCCCCCC
Confidence 66678888776
No 57
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.7e-31 Score=247.99 Aligned_cols=195 Identities=22% Similarity=0.224 Sum_probs=177.1
Q ss_pred CCCChHHHHHHHcCCHHH----HHHHHHcCCCCCCcC----cCCChHHHHHH---hcCcHHHHHHHHhcCCC--------
Q psy11819 394 SYGTTPLVWACRKGHVEI----VDILLKAGANVDVAG----LYCWTPLLVAT---LGNFTEVVELLLEYKPN-------- 454 (651)
Q Consensus 394 ~~~~t~l~~A~~~~~~~~----v~~Ll~~~~~~~~~~----~~~~t~l~~a~---~~~~~~~~~~Ll~~~~~-------- 454 (651)
.+++++|+.|+..|+.+. +++|.+.|.+++..+ ..|+||||+|+ ..++.+++++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 458899999999999995 555555899988766 66999999999 67999999999998743
Q ss_pred ---CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccC--------------CCCCcHHHHHHhcCcHHHHHHHHh-
Q psy11819 455 ---VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD--------------RSGDSNLIHAVKGGHRGIVEALLK- 516 (651)
Q Consensus 455 ---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~--------------~~~~t~l~~A~~~~~~~~v~~Ll~- 516 (651)
++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 44455589999999999999999999999999999998 689999999999999999999999
Q ss_pred --cCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCc-------cccCCCCCcHHHHHHHcCCHHHHH
Q psy11819 517 --KYVDVDIPGKERKTAVYTAVEKGN---------VPILKLLLTANPDL-------EIATKDGDTPLLKAVKTRNLEAIQ 578 (651)
Q Consensus 517 --~~~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~v~ 578 (651)
+|++++.+|..|.||||+|+..++ .+++++|+++|+++ +..|..|+||||+|+..|+.++|+
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999888 79999999999998 789999999999999999999999
Q ss_pred HHHHcCCCCc
Q psy11819 579 MLIDKKAKIT 588 (651)
Q Consensus 579 ~Ll~~ga~~~ 588 (651)
+|+++|++..
T Consensus 243 ~Ll~~g~~~~ 252 (260)
T 3jxi_A 243 HIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhCCCcc
Confidence 9999987654
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=4.9e-30 Score=221.49 Aligned_cols=158 Identities=29% Similarity=0.380 Sum_probs=141.2
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Q psy11819 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539 (651)
Q Consensus 460 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 539 (651)
..+.++++.|++.|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 34567889999999999999999999888888888999999999999999999999998888888889999999999999
Q ss_pred CHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCC
Q psy11819 540 NVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNP 617 (651)
Q Consensus 540 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~ 617 (651)
+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++.|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998765
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.1e-30 Score=222.70 Aligned_cols=159 Identities=25% Similarity=0.326 Sum_probs=144.9
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 461 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
.|.||||.|+..|+.+++++|++.|.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 47789999999999999999999998888889999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++++..
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987654
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.8e-30 Score=221.86 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=134.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 461 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
...|||+.|+..|+.+++++|+++|++++..+..|.||||.|+. |+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34578888888888888888888888888888888888888888 88888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK-ITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|+++|++
T Consensus 83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 8888888888888888888888888888888888888888888887 588888888888888888888888888888763
No 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=4.6e-30 Score=222.78 Aligned_cols=168 Identities=26% Similarity=0.226 Sum_probs=149.9
Q ss_pred ChHHHHHHhcCcHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcH
Q psy11819 430 WTPLLVATLGNFTEVVELLLEYKPN-VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508 (651)
Q Consensus 430 ~t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 508 (651)
.+||+.|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 5788899999999999999988876 788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy11819 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588 (651)
Q Consensus 509 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 588 (651)
+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|+++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCcH
Q psy11819 589 AVDKRGDTV 597 (651)
Q Consensus 589 ~~d~~g~t~ 597 (651)
..+..|.||
T Consensus 163 ~~~~~~~~p 171 (172)
T 3v30_A 163 QSNLVPADP 171 (172)
T ss_dssp CC-------
T ss_pred cccCCCCCC
Confidence 888888776
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.7e-32 Score=244.87 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=167.7
Q ss_pred HHHHHhcCCCCCCCC---CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCC
Q psy11819 445 VELLLEYKPNVNALD---KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521 (651)
Q Consensus 445 ~~~Ll~~~~~~~~~~---~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~ 521 (651)
++.|+++|++++..+ ..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 356777777766544 35557899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCCcccCCCCCcHH
Q psy11819 522 DIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIAT-KDGDTPLLKA--VKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598 (651)
Q Consensus 522 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l 598 (651)
+..|..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+| +..|+.+++++|++.|++++..|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 9999999999999999999999999999999999886 6999999999 999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhc
Q psy11819 599 HIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQE 648 (651)
Q Consensus 599 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 648 (651)
+.++.... .++|++.+++ ..++.+|..|+||||+|+..|+..+++.
T Consensus 161 ~~~~~~~~---~~~ll~~ga~-~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGES-VTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp SCBCCSST---TBCCBCTTCE-EEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred HHHhhccc---cccCcccccc-ccccccCCCcccHHHHHHHcCCcceeeh
Confidence 86655443 3577777764 2256789999999999999999887764
No 63
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.3e-29 Score=214.82 Aligned_cols=150 Identities=25% Similarity=0.295 Sum_probs=134.1
Q ss_pred CcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Q psy11819 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVP 542 (651)
Q Consensus 463 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~ 542 (651)
.|+|+.|++.|+.+++++|++.|++++ .+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 478888888899999999988888776 5778889999999999999999999988888888888999999999999999
Q ss_pred HHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHH
Q psy11819 543 ILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613 (651)
Q Consensus 543 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~L 613 (651)
++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998886
No 64
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=241.51 Aligned_cols=189 Identities=23% Similarity=0.284 Sum_probs=180.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCC--CCCcCcCCChHHHHHHhcCcHHHHHHHHhcCC-CCCCCCCCCCcHHHHHH--
Q psy11819 396 GTTPLVWACRKGHVEIVDILLKAGAN--VDVAGLYCWTPLLVATLGNFTEVVELLLEYKP-NVNALDKDGCTALTIAC-- 470 (651)
Q Consensus 396 ~~t~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~-- 470 (651)
..++++.|+..++.+.++.+++.+.+ ++..+..|+||||+|+..++.+++++|++.|+ +++..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 46788899999999999999887665 78899999999999999999999999999998 99999999999999999
Q ss_pred ---HcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11819 471 ---KDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547 (651)
Q Consensus 471 ---~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 547 (651)
..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy11819 548 LT-ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584 (651)
Q Consensus 548 l~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 584 (651)
++ .|++++..|..|+||||+|+..|+.+++++|++++
T Consensus 236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 99 89999999999999999999999999999999874
No 65
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1e-29 Score=225.01 Aligned_cols=163 Identities=26% Similarity=0.305 Sum_probs=153.0
Q ss_pred CCCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHH
Q psy11819 422 VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH 501 (651)
Q Consensus 422 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 501 (651)
++.++..|+||||.|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11819 502 AVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581 (651)
Q Consensus 502 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 581 (651)
|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC
Q psy11819 582 DKK 584 (651)
Q Consensus 582 ~~g 584 (651)
+.|
T Consensus 188 ~~~ 190 (192)
T 2rfm_A 188 EVR 190 (192)
T ss_dssp HHH
T ss_pred hcc
Confidence 864
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.6e-29 Score=217.13 Aligned_cols=157 Identities=26% Similarity=0.276 Sum_probs=140.4
Q ss_pred CChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcH
Q psy11819 429 CWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508 (651)
Q Consensus 429 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 508 (651)
..+||+.|+..++.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||.|+..++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 4578888888888888888888888888888889999999888 899999999999999998888999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPD-LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 509 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++||+
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999997 588999999999999999999999999999885
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=3.7e-29 Score=216.01 Aligned_cols=158 Identities=30% Similarity=0.340 Sum_probs=136.2
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC
Q psy11819 427 LYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506 (651)
Q Consensus 427 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 506 (651)
..+.++++.|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..+
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy11819 507 HRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584 (651)
Q Consensus 507 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 584 (651)
+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..|..|.|||++|+..|+.+++++|++.|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 888888888888888888888899999999999999999999999999888889999999999999999999998865
No 68
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=6.7e-33 Score=267.60 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=98.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC---CCCCCCCchHHHHHH
Q psy11819 158 GTALMFAAQKGKLSFVRELVTRGADV---NAEDNDNWSPLTYAAREGYTDVCAELLDHGADL---EHRDMGGWSPLMWAS 231 (651)
Q Consensus 158 ~t~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~~t~L~~A~ 231 (651)
+||||+|+..|+.++|++|++.|+.. +..+..+.||||+|+..|+.+++++|+++|+++ +..+.+ .||||+|+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 46777777777777777777766521 122334566777777777777777777777542 212222 67777777
Q ss_pred HcCCHHHHHHHHhcCCCCCC--cCCCCCcHHHHHH-hcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11819 232 YKGHTDTVALLLDKNADVNA--HGNYHISSLIWAA-GRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308 (651)
Q Consensus 232 ~~~~~~~v~~Ll~~~~~~~~--~~~~~~t~L~~a~-~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ 308 (651)
..|+.+++++|+++|++++. .+..|.|||++|+ ..|+.+++++|++.|. .+.||+++|+..|+.+++++
T Consensus 172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~l 243 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPF 243 (376)
T ss_dssp HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHH
T ss_pred HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHH
Confidence 77777777777777776655 5566667777777 7777777777776553 25677777777777777777
Q ss_pred HHHcCCCc
Q psy11819 309 LLKAGANV 316 (651)
Q Consensus 309 Ll~~~~~~ 316 (651)
|+++|+++
T Consensus 244 L~~~ga~~ 251 (376)
T 2aja_A 244 IARHVNRL 251 (376)
T ss_dssp HHHHHHHH
T ss_pred HHhcCccc
Confidence 77776554
No 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=7.9e-29 Score=213.82 Aligned_cols=160 Identities=24% Similarity=0.213 Sum_probs=149.6
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCc
Q psy11819 428 YCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH 507 (651)
Q Consensus 428 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~ 507 (651)
.+.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy11819 508 RGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKI 587 (651)
Q Consensus 508 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 587 (651)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++++++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887653
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=4.3e-29 Score=218.01 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=128.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhC-CCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Q psy11819 461 DGCTALTIACKDGYYEIAVLLLNS-GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539 (651)
Q Consensus 461 ~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 539 (651)
++.++|+.|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 456778888888888888888877 5667777778888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 540 NVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 540 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|++.+++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred c
Q psy11819 620 N 620 (651)
Q Consensus 620 ~ 620 (651)
.
T Consensus 164 ~ 164 (179)
T 3f6q_A 164 L 164 (179)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.1e-32 Score=246.62 Aligned_cols=199 Identities=19% Similarity=0.131 Sum_probs=174.5
Q ss_pred HHHHHHcCCCCCCc---CcCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q psy11819 412 VDILLKAGANVDVA---GLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYI 488 (651)
Q Consensus 412 v~~Ll~~~~~~~~~---~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 488 (651)
++.|+++|.+++.. +..+.|||+.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 46788888887654 456678899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy11819 489 NIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG-KERKTAVYTA--VEKGNVPILKLLLTANPDLEIATKDGDTPL 565 (651)
Q Consensus 489 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L 565 (651)
+..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|++.|++++..+..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 9999999999999999999999999999999999986 6999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHcCChHHHHHH
Q psy11819 566 LKAVKTRNLEAIQMLIDKKAK--ITAVDKRGDTVLHIAMRARSKTIVEVF 613 (651)
Q Consensus 566 ~~A~~~~~~~~v~~Ll~~ga~--~~~~d~~g~t~l~~A~~~~~~~~~~~L 613 (651)
+.++..+. +++|++.|++ ++.+|..|+||||+|+..|+.++|+.+
T Consensus 161 ~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 96555443 3688899998 677899999999999999999998753
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=2.3e-29 Score=216.75 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=131.1
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q psy11819 459 DKDGCTALTIACKDGYYEIAVLLLN-SGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVE 537 (651)
Q Consensus 459 ~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~ 537 (651)
+.++.|+|+.|++.|+.+++++|++ .+.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 4566788888888888888888887 455666677778888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCC
Q psy11819 538 KGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNP 617 (651)
Q Consensus 538 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~ 617 (651)
.++.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|.. ++.+++++|+++|
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 888888888888888888888888888888888888888888888888888888888888888766 7888888888876
Q ss_pred C
Q psy11819 618 K 618 (651)
Q Consensus 618 ~ 618 (651)
+
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 4
No 73
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=3.3e-32 Score=262.76 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=171.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCC---CCcCcCCChHHHHHHhcCcHHHHHHHHhcCCCC---CCCCCCCCcHHHHH
Q psy11819 396 GTTPLVWACRKGHVEIVDILLKAGANV---DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV---NALDKDGCTALTIA 469 (651)
Q Consensus 396 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~g~t~l~~A 469 (651)
+.||||.|+..|+.+++++|++.|... +..+..+.||||.|+..|+.+++++|+++|+++ +..+.+ .||||+|
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A 170 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA 170 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence 349999999999999999999998732 234456789999999999999999999999752 222223 8999999
Q ss_pred HHcCcHHHHHHHHhCCCCCcc--cCCCCCcHHHHHH-hcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11819 470 CKDGYYEIAVLLLNSGAYINI--QDRSGDSNLIHAV-KGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKL 546 (651)
Q Consensus 470 ~~~~~~~~~~~Ll~~g~~~~~--~~~~~~t~l~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 546 (651)
+..|+.+++++|+++|++++. .+..|.||||.|+ ..|+.+++++|+++|. .|.|||++|+..|+.+++++
T Consensus 171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~l 243 (376)
T 2aja_A 171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPF 243 (376)
T ss_dssp HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHH
T ss_pred HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHH
Confidence 999999999999999999887 8888999999999 9999999999999763 37899999999999999999
Q ss_pred HHhcCCCccccCCCCCcHHHHHHHcCC---------------------------HHHHHHHHHcCC-----CCcccCCCC
Q psy11819 547 LLTANPDLEIATKDGDTPLLKAVKTRN---------------------------LEAIQMLIDKKA-----KITAVDKRG 594 (651)
Q Consensus 547 Ll~~~~~~~~~~~~g~t~L~~A~~~~~---------------------------~~~v~~Ll~~ga-----~~~~~d~~g 594 (651)
|++.|++++..+. +++.|+.+|+ .+.+++|++.++ +.......+
T Consensus 244 L~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~ 319 (376)
T 2aja_A 244 IARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319 (376)
T ss_dssp HHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred HHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence 9999987765432 3333333333 445566665321 112223457
Q ss_pred CcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhh
Q psy11819 595 DTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQ 647 (651)
Q Consensus 595 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 647 (651)
.|||++|+..|+.+++++|++.+.. ++..|+||+.+|-..|...+++
T Consensus 320 ~~~L~~A~~~g~~e~v~lLl~~~~v------~~~~~~~~~~~~~~~~~~~~~~ 366 (376)
T 2aja_A 320 NELLRLALRLGNQGACALLLSIPSV------LALTKANNYYINETGGRLDLRA 366 (376)
T ss_dssp CHHHHHHHHHTCTTHHHHHTTSHHH------HHSCC-----------------
T ss_pred cHHHHHHHHcCcHHHHHHHHcChHH------HHHHHHhccccccccccccHHH
Confidence 7999999999999999999987644 7889999999999988876654
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=8.2e-30 Score=233.58 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=125.3
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Q psy11819 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539 (651)
Q Consensus 460 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 539 (651)
..|.||||.|++.++.+.++.|+++|++++.. ..+.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 35788888888888888888888888888754 66788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-cHHHHH--HHcCChHHHHHHHhC
Q psy11819 540 NVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGD-TVLHIA--MRARSKTIVEVFIRN 616 (651)
Q Consensus 540 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~l~~A--~~~~~~~~~~~Ll~~ 616 (651)
+.+++++|+++|++++..|..|+||||+|+..|+.++|++|+++|++++..|..|. ||||+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 88888888888888888888888899988888888888988888888888887777 888888 778888888888888
Q ss_pred CCCccccc------CCCCCCCCcccccccccch
Q psy11819 617 PKNNILLY------RPNKAGETPYSIDMNNQKS 643 (651)
Q Consensus 617 ~~~~~~~~------~~~~~g~t~l~~a~~~~~~ 643 (651)
+++....+ ..+..|++|++++.+.|..
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC 194 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence 77633221 2377788999999888863
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.4e-28 Score=209.67 Aligned_cols=153 Identities=21% Similarity=0.280 Sum_probs=138.5
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhC-CCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 462 GCTALTIACKDGYYEIAVLLLNS-GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 462 g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
+.|+|+.|+..|+.+++++|++. +.+++..+..|.||||. +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45789999999999999999988 44888888899999999 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhC
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ 616 (651)
.+++++|++.|++++..|..|+||||+|+..|+.+++++|++. ++++..|..|.||||+|+..++.+++++|+++
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999999875
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.5e-28 Score=214.62 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=151.6
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC
Q psy11819 428 YCWTPLLVATLGNFTEVVELLLEY-KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506 (651)
Q Consensus 428 ~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 506 (651)
.+.++|+.|+..++.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 456788999999999999999887 5678888899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 507 HRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 507 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+..++.+++++|++.|++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCC
Q psy11819 587 ITAVDKRG 594 (651)
Q Consensus 587 ~~~~d~~g 594 (651)
++..+..+
T Consensus 164 ~~~~~~~~ 171 (179)
T 3f6q_A 164 LNRIPYKD 171 (179)
T ss_dssp CSCBCCCC
T ss_pred cccCCccc
Confidence 98776543
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=3.7e-28 Score=205.94 Aligned_cols=150 Identities=24% Similarity=0.292 Sum_probs=136.5
Q ss_pred ChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHH
Q psy11819 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG 509 (651)
Q Consensus 430 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 509 (651)
.++|+.|+..|+.+++++|+++|++++ .+..|.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..++.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 478888888888888888888888765 4778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy11819 510 IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580 (651)
Q Consensus 510 ~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 580 (651)
++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.9e-30 Score=237.77 Aligned_cols=212 Identities=16% Similarity=0.124 Sum_probs=153.0
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC
Q psy11819 427 LYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506 (651)
Q Consensus 427 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 506 (651)
..|.|||+.|+..+..+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 45788999999999999999999999888754 67889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCC-cHHHHH--HHcCCHHHHHHHHHc
Q psy11819 507 HRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGD-TPLLKA--VKTRNLEAIQMLIDK 583 (651)
Q Consensus 507 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A--~~~~~~~~v~~Ll~~ 583 (651)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+| +..|+.+++++|++.
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998877 999999 788999999999999
Q ss_pred CCCCccc---------CCCCCcHHHHHHHcCChHHHHHHHhCCCCc---ccccCCCCCCCCccccccccc
Q psy11819 584 KAKITAV---------DKRGDTVLHIAMRARSKTIVEVFIRNPKNN---ILLYRPNKAGETPYSIDMNNQ 641 (651)
Q Consensus 584 ga~~~~~---------d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~~~g~t~l~~a~~~~ 641 (651)
|++++.. +..+.+++++|.+.|. +++.|.+.+..+ -.....+..|.+|.++.-..+
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~ 229 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence 9888776 5668889888888776 455555544331 011246778889988876554
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=3.1e-28 Score=209.57 Aligned_cols=159 Identities=26% Similarity=0.262 Sum_probs=141.0
Q ss_pred CcCCChHHHHHHhcCcHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHh
Q psy11819 426 GLYCWTPLLVATLGNFTEVVELLLE-YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVK 504 (651)
Q Consensus 426 ~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~ 504 (651)
+..+.++|+.|+..++.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 4566788888888888888888887 445677777888899999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy11819 505 GGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584 (651)
Q Consensus 505 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 584 (651)
.++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+. ++.+++++|+++|
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999777 8899999999887
Q ss_pred C
Q psy11819 585 A 585 (651)
Q Consensus 585 a 585 (651)
+
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 6
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.5e-27 Score=201.84 Aligned_cols=152 Identities=28% Similarity=0.326 Sum_probs=123.9
Q ss_pred ChHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcH
Q psy11819 430 WTPLLVATLGNFTEVVELLLEY-KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508 (651)
Q Consensus 430 ~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 508 (651)
.++|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||.|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 4677777777777777777776 33677777778888888 777888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy11819 509 GIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK 583 (651)
Q Consensus 509 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 583 (651)
+++++|+++|++++.++..|.||||+|+..|+.+++++|++. ++++..|..|.||||+|+..|+.+++++|+++
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888 88888888888888888888888888888763
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3.7e-27 Score=195.00 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCC-CCcH
Q psy11819 486 AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKD-GDTP 564 (651)
Q Consensus 486 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~ 564 (651)
++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+. ++.+++++|+++|++++..|.. |+||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 4455555566666666666666666666666666666666666666666666 6666666666666666666666 6666
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCC
Q psy11819 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618 (651)
Q Consensus 565 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 618 (651)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 666666666666666666666666666666666666666666666666665553
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=7.2e-27 Score=193.25 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=129.3
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCC-CCC
Q psy11819 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKE-RKT 530 (651)
Q Consensus 452 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t 530 (651)
+++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 46788899999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 531 AVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 531 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
|||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999986
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6e-27 Score=198.94 Aligned_cols=140 Identities=19% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCC-HHHHHHH
Q psy11819 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKT-AVYTAVE 537 (651)
Q Consensus 459 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~l~~A~~ 537 (651)
+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||+|+.
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence 334455555555555555555555555555555555555555542 44555555555555555555555554 5555555
Q ss_pred cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q psy11819 538 KGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLH 599 (651)
Q Consensus 538 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~ 599 (651)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||.+
T Consensus 88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 55555555555555555555555555555555555555555555555555555555544444
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6e-27 Score=198.94 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=121.7
Q ss_pred cccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCc-HHHH
Q psy11819 489 NIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDT-PLLK 567 (651)
Q Consensus 489 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~ 567 (651)
...+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..|..|+| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 455678899999999999999999999999999999999999999985 99999999999999999999999999 9999
Q ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccc
Q psy11819 568 AVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDM 638 (651)
Q Consensus 568 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~ 638 (651)
|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++|++ ++.+|..|.||.+-+.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccCC
Confidence 9999999999999999999999999999999999999999999999999998 7789999999988554
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=1.6e-27 Score=207.05 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=134.0
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCcH----HHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q psy11819 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQD-RSGDSNLIHAVKGGHR----GIVEALLKKYVDVDIPGKERKTAVYTAV 536 (651)
Q Consensus 462 g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~g~t~l~~A~ 536 (651)
+.++++.|++.|+.+.++.+++.+. +..+ ..|.||||+|+..++. +++++|+++|++++.++.+|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 3467888888888888888887664 4444 6688999999988865 5899999999999999999999999999
Q ss_pred HcCC------HHHHHHHHhcCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCcccCCCCCcHHHHHHH
Q psy11819 537 EKGN------VPILKLLLTANPDLEIATKDGD-TPLLKAVKTR-----NLEAIQMLID-KKAKITAVDKRGDTVLHIAMR 603 (651)
Q Consensus 537 ~~~~------~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~ 603 (651)
..++ .+++++|+++|+++|.+|..|+ ||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|++
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence 8886 6789999999999999999999 9999999844 4579999999 999999999999999999999
Q ss_pred cCChHHHHHHHhCCCC
Q psy11819 604 ARSKTIVEVFIRNPKN 619 (651)
Q Consensus 604 ~~~~~~~~~Ll~~~~~ 619 (651)
.++.+++++|.+..+.
T Consensus 164 ~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 164 CQKPIALKMMEDYIKK 179 (186)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999887654
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=3.3e-25 Score=183.21 Aligned_cols=125 Identities=25% Similarity=0.363 Sum_probs=101.4
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q psy11819 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTR 572 (651)
Q Consensus 493 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 572 (651)
..+.||||.|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34567788888888888888888888888877888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCC
Q psy11819 573 NLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNP 617 (651)
Q Consensus 573 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~ 617 (651)
+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888888888888888888888888888888764
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=2.3e-26 Score=199.73 Aligned_cols=156 Identities=21% Similarity=0.193 Sum_probs=93.7
Q ss_pred hHHHHHHhcCcHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcH----HHHHHHHhCCCCCcccCCCCCcHHHHHHhc
Q psy11819 431 TPLLVATLGNFTEVVELLLEYKPNVNALD-KDGCTALTIACKDGYY----EIAVLLLNSGAYINIQDRSGDSNLIHAVKG 505 (651)
Q Consensus 431 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 505 (651)
++++.|+..|+.+.++.+++.+. +..+ ..|.||||+|+..++. +++++|+++|++++.++..|.||||+|+..
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 34444444444444444444332 1222 3355555555555542 355555555555555555555555555555
Q ss_pred Cc------HHHHHHHHhcCCCCCCCCCCCC-CHHHHHHHcC-----CHHHHHHHHh-cCCCccccCCCCCcHHHHHHHcC
Q psy11819 506 GH------RGIVEALLKKYVDVDIPGKERK-TAVYTAVEKG-----NVPILKLLLT-ANPDLEIATKDGDTPLLKAVKTR 572 (651)
Q Consensus 506 ~~------~~~v~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~ 572 (651)
++ .+++++|+++|++++.+|..|. ||||+|+..+ +.+++++|++ .|++++.+|..|+||||+|++.|
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence 44 4566666666666666666666 6677666633 3457777777 77888878888888888888888
Q ss_pred CHHHHHHHHHcCCCCc
Q psy11819 573 NLEAIQMLIDKKAKIT 588 (651)
Q Consensus 573 ~~~~v~~Ll~~ga~~~ 588 (651)
+.++|++|.+...+.+
T Consensus 166 ~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 166 KPIALKMMEDYIKKYN 181 (186)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888877776544333
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=8.2e-25 Score=178.95 Aligned_cols=124 Identities=32% Similarity=0.518 Sum_probs=79.0
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q psy11819 495 GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574 (651)
Q Consensus 495 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 574 (651)
|.|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 81 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCC
Q psy11819 575 EAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPK 618 (651)
Q Consensus 575 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 618 (651)
+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|+
T Consensus 82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 66666666666666666666666666666666666666666554
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.2e-24 Score=177.97 Aligned_cols=126 Identities=34% Similarity=0.561 Sum_probs=119.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 461 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
+|.||||.|+..|+.+++++|+++|++++..+..|.|||+.|+..++.+++++|+++|.+++.++..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
.+++++|+++|++++..+..|.|||++|+..++.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999986
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=1e-24 Score=180.76 Aligned_cols=124 Identities=22% Similarity=0.290 Sum_probs=75.0
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11819 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAM 602 (651)
Q Consensus 523 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 602 (651)
.++..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccchhhhhcc
Q psy11819 603 RARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSILAQEC 649 (651)
Q Consensus 603 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 649 (651)
..++.+++++|++++.+ ++.+|..|+||+|+|...+...+++.+
T Consensus 85 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp HTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred HcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 66666666666666555 455566666666666665555555443
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.6e-24 Score=179.13 Aligned_cols=126 Identities=27% Similarity=0.283 Sum_probs=114.2
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Q psy11819 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEK 538 (651)
Q Consensus 459 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 538 (651)
...+.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|+++|++++..+..|.||||+|+..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy11819 539 GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584 (651)
Q Consensus 539 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 584 (651)
++.+++++|+++|++++..|..|+||||+|+..|+.+++++|++.|
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999876
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=1.7e-25 Score=185.42 Aligned_cols=134 Identities=21% Similarity=0.258 Sum_probs=107.7
Q ss_pred CCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcH
Q psy11819 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTP 564 (651)
Q Consensus 485 g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~ 564 (651)
|+|+ .++..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..|..|+||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4566 677788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCC
Q psy11819 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619 (651)
Q Consensus 565 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 619 (651)
||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|.+++..
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 8888888888888888888888888888888888888888888888777766543
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=1.1e-23 Score=170.61 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy11819 527 ERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606 (651)
Q Consensus 527 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 606 (651)
.|.|+||+|+..|+.+++++|++.|++++..|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHhCCCCcccccCCCCCCCCcccccccccch
Q psy11819 607 KTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKS 643 (651)
Q Consensus 607 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 643 (651)
.+++++|++++.+ ++.+|..|+||+|+|...+..
T Consensus 86 ~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 86 VSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHHHH
T ss_pred HHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHHHH
Confidence 5555555555544 444555555555555444333
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=198.67 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=109.9
Q ss_pred CcHHHHHHhcCcHHHHHHHHhcCCCCCC------CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCcHHH
Q psy11819 496 DSNLIHAVKGGHRGIVEALLKKYVDVDI------PGKERKTAVYTAVEK---GNVPILKLLLTANPDLEIATKDGDTPLL 566 (651)
Q Consensus 496 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 566 (651)
.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|+++|++++..|..|+||||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh 231 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 231 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4567777777777777777777777776 577888888888886 7888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccccch
Q psy11819 567 KAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQKS 643 (651)
Q Consensus 567 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 643 (651)
+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|++++++ .|.||||+|+..|..
T Consensus 232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC--------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcCCc
Confidence 88888888888888888888888888888888888888888888888888765 578999998887754
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=1.2e-23 Score=170.39 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=96.9
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q psy11819 492 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKT 571 (651)
Q Consensus 492 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 571 (651)
+..|.|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|++.|++++..|..|+||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34567888888888888888888888888888888888999999999999999999999999888888999999999999
Q ss_pred CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q psy11819 572 RNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRA 604 (651)
Q Consensus 572 ~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 604 (651)
++.+++++|+++|++++.+|..|.||||+|...
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence 999999999999999998999999999988443
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=2.5e-23 Score=181.76 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHc
Q psy11819 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG-KERKTAVYTAVEK 538 (651)
Q Consensus 460 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A~~~ 538 (651)
..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 356788888888888888888888 88888888888888888888888888888888888888777 7788888888888
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhC
Q psy11819 539 GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616 (651)
Q Consensus 539 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ 616 (651)
|+.+++++|+++|++++.+|..|+||||+|+..++. ..+.++|++|++.|+.+++++|.++
T Consensus 121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 888888888888888888888888888888864432 3457888899988888888888765
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=191.45 Aligned_cols=141 Identities=19% Similarity=0.100 Sum_probs=126.5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCcc------cCCCCCcHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCH
Q psy11819 461 DGCTALTIACKDGYYEIAVLLLNSGAYINI------QDRSGDSNLIHAVKG---GHRGIVEALLKKYVDVDIPGKERKTA 531 (651)
Q Consensus 461 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~ 531 (651)
...++|+.|+..|+.+.+++|++.|++++. .+..|.||||+|+.. ++.+++++|+++|++++..|..|.||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 345689999999999999999999999998 688999999999997 89999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCh
Q psy11819 532 VYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSK 607 (651)
Q Consensus 532 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 607 (651)
||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++ .|.||||+|+.+|+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999887 479999999988763
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=5e-23 Score=188.61 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=109.5
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHc
Q psy11819 460 KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPG-KERKTAVYTAVEK 538 (651)
Q Consensus 460 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A~~~ 538 (651)
..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 356778888888888888888887 77788888888888888888888888888888888887777 6788888888888
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhC
Q psy11819 539 GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616 (651)
Q Consensus 539 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ 616 (651)
|+.+++++|+++|++++..|..|+||||+|+..++ ...+.|||++|+..|+.+++++|++.
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 88888888888888888888888888888875322 24567888888888888888888875
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=6.4e-22 Score=184.21 Aligned_cols=201 Identities=20% Similarity=0.169 Sum_probs=151.1
Q ss_pred cCcCCChHHHHHHhcCcHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCcccCCCCCcHHHHH
Q psy11819 425 AGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA-LDKDGCTALTIACKDGYYEIAVLLLNSGA-YINIQDRSGDSNLIHA 502 (651)
Q Consensus 425 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~A 502 (651)
.|..+.+.++.+...|+....+++...-..... +...+... .....+-..+|+...-. ..........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 455677889999888988777766543222111 11111112 11122222233322211 1111111224689999
Q ss_pred HhcCcHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q psy11819 503 VKGGHRGIVEALLKKYVD------VDIPGKERKTAVYTAVEK---GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573 (651)
Q Consensus 503 ~~~~~~~~v~~Ll~~~~~------~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 573 (651)
+..++.+.++.+++.|.+ ++..+..|.||||+|+.. ++.+++++|+++|+++|..|..|+||||+|+..|+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 999999999999999988 445578899999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCcccccccc
Q psy11819 574 LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNN 640 (651)
Q Consensus 574 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~~ 640 (651)
.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++++. .+++|.+++.
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----------~~~~~~~v~~ 273 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG-----------RFNSHVHVEY 273 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT-----------CCCSSCCCCC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCCcceeeec
Confidence 9999999999999999999999999999999999999999999864 4666666553
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=1.9e-23 Score=189.33 Aligned_cols=130 Identities=25% Similarity=0.259 Sum_probs=93.4
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHH
Q psy11819 492 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA-NPDLEIATKDGDTPLLKAVK 570 (651)
Q Consensus 492 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~ 570 (651)
+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 44567777777777777777777777777777777777777777777777777777777 77777777777788888887
Q ss_pred cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcc
Q psy11819 571 TRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNI 621 (651)
Q Consensus 571 ~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~ 621 (651)
.|+.++|++|+++|++++.+|..|.|||++|+..+..++++.|++.++...
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 778888888887787777777778888888877777777777777777643
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=3.2e-22 Score=174.67 Aligned_cols=140 Identities=25% Similarity=0.310 Sum_probs=128.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCchHHHHHHH
Q psy11819 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD-MGGWSPLMWASY 232 (651)
Q Consensus 154 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~~t~L~~A~~ 232 (651)
+..|.||||+|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3457899999999999999999999 99999999999999999999999999999999999999888 889999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCcCCCCCcHHHHHHhcChHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11819 233 KGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312 (651)
Q Consensus 233 ~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~ 312 (651)
.|+.+++++|+++|++++..+..|.|||++|+..++. . .+.+++++|+..|+.+++++|.++
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~-~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------T-PKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------C-CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------c-ccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999875433 1 467999999999999999999864
No 102
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=2.5e-22 Score=192.95 Aligned_cols=122 Identities=21% Similarity=0.206 Sum_probs=61.5
Q ss_pred CCcHHHHHHHc-CcHHHHHHHHhCCCCCcccC--CCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Q psy11819 462 GCTALTIACKD-GYYEIAVLLLNSGAYINIQD--RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEK 538 (651)
Q Consensus 462 g~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~--~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 538 (651)
+.|+||.|+.. ++.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 33455555555 55555555555555555444 4444555555555555555555555555554444455555555555
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy11819 539 GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK 583 (651)
Q Consensus 539 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 583 (651)
|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..
T Consensus 279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~ 323 (368)
T 3jue_A 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323 (368)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 555555555555555544444555555555555555555555443
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=6.9e-23 Score=185.56 Aligned_cols=136 Identities=22% Similarity=0.246 Sum_probs=114.0
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHH
Q psy11819 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK-YVDVDIPGKERKTAVYTAVE 537 (651)
Q Consensus 459 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~~ 537 (651)
+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Q psy11819 538 KGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRG 594 (651)
Q Consensus 538 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g 594 (651)
.|+.+++++|+++|++++..+..|+|||++|+..++.++++.|++.|+.....+..+
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999999999999999999999999999999877665443
No 104
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=3.7e-22 Score=182.83 Aligned_cols=141 Identities=26% Similarity=0.236 Sum_probs=105.0
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcC
Q psy11819 428 YCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD-RSGDSNLIHAVKGG 506 (651)
Q Consensus 428 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~ 506 (651)
.|.||||.|+..++.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 45677777777777777777777 77777777777777777777777777777777777777776 66777777777777
Q ss_pred cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy11819 507 HRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586 (651)
Q Consensus 507 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 586 (651)
+.+++++|+++|++++..+..|.||||+|+..++ ...+.|||++|+..|+.+++++|++.+.+
T Consensus 123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 123 RPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 7777777777777777777778888887775221 24567888888888888888888875433
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=1.8e-21 Score=148.38 Aligned_cols=92 Identities=32% Similarity=0.533 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy11819 527 ERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606 (651)
Q Consensus 527 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 606 (651)
+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHhCCC
Q psy11819 607 KTIVEVFIRNPK 618 (651)
Q Consensus 607 ~~~~~~Ll~~~~ 618 (651)
.+++++|+++|+
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 888888887775
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=6e-21 Score=177.65 Aligned_cols=190 Identities=19% Similarity=0.147 Sum_probs=144.4
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCcCCChHHHHHHhcCcHHHH--HHHHhcCC-CCCCCCCCCCcHHHHH
Q psy11819 393 LSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVV--ELLLEYKP-NVNALDKDGCTALTIA 469 (651)
Q Consensus 393 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~--~~Ll~~~~-~~~~~~~~g~t~l~~A 469 (651)
|..+.+.++.+...|+..+.+++...-.............. .. ..+.+ +++..... ..........++|+.|
T Consensus 63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~---~~--~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM---IA--RKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH---HH--HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH---HH--HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 45577889999999987776665433221111011111111 11 12222 23322211 1111112234689999
Q ss_pred HHcCcHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHhc---CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy11819 470 CKDGYYEIAVLLLNSGAYIN------IQDRSGDSNLIHAVKG---GHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540 (651)
Q Consensus 470 ~~~~~~~~~~~Ll~~g~~~~------~~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 540 (651)
+..|+.+.++.+++.|++++ ..+..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999999999844 4478899999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy11819 541 VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKI 587 (651)
Q Consensus 541 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 587 (651)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998863
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=8.3e-21 Score=144.74 Aligned_cols=93 Identities=32% Similarity=0.515 Sum_probs=79.6
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q psy11819 494 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573 (651)
Q Consensus 494 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 573 (651)
+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCC
Q psy11819 574 LEAIQMLIDKKAK 586 (651)
Q Consensus 574 ~~~v~~Ll~~ga~ 586 (651)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8888888888874
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=6.4e-21 Score=193.89 Aligned_cols=135 Identities=21% Similarity=0.145 Sum_probs=106.6
Q ss_pred CcHHHHHHHcCcHHHHHHHHhCCCCCccc------CCCCCcHHHHHHh---cCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy11819 463 CTALTIACKDGYYEIAVLLLNSGAYINIQ------DRSGDSNLIHAVK---GGHRGIVEALLKKYVDVDIPGKERKTAVY 533 (651)
Q Consensus 463 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~------~~~~~t~l~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~ 533 (651)
.+.|+.|+..|+.+.++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++..|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36788888888888888888888888876 7788888888865 88888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy11819 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMR 603 (651)
Q Consensus 534 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 603 (651)
+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 88888888888888888888888888888888888888888888888888888764 56776653
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.2e-20 Score=181.33 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=92.3
Q ss_pred CCCCcHHHHHHhc-CcHHHHHHHHhcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy11819 493 RSGDSNLIHAVKG-GHRGIVEALLKKYVDVDIPG--KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAV 569 (651)
Q Consensus 493 ~~~~t~l~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 569 (651)
..+.|+|+.|+.. ++.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3455677777777 77777777777777777666 66777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccccCCCCCCCCccccccc
Q psy11819 570 KTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMN 639 (651)
Q Consensus 570 ~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~a~~ 639 (651)
..|+.++|++|+++|++++..|..|.||||+|+..++.+++++|+..+.........+..+.|+++++-.
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777776654443344456666677666544
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=1.3e-20 Score=191.73 Aligned_cols=135 Identities=17% Similarity=0.089 Sum_probs=116.8
Q ss_pred ChHHHHHHhcCcHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHH---cCcHHHHHHHHhCCCCCcccCCCCCcHHH
Q psy11819 430 WTPLLVATLGNFTEVVELLLEYKPNVNAL------DKDGCTALTIACK---DGYYEIAVLLLNSGAYINIQDRSGDSNLI 500 (651)
Q Consensus 430 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~------~~~g~t~l~~A~~---~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 500 (651)
.+.|+.|+..++.+.++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 37899999999999999999999999877 8899999999976 89999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q psy11819 501 HAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVK 570 (651)
Q Consensus 501 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 570 (651)
+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 99999999999999999999999999999999999999999999999999999876 46776553
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=9.8e-21 Score=151.21 Aligned_cols=106 Identities=32% Similarity=0.428 Sum_probs=47.3
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q psy11819 492 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKT 571 (651)
Q Consensus 492 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 571 (651)
|..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..|..|+||||+|+..
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~ 85 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN 85 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHC
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHcCCCCcccCCCCCcH
Q psy11819 572 RNLEAIQMLIDKKAKITAVDKRGDTV 597 (651)
Q Consensus 572 ~~~~~v~~Ll~~ga~~~~~d~~g~t~ 597 (651)
++.+++++|+++|++++.++..|.+|
T Consensus 86 ~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 86 GHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CCHHHHHHHHHcCCCCCcCCcccccc
Confidence 44444444444444444444444433
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=7.8e-21 Score=151.80 Aligned_cols=109 Identities=26% Similarity=0.359 Sum_probs=102.5
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11819 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAM 602 (651)
Q Consensus 523 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 602 (651)
.+|.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhCCCCcccccCCCCCCCCcc
Q psy11819 603 RARSKTIVEVFIRNPKNNILLYRPNKAGETPY 634 (651)
Q Consensus 603 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l 634 (651)
..++.+++++|+++|++ ++.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGAD---VNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSS---HHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCC---CCcCCccccccc
Confidence 99999999999999998 777899999884
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=2e-18 Score=135.97 Aligned_cols=91 Identities=24% Similarity=0.434 Sum_probs=79.3
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11819 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAM 602 (651)
Q Consensus 523 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 602 (651)
..+.+|.|+||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 45677889999999999999999999999999888889999999999999999999999999999989999999999999
Q ss_pred HcCChHHHHHH
Q psy11819 603 RARSKTIVEVF 613 (651)
Q Consensus 603 ~~~~~~~~~~L 613 (651)
..++.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 99999988876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1.8e-17 Score=130.51 Aligned_cols=93 Identities=33% Similarity=0.439 Sum_probs=83.2
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCchHHHH
Q psy11819 150 ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229 (651)
Q Consensus 150 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~L~~ 229 (651)
....+..|.|+||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q psy11819 230 ASYKGHTDTVALL 242 (651)
Q Consensus 230 A~~~~~~~~v~~L 242 (651)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999887
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=50.49 E-value=61 Score=32.23 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=39.0
Q ss_pred HHHHHhhCHHHHHHHHHcCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHHHHHhCC
Q psy11819 128 QSYIAEDNLDSLQTFLENKRTVADDRDDNGG-TALMFAAQKGKLSFVREL----VTRGADVNAEDNDNWSPLTYAAREGY 202 (651)
Q Consensus 128 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~-t~l~~A~~~g~~~~v~~L----l~~~~~~~~~~~~~~t~L~~A~~~g~ 202 (651)
...+..|+.+....++..-....-..|...+ +.|...+..|+.+-...+ .+.|..++.... .+.+...+..|+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~ 190 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCCC
Confidence 3445566666655555433222111222222 344455677776544443 445665543321 124555567777
Q ss_pred HHHHHHHHH
Q psy11819 203 TDVCAELLD 211 (651)
Q Consensus 203 ~~iv~~Ll~ 211 (651)
.+-+..+++
T Consensus 191 ~d~A~~ll~ 199 (501)
T 4g26_A 191 ADKVYKTLQ 199 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 654444443
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=38.27 E-value=1.3e+02 Score=29.86 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=52.0
Q ss_pred cHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHhCCHH----HHHHHHHcCCCCCCCCCCCchHHHHH
Q psy11819 159 TALMFAAQKGKLSFVRELV----TRGADVNAEDNDNWSPLTYAAREGYTD----VCAELLDHGADLEHRDMGGWSPLMWA 230 (651)
Q Consensus 159 t~l~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~~t~L~~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~~t~L~~A 230 (651)
+.+...+..|+.+-...++ +.|..++.... .+.|...+..|..+ +++.+.+.|..++.... .+.+...
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~ 185 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVS 185 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHH
Confidence 3566778888877655554 46766544321 23556667888865 44445566877765432 2345566
Q ss_pred HHcCCHHHHHHHH----hcCCCCC
Q psy11819 231 SYKGHTDTVALLL----DKNADVN 250 (651)
Q Consensus 231 ~~~~~~~~v~~Ll----~~~~~~~ 250 (651)
++.|+.+-+..++ +.|..++
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcC
Confidence 7778876555554 4465554
No 117
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=31.92 E-value=36 Score=19.25 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=12.7
Q ss_pred HHHHhhcCcHHHHHHHHh
Q psy11819 18 LIHAVKGGHRGIVEALLK 35 (651)
Q Consensus 18 L~~A~~~g~~~~v~~Ll~ 35 (651)
+..||..|+++.++.|-.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 456777888887777643
No 118
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=31.81 E-value=29 Score=26.07 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.6
Q ss_pred cccCCccCCCCCchHHHHhhcCcHHHHHHHHhhcCCc
Q psy11819 4 DDVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 40 (651)
Q Consensus 4 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 40 (651)
+....++|+-=.-|+..|+.+|+.++++-||+-....
T Consensus 25 SI~L~KkDkLykDAietAa~S~d~elaEeLL~yFVe~ 61 (125)
T 3qil_A 25 SVELAKKDSLYKDAMQYASESKDTELAEELLQWFLQE 61 (125)
T ss_dssp CCCCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTS
T ss_pred HHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344567777778888888888888888887765554
No 119
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.97 E-value=3e+02 Score=22.52 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=43.9
Q ss_pred HHhhCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCH-HHHHHH
Q psy11819 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYT-DVCAEL 209 (651)
Q Consensus 131 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~-~iv~~L 209 (651)
...|+.++++..+..-+.. ...+......|+.+-++.+.+. .....+...+++.+...|+. +.++.|
T Consensus 45 L~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kla~i----A~~~g~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 45 LAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKMQNI----AQTREDFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHHHHH----HHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHHHHH----HHHCccHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555554433221 1133333445565555555331 01112223356666666664 455555
Q ss_pred HHcCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy11819 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244 (651)
Q Consensus 210 l~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~ 244 (651)
.+.|-- .-+...|-.+|..++.+.+++
T Consensus 113 ~~~~r~--------~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 113 AEGGSL--------PLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHTTCH--------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCh--------HHHHHHHHHcCcHHHHHHHHH
Confidence 544311 124445555666666666654
Done!