RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11819
(651 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 338 bits (870), Expect = e-110
Identities = 112/441 (25%), Positives = 179/441 (40%), Gaps = 41/441 (9%)
Query: 179 RGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDT 238
G +PL A+ G+ + LL GA ++ +PL A+ GHT+
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 239 VALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWAC 298
LL A VNA + L AA G+T +V LL++ A N+ G TPL A
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAA 121
Query: 299 RKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL--------------ADI-FSEPGLAT 343
R+GHVE V LL+ A+ + PL+ +A A + T
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 344 PLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWA 403
PL V + + +K +G P G TPL A
Sbjct: 182 PLHVA--VHHNN---------LDIVKLLLPRGGSPHSPA-----------WNGYTPLHIA 219
Query: 404 CRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGC 463
++ VE+ LL+ G + + + TPL +A E+V LLL + N N +K G
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL 279
Query: 464 TALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI 523
T L + ++G+ +A +L+ G ++ R G + L A G+ +V+ LL+ DV+
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339
Query: 524 PGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML--- 580
K + ++ A ++G+ I+ LLL + DG TPL A + + +L
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Query: 581 IDKKAKITAVDKRGDTVLHIA 601
D+ + + DK +
Sbjct: 400 TDETSFVLVSDKHRMSFPETV 420
Score = 336 bits (864), Expect = e-109
Identities = 107/440 (24%), Positives = 173/440 (39%), Gaps = 53/440 (12%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ + T L AA+ G + L+ A VNA+ D+ +PL AAR G+T++ LL
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
++ A+ G +PL A+ +GH +TV LL+K A + L AA G
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSS 330
+ LL+++ A N K G TPL A +++IV +LL G + Y
Sbjct: 161 VAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY------ 213
Query: 331 ALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLV 390
TPL + AK E + + G
Sbjct: 214 ------------TPLHIA--AKQNQ---------VEVARSLLQYGGSANAE--------- 241
Query: 391 MHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLE 450
G TPL A ++GH E+V +LL AN ++ TPL + V ++L++
Sbjct: 242 --SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 451 YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGI 510
+ V+A + G T L +A G ++ LL A +N + + G S L A + GH I
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359
Query: 511 VEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA---NPDLEIATKDGDTPLLK 567
V LLK + + T + A G + + +L + ++ K +
Sbjct: 360 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF--- 416
Query: 568 AVKTRNLEAIQMLIDKKAKI 587
E + ++D
Sbjct: 417 ------PETVDEILDVSEDE 430
Score = 328 bits (844), Expect = e-106
Identities = 116/425 (27%), Positives = 181/425 (42%), Gaps = 44/425 (10%)
Query: 212 HGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEI 271
G G +PL AS+ GH V LL + A N + L AA G+TE+
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 272 VALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
L++ AKVN K TPL A R GH +V +LL+ AN ++A + PL+
Sbjct: 63 AKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH--- 118
Query: 332 LADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVM 391
+A A+ G E + +
Sbjct: 119 ---------IA--------AREGH---------VETVLALLEKEASQACMTK-------- 144
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
G TPL A + G V + ++LL+ A+ + AG TPL VA N ++V+LLL
Sbjct: 145 ---KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
+ ++ +G T L IA K E+A LL G N + G + L A + GH +V
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKT 571
LL K + ++ K T ++ ++G+VP+ +L+ ++ T+ G TPL A
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 572 RNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGE 631
N++ ++ L+ +A + A K G + LH A + IV + + KN + G
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL---KNGASPNEVSSDGT 378
Query: 632 TPYSI 636
TP +I
Sbjct: 379 TPLAI 383
Score = 280 bits (718), Expect = 7e-88
Identities = 115/485 (23%), Positives = 189/485 (38%), Gaps = 72/485 (14%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
SG + L A GH IV+ LL++ ++ K+ L++ + L
Sbjct: 9 GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV--KVETPLHMAARAGHTEVAKYL 66
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
L + K+ +T ++ A G+ ++KLLL N + +AT L
Sbjct: 67 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-----AGHTPL---- 117
Query: 127 LQSYIA--EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
+IA E +++++ LE + + G T L AA+ GK+ L+ R A N
Sbjct: 118 ---HIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
A + +PL A D+ LL G G++PL A+ + + LL
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Query: 245 KNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
NA ++ L AA G+ E+VALL+ K A N+G+K G TPL ++GHV
Sbjct: 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVP 292
Query: 305 IVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKL 364
+ D+L+K G VD Y PL+ + + +G+
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVA--------------------SHYGN--------- 323
Query: 365 KEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDV 424
+ +K + D G +PL A ++GH +IV +LLK GA+ +
Sbjct: 324 IKLVKFLLQHQADVNAKTK-----------LGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 425 AGLYCWTPLLVATLGNFTEVVELL---LEYKPNVNALDKDGCTALTIACKDGYYEIAVLL 481
TPL +A + V ++L + V DK + E +
Sbjct: 373 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---------ETVDEI 423
Query: 482 LNSGA 486
L+
Sbjct: 424 LDVSE 428
Score = 240 bits (614), Expect = 1e-72
Identities = 98/456 (21%), Positives = 172/456 (37%), Gaps = 72/456 (15%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ ++ L A + GH + + LL+ V+ K + L+ + + L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT--PLHCAARIGHTNMVKLL 99
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
L+ N + + T ++ A +G+V + LL TK L
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-----KGFTPL---- 150
Query: 127 LQSYIA--EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
++A + + LE + NG T L A L V+ L+ RG +
Sbjct: 151 ---HVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
+ + ++PL AA++ +V LL +G + G +PL A+ +GH + VALLL
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 245 KNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
K A+ N ++ L A G+ + +L+K G V+ + G TPL A G+++
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIK 325
Query: 305 IVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKL 364
+V LL+ A+V+ Y PL+ A A+ G
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLH---QA-----------------AQQGH--------- 356
Query: 365 KEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDIL---LKAGAN 421
+ + + G P S GTTPL A R G++ + D+L +
Sbjct: 357 TDIVTLLLKNGASPN-----------EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 405
Query: 422 VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNA 457
V V+ + + E V+ +L+ +
Sbjct: 406 VLVSDKHRMSFP---------ETVDEILDVSEDEGE 432
Score = 217 bits (555), Expect = 4e-64
Identities = 68/239 (28%), Positives = 112/239 (46%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A +++IV +LL G + +TPL +A N EV LL+Y +
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
NA G T L +A ++G+ E+ LLL+ A N+ ++SG + L + GH + + L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
+K V VD + T ++ A GN+ ++K LL D+ TK G +PL +A + +
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
+ + +L+ A V G T L IA R ++ +V + +K +
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416
Score = 207 bits (529), Expect = 2e-60
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 1/181 (0%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
++G T L A+ G L V+ L+ RGA N + +PL AAR G+T+V LL
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
+ A + + +PL A+ GHT+ V LLL+ NA+ N + L AA G+ E
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSS 330
V L++K A K G TPL A + G V + ++LL+ A+ + AG PL+ +
Sbjct: 128 TVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186
Query: 331 A 331
Sbjct: 187 V 187
Score = 84.1 bits (209), Expect = 2e-17
Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 27/218 (12%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
G + L A + GH +V LL K + ++ K L++ L
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT--PLHLVAQEGHVPVADVL 297
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
+ + + T ++ A GN+ ++K LL D+ TK L
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK-----LGYSPLHQAA 352
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTR---GADV 183
Q + D + L+N + ++ +G T L A + G +S L + V
Sbjct: 353 QQ-----GHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDM 221
D S + E+LD D +
Sbjct: 407 LVSDKHRMSFP---------ETVDEILDVSEDEGEELI 435
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 269 bits (690), Expect = 7e-85
Identities = 86/394 (21%), Positives = 143/394 (36%), Gaps = 64/394 (16%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRE-LVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
+ L+ AA+ G + L + +A D +PL AA + L
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
L HGAD+ +D GG PL A GH + LLL A VNA + + L AA +
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYS 329
E+ +LL+ GA + + +G + + A E + K + L +
Sbjct: 138 EVCSLLLSHGADPTLVNC-HGKSAVDMAPTPELRERLTYEFKGHS-----------LLQA 185
Query: 330 SALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVL 389
+ AD+ ++K +
Sbjct: 186 AREADL------------------------------AKVKKTLALEIIN----------- 204
Query: 390 VMHLSYGTTPLVWACRKGH---VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVE 446
T L A H ++ ++LL+ GANV+ TPL VA +V+E
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 447 LLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506
+L ++ +NALD G TAL A G+ + LLL+ G+ +I G + +
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-- 322
Query: 507 HRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN 540
V+ +L + + + + A + G+
Sbjct: 323 ---AVQQILSESTPMRTSDVDYRL--LEASKAGD 351
Score = 265 bits (681), Expect = 1e-83
Identities = 92/402 (22%), Positives = 133/402 (33%), Gaps = 64/402 (15%)
Query: 173 VRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWAS 231
+L A L AAR G + LL + D +PL A+
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 232 YKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGT 291
V LLL ADV+A + L A G+ E+ LL+K GA VN D +
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQF 125
Query: 292 TPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYA 351
TPL A K VE+ +LL GA+ + + +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP-------------------- 165
Query: 352 KWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEI 411
+ E + + G + L A R+ +
Sbjct: 166 ---------------TPELRE----------------RLTYEFKGHSLL-QAAREADLAK 193
Query: 412 VDILLKAGANVDVAGLYCWTPLLVATL---GNFTEVVELLLEYKPNVNALDKDGCTALTI 468
V L T L A +V ELLL NVN +KD T L +
Sbjct: 194 VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
A + + ++ +L GA +N D G + L A GH LL D I +
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVK 570
TA E ++ +L+ + + T D D LL+A K
Sbjct: 314 FTAAQMGNE-----AVQQILSESTPMR--TSDVDYRLLEASK 348
Score = 181 bits (462), Expect = 9e-52
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 24/231 (10%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G PL AC GH E+ ++LLK GA V+ L+ +TPL A N EV LLL + +
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Query: 455 VNALDKDGCTALTIACKDGYYEIA---------------------VLLLNSGAYINIQDR 493
++ G +A+ +A E L Q +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209
Query: 494 SGDSNLIHAVKGGHRG---IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
S ++ L AV H + E LL+K +V+ K+ T ++ A E+ + ++++L
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
+ G T L +A +L+ ++L+ + + + +G T +
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320
Score = 177 bits (451), Expect = 3e-50
Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 25/247 (10%)
Query: 395 YGTTPLVWACRKGHV-EIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
Y L+ A R G+ +++ +L N + TPL +A N +V+LLL++
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+V+A DK G L AC G+YE+ LLL GA +N D + L A +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIA---------------- 557
LL D + K+AV A L + L+ A
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202
Query: 558 -----TKDGDTPLLKAVK---TRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTI 609
+ +T L AV + + ++L+ K A + +K T LH+A +
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV 262
Query: 610 VEVFIRN 616
+EV ++
Sbjct: 263 MEVLHKH 269
Score = 176 bits (450), Expect = 5e-50
Identities = 64/336 (19%), Positives = 107/336 (31%), Gaps = 74/336 (22%)
Query: 10 RDRSGDSNLIH-AVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
L+ A G ++ L V+ +
Sbjct: 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNC--------------------------HA 53
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
D K T ++ A V I++LLL D+ K +V L
Sbjct: 54 SDGRK-------STPLHLAAGYNRVRIVQLLLQHGADVHAKDK-----GGLVPL------ 95
Query: 129 SYIA--EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
+ A + + + L++ V + D T L AA K ++ L++ GAD
Sbjct: 96 -HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 187 DNDNWSPLTYAAREGYTDVC---------------------AELLDHGADLEHRDMGGWS 225
+ S + A + + L + +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 226 PLMWASYKGH---TDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
L A H LLL K A+VN ++ L AA R + +++ +L K GAK+
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
N D G T L A GH++ +LL G++ +
Sbjct: 274 NALDS-LGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Score = 168 bits (429), Expect = 4e-47
Identities = 59/319 (18%), Positives = 111/319 (34%), Gaps = 42/319 (13%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIP---GKVRKLSDALNVTDANDQRSTT 65
D + L A IV+ LL+ DV G V L+ + T
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV-----PLHNACSYGHYEVT 107
Query: 66 RNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC 123
LL + + T ++ A K V + LLL+ D + ++
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC-----HGKSAV- 161
Query: 124 YRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADV 183
+A E + + + G +L+ AA++ L+ V++ +
Sbjct: 162 ------DMAPTP--------ELRERLTYEFK---GHSLLQAAREADLAKVKKTLALEIIN 204
Query: 184 NAEDNDNWSPLTYAAREGY---TDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
+ + + L A + V LL GA++ ++ +PL A+ + H D +
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 241 LLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRK 300
+L A +NA + ++L AA G+ + LL+ G+ ++ G T
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL-QGFTAAQMG--- 320
Query: 301 GHVEIVDILLKAGANVDVA 319
E V +L + +
Sbjct: 321 --NEAVQQILSESTPMRTS 337
Score = 160 bits (407), Expect = 5e-44
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 25/227 (11%)
Query: 415 LLKAGANVDVAGLYCWTPLLV-ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473
L A + G Y LL A GN +++ LL N +A D T L +A
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69
Query: 474 YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
I LLL GA ++ +D+ G L +A GH + E LLK V+ + T ++
Sbjct: 70 RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129
Query: 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPL---------------------LKAVKTR 572
A K V + LLL+ D + G + + L+A +
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189
Query: 573 NLEAIQMLIDKKAKITAVDKRGDTVLHIAMR---ARSKTIVEVFIRN 616
+L ++ + + + +T LH A+ + K + E+ +R
Sbjct: 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Score = 143 bits (363), Expect = 6e-38
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 22/210 (10%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G + + A E + K + L A + +V + L +
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGH-----------SLLQAAREADLAKVKKTLAL-EII 203
Query: 455 VNALDKDGCTALTIACKDGYY---EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
+ TAL A + ++A LLL GA +N +++ + L A + H ++
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKT 571
E L K ++ +TA++ A G++ +LLL+ D I + G T
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-- 321
Query: 572 RNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
EA+Q ++ + + D D L A
Sbjct: 322 ---EAVQQILSESTPMRTSDV--DYRLLEA 346
Score = 85.6 bits (213), Expect = 4e-18
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRG-YTEIVALLVKKGAKVNVGDKVYGTTPLVW 296
+ L D +A G Y L+ AA G +++ALL + D +TPL
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-RKSTPLHL 64
Query: 297 ACRKGHVEIVDILLKAGANVDVA 319
A V IV +LL+ GA+V
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAK 87
Score = 49.0 bits (118), Expect = 2e-06
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 268 YTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ + L AK + + L A +++ +L N
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCH 52
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 258 bits (661), Expect = 2e-80
Identities = 71/428 (16%), Positives = 126/428 (29%), Gaps = 80/428 (18%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
+ D++N + AAR+G TD L++ G ++ G + L A G DT
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACR 299
L + + A T++V LV+ + G P
Sbjct: 70 KYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAKE-------RGQMPESLLNE 120
Query: 300 KGHVEIVDILLKAGANV-DVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKS 358
E+ + G++V G T L +
Sbjct: 121 CDEREVN----EIGSHVKHCKGQ---------------------TAL---HWC------V 146
Query: 359 FLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILL-- 416
L P+ E +K + G PT TPL+ A + E +D+++
Sbjct: 147 GLGPEYLEMIKILVQLGASPTAKDK-----------ADETPLMRAMEFRNREALDLMMDT 195
Query: 417 ---KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473
K+ +D A + L A L N+ +V +E +VN D + L ++ +
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA 255
Query: 474 YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
+ LL IQ V V
Sbjct: 256 MVLLTKELLQKTDVFLIQA--------------------CPYHNGTTVLPDRVVWLDFVP 295
Query: 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKR 593
A + +L+LL ++ + G +K K +M + A + +
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355
Query: 594 GDTVLHIA 601
++
Sbjct: 356 RARSSAVS 363
Score = 208 bits (533), Expect = 8e-62
Identities = 55/419 (13%), Positives = 116/419 (27%), Gaps = 75/419 (17%)
Query: 67 NLLDK---NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC 123
++ D N+ KS E ++ A KG ++ L+ I + +L
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR-----FGCTAL- 57
Query: 124 YRTLQSYIA--EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
++A +D+ + +G + A K V LV
Sbjct: 58 ------HLACKFGCVDTAKYLASVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108
Query: 182 DVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKG--HTDTV 239
P + +V + + G + L W G + + +
Sbjct: 109 ------ERGQMPESLLNECDEREV------NEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLV-----KKGAKVNVGDKVYGTTPL 294
+L+ A A + L+ A E + L++ K +++ +K G + L
Sbjct: 157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-QGNSHL 215
Query: 295 VWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWG 354
WA ++ ++ G +V++ +PLY L+ +
Sbjct: 216 HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY------------LS--------VRAA 255
Query: 355 SGK--SFLLPK--LKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVE 410
LL K + G + + A E
Sbjct: 256 MVLLTKELLQKTDVFLIQACPYHNGTTV-----------LPDRVVWLDFVPAAADPSKQE 304
Query: 411 IVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIA 469
++ +L + V + + V + L V + + ++
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 190 bits (485), Expect = 6e-55
Identities = 54/347 (15%), Positives = 98/347 (28%), Gaps = 54/347 (15%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
K D + A + G V L++ V I + AL++ T + L
Sbjct: 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT--ALHLACKFGCVDTAKYL 72
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+ SL + ++ AV ++ L+
Sbjct: 73 ASVGEVHSLWHGQKPIHLAVMANKTDLVVALV---------------------------- 104
Query: 129 SYIAEDNLDSLQTFLEN--KRTV---ADDRDDNGGTALMFAAQKGKLSF--VRELVTRGA 181
E E + + + G TAL + G ++ LV GA
Sbjct: 105 EGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164
Query: 182 DVNAEDNDNWSPLTYAAREGYTDVCAELLD-----HGADLEHRDMGGWSPLMWASYKGHT 236
A+D + +PL A + ++D L++ + G S L WA
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224
Query: 237 DTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD---------- 286
D ++ DVN N H L + + L++K +
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284
Query: 287 --KVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+V + A E++ +L + V +
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRK 331
Score = 171 bits (437), Expect = 4e-48
Identities = 42/247 (17%), Positives = 92/247 (37%), Gaps = 26/247 (10%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+ A RKG + V L++ G + + + T L +A + + L
Sbjct: 19 ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ G + +A ++ V L+ G + R + E
Sbjct: 79 HS--LWHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLNECDEREVNEI- 129
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGN--VPILKLLLTANPDLEIATKDGDTPLLKAVKTR 572
+ + +TA++ V G + ++K+L+ K +TPL++A++ R
Sbjct: 130 -----GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184
Query: 573 NLEAIQMLID-----KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN-NILLYRP 626
N EA+ +++D ++ +K+G++ LH A+ + + F+ + N+
Sbjct: 185 NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM----E 240
Query: 627 NKAGETP 633
+ P
Sbjct: 241 DNEHTVP 247
Score = 169 bits (430), Expect = 4e-47
Identities = 44/254 (17%), Positives = 94/254 (37%), Gaps = 21/254 (8%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G T L AC+ G V+ L G + + P+ +A + N T++V L+E
Sbjct: 52 FGCTALHLACKFGCVDTAKYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGA-- 107
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG--HRGIVE 512
+ G ++ + E+ +++ G + L V G + +++
Sbjct: 108 ----KERGQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP-----DLEIATKDGDTPLLK 567
L++ K +T + A+E N L L++ P L+ A K G++ L
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217
Query: 568 AVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPN 627
A+ + ++ + D L++++RA + + ++ ++ P
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277
Query: 628 KAGETPYSIDMNNQ 641
G T +
Sbjct: 278 HNGTTVLPDRVVWL 291
Score = 161 bits (410), Expect = 2e-44
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 26/242 (10%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATL--GNFTEVVELLLEYK 452
G P E+ V T L + E++++L++
Sbjct: 110 RGQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNS-----GAYINIQDRSGDSNLIHAVKGGH 507
+ A DK T L A + E L++++ ++ ++ G+S+L A+
Sbjct: 164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW 223
Query: 508 RGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEI----------- 556
+ ++ +DV++ E +Y +V V + K LL I
Sbjct: 224 EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283
Query: 557 --ATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+ A E +Q+L +K ++ G + + + + +
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343
Query: 615 RN 616
Sbjct: 344 AP 345
Score = 155 bits (393), Expect = 5e-42
Identities = 45/305 (14%), Positives = 89/305 (29%), Gaps = 46/305 (15%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
G + AV +V AL++ + ++ + D+R
Sbjct: 81 LWHGQKPIHLAVMANKTDLVVALVEGAKERG--------QMPESLLNECDEREVNEIGSH 132
Query: 71 KNKHKSLKERKTAVYTAVEKGN--VPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+ +TA++ V G + ++K+L+ K L
Sbjct: 133 VKH----CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-----ADETPL------ 177
Query: 129 SYIA--EDNLDSLQTFLENKRTVA----DDRDDNGGTALMFAAQKGKLSFVRELVTRGAD 182
A N ++L ++ + + D + G + L +A V G D
Sbjct: 178 -MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236
Query: 183 VNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE-------------HRDMGGWSPLMW 229
VN EDN++ PL + R + ELL + +
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296
Query: 230 ASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVY 289
A+ + + LL +K +V N + + + + + A V +
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR-S 355
Query: 290 GTTPL 294
Sbjct: 356 RARSS 360
Score = 143 bits (364), Expect = 5e-38
Identities = 49/224 (21%), Positives = 86/224 (38%), Gaps = 18/224 (8%)
Query: 414 ILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473
+ N + + VA T+ V L+E + ++ GCTAL +ACK G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 474 YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
+ A L + G ++ G + AV +V AL++ + +
Sbjct: 65 CVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG------QMPES 116
Query: 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN--LEAIQMLIDKKAKITAVD 591
E + ++ + G T L V LE I++L+ A TA D
Sbjct: 117 LLNECDEREVNEI------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170
Query: 592 KRGDTVLHIAMRARSKTIVEVFI--RNPKNNILLYRPNKAGETP 633
K +T L AM R++ +++ + K+++ L NK G +
Sbjct: 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214
Score = 116 bits (294), Expect = 1e-28
Identities = 34/269 (12%), Positives = 66/269 (24%), Gaps = 39/269 (14%)
Query: 8 SKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRK--LSDALNVTDANDQRSTT 65
G + R + E + + L V +
Sbjct: 105 EGAKERGQMPESLLNECDEREVNEI------GSHVKHCKGQTALHWC--VGLGPEYLEMI 156
Query: 66 RNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC 123
+ L+ + K +T + A+E N L L++ P L
Sbjct: 157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL- 215
Query: 124 YRTLQSYIA--EDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVRELVTR 179
+ A + D F+E D D+ L + + + +EL+ +
Sbjct: 216 ------HWAILINWEDVAMRFVEMG---IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266
Query: 180 GA-------------DVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSP 226
V + + AA +V L + ++ G
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGG 326
Query: 227 LMWASYKGHTDTVALLLDKNADVNAHGNY 255
+ K + L +A V
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355
Score = 96.1 bits (240), Expect = 1e-21
Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 36/227 (15%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVD---VDIPGKVRKLSDALNVTDANDQRSTT 65
+D++ ++ L+ A++ +R ++ ++ + + ++ + L+ +
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227
Query: 66 RNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC 123
++ + + E +Y +V V + K LL
Sbjct: 228 MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT-------------------- 267
Query: 124 YRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADV 183
D N TV + AA K ++ L + +V
Sbjct: 268 ----------DVFLIQACPYHNGTTV-LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWA 230
N ++ V L A + R +
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 32.5 bits (75), Expect = 0.43
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 578 QMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
M K D +H+A R V I
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLI 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 233 bits (596), Expect = 9e-72
Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 50/341 (14%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
D G + + V + + +D L A G T+ LL+
Sbjct: 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLER 62
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
GAD+ + ++ G + L A + D V L++ A++N N L AA GY +I
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA 122
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILL-KAGANVDVAGLWAYMPLYSSA 331
L+ +GA V + G TPL A + E++ + + G +++ A +
Sbjct: 123 EYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM---- 177
Query: 332 LADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVM 391
L++ + ++ V
Sbjct: 178 --------------------------------LRDARQWLNSGHIN-----------DVR 194
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
H G T L A KG+ E++ +L++A +V++ WTPL A E +L+E
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
++ A++K G TA +A +D + L + +
Sbjct: 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 182 bits (464), Expect = 1e-52
Identities = 68/340 (20%), Positives = 120/340 (35%), Gaps = 49/340 (14%)
Query: 282 VNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGL 341
+ + D G ++ + V + L
Sbjct: 1 MKMADA-KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA------------- 46
Query: 342 ATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLV 401
G EE+ +G D + G T L
Sbjct: 47 --------ACSSGD---------TEEVLRLLERGADINYA-----------NVDGLTALH 78
Query: 402 WACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKD 461
AC +V++V L++ GAN++ W PL A + ++ E L+ +V A++ +
Sbjct: 79 QACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDV 521
G T L IA ++ E+ +N Q ++ + R + L +++
Sbjct: 139 GDTPLDIAEEEAMEELLQNE------VNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581
K TA++ A KG +LKLL+ A D+ I DG TPL A EA ++L+
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 582 DKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI-RNPKNN 620
+ + AV+K G T +A + E+ +N ++
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
Score = 174 bits (443), Expect = 1e-49
Identities = 58/346 (16%), Positives = 111/346 (32%), Gaps = 61/346 (17%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
++K G+ L+ + ++ + + + +
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD-----------GAVFLAACSSGDTE 54
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
+ LE + + + +G TAL A + V+ LV GA++N DN+ W PL A
Sbjct: 55 EVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113
Query: 198 AREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN-ADVNAHGNYH 256
A GY D+ L+ GA + + G +PL A + + + +++ D+ A
Sbjct: 114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA----- 168
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
+ + L K G T L A KG+ E++ +L++A +V
Sbjct: 169 --ARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 317 DVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGV 376
++ + PL+++ A WG +E +
Sbjct: 226 NIKDYDGWTPLHAA--------------------AHWGK---------EEACRILVENLC 256
Query: 377 DPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANV 422
D G T A + ++ K
Sbjct: 257 DME-----------AVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291
Score = 169 bits (430), Expect = 7e-48
Identities = 58/258 (22%), Positives = 102/258 (39%), Gaps = 21/258 (8%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
G L AC G E V LL+ GA+++ A + T L A + + ++V+ L+E
Sbjct: 39 DDGAVFL-AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
N+N D +G L A GY +IA L++ GA++ + GD+ L A + +++
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
+ + VDI + A + L + + + K G T L A
Sbjct: 158 EVNR-QGVDI-----EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 574 LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR-----NPKNNILLYRPNK 628
E +++LI + + D G T LH A + + + N
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK-------- 263
Query: 629 AGETPYSI-DMNNQKSIL 645
G+T + + D + +
Sbjct: 264 VGQTAFDVADEDILGYLE 281
Score = 149 bits (379), Expect = 9e-41
Identities = 50/304 (16%), Positives = 90/304 (29%), Gaps = 61/304 (20%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSD---ALNVTDANDQRSTTRNLLDK--N 72
+ A G V LL++ D++ D AL+ +D + L++ N
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANV-----DGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 73 KHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA 132
++ E ++ A G + I + L++ +
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA------------------------ 134
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
+ G T L A ++ ++ V R D +
Sbjct: 135 --------------------VNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEA 168
Query: 193 PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
R D L + G + L A+ KG+T+ + LL+ DVN
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228
Query: 253 GNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
+ L AA G E +LV+ + +K G T A + ++ K
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK-VGQTAFDVADEDILGYLEELQKKQ 287
Query: 313 GANV 316
Sbjct: 288 NLLH 291
Score = 139 bits (353), Expect = 3e-37
Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 6/200 (3%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+ G PL A G+++I + L+ GA+V TPL +A E+++ + +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ- 162
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
D A + + L + +SG + L A G+ +++
Sbjct: 163 -----GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
L++ DV+I + T ++ A G ++L+ D+E K G T A +
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 574 LEAIQMLIDKKAKITAVDKR 593
++ + + ++
Sbjct: 278 GYLEELQKKQNLLHSEKREK 297
Score = 120 bits (303), Expect = 2e-30
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 3/184 (1%)
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ D + G + ++ G + A G V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSSGDTEEVLRL 59
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
L++ D++ + TA++ A NV ++K L+ ++ +G PL A L
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPY 634
+ + LI + A + AV+ GDT L IA + +++ + +I K E
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--AARKEEERIM 177
Query: 635 SIDM 638
D
Sbjct: 178 LRDA 181
Score = 99.1 bits (248), Expect = 4e-23
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
++ D + G + + K + + + A G TE V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+++GA +N + G T L AC +V++V L++ GAN++ ++PL+++A
Sbjct: 60 LERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114
Score = 65.6 bits (161), Expect = 9e-12
Identities = 29/213 (13%), Positives = 52/213 (24%), Gaps = 77/213 (36%)
Query: 8 SKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRN 67
+++ ++ + R + L +++
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR------------------------- 194
Query: 68 LLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTL 127
K TA++ A KG +LKLL+ A D+ I
Sbjct: 195 ---HAKS-----GGTALHVAAAKGYTEVLKLLIQARYDVNI------------------- 227
Query: 128 QSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED 187
+D +G T L AA GK R LV D+ A +
Sbjct: 228 -------------------------KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
+ A + + +
Sbjct: 263 KVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 45.6 bits (109), Expect = 2e-05
Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 29/187 (15%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ GD+ L A + +++ + + VDI A + R + L
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNR-QGVDIE-------AARKEEERIMLRDARQWL 185
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
N + K TA++ A KG +LKLL+ A D+ I D L
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-----DGWTPL---- 236
Query: 127 LQSYIA--EDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVRELVTRGAD 182
+ A ++ + +EN D + G TA A + +
Sbjct: 237 ---HAAAHWGKEEACRILVENL---CDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Query: 183 VNAEDND 189
+ +
Sbjct: 291 HSEKREK 297
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 221 bits (567), Expect = 9e-68
Identities = 73/331 (22%), Positives = 119/331 (35%), Gaps = 56/331 (16%)
Query: 164 AAQKGKLSFVRELVTRGADVNAEDN-----DNWSPLTYAAREGYTDVCAELLDHGADLEH 218
+ LV RG+ + + D D P G LL + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56
Query: 219 RDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
WSP+ A+ GH ++ L+ + VN H+S L A G+ V +L+K
Sbjct: 57 VS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSE 338
GA+VN TPL AC G + V++LL+ GA + E
Sbjct: 115 GAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGA-------------------SVQPE 154
Query: 339 PGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTT 398
LA+P+ A+ G E + G + +S+ T
Sbjct: 155 SDLASPIHEA--ARRGH---------VECVNSLIAYGGNID-----------HKISHLGT 192
Query: 399 PLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNAL 458
PL AC V LL++GA+V+ G +PL E+ LL+++ + A
Sbjct: 193 PLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+ +G + + + + L GA +
Sbjct: 252 NAEGKRPVELVPPESP-LAQLFLEREGASLP 281
Score = 207 bits (530), Expect = 2e-62
Identities = 70/324 (21%), Positives = 114/324 (35%), Gaps = 57/324 (17%)
Query: 197 AAREGYTDVCAELLDHGADLEHRDMG-----GWSPLMWASYKGHTDTVALLLDKNADVNA 251
+ + + L+ G+ + D G P + G LL +A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56
Query: 252 HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
++ S + AA G+ + L+ +G VN+ +PL AC GH+ V ILLK
Sbjct: 57 VSDW--SPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLK 113
Query: 312 AGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHF 371
GA V+ + PL+ A GS + +
Sbjct: 114 HGAQVNGVTADWHTPLF------------NA--------CVSGS---------WDCVNLL 144
Query: 372 ERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWT 431
+ G S +P+ A R+GHVE V+ L+ G N+D + T
Sbjct: 145 LQHGASVQPE------------SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT 192
Query: 432 PLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQ 491
PL +A V+ LLE +VN K + L + E+A LL++ GA +
Sbjct: 193 PLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 492 DRSGDSNLIHAVKGGHRGIVEALL 515
+ G + + + L
Sbjct: 252 NAEGKRPVELVPPESP--LAQLFL 273
Score = 194 bits (496), Expect = 2e-57
Identities = 56/314 (17%), Positives = 97/314 (30%), Gaps = 55/314 (17%)
Query: 21 AVKGGHRGIVEALLKKYVDVDIPGKVRKLSD---ALNVTDANDQRSTTRNLLDKNKHKSL 77
H L+ + + + D D R + L+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD-- 59
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+ ++ A G+ L+ L++ +
Sbjct: 60 ---WSPMHEAAIHGHQLSLRNLISQGWAV------------------------------- 85
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
+ + + L A G LS V+ L+ GA VN D +PL A
Sbjct: 86 -------------NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA 132
Query: 198 AREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHI 257
G D LL HGA ++ SP+ A+ +GH + V L+ +++ ++
Sbjct: 133 CVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 191
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ L A V L++ GA VN G +PL R E+ +L+ GA+
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGK--GQDSPLHAVVRTASEELACLLMDFGADTQ 249
Query: 318 VAGLWAYMPLYSSA 331
P+
Sbjct: 250 AKNAEGKRPVELVP 263
Score = 192 bits (491), Expect = 9e-57
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 3/221 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
+P+ A GH + L+ G V++ +PL A LG V++LL++ V
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N + D T L AC G ++ LLL GA + + S + A + GH V +L+
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLI 177
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
++D T +Y A E +K LL + D+ K D+PL V+T + E
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEE 236
Query: 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
+L+D A A + G + + S R
Sbjct: 237 LACLLMDFGADTQAKNAEGKRPVELVPP-ESPLAQLFLERE 276
Score = 179 bits (458), Expect = 6e-52
Identities = 55/311 (17%), Positives = 96/311 (30%), Gaps = 81/311 (26%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
S S + A GH+ + L+ + V N+
Sbjct: 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-------------NIIT----------- 89
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+ + ++ A G++ +K+LL +
Sbjct: 90 ---------ADHVSPLHEACLGGHLSCVKILLKHGAQV---------------------- 118
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
+ + T L A G V L+ GA V ++
Sbjct: 119 ----------------------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ES 155
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D SP+ AAR G+ + L+ +G +++H+ +PL A V LL+ AD
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
VN G S L E+ LL+ GA + G P+ + + +
Sbjct: 216 VNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA-EGKRPVELVPPESPLAQL-F 272
Query: 309 LLKAGANVDVA 319
L + GA++
Sbjct: 273 LEREGASLPKP 283
Score = 167 bits (426), Expect = 2e-47
Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 12/238 (5%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G+ P G LL D W+P+ A + + L+ V
Sbjct: 33 GSKPAGPRDFPGIR-----LLSNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAV 85
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N + D + L AC G+ +LL GA +N + L +A G V LL
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
+ V P + + ++ A +G+V + L+ +++ TPL A + +
Sbjct: 146 QHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204
Query: 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
++ L++ A + K D+ LH +R S+ + + + N G+ P
Sbjct: 205 CVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLM---DFGADTQAKNAEGKRP 258
Score = 164 bits (418), Expect = 2e-46
Identities = 60/304 (19%), Positives = 105/304 (34%), Gaps = 38/304 (12%)
Query: 297 ACRKGHVEIVDILLKAGA-----NVDVAGLWAYMPLYSSALADIFSEPGLA--------T 343
H L+ G+ + G+ P I +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 344 PLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWA 403
P+ A G + +++ QG + +PL A
Sbjct: 62 PMHEA--AIHGH---------QLSLRNLISQGWAVNII-----------TADHVSPLHEA 99
Query: 404 CRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGC 463
C GH+ V ILLK GA V+ TPL A + + V LLL++ +V + D
Sbjct: 100 CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLA 158
Query: 464 TALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI 523
+ + A + G+ E L+ G I+ + + L A + R V+ LL+ DV+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Query: 524 PGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK 583
GK + + ++ V + + LL+ D + +G P+ L + L +
Sbjct: 219 -GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLERE 276
Query: 584 KAKI 587
A +
Sbjct: 277 GASL 280
Score = 157 bits (400), Expect = 7e-44
Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 11/233 (4%)
Query: 403 ACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
H L+ G+++ + + + + L P +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGK-QGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSD 59
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
+ + A G+ L++ G +NI S L A GGH V+ LLK V+
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLID 582
+ T ++ A G+ + LLL ++ D +P+ +A + ++E + LI
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 178
Query: 583 KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKA--GETP 633
I T L++A + + V+ + + + N+ ++P
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD------VNQGKGQDSP 225
Score = 98.7 bits (247), Expect = 5e-23
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 468 IACKDGYYEIAVLLLNSGAYINIQD-----RSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
+ ++ + L+ G+++ D G G R + L+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD----- 55
Query: 523 IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLID 582
+ ++ A G+ L+ L++ + I T D +PL +A +L +++L+
Sbjct: 56 --AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 583 KKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR-----NPKNNILLYRPNKAGETP 633
A++ V T L A + S V + ++ P+++ +P
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD---------LASP 160
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 213 bits (546), Expect = 1e-64
Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 38/308 (12%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH-ISSLIWAAGRGYTEIVALLVKKGAK 281
L+ A D V LL+ A+VN + L A +IV LL++ GA
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 282 VNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGL 341
+ K G TP + A G V+++ + L GA+V+ + + +
Sbjct: 65 PVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA----------- 112
Query: 342 ATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLV 401
A +G + +K ++G + G T L+
Sbjct: 113 ---------AVYGK---------VKALKFLYKRGANVN-LRRKTKEDQERLRKGGATALM 153
Query: 402 WACRKGHVEIVDILL-KAGANVDVAGLYCWTPLLVAT----LGNFTEVVELLLEYKPNVN 456
A KGHVE++ ILL + GA+V+ L+ A + + LLL++ +VN
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213
Query: 457 ALDKDGCTALTIACKDGYYEIA-VLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+ G T L +A + + + LL IN D G + L+ AV+ + I E L
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Query: 516 KKYVDVDI 523
K+ D
Sbjct: 274 KRGASTDC 281
Score = 186 bits (474), Expect = 3e-54
Identities = 62/248 (25%), Positives = 115/248 (46%), Gaps = 21/248 (8%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A + +IV++LL+ GA+ + TP L+A + ++++L L +
Sbjct: 38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN----------LIHAVK 504
VN D G TA A G + L GA +N++ ++ + L+ A +
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 505 GGHRGIVEALLKKY-VDVDIPGKERKTAVYTAVEKGNVP----ILKLLLTANPDLEIATK 559
GH +++ LL + DV+ + A+ A+ + I LLL D+ + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 560 DGDTPLLKAVKTRNLEAIQMLIDKK-AKITAVDKRGDTVLHIAMRARSKTIVEVFIR--- 615
G TPL+ AV+ ++L +Q L++++ +I D G T L +A+ + K I E+ +
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Query: 616 --NPKNNI 621
+ + +
Sbjct: 278 STDCGDLV 285
Score = 185 bits (472), Expect = 5e-54
Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 18/254 (7%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYC-WTPLLVATLGNFTEVVELLLEYKPN 454
L+ A + V++V LL+ GANV+ WTPL A + ++VELLL + +
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
K+G T +A G ++ L L+ GA +N D G + + A G ++ L
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 515 LKKYVDVDIPGKER----------KTAVYTAVEKGNVPILKLLLT-ANPDLEIATKDGDT 563
K+ +V++ K + TA+ A EKG+V +LK+LL D+ G
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 564 PLLKAV----KTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKN 619
L+ A+ + +L+D A + +RG T L +A+ + +V+ +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 620 NILLYRPNKAGETP 633
I + G+T
Sbjct: 245 EI--NDTDSDGKTA 256
Score = 182 bits (465), Expect = 5e-53
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN-WSPLTYAAREGYTDVCAELLDH 212
L+ A Q + V++L+ GA+VN ++ + W+PL A + D+ LL H
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
GAD R G +P + A+ G + L L K ADVN Y ++ + AA G + +
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 273 ALLVKKGAKVNVGDK---------VYGTTPLVWACRKGHVEIVDILL-KAGANVD 317
L K+GA VN+ K G T L+ A KGHVE++ ILL + GA+V+
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Score = 179 bits (457), Expect = 7e-52
Identities = 78/322 (24%), Positives = 118/322 (36%), Gaps = 64/322 (19%)
Query: 14 GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDK-- 71
+ LI AV+ +V+ LL+ +V+ + + L+ + LL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRHGA 63
Query: 72 NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYI 131
+ K T A G+V +LKL L+ D+
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE----------------------- 100
Query: 132 AEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN- 190
D G TA M AA GK+ ++ L RGA+VN
Sbjct: 101 ---------------------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 191 ---------WSPLTYAAREGYTDVCAELLDH-GADLEHRDMGGWSPLMWASYKGHTDT-- 238
+ L AA +G+ +V LLD GAD+ D G + L+ A
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 239 --VALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV-ALLVKKGAKVNVGDKVYGTTPLV 295
LLLD ADVN G + LI A + + +V LL ++ ++N D G T L+
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALL 258
Query: 296 WACRKGHVEIVDILLKAGANVD 317
A +I ++L K GA+ D
Sbjct: 259 LAVELKLKKIAELLCKRGASTD 280
Score = 173 bits (441), Expect = 1e-49
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 151 DDRDDNGG-TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
+ +++ GG T L A Q + V L+ GAD + +P AA G +
Sbjct: 32 NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISS---------- 259
L GAD+ D G++ M A+ G + L + A+VN
Sbjct: 92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151
Query: 260 LIWAAGRGYTEIVALLV-KKGAKVNVGDKVYGTTPLVWACRKGHV----EIVDILLKAGA 314
L+ AA +G+ E++ +L+ + GA VN D G L+ A I +LL GA
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 315 NVDV 318
+V+V
Sbjct: 211 DVNV 214
Score = 139 bits (353), Expect = 3e-37
Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 9/254 (3%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
+V+ + + G + L +AV+ IVE LL+ D + K +
Sbjct: 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT--PFLLAAIAGSVKL 87
Query: 65 TRNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSL 122
+ L K + ++ TA A G V LK L ++ + KT + +
Sbjct: 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Query: 123 CYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRE----LVT 178
L + +++ L+ L+ + D+ G AL+ A S V L+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 179 RGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH-GADLEHRDMGGWSPLMWASYKGHTD 237
GADVN +PL A + + + LL+ ++ D G + L+ A
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 238 TVALLLDKNADVNA 251
LL + A +
Sbjct: 268 IAELLCKRGASTDC 281
Score = 125 bits (317), Expect = 2e-32
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 13/186 (6%)
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN-LIHAVKGGHRGIVEALLKK 517
+ L A ++ ++ LL GA +N Q+ G L +AV+ IVE LL+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAI 577
D + K T A G+V +LKL L+ D+ G T ++A ++A+
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 578 QMLIDKKAKITAVDK----------RGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPN 627
+ L + A + K G T L A ++++ + ++ +
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV--NACD 179
Query: 628 KAGETP 633
G
Sbjct: 180 NMGRNA 185
Score = 91.4 bits (228), Expect = 2e-20
Identities = 51/229 (22%), Positives = 85/229 (37%), Gaps = 27/229 (11%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
R ++G + + A G +++ L K DV+ A + + L
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF--TAFMEAAVYGKVKALKFL 124
Query: 69 LD-------KNKHKSLKER-----KTAVYTAVEKGNVPILKLLLT-ANPDLEIATKTLPR 115
+ K K +ER TA+ A EKG+V +LK+LL D+
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN---- 180
Query: 116 SDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFV 173
+L + L S D L++ AD R + G T L+ A +K L V
Sbjct: 181 -MGRNALIHALLSSDD-SDVEAITHLLLDHG---ADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 174 RELVTR-GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDM 221
+ L+ + ++N D+D + L A + L GA + D+
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 54.0 bits (131), Expect = 4e-08
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 557 ATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKR-GDTVLHIAMRARSKTIVEVFIR 615
A + + L+KAV+ +++ +Q L++ A + ++ G T LH A++ + IVE+ +R
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 616 N 616
+
Sbjct: 61 H 61
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 209 bits (534), Expect = 5e-63
Identities = 63/305 (20%), Positives = 96/305 (31%), Gaps = 31/305 (10%)
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD---VNAHGNYHISSLIWAAGRGYTEIV 272
+ G + L A H + LL +A ++ + ++L AA G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
L GA V V ++ G T L ACR +LL+ + Y +
Sbjct: 62 EKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDA----SDTYLTQS 116
Query: 333 ADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMH 392
D + A + ++ EE E +
Sbjct: 117 QDCTPDTSHAPAA---VDSQPN--------PENEEEPRDEDWRLQLEAENY--------- 156
Query: 393 LSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYC-WTPLLVATLGNFTEVVELLLEY 451
G TPL A E+V +L AGA+++ C TPL +A V+ELLL+
Sbjct: 157 --DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
+ A G T L A +A LL GA S +
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Query: 512 EALLK 516
+ +
Sbjct: 275 DEGDE 279
Score = 178 bits (455), Expect = 1e-51
Identities = 49/257 (19%), Positives = 84/257 (32%), Gaps = 21/257 (8%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGAN---VDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
G T L A H +D LL A +D+ T L +A + VE L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN------------- 498
V ++ G TAL +AC+ + A +LL
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 499 -LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIA 557
+ + + ++ + T ++ AV + +++LL A DL
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 558 TKD-GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
G TPL AV+ + +++L+ A TA G T L A+ + + + +
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Query: 617 PKNNILLYRPNKAGETP 633
+P
Sbjct: 248 -GAPE--PEDGGDKLSP 261
Score = 173 bits (440), Expect = 2e-49
Identities = 48/232 (20%), Positives = 75/232 (32%), Gaps = 15/232 (6%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G T L A G V+ L AGA V VA T L +A +LL+ +P+
Sbjct: 44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
Query: 455 VNALDKDGCT--------------ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLI 500
D A + + E + + ++ G + L
Sbjct: 104 HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163
Query: 501 HAVKGGHRGIVEALLKKYVDVDIPGKER-KTAVYTAVEKGNVPILKLLLTANPDLEIATK 559
AV +V L D++ P +T ++ AVE +L+LLL A D
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY 223
Query: 560 DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVE 611
G TPL A+ N ++L A + + +
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275
Score = 172 bits (438), Expect = 4e-49
Identities = 55/308 (17%), Positives = 88/308 (28%), Gaps = 41/308 (13%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKK---YVDVDIPGKVRKLSDALNVTDANDQRSTTRN 67
GD+ L AV H ++ LL + +D+ + + AL++ + ST
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQT--ALHLAAILGEASTVEK 63
Query: 68 LLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYR 125
L + + TA++ A +LL P + S
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS------- 116
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRE-LVTRGADVN 184
D D +Q + +
Sbjct: 117 ------------------------QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD-MGGWSPLMWASYKGHTDTVALLL 243
AE+ D +PL A ++ L D GADL + G +PL A + LLL
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHV 303
AD A + L A R + LL GA +P +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG-DKLSPCSSSGSDSDS 271
Query: 304 EIVDILLK 311
+ D +
Sbjct: 272 DNRDEGDE 279
Score = 168 bits (427), Expect = 1e-47
Identities = 46/196 (23%), Positives = 67/196 (34%), Gaps = 14/196 (7%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
D ++D G TAL AA G+ S V +L GA V + + L A R LL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 211 DHGADLEHRDMGGWSP--------------LMWASYKGHTDTVALLLDKNADVNAHGNYH 256
+ + + + D + A
Sbjct: 99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
+ L A E+V LL GA +N + G TPL A ++++LLKAGA+
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 317 DVAGLWAYMPLYSSAL 332
PL S+ L
Sbjct: 219 TARMYGGRTPLGSALL 234
Score = 120 bits (304), Expect = 1e-30
Identities = 21/152 (13%), Positives = 36/152 (23%), Gaps = 16/152 (10%)
Query: 183 VNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEH---RDMGGWSPLMWASYKGHTDTV 239
D + L A + LL A E+ ++ G + L A+ G TV
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN-------------VGD 286
L A V ++L A +L++
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
V + E ++
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153
Score = 119 bits (302), Expect = 2e-30
Identities = 38/250 (15%), Positives = 61/250 (24%), Gaps = 57/250 (22%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTD----------- 57
+R G + L A + LL+ L+ + + T
Sbjct: 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 58 -ANDQRSTTRNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLP 114
N + D + T ++ AV + +++LL A DL
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP--- 189
Query: 115 RSDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVR 174
G T L A + S +
Sbjct: 190 ----------------------------------------TCGRTPLHLAVEAQAASVLE 209
Query: 175 ELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKG 234
L+ GAD A +PL A + L HGA SP +
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269
Query: 235 HTDTVALLLD 244
+D +
Sbjct: 270 DSDNRDEGDE 279
Score = 117 bits (295), Expect = 2e-29
Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 29/201 (14%)
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGA---YINIQDRSGDSNLIHAVKGGHRGIV 511
+ +DG TAL +A + LL A Y+++Q+ G + L A G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTP------- 564
E L V + + TA++ A +LL P D
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 565 -------LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR-- 615
+ + E D + ++ A + G T LH+A+ + +V +
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 616 ---NPKNNILLYRPNKAGETP 633
N G TP
Sbjct: 182 ADLNKPE-------PTCGRTP 195
Score = 68.0 bits (167), Expect = 1e-12
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
G TPL A + + + +L GA G +P + + ++ + EY
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 32.1 bits (74), Expect = 0.42
Identities = 16/172 (9%), Positives = 33/172 (19%), Gaps = 77/172 (44%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
D++ G + L AV+ ++E LLK D
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA---------------------- 220
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
+ +T + +A+ + N + +LL
Sbjct: 221 ------RMYGG-----RTPLGSALLRPNPILARLLRAHGAPEPE---------------- 253
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVREL 176
+ + + E
Sbjct: 254 ----------------------------DGGDKLSPCSSSGSDSDSDNRDEG 277
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 198 bits (507), Expect = 1e-60
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 1/164 (0%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
++ A +G++ ++ + + +N D + ++PL +AA G V LL +GAD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ G S L A KG+TD V +LLD DVN + + L++A + + V +L
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
++ GA + G + A G+ + ++ +
Sbjct: 122 LESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164
Score = 164 bits (417), Expect = 1e-47
Identities = 42/137 (30%), Positives = 66/137 (48%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ D+ G T LM+AA G+++ V L+ GAD S L+ A +GYTD+ LL
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
D G D+ D G +PL++A + H V +LL+ AD + +S+ A GY
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149
Query: 271 IVALLVKKGAKVNVGDK 287
+ ++ K+ K
Sbjct: 150 VQQVIESHLLKLLQNIK 166
Score = 163 bits (416), Expect = 2e-47
Identities = 40/165 (24%), Positives = 74/165 (44%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
+ + +G + + ++ ++ +TPL+ A VVE LL+ +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
L K +AL++AC GY +I +LL+ G +N D +G + L++AV G H V+ LL
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKD 560
+ D I ++ AV G + +++ + L K+
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 148 bits (377), Expect = 5e-42
Identities = 39/163 (23%), Positives = 63/163 (38%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+ + +E + +N D++G T L A G + LL +GA
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ + +S L A G+ IV+ LL VDV+ T + AV +V +K+LL
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDK 592
+ D I T G + AV Q++ K+ K
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 145 bits (370), Expect = 4e-41
Identities = 40/133 (30%), Positives = 70/133 (52%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL+WA G + +V+ LL+ GA+ + G + L +A +T++V++LL+ +
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VN D +G T L A + + +LL SGA I+ SG +++ AV G+R + + +
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Query: 515 LKKYVDVDIPGKE 527
+ + KE
Sbjct: 155 ESHLLKLLQNIKE 167
Score = 129 bits (328), Expect = 4e-35
Identities = 35/234 (14%), Positives = 63/234 (26%), Gaps = 77/234 (32%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
+ G + +++ + N TD
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVI-------------NHTD-------------------- 33
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+E T + A G + +++ LL D ++
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---------------------------- 65
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
+AL A KG V+ L+ G DVN D + +PL YA
Sbjct: 66 ----------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109
Query: 198 AREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
+ LL+ GAD G++ + A G+ ++ +
Sbjct: 110 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Score = 93.6 bits (234), Expect = 2e-22
Identities = 40/212 (18%), Positives = 61/212 (28%), Gaps = 77/212 (36%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
D G + L+ A G +VE LL+ D +
Sbjct: 31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-------------QLLG----------- 66
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
K R++A+ A KG I+K+LL D+
Sbjct: 67 ---------KGRESALSLACSKGYTDIVKMLLDCGVDVNE-------------------- 97
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
D NGGT L++A + V+ L+ GAD E +
Sbjct: 98 ------------------------YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
++ + A GY V + H L
Sbjct: 134 SGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 84.4 bits (210), Expect = 3e-19
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 259 SLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
S+ A +G +A +++ +N D+ G TPL+WA G + +V+ LL+ GA+ +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 319 AGLWAYMPLYSSA 331
G L +
Sbjct: 65 LGKGRESALSLAC 77
Score = 55.9 bits (136), Expect = 2e-09
Identities = 28/185 (15%), Positives = 45/185 (24%), Gaps = 78/185 (42%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
D + +S L A G+ IV+ LL VDV N D
Sbjct: 61 DPQLL-GKGRESALSLACSKGYTDIVKMLLDCGVDV-------------NEYD------- 99
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
T + AV +V +K+LL + D I
Sbjct: 100 -------------WNGGTPLLYAVHGNHVKCVKMLLESGADPTIE--------------- 131
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
D+G ++ A G S + + + +
Sbjct: 132 -----------------------------TDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Query: 185 AEDND 189
+
Sbjct: 163 QNIKE 167
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 195 bits (498), Expect = 3e-59
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Query: 157 GGTALMFAAQKGKLSFVRELVTRGAD-VNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
++ A +G+L ++E + +G + VN D ++PL +A+ G + LL+ GAD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
S L AS G+TD V LLL+++ D+N + + L++A + + V L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
+ +GA + G TP+ A G+ ++ ++ + +
Sbjct: 122 LARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHILKLFQS 164
Score = 172 bits (438), Expect = 1e-50
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Query: 135 NLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
LD L+ L + + D+ G T L++A+ G++ VR L+ GAD + + S L
Sbjct: 14 ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL 73
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGN 254
+ A+ GYTD+ LL+ D+ D G +PL++A H V LL + AD+ +
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133
Query: 255 YHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTP 293
+ + A GY ++ ++ K+ + P
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIENHILKLFQSNL-VPADP 171
Score = 166 bits (424), Expect = 1e-48
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGAN-VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+ + +G ++ + L+ G N V+ +TPL+ A+ E V LLE+ +
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ L K+ +AL++A GY +I LLL INI D +G + L++AV+G H VEAL
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTP 564
L + D+ T + AV G + +++ L + P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 161 bits (410), Expect = 1e-46
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEH-RDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ + A +G D E L G +L + D G++PL+WAS G +TV LL+ AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
+ S+L A+ GYT+IV LL+++ +N+ D G TPL++A R HV+ V+
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEA 120
Query: 309 LLKAGANVDVAGLWAYMPLYSSA 331
LL GA++ Y P+ +
Sbjct: 121 LLARGADLTTEADSGYTPMDLAV 143
Score = 151 bits (385), Expect = 4e-43
Identities = 38/136 (27%), Positives = 65/136 (47%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL+WA G +E V LL+ GA+ + + L +A+ G +T++V LLLE +
Sbjct: 35 RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+N D +G T L A + + + LL GA + + SG + + AV G+R + + +
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Query: 515 LKKYVDVDIPGKERKT 530
+ +
Sbjct: 155 ENHILKLFQSNLVPAD 170
Score = 129 bits (326), Expect = 7e-35
Identities = 38/238 (15%), Positives = 63/238 (26%), Gaps = 76/238 (31%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
+ G ++ L+K G + +N D
Sbjct: 6 IHQLAAQGELDQLKEHLRK-------GD-----NLVNKPDERGF---------------- 37
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
T + A G + ++ LL D I
Sbjct: 38 ----TPLIWASAFGEIETVRFLLEWGADPHIL---------------------------- 65
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
+AL A+ G V L+ R D+N D + +PL YA
Sbjct: 66 ----------------AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
Query: 198 AREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
R + LL GADL G++P+ A G+ ++ + +
Sbjct: 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167
Score = 122 bits (309), Expect = 1e-32
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 222 GGWSPLMWASYKGHTDTVALLLDKNAD-VNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
G + + +G D + L K + VN + LIWA+ G E V L++ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 281 KVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
++ K + L A G+ +IV +LL+ ++++ PL +
Sbjct: 61 DPHILAK-ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Score = 101 bits (254), Expect = 4e-25
Identities = 46/222 (20%), Positives = 71/222 (31%), Gaps = 77/222 (34%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
++ +K D G + LI A G V LL+ D I
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-------------------- 66
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
KER++A+ A G I+ LLL + D+ I
Sbjct: 67 -------------KERESALSLASTGGYTDIVGLLLERDVDINI---------------- 97
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
D NGGT L++A + + V L+ RGAD+
Sbjct: 98 ----------------------------YDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSP 226
E + ++P+ A GY V + +H L ++ P
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 53.6 bits (130), Expect = 2e-08
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTP 432
G TP+ A G+ ++ ++ + + L P
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 197 bits (503), Expect = 4e-59
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 1/223 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+PL A GHV+I +L++AGAN+D TPL+ A N E V+ L++
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAVKGGHRGIVEA 513
V+ D +G T L +A K G+YE+ LL++G +N QD G + +I A + H +V+
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
LL K D++I E ++ A G V I ++LL A DL GD+PL A +
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 574 LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
+ + + + + + +T +K G+T L A +
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232
Score = 186 bits (475), Expect = 5e-55
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 2/182 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
N + L AA+ G + LV GA+++ D +PL AA + + L+
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYT 269
GA ++ +D G + L A+ KGH + V LL DVN + + +IWA +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYS 329
++V LL+ KG+ +N+ D L WA G V+I +ILL A ++ + PL+
Sbjct: 125 DLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 330 SA 331
+A
Sbjct: 184 AA 185
Score = 184 bits (471), Expect = 2e-54
Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 17/247 (6%)
Query: 72 NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYI 131
N + +++ ++ A E G+V I +L+ A +++ ++ D L
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-----DQRTPL-------ME 50
Query: 132 A--EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA-DVNAEDN 188
A ++L++++ ++ V D +D G T L AA+KG V+ L++ G DVN +D+
Sbjct: 51 AAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
W+P+ +A + D+ LL G+D+ RD L WA++ G D +LL D
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
++A + S L AA + V L + + + V + +K G TPL A V
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK-EGETPLQCASLNSQVWSALQ 228
Query: 309 LLKAGAN 315
+ KA +
Sbjct: 229 MSKALQD 235
Score = 184 bits (469), Expect = 3e-54
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
D ++ T LM AA+ L V+ L+ GA V+ +D + + L AA++G+ +V LL
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 211 DHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
+G D+ +D GGW+P++WA+ H D V LLL K +D+N N L WAA G
Sbjct: 98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
+I +L+ ++ + +G +PL A R+ + V + L ++V +
Sbjct: 158 DIAEILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206
Score = 167 bits (425), Expect = 7e-48
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK-P 453
TPL+ A H+E V L+KAGA VD T L +A EVV+ LL
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+VN D G T + A + + ++ LLL+ G+ INI+D + L A G I E
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
LL D+ + ++ A + + L L+ + D+ + K+G+TPL A
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Query: 574 LEAIQMLIDKKA 585
+ + +
Sbjct: 223 VWSALQMSKALQ 234
Score = 163 bits (415), Expect = 2e-46
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 4/215 (1%)
Query: 420 ANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAV 479
N + +PL A ++ +L++ N++ +D T L A ++ + E
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 480 LLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK-YVDVDIPGKERKTAVYTAVEK 538
L+ +GA ++ +D G + L A K GH +V+ LL +DV+ T + A E
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 539 GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598
+V ++KLLL+ D+ I + + L A + ++ ++L+ K + AV+ GD+ L
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 599 HIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
HIA R V +F+ + + NK GETP
Sbjct: 182 HIAARENRYDCVVLFL---SRDSDVTLKNKEGETP 213
Score = 155 bits (395), Expect = 1e-43
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 181 ADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
+ E + SPL AA G+ D+C L+ GA+++ +PLM A+ H + V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 241 LLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAK-VNVGDKVYGTTPLVWACR 299
L+ A V+ + L AA +G+ E+V L+ G VN D G TP++WA
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE 120
Query: 300 KGHVEIVDILLKAGANVD 317
HV++V +LL G++++
Sbjct: 121 YKHVDLVKLLLSKGSDIN 138
Score = 149 bits (378), Expect = 2e-41
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
G+T L A +KGH E+V LL G +V+ WTP++ AT ++V+LLL
Sbjct: 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
++N D + L A G +IA +LL + ++ + GDS L A + V
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL 195
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPD 553
L + DV + KE +T + A V + A D
Sbjct: 196 FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 144 bits (366), Expect = 1e-39
Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 76/272 (27%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ L+ A + H V+ L+K VD
Sbjct: 39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-------------------------- 72
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
K+ T ++ A +KG+ +++ LL
Sbjct: 73 --KDAE-----GSTCLHLAAKKGHYEVVQYLL---------------------------- 97
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
S D + +DD G T +++A + + V+ L+++G+D+N DN
Sbjct: 98 SNGQMD---------------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN 142
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ L +AA G D+ LL DL ++ G SPL A+ + D V L L +++D
Sbjct: 143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
V + L A+ + K
Sbjct: 203 VTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 83.2 bits (207), Expect = 4e-18
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEI 305
+ + S L AA G+ +I +LV+ GA ++ + TPL+ A H+E
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEA 59
Query: 306 VDILLKAGANVDVAGLWAYMPLYSSA 331
V L+KAGA VD L+ +A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAA 85
Score = 78.2 bits (194), Expect = 2e-16
Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 77/207 (37%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D G + +I A + H +V+ LL K D++I
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-------------------------- 139
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
++ + ++ A G V I ++LL A DL
Sbjct: 140 --RDNEE-----NICLHWAAFSGCVDIAEILLAAKCDLHA-------------------- 172
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
+ +G + L AA++ + V ++R +DV ++
Sbjct: 173 ------------------------VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGAD 215
+ +PL A+ ++ D
Sbjct: 209 EGETPLQCASLNSQVWSALQMSKALQD 235
Score = 57.0 bits (139), Expect = 3e-09
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIV 610
+ + ++ ++ +PL A + +++ ML+ A I + T L A V
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 611 EVFIR-----NPKNN 620
+ I+ +PK+
Sbjct: 61 KYLIKAGALVDPKDA 75
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 196 bits (502), Expect = 8e-59
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 3/229 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
Y T +V A + G E L++AG +V T L A + N ++V+ +
Sbjct: 8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67
Query: 455 VNALDKD-GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
V+ L D T L A + G+ + V L+ GA ++ D G S + A + GH IV
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY 127
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGN-VPILKLLLTANPDLEIATK-DGDTPLLKAVKT 571
L+ K DVD+ + T + A + + V +LLLT N + + K +T L AV
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187
Query: 572 RNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNN 620
N I +L++ A + A + +G++ L +A + ++ ++ +
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236
Score = 196 bits (501), Expect = 1e-58
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
DD ++ A Q G RELV G DV D +N + L +AA D+ +
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62
Query: 211 DHGADLEHRDM-GGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
GA ++ +PL WA+ +GH V L+ AD + S + AA G+T
Sbjct: 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGH-VEIVDILLKAGANVDVA 319
IVA L+ KG V++ D+ G TPL+WA + H V+ +LL +V++
Sbjct: 123 SIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Score = 192 bits (491), Expect = 2e-57
Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 83/313 (26%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
D +++ A + G L++ DV P K
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK----------------------- 40
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVSLCYRT 126
E T ++ A + ++K ++ A D
Sbjct: 41 ----------ENVTLLHWAAINNRIDLVKYYISKGAIVD--------------------- 69
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
D T L +A ++G LS V +L+ GAD +
Sbjct: 70 -----QLGG-------------------DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 187 DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHT-DTVALLLDK 245
D + S + AA+ G+T + A L+ G D++ D G +PLMWA+Y+ H+ D LLL
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 246 NADVNAHGNYH-ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
N VN YH ++L WA G T +++LL++ GA V+ + G + L A ++ +V
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI-KGESALDLAKQRKNVW 224
Query: 305 IVDILLKAGANVD 317
+++ L +A
Sbjct: 225 MINHLQEARQAKG 237
Score = 173 bits (442), Expect = 3e-50
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 3/198 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYC-WTPLLVATLGNFTEVVELLLEYKP 453
T L WA +++V + GA VD G TPL AT +V L++Y
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG-IVE 512
+ + +D +GC+ + +A + G+ I L+ G +++ D++G + L+ A H
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 513 ALLKKYVDVDIPGK-ERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKT 571
LL V V++ K + TA++ AV GN ++ LLL A +++ G++ L A +
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 572 RNLEAIQMLIDKKAKITA 589
+N+ I L + +
Sbjct: 221 KNVWMINHLQEARQAKGY 238
Score = 164 bits (417), Expect = 9e-47
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Query: 183 VNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
+ D+ + + A + G + C EL++ G D+ D + L WA+ D V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 243 LDKNADVNAHGNYH-ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKG 301
+ K A V+ G + L WA +G+ +V L+K GA ++ D G + + A + G
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFG 120
Query: 302 HVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
H IV L+ G +VD+ PL +A
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
Score = 154 bits (392), Expect = 3e-43
Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 6/216 (2%)
Query: 421 NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVL 480
++ Y ++ AT E L+E +V DK+ T L A + ++
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 481 LLNSGAYINIQDR-SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKG 539
++ GA ++ + L A + GH +V L+K D + E + ++ A + G
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120
Query: 540 NVPILKLLLTANPDLEIATKDGDTPLLKAV-KTRNLEAIQMLIDKKAKITAVDKR-GDTV 597
+ I+ L+ D+++ ++G TPL+ A +T +++ ++L+ + DK +T
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Query: 598 LHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
LH A+ A + T++ + + + + N GE+
Sbjct: 181 LHWAVLAGNTTVISLLL---EAGANVDAQNIKGESA 213
Score = 118 bits (298), Expect = 3e-30
Identities = 44/249 (17%), Positives = 79/249 (31%), Gaps = 79/249 (31%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
V + L A + GH +V L+K D ++ D
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-------------SLID------- 106
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
E + ++ A + G+ I+ L+ D+++
Sbjct: 107 -------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM---------------- 137
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKG-KLSFVRELVTRGADV 183
D NG T LM+AA + + R L+T V
Sbjct: 138 ----------------------------MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 184 NAEDNDN-WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
N D + + L +A G T V + LL+ GA+++ +++ G S L A + + + L
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Query: 243 LDKNADVNA 251
+
Sbjct: 230 QEARQAKGY 238
Score = 93.3 bits (233), Expect = 1e-21
Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 18/217 (8%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ D+ + L A +V+ + K VD G + L+ S L
Sbjct: 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST-PLHWATRQGHLSMVVQL 95
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
+ + E + ++ A + G+ I+ L+ D+++ + + M L
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-----NGMTPL---- 146
Query: 127 LQSYIAEDNLDSLQT--FLENKRTVADDRDDNGG-TALMFAAQKGKLSFVRELVTRGADV 183
A S+ L + D TAL +A G + + L+ GA+V
Sbjct: 147 ---MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
+A++ S L A + + L + + +
Sbjct: 204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 201 bits (513), Expect = 8e-59
Identities = 80/416 (19%), Positives = 139/416 (33%), Gaps = 87/416 (20%)
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
W P M +KN + SL+ A+ GY + ++
Sbjct: 17 WMPPMENE------------EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQH----- 59
Query: 284 VGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLAT 343
Y P G+ + D + S
Sbjct: 60 -----YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP--------------EPESP----I 96
Query: 344 PLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWA 403
L GS + R+ V+ ++ + T L W
Sbjct: 97 KL---HTEAAGS---------YAITEPITRESVN------------IIDPRHNRTVLHWI 132
Query: 404 CRKGHVEIVDILL--------KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
E + L+ AGA+V+ TPL++A L +V L++ +
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLN---SGAYINIQDRSGDSNLIHAVKGGHRG--- 509
+K +AL A + + + V +LN I DR+G + L+ R
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252
Query: 510 IVEALLKKYVDVDIPG--------KERKTAVYTAVEKGNVPILKLLLTAN-PDLEIATKD 560
+ L++K VD G + +TA++ A + N+PI+K L+ + + +D
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED 312
Query: 561 GDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
G TP++ A + +E + LI + A + AVD T +A IV++F R
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368
Score = 198 bits (505), Expect = 1e-57
Identities = 62/370 (16%), Positives = 116/370 (31%), Gaps = 50/370 (13%)
Query: 144 ENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYT 203
E K + +L+ A+ G + N + + P G
Sbjct: 24 EEKNRKNHQSITSSQHSLLEASYDGYI---------KRQRNELQHYSLYPNPQGYGNGND 74
Query: 204 DVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWA 263
+ + + L + G + ++ ++ ++ + L W
Sbjct: 75 FLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNRTVLHWI 132
Query: 264 AGRGYTEIVALL--------VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
A E L + GA VN D TPL+ A +V L+KAGA+
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAGAD 191
Query: 316 VDVAGLWAYMPLYSSALAD--------IFSEPGLA----------TPLTVGLYAKWGSGK 357
+ L+ +A + S T L + G+
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL---MIVAHNEGR 248
Query: 358 SFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILL- 416
+ K +G + ++ G T L +A + ++ IV L+
Sbjct: 249 DQV-----ASAKLLVEKGAKVDYDGAA---RKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300
Query: 417 KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYE 476
+ G+N D TP+++A EVV L++ +V A+D TA +A + ++
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360
Query: 477 IAVLLLNSGA 486
I +
Sbjct: 361 IVDIFDRCRP 370
Score = 194 bits (494), Expect = 4e-56
Identities = 59/392 (15%), Positives = 113/392 (28%), Gaps = 59/392 (15%)
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
+ L+ ASY G+ L + G G
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP---------NPQGYGNGNDF 75
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSS 330
+ + L G I + + +
Sbjct: 76 LGDFNHTNLQIPTEPEP-ESPIKLHTEA-AGSYAITEPITRES----------------- 116
Query: 331 ALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLV 390
+I T L + S + E K G D
Sbjct: 117 --VNIIDPRHNRTVL---HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC------- 164
Query: 391 MHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLE 450
TPL+ A +V L+KAGA+ + + L A ++ +L
Sbjct: 165 ----DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLN 220
Query: 451 YKP---NVNALDKDGCTALTIACKDGYYE---IAVLLLNSGAYINI--------QDRSGD 496
++ LD++G TAL I + + A LL+ GA ++ + G
Sbjct: 221 STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR 280
Query: 497 SNLIHAVKGGHRGIVEALLKKY-VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
+ L +A + + IV+ L+ + + D ++ KT + A ++G + ++ L+ +E
Sbjct: 281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340
Query: 556 IATKDGDTPLLKAVKTRNLEAIQMLIDKKAKI 587
T A + + + + +
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 172 bits (439), Expect = 2e-48
Identities = 51/274 (18%), Positives = 87/274 (31%), Gaps = 37/274 (13%)
Query: 67 NLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
+ + +++ GN + T
Sbjct: 48 GYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPE-----------SPI 96
Query: 127 LQSYIAEDNLDSLQTFLENKRTVAD-DRDDNGGTALMFAAQKGKL--------SFVRELV 177
A + + + + T L + A +E +
Sbjct: 97 KLHTEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 153
Query: 178 TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
GADVNA D D +PL A + A L+ GAD + S L A+
Sbjct: 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 213
Query: 238 TVALLLDKN---ADVNAHGNYHISSLIWAAGRGYTEIVA---LLVKKGAKVNVGDKV--- 288
+ +L+ D+ +++L+ A + VA LLV+KGAKV+
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273
Query: 289 ----YGTTPLVWACRKGHVEIVDILL-KAGANVD 317
G T L +A + ++ IV L+ + G+N D
Sbjct: 274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 307
Score = 168 bits (428), Expect = 1e-46
Identities = 50/339 (14%), Positives = 103/339 (30%), Gaps = 39/339 (11%)
Query: 3 QDDVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQR 62
++ G+ + + P + L+ +A
Sbjct: 50 IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPI--KLHT-EAAGSY 106
Query: 63 STTRNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEI---ATKTLPRSD 117
+ T + + N + +T ++ + + L+ I A D
Sbjct: 107 AITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165
Query: 118 SMVSLCYRTLQSYIA--EDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFV 173
L +A + ++ AD + + +AL AA +
Sbjct: 166 ENTPL-------MLAVLARRRRLVAYLMKAG---ADPTIYNKSERSALHQAAANRDFGMM 215
Query: 174 RELV---TRGADVNAEDNDNWSPLTYAAREGYTDVCAE---LLDHGADL--------EHR 219
++ D+ D + + L A D A L++ GA + +
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 220 DMGGWSPLMWASYKGHTDTVALLLDKN-ADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
G + L +A+ + V L+ + ++ + + ++ AA G E+V L+++
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
GA V D T A H IVDI + +
Sbjct: 336 GASVEAVDA-TDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 163 bits (414), Expect = 7e-45
Identities = 49/261 (18%), Positives = 96/261 (36%), Gaps = 26/261 (9%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
Y P G+ + D L G+ + E + N
Sbjct: 60 YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS-YAITEPITRESVN 118
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNS--------GAYINIQDRSGDSNLIHAVKGG 506
+ + T L + E + L+ GA +N D ++ L+ AV
Sbjct: 119 IID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR 177
Query: 507 HRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP---DLEIATKDGDT 563
R +V L+K D I K ++A++ A + ++ +L + D+E ++G T
Sbjct: 178 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237
Query: 564 PLLKAVKTRNLEAI---QMLIDKKAKI--------TAVDKRGDTVLHIAMRARSKTIVEV 612
L+ + + ++L++K AK+ + +G T LH A + + IV+
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297
Query: 613 FIRNPKNNILLYRPNKAGETP 633
+ +N + ++ G+TP
Sbjct: 298 LVGEKGSNK--DKQDEDGKTP 316
Score = 161 bits (409), Expect = 3e-44
Identities = 47/254 (18%), Positives = 86/254 (33%), Gaps = 30/254 (11%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP- 453
L G I + + + N+ + T L + E E L+ ++
Sbjct: 93 ESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 150
Query: 454 -------NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGG 506
+VNA+D D T L +A + L+ +GA I ++S S L A
Sbjct: 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 210
Query: 507 HRGIVEALLKKY---VDVDIPGKERKTAVYTAVEKGN---VPILKLLL--------TANP 552
G++ +L D++ + TA+ V KLL+
Sbjct: 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270
Query: 553 DLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK-AKITAVDKRGDTVLHIAMRARSKTIVE 611
+ G T L A + N+ ++ L+ +K + D+ G T + +A + +V
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330
Query: 612 VFI-----RNPKNN 620
I +
Sbjct: 331 YLIQQGASVEAVDA 344
Score = 157 bits (400), Expect = 6e-43
Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 17/210 (8%)
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
+ D L F + + + L A G + + ++
Sbjct: 62 LYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII 120
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDH--------GADLEHRDMGGWSPLMWASYKGHT 236
+ N + L + A + +L+ H GAD+ D +PLM A
Sbjct: 121 -DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179
Query: 237 DTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK---GAKVNVGDKVYGTTP 293
VA L+ AD + S+L AA ++ ++ + D+ G T
Sbjct: 180 RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTA 238
Query: 294 LVWACRKGH---VEIVDILLKAGANVDVAG 320
L+ V +L++ GA VD G
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Score = 142 bits (360), Expect = 2e-37
Identities = 35/261 (13%), Positives = 70/261 (26%), Gaps = 30/261 (11%)
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
++ L+ A G+++ L+ + P + +
Sbjct: 33 SITSSQHSLLEASYDGYIKRQRNELQHYS---------LYPNPQGYGNGNDFLGDFNHTN 83
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
+ + L G Y I + I R + L
Sbjct: 84 LQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKS 141
Query: 512 EALLKKYV--------DVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDT 563
E L+ DV+ + T + AV ++ L+ A D I K +
Sbjct: 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201
Query: 564 PLLKAVKTRNLEAIQMLIDKK---AKITAVDKRGDTVLHIAMRARSK---TIVEVFIR-- 615
L +A R+ + +++ I +D+ G T L I + ++ +
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261
Query: 616 ---NPKNNILLYRPNKAGETP 633
+ G T
Sbjct: 262 AKVDYDGAARKDSEKYKGRTA 282
Score = 127 bits (322), Expect = 2e-32
Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 15/176 (8%)
Query: 395 YGTTPLVWACRKGHVEIVDILL---KAGANVDVAGLYCWTPLLVATLGNFTE---VVELL 448
+ L A ++ +L K +++ T L++ + +LL
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257
Query: 449 LEYKPNVN--------ALDKDGCTALTIACKDGYYEIA-VLLLNSGAYINIQDRSGDSNL 499
+E V+ + G TAL A + I L+ G+ + QD G + +
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317
Query: 500 IHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLE 555
+ A + G +V L+++ V+ TA A + I+ + P+ E
Sbjct: 318 MLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 35.3 bits (82), Expect = 0.049
Identities = 7/94 (7%), Positives = 19/94 (20%), Gaps = 12/94 (12%)
Query: 551 NPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIV 610
N + LL+A ++ + + + +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLG 77
Query: 611 EVFIRNPKNNILLYRPNKAGETPYSIDMNNQKSI 644
+ N + P + +I
Sbjct: 78 DFNHTNLQI---PTEPEPESPIKLHTEAAGSYAI 108
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 197 bits (504), Expect = 8e-59
Identities = 65/289 (22%), Positives = 105/289 (36%), Gaps = 45/289 (15%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
+ AA G+ + L+ +G VN+ +PL AC GH+ V ILLK GA V+
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
+ PL+ A GS + + + G
Sbjct: 66 TADWHTPLF------------NA--------CVSGS---------WDCVNLLLQHGASVQ 96
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
S +P+ A R+GHVE V+ L+ G N+D + TPL +A
Sbjct: 97 PE------------SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144
Query: 440 NFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNL 499
V+ LLE +VN K + L + E+A LL++ GA ++ G +
Sbjct: 145 QQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
Query: 500 IHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
+ + L++ + R + + I KL+L
Sbjct: 204 ELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 197 bits (503), Expect = 8e-59
Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 15/242 (6%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
+P+ A GH + L+ G V++ +PL A LG V++LL++ V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N + D T L AC G ++ LLL GA + + S + A + GH V +L+
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLI 121
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKDGDTPLLKAVKTRN 573
++D T +Y A E +K LL A+ + K D+PL +T +
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLHAVARTAS 178
Query: 574 LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN--PKNNILLYRPNKAGE 631
E +L+D A A + G + + + ++F+ P +
Sbjct: 179 EELACLLMDFGADTQAKNAEGKRPVELV--PPESPLAQLFLEREGPPS-----LMQLCRL 231
Query: 632 TP 633
Sbjct: 232 RI 233
Score = 193 bits (492), Expect = 4e-57
Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 4/230 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+PL AC GH+ V ILLK GA V+ TPL A + + V LLL++ +
Sbjct: 35 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
V + D + + A + G+ E L+ G I+ + + L A + R V+ L
Sbjct: 95 VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
L+ DV+ GK + + ++ + + LL+ D + +G P+
Sbjct: 154 LESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV--PPES 210
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
Q+ ++++ + + + + I ++ + LL+
Sbjct: 211 PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLLH 260
Score = 186 bits (474), Expect = 2e-54
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+ + + AA G +R L+++G VN D+ SPL A G+ LL HGA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ +PL A G D V LLL A V + S + AA RG+ E V L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 120
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ G ++ + TPL AC V LL++GA+V+
Sbjct: 121 IAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 184 bits (470), Expect = 6e-54
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 20/253 (7%)
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA--EDNLDS 138
+ ++ A G+ L+ L++ + I T D + L + A +L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITA-----DHVSPL-------HEACLGGHLSC 51
Query: 139 LQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAA 198
++ L++ V + + T L A G V L+ GA V ++D SP+ AA
Sbjct: 52 VKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAA 109
Query: 199 REGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHIS 258
R G+ + L+ +G +++H+ +PL A V LL+ ADVN G S
Sbjct: 110 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDS 168
Query: 259 SLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
L A E+ LL+ GA + G P+ + + + L+ +
Sbjct: 169 PLHAVARTASEELACLLMDFGADTQAKNA-EGKRPVELVPPESP--LAQLFLEREGPPSL 225
Query: 319 AGLWAYMPLYSSA 331
L
Sbjct: 226 MQLCRLRIRKCFG 238
Score = 173 bits (441), Expect = 7e-50
Identities = 45/307 (14%), Positives = 84/307 (27%), Gaps = 82/307 (26%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
S L A GGH V+ LLK V+
Sbjct: 31 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-------------------------- 64
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
T ++ A G+ + LLL +
Sbjct: 65 --VTADW-----HTPLFNACVSGSWDCVNLLLQHGASV---------------------- 95
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
+ + + + AA++G + V L+ G +++ + +
Sbjct: 96 -----------------------QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS 132
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+PL A +LL+ GAD+ + G SPL + + LL+D AD
Sbjct: 133 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGAD 191
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
A + + L +++ ++ + H +I +
Sbjct: 192 TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQL-CRLRIRKCFGIQQHHKITKL 248
Query: 309 LLKAGAN 315
+L
Sbjct: 249 VLPEDLK 255
Score = 124 bits (314), Expect = 4e-32
Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
+ + A G+ L++ G +NI S L A GGH V+ LLK
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578
V+ + T ++ A G+ + LLL A+ D +P+ +A + ++E +
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVN 118
Query: 579 MLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
LI I T L++A + + V+ + +
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156
Score = 44.3 bits (106), Expect = 6e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
+P+ A GH + L+ G V++ PL+ + L
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 45
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 195 bits (499), Expect = 8e-58
Identities = 51/321 (15%), Positives = 98/321 (30%), Gaps = 52/321 (16%)
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
+ L D D+ G S +A + V LL+ A N N
Sbjct: 6 RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE- 63
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANV 316
L AA T+IV +L+ G + D G T L +A G+++ V + +K +
Sbjct: 64 -FPLHQAATLEDTKIVKILLFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 317 DVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGV 376
G + G T + +F +
Sbjct: 122 MFYG-----------------KTGWKTSFYHA--VMLND---------VSIVSYFLSEIP 153
Query: 377 DPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLL-V 435
L+ + + + GHV+++ +LL + + + P + +
Sbjct: 154 S------------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL 201
Query: 436 ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
A E+++ L +Y N+ +A EIA +++ +
Sbjct: 202 AIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK 254
Query: 496 DSNLIHAVKGGHRGIVEALLK 516
D +++ K L+
Sbjct: 255 DLDIVKNNKLDEIISKNKELR 275
Score = 172 bits (438), Expect = 4e-49
Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 2/169 (1%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
L AA V+ L+ G D + D+ + L YA G +
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120
Query: 216 LEHRDMGGWS-PLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
L GW A V+ L + S + G+ +++ L
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL-SCIHITIKNGHVDMMIL 179
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWA 323
L+ N + + + A +E++ L K N+ A L
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLEN 228
Score = 169 bits (430), Expect = 4e-48
Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 10/229 (4%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
PL A +IV ILL +G + T L A + V+L ++ +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 456 NALDKDG-CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
K G T+ A I L+ S + +K GH ++ L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILL 180
Query: 515 LKKYVDVDIPGKERKTAV-YTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
L + A++ ++ +L+ L + + + L+ V +
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-------NIYSANLENVLLDD 233
Query: 574 LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNIL 622
E +M+I+K + + D + + +R N +
Sbjct: 234 AEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282
Score = 169 bits (430), Expect = 5e-48
Identities = 44/321 (13%), Positives = 81/321 (25%), Gaps = 90/321 (28%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
K D G S +A+ + +V LL ++
Sbjct: 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-------------------------- 59
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
E + ++ A + I+K+LL + D
Sbjct: 60 ---------LENEFPLHQAATLEDTKIVKILLFSGLDDSQ-------------------- 90
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
DD G TAL +A G + V+ V + +
Sbjct: 91 ------------------------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126
Query: 189 DNWS-PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
W +A + + L S + GH D + LLLD
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMT 185
Query: 248 DVNAHGNY-HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIV 306
N + + I + A E++ L K + + + EI
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLDDAEIA 237
Query: 307 DILLKAGANVDVAGLWAYMPL 327
++++ + +
Sbjct: 238 KMIIEKHVEYKSDSYTKDLDI 258
Score = 158 bits (401), Expect = 5e-44
Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 8/223 (3%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G + + + + A ++ + A N +V LL
Sbjct: 1 GMDLS--RINTWKSKQL-KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N + L A +I +LL SG + D G++ L +AV G+ V+ +
Sbjct: 58 NL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115
Query: 516 KKYVDVDIPGKE-RKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
KK + GK KT+ Y AV +V I+ L+ P + + +K ++
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHV 174
Query: 575 EAIQMLIDKKAKITAVDKRGDT-VLHIAMRARSKTIVEVFIRN 616
+ + +L+D + + +A+ + +++ +
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217
Score = 156 bits (396), Expect = 3e-43
Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 4/160 (2%)
Query: 158 GTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLE 217
G L K ++ + D D S YA + + LL+ GA
Sbjct: 1 GMDLSRIN-TWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN 58
Query: 218 HRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+ PL A+ T V +LL D + + ++L +A G + V L VK
Sbjct: 59 LLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
K ++ K T A V IV L +
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 187 bits (478), Expect = 2e-55
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%)
Query: 395 YGTTPLVWACRKGHVEIVDILL----KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLE 450
G TPL A +G++ V L+ + G +D+ TPL +A + VV LL+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 451 YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY----INIQDRSGDSNLIHAVKGG 506
+ ALD+ G TA +AC+ LL+S A + ++ G + L AV
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 507 HRGIVEALLKKYVDVDIP-GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
+ V+ LL++ D+D K ++ + AVE ++ +++LLL ++ G + L
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 566 LKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A L ++ L+ A + + DT L +A R I+
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 176 bits (450), Expect = 2e-51
Identities = 66/314 (21%), Positives = 112/314 (35%), Gaps = 83/314 (26%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVD--VDIPGKVRKLSDALNVTDANDQRSTTR 66
+ D GD+ L AV G+ V L+ + ++ ++ +
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----------DIYN--------- 43
Query: 67 NLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
R+T ++ AV +++LL+TA
Sbjct: 44 -----------NLRQTPLHLAVITTLPSVVRLLVTAGASPMA------------------ 74
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA----D 182
D +G TA A + + +R L+ A D
Sbjct: 75 --------------------------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 183 VNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDM-GGWSPLMWASYKGHTDTVAL 241
+ A + D + L A + LL+ GAD++ D+ G SPL+ A V L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKG 301
LL A+VNA S+L A+GRG +V LV+ GA ++ + + TPL+ A +
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC-HNDTPLMVARSRR 227
Query: 302 HVEIVDILLKAGAN 315
++I+ A+
Sbjct: 228 VIDILRGKATRPAS 241
Score = 176 bits (450), Expect = 2e-51
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 8/190 (4%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELV----TRGADVNAEDNDNWSPLTYAAREGYTDV 205
A D++G T L A +G L V LV G +++ +N +PL A V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 206 CAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA----DVNAHGNYHISSLI 261
L+ GA D G + A + LLD A D+ A +++L
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 262 WAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL 321
A E V LL+++GA ++ D G +PL+ A + +V +LL+ GANV+
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 322 WAYMPLYSSA 331
L+S++
Sbjct: 182 SGSSALHSAS 191
Score = 176 bits (449), Expect = 3e-51
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
D ++ T L A S VR LVT GA A D + A LL
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 211 DHGA----DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA-HGNYHISSLIWAAG 265
D A DLE R+ G + L A +TV LLL++ AD++A S LI A
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159
Query: 266 RGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+V LL++ GA VN G++ L A +G + +V L+++GA+
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSS 210
Score = 165 bits (420), Expect = 4e-47
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 5/196 (2%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY--- 451
TPL A +V +L+ AGA+ + T +A + LL+
Sbjct: 45 LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104
Query: 452 -KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDR-SGDSNLIHAVKGGHRG 509
++ A + DG TAL +A E LLL GA I+ D SG S LIHAV+
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 510 IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAV 569
+V+ LL+ +V+ +A+++A +G +P+++ L+ + D + DTPL+ A
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224
Query: 570 KTRNLEAIQMLIDKKA 585
R ++ ++ + A
Sbjct: 225 SRRVIDILRGKATRPA 240
Score = 141 bits (359), Expect = 1e-38
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGA----NVDVAGLYCWTPLLVATLGNFTEVVELLLE 450
+G T AC + LL + A +++ T L VA E V+LLLE
Sbjct: 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137
Query: 451 YKPNVNALD-KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG 509
+++A+D K G + L A ++ + LLL GA +N Q SG S L A G
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197
Query: 510 IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT--AN 551
+V L++ D + T + A + + IL+ T A+
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 124 bits (315), Expect = 2e-32
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLN----SGAYINIQDRSGDSNLIHAVKGGHRGI 510
D+DG T L IA G L+N G ++I + + L AV +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 511 VEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL----TANPDLEIATKDGDTPLL 566
V L+ + +TA + A E + L+ LL DLE DG T L
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 567 KAVKTRNLEAIQMLIDKKAKITAVD-KRGDTVLHIAMRARSKTIVEVFI 614
AV T E +Q+L+++ A I AVD K G + L A+ S ++V++ +
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Score = 31.3 bits (72), Expect = 0.72
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 36/101 (35%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
+V+++ SG S L A G +V L++ D +
Sbjct: 175 NVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADSSL---------------------- 211
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT--AN 103
KN H T + A + + IL+ T A+
Sbjct: 212 ------KNCHN-----DTPLMVARSRRVIDILRGKATRPAS 241
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 184 bits (470), Expect = 4e-55
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGA-DVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+ ++G VR + D+N D+ +SPL +A REG + V L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
GA + + G +PL A+ GH D V LL AD+NA + L +A G ++
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
LV GA V++ +K YG P+ A + + K G N++
Sbjct: 122 EDLVANGALVSICNK-YGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 150 bits (381), Expect = 2e-42
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 187 DNDNWSPLTYAAREGYTDVCAELLDHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+ + REG LD+ DL D G+SPL WA +G + V +L+ +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEI 305
A +N + L AA G+ +IV L++ A +N ++ +G PL +AC G ++
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQV 120
Query: 306 VDILLKAGANVDVAGLWAYMPLYSSA 331
+ L+ GA V + + MP+ +
Sbjct: 121 AEDLVANGALVSICNKYGEMPVDKAK 146
Score = 150 bits (381), Expect = 2e-42
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
E N +++ +L+N + DD+G + L +A ++G+ + V L+ RGA +N + + +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74
Query: 193 PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
PL AA G+ D+ +LL + AD+ + G PL +A + G L+ A V+
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
Query: 253 GNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGH 302
Y + A + K G +N P KG
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNLN-------RIPYKDTFWKGT 177
Score = 142 bits (361), Expect = 1e-39
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 6/174 (3%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGAN-VDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+ CR+G+ V + L N ++ + ++PL A + VVE+L+
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+N +++ T L +A G+ +I LL A IN + G+ L +A G + E L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT--ANP---DLEIATKDGDT 563
+ V I K + V A + + N + G T
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178
Score = 137 bits (347), Expect = 1e-37
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G +PL WACR+G +V++L+ GA ++V TPL +A ++V+ LL+YK +
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+NA+++ G L AC G ++A L+ +GA ++I ++ G+ + A + E
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGN 540
K +++ + KG
Sbjct: 158 EKMGQNLN------RIPYKDTFWKGT 177
Score = 88.3 bits (220), Expect = 2e-20
Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 61/231 (26%)
Query: 14 GDSN----LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLL 69
G + + G+ V L ++ N
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDN--------------TENDL-----------NQG 35
Query: 70 DKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQS 129
D + + ++ A +G ++++L+ + + + L
Sbjct: 36 DDHG-------FSPLHWACREGRSAVVEMLIMRGARINVMNR-----GDDTPL------- 76
Query: 130 YIA--EDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
++A + D +Q L+ K AD +++G L +A G+ +LV GA V+
Sbjct: 77 HLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHT 236
+ P+ A + G +L P +KG T
Sbjct: 134 CNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI------PYKDTFWKGTT 178
Score = 50.1 bits (121), Expect = 2e-07
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 557 ATKDGDTPLLKAVKTRNLEAIQMLIDKKA-KITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+ + + + N A+++ +D + D G + LH A R +VE+ I
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59
Score = 44.3 bits (106), Expect = 2e-05
Identities = 25/199 (12%), Positives = 46/199 (23%), Gaps = 84/199 (42%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
++ +R D+ L A GHR IV+ LL+ D++
Sbjct: 64 RINVM-NRGDDTPLHLAASHGHRDIVQKLLQYKADINA---------------------- 100
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
N+H ++ A G + + L+ + I
Sbjct: 101 ------VNEH-----GNVPLHYACFWGQDQVAEDLVANGALVSI---------------- 133
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
+ G + A + G ++N
Sbjct: 134 ----------------------------CNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Query: 185 AEDNDNWSPLTYAAREGYT 203
P +G T
Sbjct: 166 R------IPYKDTFWKGTT 178
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 180 bits (460), Expect = 1e-52
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
T S ED + F+ ++ + D G TAL AA+ + + L+ AD N
Sbjct: 26 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
+DN +PL A V L+ + A DL+ R G +PL+ A+ + L++
Sbjct: 86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145
Query: 245 KNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
+ADVNA + S+L WAA + +L+K GA ++ + TPL A R+G E
Sbjct: 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYE 204
Query: 305 IVDILLKAGANVD 317
+LL AN D
Sbjct: 205 TAKVLLDHFANRD 217
Score = 174 bits (444), Expect = 2e-50
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 15/235 (6%)
Query: 395 YGTTPLVWACRKG-------------HVEIVDILLKAGANV-DVAGLYCWTPLLVATLGN 440
G TPL+ A G ++ + GA++ + T L +A +
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 441 FTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNL 499
++ + LLE + N D G T L A + +L+ + A ++ + G + L
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 500 IHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATK 559
I A + G++E L+ + DV+ K+A++ A NV +LL + ++
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188
Query: 560 DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+TPL A + + E ++L+D A D IA IV +
Sbjct: 189 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 168 bits (427), Expect = 6e-48
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK-P 453
G T L A R + LL+A A+ ++ TPL A + V ++L+ +
Sbjct: 56 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+++A DG T L +A + + L+NS A +N D G S L A +
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
LLK + D+ +T ++ A +G+ K+LL + +I P A + +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 574 LEAIQMLIDKKAKI 587
+ +++L +
Sbjct: 236 HDIVRLLDLEHHHH 249
Score = 167 bits (426), Expect = 8e-48
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGA-DVNAEDNDNWSPLTYAAREGYTDVCAEL 209
+ +D+ G T L A + L+ A D++A +D +PL AAR + +L
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
++ AD+ D G S L WA+ + D +LL A+ + N + L AA G
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
E +L+ A ++ D P A + H +IV +L +
Sbjct: 204 ETAKVLLDHFANRDITDH-MDRLPRDIAQERMHHDIVRLLDLEHHH 248
Score = 160 bits (407), Expect = 3e-45
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 151 DDRDDNGGTALMFAAQKGK-------------LSFVRELVTRGADV-NAEDNDNWSPLTY 196
+ R +G T LM A+ G + + + + +GA + N D + L
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA-DVNAHGNY 255
AAR +D LL+ AD +D G +PL A +L+ A D++A +
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Query: 256 HISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+ LI AA ++ L+ A VN D G + L WA +V+ +LLK GAN
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 316 VD 317
D
Sbjct: 183 KD 184
Score = 152 bits (386), Expect = 3e-42
Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 44/271 (16%)
Query: 14 GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNK 73
G + ++ + + + N TD
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLH------------NQTD---------------- 54
Query: 74 HKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT-LQSYIA 132
+ +TA++ A K LL A+ D I RT L + ++
Sbjct: 55 ----RTGETALHLAARYSRSDAAKRLLEASADANIQDNM-----------GRTPLHAAVS 99
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
D Q + N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159
Query: 193 PLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
L +AA D LL +GA+ + ++ +PL A+ +G +T +LLD A+ +
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 253 GNYHISSLIWAAGRGYTEIVALLVKKGAKVN 283
+ A R + +IV LL + +
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 135 bits (342), Expect = 4e-36
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 16/151 (10%)
Query: 182 DVNAEDNDNWSPLTYAAREG-------------YTDVCAELLDHGADLE-HRDMGGWSPL 227
DVN D ++PL A+ G V ++ + GA L D G + L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 228 MWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAK-VNVGD 286
A+ +D LL+ +AD N N + L A + +L++ A ++
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 287 KVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
GTTPL+ A R +++ L+ + A+V+
Sbjct: 122 H-DGTTPLILAARLAVEGMLEDLINSHADVN 151
Score = 121 bits (307), Expect = 2e-31
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 28/200 (14%)
Query: 454 NVNALDKDGCTALTIACKDGYY-------------EIAVLLLNSGAYI-NIQDRSGDSNL 499
+VN DG T L IA G + + GA + N DR+G++ L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 500 IHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA-NPDLEIAT 558
A + + LL+ D +I +T ++ AV + ++L+ DL+
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI---- 614
DG TPL+ A + ++ LI+ A + AVD G + LH A + V +
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 615 -RNPKNNILLYRPNKAGETP 633
++ +NN ETP
Sbjct: 182 NKDMQNNR--------EETP 193
Score = 104 bits (262), Expect = 3e-25
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G + L WA +V+ +LLK GAN D+ TPL +A E ++LL++ N
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQ 491
+ D IA + +++I LL + +
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 71.3 bits (176), Expect = 5e-14
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 22/121 (18%)
Query: 215 DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
D+ R G++PLM AS G + +++
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLE--------------------TGNSEEEEDAPAVISD 41
Query: 275 LVKKGAKV-NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALA 333
+ +GA + N D+ G T L A R + LL+A A+ ++ PL+++ A
Sbjct: 42 FIYQGASLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100
Query: 334 D 334
D
Sbjct: 101 D 101
Score = 38.6 bits (91), Expect = 0.004
Identities = 22/176 (12%), Positives = 37/176 (21%), Gaps = 77/176 (43%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
D G S L A + LLK + D+
Sbjct: 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-------------------------- 185
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+N +T ++ A +G+ K+LL + +I
Sbjct: 186 --QNNR-----EETPLFLAAREGSYETAKVLLDHFANRDI-------------------- 218
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
D A ++ VR L +
Sbjct: 219 ------------------------TDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 177 bits (452), Expect = 1e-52
Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+ G L+ AA+ G+ VR L+ GADVNAED W+PL AA G+ ++ LL +G
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVA 273
AD+ D G +PL A+ GH + V +LL ADVNA+ + L AA G+ EIV
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 274 LLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
+L+K GA VN DK +G T + G+ ++ +IL K
Sbjct: 131 VLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167
Score = 155 bits (394), Expect = 2e-44
Identities = 60/154 (38%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 179 RGADVNAE-DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
RG+ + +D L AAR G D L+ +GAD+ D GW+PL A++ GH +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWA 297
V +LL ADVNA + ++ L AA G+ EIV +L+K GA VN D G TPL A
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM-EGHTPLHLA 120
Query: 298 CRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
GH+EIV++LLK GA+V+ + S
Sbjct: 121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Score = 144 bits (365), Expect = 3e-40
Identities = 59/161 (36%), Positives = 83/161 (51%)
Query: 388 VLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVEL 447
H S L+ A R G + V IL+ GA+V+ WTPL +A E+VE+
Sbjct: 6 HHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65
Query: 448 LLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH 507
LL+ +VNA+D G T L +A G+ EI +LL +GA +N D G + L A GH
Sbjct: 66 LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125
Query: 508 RGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
IVE LLK DV+ K KTA +++ GN + ++L
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 137 bits (349), Expect = 5e-38
Identities = 46/126 (36%), Positives = 66/126 (52%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
D +G T L AA G L V L+ GADVNA D+ +PL AA G+ ++ LL +
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
GAD+ DM G +PL A+ GH + V +LL ADVNA + ++ + G ++
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 273 ALLVKK 278
+L K
Sbjct: 163 EILQKL 168
Score = 133 bits (337), Expect = 2e-36
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 413 DILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD 472
G+++ LL A + V +L+ +VNA D G T L +A +
Sbjct: 5 HHHHHHGSDL-------GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57
Query: 473 GYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAV 532
G+ EI +LL +GA +N D +G + L A GH IVE LLK DV+ E T +
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
Query: 533 YTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581
+ A G++ I+++LL D+ K G T ++ N + ++L
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 129 bits (327), Expect = 5e-35
Identities = 49/123 (39%), Positives = 71/123 (57%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A GH+EIV++LLK GA+V+ TPL +A L E+VE+LL+ +
Sbjct: 46 SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VNA D +G T L +A G+ EI +LL +GA +N QD+ G + ++ G+ + E L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 515 LKK 517
K
Sbjct: 166 QKL 168
Score = 110 bits (279), Expect = 1e-28
Identities = 49/229 (21%), Positives = 73/229 (31%), Gaps = 77/229 (33%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
L+ A + G V L+ DV N D
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-------------NAED-------------------- 44
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
T ++ A G++ I+++LL D+
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNA----------------------------- 75
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
D G T L AA G L V L+ GADVNA D + +PL A
Sbjct: 76 ---------------VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 198 AREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN 246
A G+ ++ LL +GAD+ +D G + + G+ D +L N
Sbjct: 121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 92.0 bits (230), Expect = 6e-22
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 485 GAYINIQDRS-GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPI 543
G++ + S L+ A + G V L+ DV+ T ++ A G++ I
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 544 LKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMR 603
+++LL D+ G TPL A +LE +++L+ A + A D G T LH+A
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Query: 604 ARSKTIVEVFIRN 616
IVEV ++N
Sbjct: 123 FGHLEIVEVLLKN 135
Score = 70.9 bits (175), Expect = 1e-14
Identities = 44/202 (21%), Positives = 60/202 (29%), Gaps = 78/202 (38%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
D SG + L A GH IVE LLK DV+
Sbjct: 42 AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-------------------------- 75
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+ T + A G++ I+++LL D+
Sbjct: 76 --VDHAG-----MTPLRLAALFGHLEIVEVLLKNGADVNA-------------------- 108
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
D G T L AA G L V L+ GADVNA+D
Sbjct: 109 ------------------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Query: 189 DNWSPLTYAAREGYTDVCAELL 210
+ + G D+ AE+L
Sbjct: 145 FGKTAFDISIDNGNEDL-AEIL 165
Score = 34.3 bits (80), Expect = 0.062
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
D +G + L A GH IVE LLK DV+ L++ L
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT--PLHLAAMFGHLEIVEVL 132
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLL 100
L + + K KTA +++ GN + ++L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 178 bits (454), Expect = 3e-52
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 2/199 (1%)
Query: 134 DNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSP 193
D + F+ ++ + D G TAL AA+ + + L+ AD N +DN +P
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 194 LTYAAREGYTDVCAELLDHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
L A V L+ + A DL+ R G +PL+ A+ + L++ +ADVNA
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 253 GNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
+ S+L WAA + +L+K GA ++ + TPL A R+G E +LL
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDH 180
Query: 313 GANVDVAGLWAYMPLYSSA 331
AN D+ +P +
Sbjct: 181 FANRDITDHMDRLPRDIAQ 199
Score = 171 bits (435), Expect = 2e-49
Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 2/210 (0%)
Query: 407 GHVEIVDILLKAGANV-DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTA 465
++ + GA++ + T L +A + ++ + LLE + N D G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 466 LTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIP 524
L A + +L+ + A ++ + G + LI A + G++E L+ + DV+
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
K+A++ A NV +LL + ++ +TPL A + + E ++L+D
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
A D IA IV +
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 169 bits (432), Expect = 5e-49
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 2/170 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGA-DVNAEDNDNWSPLTYAAREGYTDVCAEL 209
+ +D+ G T L A + L+ A D++A +D +PL AAR + +L
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
++ AD+ D G S L WA+ + D +LL A+ + N + L AA G
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
E +L+ A ++ D P A + H +IV +L +
Sbjct: 172 ETAKVLLDHFANRDITDH-MDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
Score = 166 bits (424), Expect = 7e-48
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK-P 453
G T L A R + LL+A A+ ++ TPL A + V ++L+ +
Sbjct: 24 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+++A DG T L +A + + L+NS A +N D G S L A +
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
LLK + D+ +T ++ A +G+ K+LL + +I P A + +
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 574 LEAIQMLIDKKAKI 587
+ +++L +
Sbjct: 204 HDIVRLLDEYNLVR 217
Score = 153 bits (390), Expect = 5e-43
Identities = 57/262 (21%), Positives = 95/262 (36%), Gaps = 46/262 (17%)
Query: 24 GGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSLKERKTA 83
G ++ + + + N TD + +TA
Sbjct: 1 GDAPAVISDFIYQGASLH------------NQTD--------------------RTGETA 28
Query: 84 VYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA--EDNLDSLQT 141
++ A K LL A+ D I L + A D Q
Sbjct: 29 LHLAARYSRSDAAKRLLEASADANIQDN-----MGRTPL-------HAAVSADAQGVFQI 76
Query: 142 FLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREG 201
+ N+ T D R +G T L+ AA+ + +L+ ADVNA D+ S L +AA
Sbjct: 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136
Query: 202 YTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLI 261
D LL +GA+ + ++ +PL A+ +G +T +LLD A+ + +
Sbjct: 137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 196
Query: 262 WAAGRGYTEIVALLVKKGAKVN 283
A R + +IV LL + +
Sbjct: 197 IAQERMHHDIVRLLDEYNLVRS 218
Score = 143 bits (363), Expect = 2e-39
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Query: 439 GNFTEVVELLLEYKPNV-NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDS 497
G+ V+ + ++ N D+ G TAL +A + + A LL + A NIQD G +
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 498 NLIHAVKGGHRGIVEALL-KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEI 556
L AV +G+ + L+ + D+D + T + A +L+ L+ ++ D+
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 557 ATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI-- 614
G + L A N++A +L+ A + R +T L +A R S +V +
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Query: 615 ---RNPKNN 620
R+ ++
Sbjct: 181 FANRDITDH 189
Score = 103 bits (260), Expect = 3e-25
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G + L WA +V+ +LLK GAN D+ TPL +A E ++LL++ N
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+ D IA + +++I LL +
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 64.0 bits (157), Expect = 9e-12
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 539 GNVPILKLLLTANPDLEIAT-KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTV 597
++ + L T + G+T L A + +A + L++ A D G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 598 LHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
LH A+ A ++ + ++ IRN ++ G TP
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDL--DARMHDGTTP 95
Score = 57.4 bits (140), Expect = 2e-09
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 267 GYTEIVALLVKKGAKV-NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYM 325
+++ + +GA + N D+ G T L A R + LL+A A+ ++
Sbjct: 2 DAPAVISDFIYQGASLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 326 PLYSSALAD 334
PL+++ AD
Sbjct: 61 PLHAAVSAD 69
Score = 46.2 bits (111), Expect = 9e-06
Identities = 30/194 (15%), Positives = 68/194 (35%), Gaps = 31/194 (15%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALL-KKYVDVDIPGKVRKLSD---ALNVTDAND 60
D + + D G + L AV +G+ + L+ + D+D ++ D L +
Sbjct: 50 DANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-----RMHDGTTPLILAARLA 103
Query: 61 QRSTTRNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDS 118
+L++ + + K+A++ A NV +LL + ++
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-----RE 158
Query: 119 MVSLCYRTLQSYIA--EDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVR 174
L ++A E + ++ + L++ A+ D A ++ VR
Sbjct: 159 ETPL-------FLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVR 208
Query: 175 ELVTRGADVNAEDN 188
L + + +
Sbjct: 209 LLDEYNLVRSPQLH 222
Score = 38.5 bits (91), Expect = 0.003
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVA 425
P A + H +IV +L +
Sbjct: 190 MDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 177 bits (451), Expect = 4e-52
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
++ E +++ FL N R D T LM A G + + +LV +
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAIDKLVENFDKLE 62
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
+D + + L +A + + +LL G+++ +D G +PLMW+ G+++ LL+
Sbjct: 63 DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 245 KNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
A+VN + LI A+ G +EIV L++ GA ++ D G T A G E
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL-TGLTAEASARIFGRQE 181
Query: 305 IVDILLKAGA 314
++ I +
Sbjct: 182 VIKIFTEVRR 191
Score = 162 bits (413), Expect = 9e-47
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 11/168 (6%)
Query: 152 DRDDNGGTALMFAAQKGKLSFVRELVTRGADV--NAEDNDNWSPLTYAAREGYTDVCAEL 209
D NG +K + + D N D+ N +PL A G + +L
Sbjct: 3 HMDKNGEIVEKIKDEKS--------INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKL 54
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
+++ LE +D+ G + L+WA LL K ++VN + L+W+ GY+
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
E+ L++ GA VN + G TPL+ A + G EIV LL+ GA++
Sbjct: 115 EMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGADIS 161
Score = 144 bits (366), Expect = 4e-40
Identities = 47/154 (30%), Positives = 71/154 (46%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
Y TPL+ AC G +D L++ ++ + T L+ A N + E LL N
Sbjct: 34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VN D G T L + GY E++ LL GA +N ++ G++ LI A K G IV+ L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
L+ D+ TA +A G ++K+
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 142 bits (362), Expect = 1e-39
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 9/196 (4%)
Query: 419 GANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIA 478
G+++D G + + + ++ L Y+ D T L +AC G
Sbjct: 1 GSHMDKNG---EIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAI 51
Query: 479 VLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEK 538
L+ + + +D G + LI AVK GI E LL K +V+ KT + ++
Sbjct: 52 DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111
Query: 539 GNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVL 598
G + LL ++ +G+TPL+ A K E ++ L++ A I+A D G T
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE 171
Query: 599 HIAMRARSKTIVEVFI 614
A + ++++F
Sbjct: 172 ASARIFGRQEVIKIFT 187
Score = 142 bits (360), Expect = 2e-39
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 6/191 (3%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G K + +D L + Y TPL+VA + ++ L+E
Sbjct: 7 NGEIVEKIKDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ D +G TAL A K+ IA LL+ G+ +N +D SG + L+ ++ G+ + L
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
L+ +V+ E +T + A + G I+K LL D+ G T A
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 575 EAIQMLIDKKA 585
E I++ + +
Sbjct: 181 EVIKIFTEVRR 191
Score = 122 bits (308), Expect = 3e-32
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 14/140 (10%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADL--EHRDMGGWSPLMWASYKGHTD 237
G+ + D + + D +RD +PLM A G +
Sbjct: 1 GSHM---DKNGEIVEKIKDEKSIN--------QNLDFLRNYRDSYNRTPLMVACMLGMEN 49
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWA 297
+ L++ + ++LIWA I L+ KG+ VN D G TPL+W+
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWS 108
Query: 298 CRKGHVEIVDILLKAGANVD 317
G+ E+ LL+ GANV+
Sbjct: 109 IIFGYSEMSYFLLEHGANVN 128
Score = 105 bits (265), Expect = 2e-26
Identities = 39/238 (16%), Positives = 79/238 (33%), Gaps = 77/238 (32%)
Query: 10 RDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLL 69
RD + L+ A G ++ L++ + ++
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLED--------------------------- 63
Query: 70 DKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQS 129
K+ TA+ AV+ + I + LL+ ++
Sbjct: 64 -KDIE-----GSTALIWAVKNNRLGIAEKLLSKGSNVNT--------------------- 96
Query: 130 YIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDND 189
+D +G T LM++ G L+ GA+VN + +
Sbjct: 97 -----------------------KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+PL A++ G +++ +LL+ GAD+ RD+ G + A G + + + +
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 70.5 bits (174), Expect = 4e-14
Identities = 36/206 (17%), Positives = 60/206 (29%), Gaps = 77/206 (37%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D G + LI AVK GI E LL K +V+
Sbjct: 63 DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-------------------------- 96
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
K+ KT + ++ G + LL ++
Sbjct: 97 --KDFSG-----KTPLMWSIIFGYSEMSYFLLEHGANVND-------------------- 129
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
R+ G T L+ A++ G+ V++L+ GAD++A D
Sbjct: 130 ------------------------RNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGA 214
+ A G +V +
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTEVRR 191
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 176 bits (450), Expect = 7e-52
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
L + + ++ L++ D+ D G T L A + + L+ RGAD+N
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLL 243
+++ + SP YA +G T++ A +L H DL + G + L+ A+ KGH D V LLL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 244 DK-NADVNAHGNYHISSLIWAA-----GRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWA 297
+ D++ ++ ++LI A + Y +IV LL++ GA ++ D G T + +A
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN-SGRTAMDYA 185
Query: 298 CRKGHVEIVDILLK 311
+KG+ EI IL +
Sbjct: 186 NQKGYTEISKILAQ 199
Score = 174 bits (445), Expect = 3e-51
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+ G L A Q+ L V+ D + +PL A ++ L+D
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYTEI 271
GAD+ ++ SP ++A +G T+ +A +L D+N H Y ++LI AA +G+ +
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 272 VALLVKKG-AKVNVGDKVYGTTPLVWAC-----RKGHVEIVDILLKAGANVDVA 319
V LL++ G ++ + +G T L+ A + + +IV +L++ GA+ +
Sbjct: 122 VKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174
Score = 162 bits (413), Expect = 1e-46
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 7/194 (3%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
L A ++ ++ +IL VD TPL +A N E+ + L++ +
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAVKGGHRGIVEA 513
+N + + A G EI +L +N +R G + LI A + GH V+
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 514 LLKK-YVDVDIPGKERKTAVYTAV-----EKGNVPILKLLLTANPDLEIATKDGDTPLLK 567
LL+ D+D TA+ AV + I+KLL+ D I G T +
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Query: 568 AVKTRNLEAIQMLI 581
A + E ++L
Sbjct: 185 ANQKGYTEISKILA 198
Score = 133 bits (338), Expect = 3e-36
Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 84/275 (30%)
Query: 10 RDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLL 69
+ + L A + + + E L V + D
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-------------DEVD------------ 36
Query: 70 DKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQS 129
E T + AV ++ I K L+ D+ +
Sbjct: 37 --------TEGNTPLNIAVHNNDIEIAKALIDRGADINL--------------------- 67
Query: 130 YIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA-DVNAEDN 188
++ + ++A +G+ + ++ D+N +
Sbjct: 68 -----------------------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104
Query: 189 DNWSPLTYAAREGYTDVCAELLDHG-ADLEHRDMGGWSPLMWA-----SYKGHTDTVALL 242
+ L AA +G+ D LL+ G D++ ++ G++ L+ A + + D V LL
Sbjct: 105 YGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164
Query: 243 LDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
++ AD + N +++ +A +GYTEI +L +
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 117 bits (297), Expect = 2e-30
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGA-NVDVAGLYCWTPLLVATLGNFTEVVELLLEY-K 452
+P ++A +G EI+ +LK +++ Y L+ A + V+LLLE +
Sbjct: 71 ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 453 PNVNALDKDGCTALTIAC-----KDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH 507
+++ + G TAL A Y +I LL+ +GA +I+D SG + + +A + G+
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190
Query: 508 RGIVEALLK 516
I + L +
Sbjct: 191 TEISKILAQ 199
Score = 117 bits (295), Expect = 3e-30
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
+ L A + ++ +L ++ ++ D G++ L AV I +AL+ +
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLL-TANPDLEIATKDGDTPLLKAVKTRNLEAI 577
D+++ + A +G IL +L A PDL + G L+ A + +++ +
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122
Query: 578 QMLIDK-KAKITAVDKRGDTVLHIAMRARS-----KTIVEVFI 614
++L++ + I + G T L A+ R + IV++ +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Score = 109 bits (275), Expect = 1e-27
Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 82/244 (33%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ D G++ L AV I +AL+ + D+++
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-------------------------- 67
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+N + A +G IL +L
Sbjct: 68 --QNSI-----SDSPYLYAGAQGRTEILAYML---------------------------- 92
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRG-ADVNAED 187
+ D + + GG AL+ AA+KG + V+ L+ G D++ ++
Sbjct: 93 KHATPD---------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 188 NDNWSPLTYAA-----REGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
+ ++ L A + Y D+ L+++GAD +D G + + +A+ KG+T+ +L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Query: 243 LDKN 246
N
Sbjct: 198 AQYN 201
Score = 64.0 bits (157), Expect = 6e-12
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 395 YGTTPLVWAC-----RKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLL 449
+G T L+ A + + +IV +L++ GA+ + T + A +TE+ ++L
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 450 EY 451
+Y
Sbjct: 199 QY 200
Score = 42.8 bits (102), Expect = 1e-04
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
L A ++ ++ +IL VD PL +
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV 47
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 176 bits (448), Expect = 2e-51
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 7/182 (3%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
D T KG+ + V + +PL AA+ G E L
Sbjct: 39 IYITDMSDTNWWKGTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECL 93
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK-NADVNAHGNYHISSLIWAAGRGYT 269
D+ + D G + L WA + GH D V +L + N ++N ++L AA +GY
Sbjct: 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYS 329
+IV LL+ KGA+ ++ + A ++ A ++ Y+
Sbjct: 154 DIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDED 212
Query: 330 SA 331
S
Sbjct: 213 SD 214
Score = 162 bits (411), Expect = 4e-46
Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 6/208 (2%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G + A D L ++ T T T ++
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN-----Y 65
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
V + L A K G L++ +N D++G + L A GGH+ IVE L
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125
Query: 515 LKKY-VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
+ ++++ K TA++ A KG I++LLL ++ + A
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185
Query: 574 LEAIQMLIDKKAKITAVDKRGDTVLHIA 601
++ A T + +
Sbjct: 186 ASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 162 bits (411), Expect = 4e-46
Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 7/167 (4%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
G + A + EL D+ + + + +G T +
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----P 62
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
+ + +PL A+ +G+ + LD VN ++L WA G+ +IV
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 273 ALLV-KKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
+L + ++N +K G T L A KG+ +IV +LL GA D+
Sbjct: 123 EMLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 147 bits (372), Expect = 1e-40
Identities = 37/252 (14%), Positives = 69/252 (27%), Gaps = 46/252 (18%)
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVG 348
G + A D L ++ + +
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS---------------- 54
Query: 349 LYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGH 408
G++ L+P + PL A ++G+
Sbjct: 55 ------KGRTGLIPSNYVAEQA-----------------------ESIDNPLHEAAKRGN 85
Query: 409 VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLL-EYKPNVNALDKDGCTALT 467
+ + L V+ T L A G ++VE+L + +N +K G TAL
Sbjct: 86 LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145
Query: 468 IACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKE 527
A GY +I LLL GA ++++ A +++ + E
Sbjct: 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE 205
Query: 528 RKTAVYTAVEKG 539
+ +
Sbjct: 206 DYLDDEDSDLEH 217
Score = 138 bits (349), Expect = 2e-37
Identities = 38/286 (13%), Positives = 70/286 (24%), Gaps = 80/286 (27%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G + A Y T L + D+ +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDM--------------------------- 44
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLA 342
T KG ++ V PL+ +A
Sbjct: 45 -------SDTNWWKGTSKGRTGLI-----PSNYVAEQAESIDNPLHEAA----------- 81
Query: 343 TPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVW 402
K G+ ++ V G+T L W
Sbjct: 82 ---------KRGN---------LSWLRECLDNRVGVNGLDK-----------AGSTALYW 112
Query: 403 ACRKGHVEIVDILL-KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKD 461
AC GH +IV++L + ++ T L A + ++V+LLL + + +
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
Query: 462 GCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH 507
A +A + + A + + + + H
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 129 bits (327), Expect = 2e-34
Identities = 38/262 (14%), Positives = 71/262 (27%), Gaps = 54/262 (20%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
K + G + A+ + L + D+ ++ T+ S R
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI-------TDMSDTNWWKGTSKGRTG 59
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
L + + ++ A ++GN+ L+ L +
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------------------ 101
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVT-RGADVNA 185
D G TAL +A G V L T ++N
Sbjct: 102 --------------------------LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
++ + L AA +GY D+ LL GA + R++ A+ +
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195
Query: 246 NADVNAHGNYHISSLIWAAGRG 267
+A +
Sbjct: 196 DAVRTLSNAEDYLDDEDSDLEH 217
Score = 125 bits (316), Expect = 5e-33
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 7/149 (4%)
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
+ A EL D+ + + + KG T +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI---- 61
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHV 303
+ V + L AA RG + + VN DK G+T L WAC GH
Sbjct: 62 -PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHK 119
Query: 304 EIVDILL-KAGANVDVAGLWAYMPLYSSA 331
+IV++L + ++ L+++A
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAA 148
Score = 114 bits (288), Expect = 3e-29
Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 11/171 (6%)
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
K G + A L I D+N G G++ +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN- 64
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
V + ++ A ++GN+ L+ L + K G T L A + +
Sbjct: 65 ----YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120
Query: 576 AIQMLIDKK-AKITAVDKRGDTVLHIAMRARSKTIVEVFIR-----NPKNN 620
++ML + ++ +K GDT LH A IV++ + + +N
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Score = 98.1 bits (245), Expect = 2e-23
Identities = 37/228 (16%), Positives = 62/228 (27%), Gaps = 78/228 (34%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
++ S D+ L A K G+ + L V V N D
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-------------NGLD----------- 103
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT-ANPDLEIATKTLPRSDSMVSLCYRTL 127
K TA+Y A G+ I+++L T N +L
Sbjct: 104 ---------KAGSTALYWACHGGHKDIVEMLFTQPNIELNQ------------------- 135
Query: 128 QSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED 187
++ G TAL AA KG V+ L+ +GA + +
Sbjct: 136 -------------------------QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGH 235
+ A + + A + + + + H
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 52.2 bits (126), Expect = 9e-08
Identities = 8/67 (11%), Positives = 17/67 (25%)
Query: 554 LEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613
K G + +A+ T L ++ I + DT ++
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 614 IRNPKNN 620
+
Sbjct: 65 YVAEQAE 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 172 bits (439), Expect = 6e-51
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+ G L AA +G L + L+ +VNA++ + L + G ++ LL G
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRG 60
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVA 273
A+ + +D G++ + A+ G DT+ LL+ ADVN N L AA G+ +V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 274 LLVKKGAK-VNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
LVK A V + G T A G E+V ++ GA
Sbjct: 121 FLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANGA 161
Score = 139 bits (353), Expect = 9e-39
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
L A +G +E + LL+ NV+ + T L V LGN E+ LL N
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANP 63
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+ D+ G + A + G+ + LL A +NI+D G+ L A K GH +VE L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 516 KK-YVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
K +V + TA A G ++ L+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 130 bits (329), Expect = 2e-35
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ ++ G TAL G R L+ RGA+ + +D ++ + AAR G+ D LL
Sbjct: 32 NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL 90
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA-DVNAHGNYHISSLIWAAGRGYT 269
+ AD+ D G PL A+ +GH V L+ A +V + ++ A G
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 270 EIVALLVKKGA 280
E+V+L+ GA
Sbjct: 151 EVVSLMQANGA 161
Score = 125 bits (317), Expect = 8e-34
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
L A E + LL+ NVNA + G TAL + G EIA LL GA +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD 64
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
++DR+G + + A + G ++ LL+ DV+I E ++ A ++G++ +++ L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 550 AN-PDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
++ GDT A E + ++ A
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 118 bits (299), Expect = 3e-31
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G T L + G+ EI LL GAN D+ + + A F + ++ LLE++ +
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAY-INIQDRSGDSNLIHAVKGGHRGIVEA 513
VN D +G L +A K+G+ + L+ A + ++ GD+ A G +V
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 514 LLKK 517
+
Sbjct: 156 MQAN 159
Score = 114 bits (288), Expect = 8e-30
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 2/158 (1%)
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
+ + L A G E LL + +N Q+ G + L +K G+ I LL +
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLR 59
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAI 577
+ D+ + ++ A G + L+ LL D+ I +G+ PL A K +L +
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 578 QMLIDKKAK-ITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+ L+ A + + +GDT +A +V +
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 108 bits (273), Expect = 8e-28
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQ 140
+ +A +G++ L LL N ++ RT + N + +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGF-----------GRTALQVMKLGNPEIAR 54
Query: 141 TFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAA 198
L A+ +D G + AA+ G L ++ L+ ADVN EDN+ PL AA
Sbjct: 55 RLLLRG---ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 199 REGYTDVCAELLDHGA-DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+EG+ V L+ H A ++ HR+ G + A G + V+L+ A
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 104 bits (261), Expect = 4e-26
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 222 GGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAK 281
+ L A+ +G + + LL N +VNA + ++L G EI L+ +GA
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62
Query: 282 VNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
++ D+ G + A R G ++ + LL+ A+V++ +PL+ +A
Sbjct: 63 PDLKDR-TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Score = 38.1 bits (90), Expect = 0.002
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGA 420
G T A G E+V ++ GA
Sbjct: 136 KGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.8 bits (84), Expect = 0.016
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 76/173 (43%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+DR+G + + A + G ++ LL+ DV N+ D
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-------------NIED----------- 100
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
E ++ A ++G++ +++ L+
Sbjct: 101 ---------NEGNLPLHLAAKEGHLRVVEFLV---------------------------- 123
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
+ A + R+ G TA A G+ V + GA
Sbjct: 124 KHTASN---------------VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 171 bits (436), Expect = 8e-51
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
++ + + L AA G + +LL+ GAD + G P+ G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 240 ALLLDKNADVNAHGNYHISS-LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWAC 298
LLL A+ N ++ + AA G+ + + +L + GA+++V D +G P+ A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA-WGRLPVDLAE 119
Query: 299 RKGHVEIVDILLKAGAN 315
+GH +I L A +
Sbjct: 120 EQGHRDIARYLHAATGD 136
Score = 136 bits (344), Expect = 7e-38
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
+ + L A+ +G +TV LL+ AD NA + + G ++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
LL+ GA+ N D T P+ A R+G ++ + +L +AGA +DV W +P+ +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Score = 129 bits (327), Expect = 1e-35
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
L A +G VE V LL+AGA+ + + P+ V +G+ +V ELLL +
Sbjct: 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGA 68
Query: 454 NVNALDKDGCT-ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
N D T + A ++G+ + V+L +GA +++ D G + A + GHR I
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 513 ALLKK 517
L
Sbjct: 129 YLHAA 133
Score = 119 bits (301), Expect = 6e-32
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Query: 418 AGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEI 477
+ + G L A E V LLE + NAL++ G + + G ++
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59
Query: 478 AVLLLNSGAYINIQDRSGDSN-LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAV 536
A LLL GA N D + + + A + G + L + +D+ + V A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Query: 537 EKGNVPILKLLLTANPD 553
E+G+ I + L A D
Sbjct: 120 EQGHRDIARYLHAATGD 136
Score = 113 bits (285), Expect = 1e-29
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNW-SPLTYAAREGYTDVCAEL 209
+ + G + G L+ GA+ N D P+ AAREG+ D L
Sbjct: 39 NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
GA L+ D G P+ A +GH D L D
Sbjct: 98 HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 102 bits (258), Expect = 5e-26
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWT-PLLVATLGNFTEVVELLLEYKP 453
+G P+ G ++ ++LL GA + A T P+ A F + + +L
Sbjct: 44 FGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
++ D G + +A + G+ +IA L +
Sbjct: 103 RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 99.1 bits (248), Expect = 8e-25
Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 41/173 (23%)
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSE 338
+++ L A +G VE V LL+AGA+ + + P+
Sbjct: 2 SPGIHMLGG-SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ---------- 50
Query: 339 PGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTT 398
GS + + G +P + T
Sbjct: 51 -----------VMMMGS---------AQVAELLLLHGAEPN----------CADPATLTR 80
Query: 399 PLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
P+ A R+G ++ + +L +AGA +DV + P+ +A ++ L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 91.7 bits (229), Expect = 3e-22
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 2/133 (1%)
Query: 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544
I++ S D+ L A G V LL+ D + + + + + G+ +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 545 KLLLTANPDLEIATKDGDT-PLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMR 603
+LLL + A T P+ A + L+ + +L A++ D G + +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 604 ARSKTIVEVFIRN 616
+ I
Sbjct: 121 QGHRDIARYLHAA 133
Score = 79.8 bits (198), Expect = 5e-18
Identities = 31/208 (14%), Positives = 51/208 (24%), Gaps = 79/208 (37%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
S D+ L A G V LL+ D N + +
Sbjct: 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADP-------------NALNRFGR------- 46
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+ + G+ + +LLL + A
Sbjct: 47 -------------RPIQVMM-MGSAQVAELLLLHGAEPNCA------------------- 73
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGT-ALMFAAQKGKLSFVRELVTRGADVNAED 187
D T + AA++G L + L GA ++ D
Sbjct: 74 -------------------------DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108
Query: 188 NDNWSPLTYAAREGYTDVCAELLDHGAD 215
P+ A +G+ D+ L D
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 54.8 bits (133), Expect = 3e-09
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTI 609
+P + + D L A +E ++ L++ A A+++ G + + M ++ +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ-V 59
Query: 610 VEVFIRN 616
E+ + +
Sbjct: 60 AELLLLH 66
Score = 46.3 bits (111), Expect = 2e-06
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGAN 421
+G P+ A +GH +I L A +
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHAATGD 136
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 170 bits (434), Expect = 6e-50
Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 6/175 (3%)
Query: 144 ENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYT 203
E + + G + + G ADV +E +P AAR+
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADE 57
Query: 204 DVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA-HGNYHISSLIW 262
L D++ D G + L++ + G V LL + AD++ +++L
Sbjct: 58 QA-LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 263 AAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
AAG E+V LV+ GA + V D+ G T L A ++ G +
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDE-RGLTALELAREILKTTPKGNPMQFGRRIG 170
Score = 145 bits (368), Expect = 1e-40
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 20/162 (12%)
Query: 152 DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLD 211
D T AA+K + +L+ DV+A D + + L + A G L +
Sbjct: 39 DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 97
Query: 212 HGADLEHRDM-GGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
GADL+HRDM GG + L A+ + V L++ AD+ +++L A T
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 157
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKA 312
++ G ++ +++++L
Sbjct: 158 PKGNPMQFGRRIG------------------LEKVINVLEGQ 181
Score = 141 bits (358), Expect = 3e-39
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
+ + ++G++ AD+ +P A+ K +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQAL 60
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACR 299
+ LL ++ DV+A ++L++ AG G + V LL + GA ++ D G T L A
Sbjct: 61 SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 300 KGHVEIVDILLKAGANVDVA 319
E+V+ L++ GA+++V
Sbjct: 120 YVRPEVVEALVELGADIEVE 139
Score = 134 bits (341), Expect = 8e-37
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 7/163 (4%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G + + GH A+V TP A + + LLE +V
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLLE-DRDV 69
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD-RSGDSNLIHAVKGGHRGIVEAL 514
+A+D++G TAL G + LL +GA ++ +D R G + L A +VEAL
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT--ANPDLE 555
++ D+++ + TA+ A E + LE
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
Score = 119 bits (301), Expect = 2e-31
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S TP A RK + + LL+ +VD T LL + V LL E
Sbjct: 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
Query: 454 NVNALD-KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
+++ D + G TAL +A E+ L+ GA I ++D G + L A +
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 160
Query: 513 ALLKK 517
++
Sbjct: 161 NPMQF 165
Score = 116 bits (294), Expect = 2e-30
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 24/176 (13%)
Query: 82 TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA--EDNLDSL 139
+ G+ P D+ +T + A + + +L
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSEYET--------PW-------WTAARKADEQAL 60
Query: 140 QTFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED-NDNWSPLTY 196
LE+ D D+NG TAL+F A G VR L GAD++ D + L
Sbjct: 61 SQLLED----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAH 252
AA +V L++ GAD+E D G + L A T + +
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
Score = 112 bits (283), Expect = 6e-29
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 5/164 (3%)
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
K + +G I KDG+ V A + + + A + +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETP---WWTAARKADEQAL 60
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIA-TKDGDTPLLKAVK 570
LL+ DVD + +TA+ G+ ++LL A DL+ + G T L A
Sbjct: 61 SQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 571 TRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
E ++ L++ A I D+RG T L +A T +
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Score = 109 bits (275), Expect = 8e-28
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL-YCWTPLLVATLGNFTEVVELLLEYK 452
G T L++ G + V +L +AGA++D + T L +A EVVE L+E
Sbjct: 74 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
++ D+ G TAL +A + + G I ++
Sbjct: 134 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 41.3 bits (98), Expect = 2e-04
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAG 320
G + + GH A+V
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY 44
Score = 33.6 bits (78), Expect = 0.10
Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 29/120 (24%)
Query: 10 RDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQR------- 62
D +G + L+ G V L + D+ + D
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADL-------------DHRDMRGGLTALHMAA 118
Query: 63 -----STTRNLLDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTL 113
L++ + + TA+ A E + LE L
Sbjct: 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 178
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 171 bits (435), Expect = 2e-49
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 11/229 (4%)
Query: 396 GTTPLVWACRKGHV-EIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
PL AC + ++ ++L + + PL + E+ LL N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 455 VNA---LDKDGCTALTIACKDGYYEIAVLLLN--SGAYINIQDRSGDSNLIHAVKGGHRG 509
VN D G T IAC G E+ L + +N G + L AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 510 IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP-DLEIATKDGDTPLLKA 568
+ + L++ V I K + ++ A G++ +++LL + K G TPL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 569 VKTRNLEAIQMLIDKK-AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
+ + +A +L++K A+ VD +G +A+ + + + F+ N
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN 227
Score = 166 bits (422), Expect = 1e-47
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 157 GGTALMFAAQKGKLSFVRE-LVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
L A + + V+E L ++ + + +D D PL ++ ++ + LL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 216 LEHRDMG---GWSPLMWASYKGHTDTVALLLDK--NADVNAHGNYHISSLIWAAGRGYTE 270
+ D GW+P A G+ + V L D+ D+N N ++ L A G+ + E
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+ L++ GA V + DK + PL A G ++++++L G +
Sbjct: 122 VSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKS 165
Score = 164 bits (418), Expect = 5e-47
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE---DND 189
E+ +Q L +K ++ +D +G L ++ L+++ +VN + D+
Sbjct: 12 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS 71
Query: 190 NWSPLTYAAREGYTDVCAELLDH--GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
W+P A G +V L D DL G + L A K + L++ A
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKG-AKVNVGDKVYGTTPLVWACRKGHVEIV 306
V ++ L AA G +++ LL G + VN DK G TPL A +GH +
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAA 190
Query: 307 DILL-KAGANVD 317
+L+ K GA D
Sbjct: 191 VLLVEKYGAEYD 202
Score = 149 bits (379), Expect = 1e-41
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 9/210 (4%)
Query: 431 TPLLVATL-GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
PL A + F +V ELL + D+DG L + +EI LL+ +N
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 490 IQDRSGDSN---LIHAVKGGHRGIVEALLKKYVDVDI--PGKERKTAVYTAVEKGNVPIL 544
+ D DS A G+ +V++L + + D+ + T ++ AV K +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK-KAKITAVDKRGDTVLHIAMR 603
+ L+ + I K PL +A +L+ I++L K+ + DK+G T L A+
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 604 ARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
+ + + G
Sbjct: 184 EGHGDAAVLLVEKYGAEY--DLVDNKGAKA 211
Score = 148 bits (377), Expect = 3e-41
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 5/159 (3%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTR--GADVNAEDNDNWSPLTYAAREGYTDVCAE 208
D DD+G T A G L V+ L R D+N N + L A + + +V
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 209 LLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK-NADVNAHGNYHISSLIWAAGRG 267
L+++GA + +D PL A+ G + LL + VN + L A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 268 YTEIVALLV-KKGAKVNVGDKVYGTTPLVWACRKGHVEI 305
+ + LLV K GA+ ++ D G A + +
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALNEQVKKF 223
Score = 131 bits (332), Expect = 5e-35
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 395 YGTTPLVWACRKGHVEIVDILL--KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
G TP AC G++E+V L +++ T L +A + EV + L+E
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSG-AYINIQDRSGDSNLIHAVKGGHRGIV 511
+V DK L A G ++ LL G + +N QD+ G + L HA+ GH
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 512 EALLKKY-VDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
L++KY + D+ + A A+ + K L
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQVK---KFFL 225
Score = 126 bits (320), Expect = 2e-33
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 5/144 (3%)
Query: 193 PLTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
PL A E ELL + L +D G PL W+ + + LL K +VN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 252 ---HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDK-VYGTTPLVWACRKGHVEIVD 307
+ + A G E+V L + K ++ G T L A K E+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 308 ILLKAGANVDVAGLWAYMPLYSSA 331
L++ GA+V + + +PL+ +A
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAA 148
Score = 124 bits (315), Expect = 1e-32
Identities = 51/271 (18%), Positives = 82/271 (30%), Gaps = 77/271 (28%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
++D+ G L +V I LL K +V N+ D D
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-------------NLDDYPD-------- 69
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
T + A GN+ ++K L ++
Sbjct: 70 ---------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-------------------- 100
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
+ + G T L A K + L+ GA V +D
Sbjct: 101 ----------------------NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 189 DNWSPLTYAAREGYTDVCAELLDHG-ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN- 246
N PL AA G + L G + + +D GW+PL A +GH D LL++K
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 247 ADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
A+ + N + A ++ +
Sbjct: 199 AEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 171 bits (435), Expect = 2e-49
Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 11/228 (4%)
Query: 395 YGTTPLVWACRKGH----VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLE 450
G + L A +E++ + A ++ TPL +A + N E+ E LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 451 YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGA------YINIQDRSGDSNLIHAVK 504
+ D G T L +AC+ G +L S + + +G + L A
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 505 GGHRGIVEALLKKYVDVDIP-GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDT 563
G+ GIVE L+ DV+ +TA++ AV+ N ++ LLL D+ T G +
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 564 PLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVE 611
P + Q L + + + + E
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 166 bits (423), Expect = 1e-47
Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 8/174 (4%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ +++ T L A + L+ G D D +PL A +G L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 211 DHGAD------LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH-ISSLIWA 263
L+ + G + L AS G+ V LL+ ADVNA + ++L A
Sbjct: 99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158
Query: 264 AGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
++V+LL+K GA VN G +P + I L +
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENL 211
Score = 163 bits (414), Expect = 2e-46
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELV----TRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
++G + L A + + E++ A +N ++N +PL A ++ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD------VNAHGNYHISSLIWA 263
L G D E RD G +PL A +G +V +L + A + L A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 264 AGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+ GY IV LLV GA VN + G T L A + ++V +LLK GA+V+
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 134 bits (340), Expect = 5e-36
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 8/162 (4%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGAD------VNAEDNDNWSPLTYAAREGYTDVC 206
RD G T L A ++G L+ V L + A + + + L A+ GY +
Sbjct: 74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133
Query: 207 AELLDHGADLEHRD-MGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAG 265
L+ GAD+ ++ G + L A + D V+LLL ADVN S G
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 193
Query: 266 RGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
R T I L + + + E +
Sbjct: 194 RPSTRIQQQLGQLTLENLQMLP-ESEDEESYDTESEFTEFTE 234
Score = 126 bits (319), Expect = 4e-33
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 185 AEDNDNWSPLTYAAREGYTDVCAE----LLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
D S L A + E + A L ++ +PL A +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 241 LLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV-----YGTTPLV 295
LL D + L A +G V +L + ++ + G T L
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 296 WACRKGHVEIVDILLKAGANVD 317
A G++ IV++L+ GA+V+
Sbjct: 123 LASIHGYLGIVELLVSLGADVN 144
Score = 119 bits (302), Expect = 7e-31
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 15/200 (7%)
Query: 457 ALDKDGCTALTIACKDGY----YEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
L +DG + L +A E+ + A++N Q+ + L AV I E
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL------TANPDLEIATKDGDTPLL 566
ALL D ++ T ++ A E+G + + +L + L+ +G T L
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 567 KAVKTRNLEAIQMLIDKKAKITAVDKR-GDTVLHIAMRARSKTIVEVFIRNPKNNILLYR 625
A L +++L+ A + A + G T LH+A+ ++ +V + + K + R
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL---KCGADVNR 179
Query: 626 PNKAGETPYSI-DMNNQKSI 644
G +PY + I
Sbjct: 180 VTYQGYSPYQLTWGRPSTRI 199
Score = 94.5 bits (236), Expect = 5e-22
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 223 GWSPLMWASYKGHTDT----VALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKK 278
G S L A + + A +N N + L A EI L+
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 279 GAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
G + D G TPL AC +G + V +L ++ +
Sbjct: 68 GCDPELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Score = 89.5 bits (223), Expect = 2e-20
Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 70/231 (30%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
RD G++ L A + G V L + + + T+
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL-------KATN----------- 114
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
T ++ A G + I++LL++ D+
Sbjct: 115 ---------YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC---------------- 149
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
NG TAL A V L+ GADVN
Sbjct: 150 ---------------------------NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 182
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
+SP T + +L + + + T+
Sbjct: 183 QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 29.8 bits (68), Expect = 2.3
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 33/96 (34%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
DV+++ +G + L AV + +V LLK DV
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV------------------------ 177
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLL 100
N + + + + I + L
Sbjct: 178 --NRVTYQ-------GYSPYQLTWGRPSTRIQQQLG 204
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 171 bits (435), Expect = 2e-49
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+ G +L + E + G V + + L ++ EG D+ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVA 273
D + G + L A GHT+ V L+ +VNA + + L AA ++
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 274 LLVKKGAKVNVGDK--VYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
LV+ GA V + +G+ + L + +
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
Score = 161 bits (410), Expect = 9e-46
Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 7/168 (4%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+ L+ ++ +G+ V+ ++ D + +++ + L A G+T++ L+ G
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA---HGNYHISSLIWAAGRGYTE 270
++ D GW+PL A+ + L++ A V A + GYT+
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
L K+ + +K L + E + +K G + +
Sbjct: 154 CSQFLYGVQEKMGIMNK-GVIYALWDYEPQNDDE---LPMKEGDCMTI 197
Score = 154 bits (392), Expect = 3e-43
Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 9/211 (4%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G L R + + G V L LL ++L ++V+ ++ +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLP-LALLLDSSLEGEFDLVQRIIYEVDDP 63
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+ + +G TAL A G+ EI L+ G +N D G + L A + + + L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 516 KKYVDV---DIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTR 572
+ V + +E+G + L + I K L
Sbjct: 124 ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQN 183
Query: 573 NLEAIQMLIDKKAKITAVDKRGD--TVLHIA 601
+ E + + + +T + + + A
Sbjct: 184 DDE---LPMKEGDCMTIIHREDEDEIEWWWA 211
Score = 134 bits (339), Expect = 7e-36
Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 8/179 (4%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
L+ + +G ++V ++ + + T L A TE+V+ L+++ N
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN---LIHAVKGGHRGIV 511
VNA D DG T L A ++ L+ SGA + S ++ G+
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGD--TPLLKA 568
+ L + I K A++ + + +L + + I ++ + A
Sbjct: 156 QFLYGVQEKMGIMNKGVIYALWDYEPQND---DELPMKEGDCMTIIHREDEDEIEWWWA 211
Score = 133 bits (336), Expect = 2e-35
Identities = 31/210 (14%), Positives = 75/210 (35%), Gaps = 8/210 (3%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
L N + + + V + L + +G +++ ++ +
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ + G + L +AV GH IV+ L++ V+V+ + T ++ A NV + K L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 550 ANPDLEIATKDGD---TPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606
+ + T + ++ + Q L + K+ ++K L
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND 184
Query: 607 KTIVEVFIRNPKNNILLYRPNKAGETPYSI 636
E+ ++ +++R + E +
Sbjct: 185 D---ELPMKEGDCMTIIHRED-EDEIEWWW 210
Score = 131 bits (331), Expect = 7e-35
Identities = 45/296 (15%), Positives = 80/296 (27%), Gaps = 85/296 (28%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
+ +G +L + R + + V
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-------------KFNP------------- 35
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSY 130
+ + +G +++ ++ D +
Sbjct: 36 --------LPLALLLDSSLEGEFDLVQRIIYEVDDPSLP--------------------- 66
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
+D G TAL A G V+ LV G +VNA D+D
Sbjct: 67 -----------------------NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 191 WSPLTYAAREGYTDVCAELLDHGADLE---HRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
W+PL AA VC L++ GA + + DM + +G+T L
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 248 DVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV-YGTTPLVWACRKGH 302
+ I +L + E L +K+G + + + WA
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 114 bits (288), Expect = 5e-29
Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 8/194 (4%)
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
+ G +L + + + G + + L+ + G +V+ ++ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578
D +P E TA++ AV G+ I+K L+ ++ A DG TPL A N++ +
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 579 MLIDKKAKITAV---DKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP-Y 634
L++ A + A+ D + M + + + NK +
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK---MGIMNKGVIYALW 177
Query: 635 SIDMNNQKSILAQE 648
+ N + +E
Sbjct: 178 DYEPQNDDELPMKE 191
Score = 94.6 bits (236), Expect = 4e-22
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANV---DVAGLYCWTPLLVATLGNFTEVVELLLE 450
S G TPL A +V++ L+++GA V + + +T+ + L
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Query: 451 YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGD--SNLIHAVKGGHR 508
+ + ++K AL E+ + G + I R + A
Sbjct: 161 VQEKMGIMNKGVIYALWDYEPQNDDELP---MKEGDCMTIIHREDEDEIEWWWARLNDKE 217
Query: 509 GIV 511
G V
Sbjct: 218 GYV 220
Score = 90.0 bits (224), Expect = 2e-20
Identities = 40/269 (14%), Positives = 70/269 (26%), Gaps = 88/269 (32%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
K + + L+ + G +V+ ++ + D +
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-------------------------- 65
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
N E TA++ AV G+ I+K L+ ++ A
Sbjct: 66 --PN-----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAA------------------- 99
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
D +G T L AA + + LV GA V A
Sbjct: 100 -------------------------DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Query: 189 DN---WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+ + EGYT L + + G L + + L + +
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKE 191
Query: 246 NADVNA--HGNYHISSLIWAAGR---GYT 269
+ + WA GY
Sbjct: 192 GDCMTIIHREDEDEIEWWWARLNDKEGYV 220
Score = 68.8 bits (169), Expect = 3e-13
Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L + + + G +V L+ + +G ++V ++ + +
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66
Query: 320 GLWAYMPLYSSA 331
L+++
Sbjct: 67 NDEGITALHNAV 78
Score = 66.5 bits (163), Expect = 2e-12
Identities = 31/233 (13%), Positives = 57/233 (24%), Gaps = 80/233 (34%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
D S + G + L +AV GH IV+ L++ V+V N D
Sbjct: 62 DPSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNV-------------NAAD------- 100
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY 124
+ T ++ A NV + K L+ + + T +
Sbjct: 101 -------------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS------------ 135
Query: 125 RTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVN 184
D ++G + L +
Sbjct: 136 -----------------------------DMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADL--EHRDMGGWSPLMWASYKGH 235
+ L + ++ + G + HR+ WA
Sbjct: 167 IMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLNDK 216
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 167 bits (427), Expect = 4e-49
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 157 GGTALMFAAQKGKLSFVRELVTR-GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
G L AA +G + VR L+ R +A + + L G T + ELL GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+D G SP+ A+ G DT+ +L++ ADVN + A G+T +V+ L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
+ ++ D G TPL A ++G ++VDIL
Sbjct: 121 A-AESDLHRRDA-RGLTPLELALQRGAQDLVDILQG 154
Score = 138 bits (350), Expect = 2e-38
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILL-KAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
L A +G V+ V LL + + D + T L V G+ T + LL+ +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGAS 60
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D G + + A + G+ + +L+ GA +N+ D +G + AV+ GH +V L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
+ D+ T + A+++G ++ +L
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 134 bits (339), Expect = 7e-37
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
L A ++ ++ L + D + G TAL G + EL+ +GA N
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+D SP+ AAR G+ D L++HGAD+ D G P+ A +GHT V+ L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-A 122
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEIVALLVK 277
+D++ ++ L A RG ++V +L
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 123 bits (312), Expect = 4e-33
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+G T L G I LLK GA+ +V +P+ A F + +++L+E+ +
Sbjct: 35 FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 93
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VN D G + +A ++G+ + L + + ++ +D G + L A++ G + +V+ L
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 515 LK 516
Sbjct: 153 QG 154
Score = 110 bits (279), Expect = 1e-28
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKN-ADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAK 281
L A+ +G V LL + +A + ++L G T I L+K+GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 282 VNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
NV D GT+P+ A R G ++ + +L++ GA+V+V +P++ +
Sbjct: 61 PNVQDT-SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Score = 105 bits (266), Expect = 6e-27
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 3/154 (1%)
Query: 462 GCTALTIACKDGYYEIAVLLLNS-GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
L+ A G + LL+ + + +R G + L + G I LLK+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
++ + V+ A G + LK+L+ D+ + G P+ AV+ + + L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 581 IDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
++ + D RG T L +A++ ++ +V++
Sbjct: 121 A-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 84.0 bits (209), Expect = 3e-19
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Query: 499 LIHAVKGGHRGIVEALLKKY-VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIA 557
L A G V LL + V D + KTA+ + G+ I LL +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ 64
Query: 558 TKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNP 617
G +P+ A +T L+ +++L++ A + D G +H+A++ +V
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124
Query: 618 KNNILLYRPNKAGETP 633
+ + G TP
Sbjct: 125 DLHR----RDARGLTP 136
Score = 75.5 bits (187), Expect = 3e-16
Identities = 35/200 (17%), Positives = 57/200 (28%), Gaps = 55/200 (27%)
Query: 18 LIHAVKGGHRGIVEALLKKY-VDVDIPGKVRK--LSDALNVTDANDQRSTTRNLLDK--N 72
L A G V LL + V D + K L + LL + +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-----MFGSTAIALELLKQGAS 60
Query: 73 KHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA 132
+ + V+ A G + LK+L+ D+ +
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV------------------------ 96
Query: 133 EDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWS 192
D G + A Q+G + V L +D++ D +
Sbjct: 97 --------------------PDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLT 135
Query: 193 PLTYAAREGYTDVCAELLDH 212
PL A + G D+ L H
Sbjct: 136 PLELALQRGAQDLVDILQGH 155
Score = 37.8 bits (89), Expect = 0.003
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D SG S + A + G ++ L++ DV++P L +++ + L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL--PIHLAVQEGHTAVVSFL 120
Query: 69 LDK-NKHKSLKERKTAVYTAVEKGNVPILKLLL 100
+ + H+ T + A+++G ++ +L
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 163 bits (416), Expect = 1e-47
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 3/138 (2%)
Query: 181 ADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
+ + L AA G + LL+ GA+ + G P+ G
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAE 61
Query: 241 LLLDKNADVNAHGNYHISS-LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACR 299
LLL A+ N ++ + AA G+ + + +L + GA+++V D +G P+ A
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEE 120
Query: 300 KGHVEIVDILLKAGANVD 317
GH ++ L A
Sbjct: 121 LGHRDVARYLRAAAGGTR 138
Score = 161 bits (411), Expect = 6e-47
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
A + L AA +G++ VR L+ GA+ NA ++ P+ G V L
Sbjct: 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELL 63
Query: 210 LDHGADLEHRDMGGW-SPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGY 268
L HGA+ D P+ A+ +G DT+ +L A ++ + + A G+
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Query: 269 TEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVD 307
++ L G+ +G +I D
Sbjct: 124 RDVARYLRAAAGGTR------GSNHARIDAAEGPSDIPD 156
Score = 132 bits (336), Expect = 2e-36
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
L A +G VE V LL+AGAN + Y P+ V +G+ V ELLL +
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEP 70
Query: 456 NALDKDGCT-ALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
N D T + A ++G+ + V+L +GA ++++D G + A + GHR + L
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Query: 515 LKKYVDVDIPGKERKTAVYTAVE 537
R A +
Sbjct: 131 RAAAGGTRGSNHARIDAAEGPSD 153
Score = 131 bits (331), Expect = 8e-36
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
++ A L A+ +G + V LL+ A+ NA +Y + G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 270 EIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYS 329
+ LL+ GA+ N D T P+ A R+G ++ + +L +AGA +DV W +P+
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 330 SA 331
+
Sbjct: 118 AE 119
Score = 118 bits (298), Expect = 3e-31
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 6/152 (3%)
Query: 416 LKAGANVDV-AGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGY 474
++ A + L A E V LLE N NA + G + + G
Sbjct: 1 MEPAAGSSMEPS---ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 475 YEIAVLLLNSGAYINIQDRSGDSN-LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
+A LLL GA N D + + + A + G + L + +D+ + V
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116
Query: 534 TAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
A E G+ + + L A +
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148
Score = 110 bits (278), Expect = 1e-28
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWT-PLLVATLGNFTEVVELLLEYKP 453
YG P+ G + ++LL GA + A T P+ A F + + +L
Sbjct: 44 YGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
++ D G + +A + G+ ++A L + + + G I +
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIPD 156
Score = 109 bits (274), Expect = 5e-28
Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 52/205 (25%)
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADI 335
++ A ++ L A +G VE V LL+AGAN + + P+
Sbjct: 1 MEPAAGSSMEP---SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ------- 50
Query: 336 FSEPGLATPLTVGLYAKWGSGK--SFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHL 393
GS + LL G +P
Sbjct: 51 --------------VMMMGSARVAELLL-----------LHGAEPN----------CADP 75
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+ T P+ A R+G ++ + +L +AGA +DV + P+ +A +V L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
Query: 454 NVNALDKDGCTALTIACKDGYYEIA 478
+ A +G +I
Sbjct: 136 GTRGSNHARIDAA-----EGPSDIP 155
Score = 91.0 bits (227), Expect = 1e-21
Identities = 31/230 (13%), Positives = 54/230 (23%), Gaps = 84/230 (36%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
L A G V ALL+ + N ++ +
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANP-------------NAPNSYGR--------- 46
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSY 130
+ + G+ + +LLL + A
Sbjct: 47 -----------RPIQVMM-MGSARVAELLLLHGAEPNCA--------------------- 73
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGT-ALMFAAQKGKLSFVRELVTRGADVNAEDND 189
D T + AA++G L + L GA ++ D
Sbjct: 74 -----------------------DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW 110
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
P+ A G+ DV L + + +G +D
Sbjct: 111 GRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
Score = 84.5 bits (210), Expect = 2e-19
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 4/136 (2%)
Query: 482 LNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNV 541
+ A L A G V ALL+ + + P + + + G+
Sbjct: 1 MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 542 PILKLLLTANPDLEIATKDGDT-PLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHI 600
+ +LLL + A T P+ A + L+ + +L A++ D G + +
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 601 AMRARSKTIVEVFIRN 616
A + +
Sbjct: 118 AEELGHRDVARYLRAA 133
Score = 38.6 bits (91), Expect = 0.001
Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ G + + G + E LL + + L+ ++ T L
Sbjct: 40 APNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADP-ATLTRPVHDAAREGFLDTLVVL 97
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATK 111
+ V A E G+ + + L A +
Sbjct: 98 HRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 163 bits (415), Expect = 2e-47
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+ G L+ AA+ G+ VR L+ GA D SPL AA+ G+ LL G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ R +PL A+ +GH + V +LL ADVNA +++L WA + E+V LL
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 276 VKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+K GA V+ K + T + G+ ++ +IL
Sbjct: 120 IKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL 152
Score = 137 bits (347), Expect = 5e-38
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
L+ A R G + V IL+ GA +PL +A E+LL +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+A K T L +A +G+ I +LL GA +N +D + L A + H+ +VE L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
K DV K KTA +++ GN + ++L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 135 bits (344), Expect = 1e-37
Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
D L AAR G D L+ +GA D G SPL A+ GH T +LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
+A + L AA G+ IV +L+K GA VN D T L WA H E+V++
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVEL 118
Query: 309 LLKAGANVD 317
L+K GA+V
Sbjct: 119 LIKYGADVH 127
Score = 130 bits (331), Expect = 9e-36
Identities = 37/122 (30%), Positives = 59/122 (48%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
D G + L AAQ G S L+ G +A + +PL AA EG+ ++ LL HG
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVA 273
AD+ +DM + L WA+ H + V LL+ ADV+ + ++ + G ++
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 274 LL 275
+L
Sbjct: 151 IL 152
Score = 125 bits (317), Expect = 7e-34
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
GT+PL A + GH ++LL+AG + D TPL +A +VE+LL++ +
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VNA D TAL A + + E+ LL+ GA ++ Q + + ++ G+ + E +
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE-I 151
Query: 515 LK 516
L+
Sbjct: 152 LQ 153
Score = 120 bits (303), Expect = 6e-32
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 1/151 (0%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
LL A + V +L+ D G + L +A + G++ +LL +G +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+ + + L A GH IVE LLK DV+ + TA++ A E + +++LL+
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
D+ +K T ++ N + ++L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 102 bits (258), Expect = 7e-26
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
L+ A+ G D V +L+ A S L AA G+ +L++ G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
+ K TPL A +GH IV++LLK GA+V+ + L+ +
Sbjct: 61 DARTK-VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108
Score = 100 bits (252), Expect = 5e-25
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
D R T L AA +G + V L+ GADVNA+D + L +A + +V L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
+GAD+ + + + G+ D +L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 88.2 bits (220), Expect = 9e-21
Identities = 41/187 (21%), Positives = 63/187 (33%), Gaps = 49/187 (26%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
D L A + G + +L+ +GA D G S L A + GH E LL+ V
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
D + TK TPL A + +++L
Sbjct: 60 RD--------------AR-------------------TKVDRTPLHMAASEGHANIVEVL 86
Query: 581 IDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIR-----NPKNNILLYRPNKAGETP-- 633
+ A + A D T LH A + +VE+ I+ + ++ +T
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF--------CKTAFD 138
Query: 634 YSIDMNN 640
SID N
Sbjct: 139 ISIDNGN 145
Score = 67.8 bits (167), Expect = 1e-13
Identities = 36/200 (18%), Positives = 58/200 (29%), Gaps = 78/200 (39%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
D G S L A + GH E LL+ V D
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA---------------------------- 62
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSY 130
+ K +T ++ A +G+ I+++LL D+
Sbjct: 63 RTKV-----DRTPLHMAASEGHANIVEVLLKHGADVNA---------------------- 95
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
+D TAL +A + V L+ GADV+ +
Sbjct: 96 ----------------------KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 133
Query: 191 WSPLTYAAREGYTDVCAELL 210
+ + G D+ AE+L
Sbjct: 134 KTAFDISIDNGNEDL-AEIL 152
Score = 32.0 bits (74), Expect = 0.29
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
R + + L A GH IVE LLK DV+ ++ AL+ ++ + L
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT--ALHWATEHNHQEVVELL 119
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLL 99
+ + H K KTA +++ GN + ++L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 161 bits (410), Expect = 1e-46
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 3/164 (1%)
Query: 152 DRDDNGGTALMFAAQKGKLSFVRELVTR-GADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ L+ AA+ G + V++L T + + +PL +AA V LL
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
HGAD+ +D GG PL A GH + LL+ A VN + + L AA +G E
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
I LL++ GA ++ G TPL + G +I D+L A
Sbjct: 123 ICKLLLQHGADPTKKNR-DGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 139 bits (353), Expect = 1e-38
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLD-HGADLEHRDMGGWSPLMWASYKGHTDT 238
GA N ++ L AA+ G + +L + + +PL +A+
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 239 VALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWAC 298
V LL ADV+A + L A G+ E+ LLVK GA VNV D + TPL A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAA 116
Query: 299 RKGHVEIVDILLKAGANVD 317
KG EI +LL+ GA+
Sbjct: 117 AKGKYEICKLLLQHGADPT 135
Score = 131 bits (332), Expect = 1e-35
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
D + T L FAA ++S V L+ GADV+A+D PL A G+ +V L
Sbjct: 35 CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYT 269
+ HGA + D+ ++PL A+ KG + LLL AD + L G T
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDT 153
Query: 270 EIVALLVKKGA 280
+I LL A
Sbjct: 154 DIQDLLRGDAA 164
Score = 129 bits (327), Expect = 5e-35
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 2/156 (1%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKA-GANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
S L+ A + G VE V L N TPL A N VVE LL++
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
+V+A DK G L AC G+YE+A LL+ GA +N+ D + L A G I +
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
LL+ D ++ T + + G+ I LL
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160
Score = 120 bits (304), Expect = 6e-32
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 5/168 (2%)
Query: 419 GANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK-PNVNALDKDGCTALTIACKDGYYEI 477
GA + LL A E V+ L + N ++ T L A +
Sbjct: 1 GAMGNSEA---DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 478 AVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVE 537
LL GA ++ +D+ G L +A GH + E L+K V++ + T ++ A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 538 KGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
KG I KLLL D +DG+TPL + + +L A
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 119 bits (301), Expect = 1e-31
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+TPL +A V +V+ LL+ GA+V PL A EV ELL+++
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VN D T L A G YEI LLL GA ++R G++ L VK G I + L
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLL 159
Query: 515 LKK 517
Sbjct: 160 RGD 162
Score = 109 bits (274), Expect = 7e-28
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKN-ADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAK 281
L+ A+ G +TV L + + L +AAG +V L++ GA
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 282 VNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
V+ DK G PL AC GH E+ ++L+K GA V+VA LW + PL+ +A
Sbjct: 68 VHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Score = 95.9 bits (240), Expect = 2e-23
Identities = 48/239 (20%), Positives = 69/239 (28%), Gaps = 81/239 (33%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
+ D L+ A K G V+ L ++N D
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTV--------------QSVNCRDIE----------- 39
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+ T ++ A V +++ LL A+
Sbjct: 40 -------GRQSTPLHFAAGYNRVSVVEYLLQHGADV------------------------ 68
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
+D G L A G LV GA VN D
Sbjct: 69 ----------------------HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
++PL AA +G ++C LL HGAD ++ G +PL G TD LL A
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 63.6 bits (156), Expect = 4e-12
Identities = 35/208 (16%), Positives = 55/208 (26%), Gaps = 82/208 (39%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ + L A +VE LL+ DV + D
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-------------HAKD----------- 72
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVSLCYRT 126
K ++ A G+ + +LL+ A
Sbjct: 73 ---------KGGLVPLHNACSYGHYEVAELLVKHGAVV---------------------- 101
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
+ D T L AA KGK + L+ GAD +
Sbjct: 102 ------------------------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 187 DNDNWSPLTYAAREGYTDVCAELLDHGA 214
+ D +PL ++G TD+ L A
Sbjct: 138 NRDGNTPL-DLVKDGDTDIQDLLRGDAA 164
Score = 32.4 bits (75), Expect = 0.24
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGA 420
G TPL + G +I D+L A
Sbjct: 140 DGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 28.9 bits (66), Expect = 3.3
Identities = 8/44 (18%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 590 VDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
+ D L A +A V+ N TP
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTP 45
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 163 bits (416), Expect = 1e-46
Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 6/171 (3%)
Query: 149 VADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAE 208
+ G + + G ADV ++ +P AAR+
Sbjct: 7 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQA-LS 62
Query: 209 LLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA-HGNYHISSLIWAAGRG 267
L D++ D G + L++ + G V LL + AD++ +++L AAG
Sbjct: 63 QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122
Query: 268 YTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
E+V LV+ GA + V D+ G T L A ++ G + +
Sbjct: 123 RPEVVEALVELGADIEVEDE-RGLTALELAREILKTTPKGNPMQFGRRIGL 172
Score = 161 bits (410), Expect = 9e-46
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 152 DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLD 211
D T AA+K + +L+ DV+A D + + L + A G L +
Sbjct: 40 DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Query: 212 HGADLEHRDM-GGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
GADL+HRDM GG + L A+ + V L++ AD+ +++L A T
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
++ G ++ + ++ + E+ +I+ K G DV
Sbjct: 159 PKGNPMQFGRRIGLEK----VINVLEGQVFEYAEVDEIVEKRGKGKDV 202
Score = 151 bits (383), Expect = 6e-42
Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 16/222 (7%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G + + GH A+V TP A + + LLE +V
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLLE-DRDV 70
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD-RSGDSNLIHAVKGGHRGIVEAL 514
+A+D++G TAL G + LL +GA ++ +D R G + L A +VEAL
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
++ D+++ + TA+ A E + I + L
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR--IGLEK---------VINVL 179
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
E + +I +G V ++ V +
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH 221
Score = 147 bits (374), Expect = 1e-40
Identities = 47/241 (19%), Positives = 74/241 (30%), Gaps = 34/241 (14%)
Query: 82 TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDN-LDSLQ 140
+ G+ P D+ Y T A +L
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADVVSE--------------YETPWWTAARKADEQALS 62
Query: 141 TFLENKRTVAD--DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED-NDNWSPLTYA 197
LE+ D D+NG TAL+F A G VR L GAD++ D + L A
Sbjct: 63 QLLED----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 198 AREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHI 257
A +V L++ GAD+E D G + L A T + + +
Sbjct: 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---V 175
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
+++ Y E+ ++ K+G G K + + A
Sbjct: 176 INVLEGQVFEYAEVDEIVEKRGK---------GKDVEYLVRWKDGGDCEWVKGVHVAEDV 226
Query: 318 V 318
Sbjct: 227 A 227
Score = 142 bits (360), Expect = 1e-38
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 15/207 (7%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
TP A RK + + LL+ +VD T LL + V LL E ++
Sbjct: 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 456 NALD-KDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
+ D + G TAL +A E+ L+ GA I ++D G + L A +
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
++ + G E+ V + +++ G
Sbjct: 164 MQFGRRI---GLEKVINVLEGQVFEYAEVDEIVEKRG--------KGKDVEYLVRWKDGG 212
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIA 601
+ + A+ A D + L A
Sbjct: 213 DCEWVKGVHVAEDVAKDY--EDGLEYA 237
Score = 137 bits (347), Expect = 6e-37
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 22/241 (9%)
Query: 184 NAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
+ + ++G++ AD+ +P A+ K ++ LL
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHV 303
++ DV+A ++L++ AG G + V LL + GA ++ D G T L A
Sbjct: 66 -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124
Query: 304 EIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPK 363
E+V+ L++ GA+++V L LA E T G ++G
Sbjct: 125 EVVEALVELGADIEVEDERGLTALE---LA---REILKTT--PKGNPMQFGR-------- 168
Query: 364 LKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVD 423
+ ++ F ++ + ++ G K + + A
Sbjct: 169 -RIGLEKVINVLEGQVFEYAEVDEIVEKR-GKGKDVEYLVRWKDGGDCEWVKGVHVAEDV 226
Query: 424 V 424
Sbjct: 227 A 227
Score = 129 bits (327), Expect = 3e-34
Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 18/180 (10%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYC-WTPLLVATLGNFTEVVELLLEYK 452
G T L++ G + V +L +AGA++D + T L +A EVVE L+E
Sbjct: 75 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
++ D+ G TAL +A + + G I ++ N++ + + E
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDE 191
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKDGDTPLLKAVK 570
+ K+ + K Y K + A KD + L AV
Sbjct: 192 IVEKR--------GKGKDVEYLVRWKDGGDCEWVKGVHVAE----DVAKDYEDGLEYAVA 239
Score = 117 bits (295), Expect = 8e-30
Identities = 39/294 (13%), Positives = 74/294 (25%), Gaps = 93/294 (31%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
++ A + + LL+ D D+ + D
Sbjct: 42 VSEYETPWWTAARKADEQALSQLLE---DRDV-----------DAVD------------- 74
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSY 130
+ +TA+ G+ ++LL A DL+
Sbjct: 75 -------ENGRTALLFVAGLGSDKCVRLLAEAGADLDH---------------------- 105
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGG-TALMFAAQKGKLSFVRELVTRGADVNAEDND 189
RD GG TAL AA + V LV GAD+ ED
Sbjct: 106 ----------------------RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143
Query: 190 NWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADV 249
+ L A T + G + + ++ + + ++ +
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDEIVEKRGKGK 200
Query: 250 NAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHV 303
+ + + + A+ D L +A + +
Sbjct: 201 DV--------EYLVRWKDGGDCEWVKGVHVAEDVAKDY---EDGLEYAVAESVI 243
Score = 111 bits (280), Expect = 6e-28
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+ +G I KDG+ V A + ++ A + + LL
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL 65
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIA-TKDGDTPLLKAVKTRNL 574
+ DVD + +TA+ G+ ++LL A DL+ + G T L A
Sbjct: 66 ED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124
Query: 575 EAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
E ++ L++ A I D+RG T L +A T +
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 164
Score = 54.5 bits (132), Expect = 2e-08
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
++ + E+ +I+ K G + + + + +
Sbjct: 174 KVINVLEGQVFEYAEVDEIVEKRGKG--------KDVEYLVRWKDGGDCEWVKGVHVAED 225
Query: 456 NALDKDGCTALTIACKDG 473
A KD L A +
Sbjct: 226 VA--KDYEDGLEYAVAES 241
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 159 bits (404), Expect = 4e-45
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 2/221 (0%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
A E+ + +L + T L A TE+VE LL+ V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
N D G + L IA G EI LL GA++N +++G + L +A I LL
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
+ + D TA++ A KGN+ ++ +LL I +G+TPL A +E
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 576 AIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
+ L+ + A I +K T L +A ++ +
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAE 225
Score = 155 bits (392), Expect = 2e-43
Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 43/270 (15%)
Query: 155 DNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGA 214
+ A ++ + D D+ + L +A G+T++ LL G
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 215 DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
+ +D GWSPL A+ G + V LL K A VNA + L +AA + EI +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALAD 334
L++ GA + D Y T + A KG++++V ILL A+ ++ PL+ + +
Sbjct: 125 LLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 335 IFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLS 394
EE K QG +
Sbjct: 184 -----------------------------RVEEAKFLVTQGASIY-----------IENK 203
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDV 424
TPL A KG + ++ L G +
Sbjct: 204 EEKTPLQVA--KGGLGLILKRLAEGEEASM 231
Score = 151 bits (383), Expect = 3e-42
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 1/206 (0%)
Query: 126 TLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
+ + LD L+ + +++A D + TAL +A G V L+ G VN
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 186 EDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+D+ WSPL AA G ++ LL GA + + G +PL +A+ K + +LL+
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEI 305
A+ +A +Y +++ AA +G ++V +L+ A N+ D G TPL AC + VE
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEE 187
Query: 306 VDILLKAGANVDVAGLWAYMPLYSSA 331
L+ GA++ + PL +
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 144 bits (365), Expect = 1e-39
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 2/193 (1%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
T L WAC GH EIV+ LL+ G V+ W+PL +A E+V+ LL +
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VNA++++GCT L A +EIAV+LL GA + +D + + A G+ +V L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 515 LKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNL 574
L +I E T ++ A ++ V K L+T + I K+ TPL A L
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGL 216
Query: 575 EAIQMLIDKKAKI 587
I + + +
Sbjct: 217 GLILKRLAEGEEA 229
Score = 143 bits (361), Expect = 4e-39
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 3/211 (1%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+A G E+ E +L K D+D TAL AC G+ EI LL G +N
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT 549
+D +G S L A G IV+ALL K V+ + T ++ A K I +LL
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 550 ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTI 609
+ + T + +A NL+ + +L+ KA D G+T LH+A
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 610 VEVFIRNPKNNILLYRPNKAGETPYSIDMNN 640
+ + + +Y NK +TP +
Sbjct: 188 AKFLVTQGAS---IYIENKEEKTPLQVAKGG 215
Score = 141 bits (358), Expect = 1e-38
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+D+DD G + L AA G V+ L+ +GA VNA + + +PL YAA + ++ LL
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTE 270
+ GA+ + +D + + A+ KG+ V +LL A N + L A E
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
LV +GA + + +K TPL A KG + ++ L G +
Sbjct: 187 EAKFLVTQGASIYIENK-EEKTPLQVA--KGGLGLILKRLAEGEEASM 231
Score = 136 bits (344), Expect = 1e-36
Identities = 65/264 (24%), Positives = 99/264 (37%), Gaps = 43/264 (16%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
A E+ ++ + D+ T L WAC GH EIV+ LL+ G V+
Sbjct: 11 CNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 320 GLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPT 379
+ PL+ +A A E +K +G
Sbjct: 70 DDAGWSPLHIAASAGX-----------------------------DEIVKALLVKGAHVN 100
Query: 380 FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLG 439
G TPL +A K EI +LL+ GAN D Y T + A
Sbjct: 101 -----------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Query: 440 NFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNL 499
++V +LL YK + N D +G T L +AC + E A L+ GA I I+++ + L
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
Query: 500 IHAVKGGHRGIVEALLKKYVDVDI 523
A G G++ L + + +
Sbjct: 210 QVA--KGGLGLILKRLAEGEEASM 231
Score = 111 bits (280), Expect = 4e-28
Identities = 48/276 (17%), Positives = 89/276 (32%), Gaps = 79/276 (28%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ D+ + L A GH IVE LL+ V V+
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-------------------------- 68
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
K+ + ++ A G I+K LL +
Sbjct: 69 --KDDAG-----WSPLHIAASAGXDEIVKALLVKGAHV---------------------- 99
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN 188
+ + NG T L +AA K + L+ GA+ +A+D+
Sbjct: 100 ----------------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ + + AA +G + LL + A +D G +PL A + + L+ + A
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNV 284
+ + L A G ++ + +G + ++
Sbjct: 198 IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 109 bits (274), Expect = 2e-27
Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 3/187 (1%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
+A E+ +L + D+ + L A GH IVE LL+ V
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
V+ + ++ A G I+K LL + ++G TPL A E ML
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 581 IDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNN 640
++ A A D T +H A + +V + + + + G TP + +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDE 182
Query: 641 QKSILAQ 647
++ A+
Sbjct: 183 ERVEEAK 189
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 155 bits (395), Expect = 5e-45
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
G D ++ + L A+ +G LL +G+D +D GW+PL A GH V
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACR 299
LLL A VN G + S L AA G+ +IV LL+ GA N + +G P+ +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD 118
Query: 300 KGHVEIVDILLKAGAN 315
+ ++ + K ++
Sbjct: 119 ESMKSLLLLPEKNESS 134
Score = 143 bits (363), Expect = 2e-40
Identities = 38/128 (29%), Positives = 56/128 (43%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+ G T L A+ KG + V L+ G+D N +D+ W+PL A G+ V LL H
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
A + SPL A+ GH D V LLL A NA + + + + ++
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Query: 273 ALLVKKGA 280
L K +
Sbjct: 126 LLPEKNES 133
Score = 128 bits (325), Expect = 3e-35
Identities = 38/122 (31%), Positives = 58/122 (47%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G T L A KG + V+ LL+ G++ +V WTPL A +VVELLL++K
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
VN + L A K+G+ +I LLL+ GA N + G + + + ++
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128
Query: 515 LK 516
K
Sbjct: 129 EK 130
Score = 119 bits (300), Expect = 8e-32
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
G D + G + L AS KG +V LL +D N + + L A G+ ++V
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
LL++ A VN +PL A + GHV+IV +LL GA+ + ++ P+ +
Sbjct: 60 ELLLQHKALVNTTGY-QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Score = 113 bits (286), Expect = 6e-30
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D G T L A G L V L+ A VN N SPL AA+ G+ D+ LL +
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA 251
GA ++ G P+ + + + LL +KN +A
Sbjct: 99 GASRNAVNIFGLRPVDYTDDESMKS-LLLLPEKNESSSA 136
Score = 112 bits (284), Expect = 1e-29
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 419 GANV--DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYE 476
G + + G T L +A++ VE LL+ + N D G T L AC G+ +
Sbjct: 1 GIDPFTNHRG---ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57
Query: 477 IAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAV 536
+ LLL A +N DS L A K GH IV+ LL + V
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Query: 537 EKGNVPILKLLL 548
++ +L L
Sbjct: 118 DESMKSLLLLPE 129
Score = 107 bits (271), Expect = 9e-28
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL AC GH+++V++LL+ A V+ G +PL A ++V+LLL Y +
Sbjct: 42 AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
NA++ G + + + +L + +
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 102 bits (256), Expect = 9e-26
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+ + G T L IA G LL +G+ N++D +G + L A GH +VE
Sbjct: 3 DPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 514 LLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRN 573
LL+ V+ G + + ++ A + G+V I+KLLL+ G P+
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121
Query: 574 LEAIQMLIDKKAKITA 589
+ + ++ +
Sbjct: 122 KSLLLLPEKNESSSAS 137
Score = 72.1 bits (178), Expect = 2e-15
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ + L AA+ G + V+ L++ GA NA + P+ Y E + L
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL-LLLP 128
Query: 211 DHGAD 215
+
Sbjct: 129 EKNES 133
Score = 64.4 bits (158), Expect = 1e-12
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
+PL A + GHV+IV +LL GA+ + ++ P+ + ++ L + + +
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Query: 455 VNA 457
+
Sbjct: 135 SAS 137
Score = 36.2 bits (85), Expect = 0.007
Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 82/179 (45%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D +G + L A GH +VE LL+ V N T
Sbjct: 38 VKDHAGWTPLHEACNHGHLKVVELLLQHKALV-------------NTTG----------- 73
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVSLCYRT 126
+ + ++ A + G+V I+KLLL+ A+ +
Sbjct: 74 ---------YQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-------------------- 104
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA 185
+ G + + + S + L + +A
Sbjct: 105 --------------------------VNIFGLRPVDYTDDESMKSLL-LLPEKNESSSA 136
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 155 bits (394), Expect = 1e-43
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 5/171 (2%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
A N L+ AA G+L V++ V D + + + + L A + L
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL 73
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNA-HGNYHISSLIWAAG--R 266
+ GA++ D GW+PL A+ T L+ A + A + ++
Sbjct: 74 ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133
Query: 267 GYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
GY + L + + + L + E + V
Sbjct: 134 GYADCATYLADVEQSMGLMNS-GAVYALWDYSAEFGDE-LSFREGESVTVL 182
Score = 146 bits (370), Expect = 2e-40
Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 47/257 (18%)
Query: 173 VRELVTRGADVNAEDNDNWSPLT---YAAREGYTDVCAELLDHGADLEHRDMGGWSPLMW 229
+R ++ + +PL AA G +V + + D + G + L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 230 ASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVY 289
A + V L+ A+VN+ ++ + L AA T I LV+ GA +
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 290 GTTPLVWA--CRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTV 347
G T R+G+ + L ++ + A L+ +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA--------------- 165
Query: 348 GLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKG 407
+ +E+ E + V ++ T WA G
Sbjct: 166 ---------------EFGDELSFREGESVT-----------VLRRDGPEETDWWWAALHG 199
Query: 408 HVEIVDI-LLKAGANVD 423
V V
Sbjct: 200 QEGYVPRNYFGLFPRVK 216
Score = 144 bits (365), Expect = 1e-39
Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 6/171 (3%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
++ G TAL A S V L+T GA+VN+ D+ W+PL AA T +C L+
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV 107
Query: 211 DHGADLEHRDM-GGWSPLMWAS--YKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRG 267
HGA + + G + +G+ D L D + + + +L +
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AE 166
Query: 268 YTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI-LLKAGANVD 317
+ + ++ + V D T WA G V V
Sbjct: 167 FGDELSFREGESVTVLRRDG-PEETDWWWAALHGQEGYVPRNYFGLFPRVK 216
Score = 135 bits (343), Expect = 1e-36
Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 4/178 (2%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
L+ A G +E+V +K + T L A G +V+ L+ NV
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRS-GDSNLIHA--VKGGHRGIVE 512
N+ D G T L A I + L+ GA I S G + + G+
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140
Query: 513 ALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVK 570
L + + A++ L + + +T A
Sbjct: 141 YLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWWAAL 197
Score = 133 bits (338), Expect = 6e-36
Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 13/236 (5%)
Query: 412 VDILLKAGANV---DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTI 468
+ +L+ + A L LL A L EVV+ ++ + + +++G TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIP-GKE 527
A Y I L+ +GA +N D G + L A I AL++ + +
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 528 RKTAVYTA--VEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKA 585
TA +G L + + L + + +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESV 179
Query: 586 KITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQ 641
+ D +T A + V P+N L+ K + ++
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYV------PRNYFGLFPRVKPQRSKVKHHHHHH 229
Score = 123 bits (312), Expect = 2e-32
Identities = 42/269 (15%), Positives = 71/269 (26%), Gaps = 47/269 (17%)
Query: 239 VALLLDKNADVNAHGNYHIS---SLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLV 295
+ +L K ++ L+ AA G E+V VK+ + ++ G T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59
Query: 296 WACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGS 355
A + IVD L+ AGANV+ + PL+ + A
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA--------------------ASCND 99
Query: 356 GKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWA--CRKGHVEIVD 413
+ G + LS G T R+G+ +
Sbjct: 100 ---------TVICMALVQHGAA----------IFATTLSDGATAFEKCDPYREGYADCAT 140
Query: 414 ILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDG 473
L ++ + L + + + V D T A G
Sbjct: 141 YLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWWAALHG 199
Query: 474 YYEI-AVLLLNSGAYINIQDRSGDSNLIH 501
+ Q + H
Sbjct: 200 QEGYVPRNYFGLFPRVKPQRSKVKHHHHH 228
Score = 118 bits (298), Expect = 2e-30
Identities = 39/163 (23%), Positives = 59/163 (36%), Gaps = 7/163 (4%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G T L A + IVD L+ AGANV+ + WTPL A N T + L+++
Sbjct: 53 EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Query: 455 VNALD-KDGCTALTIA--CKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
+ A DG TA ++GY + A L + + + + L +
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-EL 171
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGN---VPILKLLLTAN 551
+ V V +T + A G VP L
Sbjct: 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214
Score = 105 bits (265), Expect = 4e-26
Identities = 46/270 (17%), Positives = 71/270 (26%), Gaps = 85/270 (31%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ + L+ A G +V+ +K+ D
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-------------------------- 49
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVSLCYRT 126
N+ E TA++ A+ N I+ L+T AN +
Sbjct: 50 --PNE-----EGITALHNAICGANYSIVDFLITAGANVN--------------------- 81
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
D +G T L AA LV GA + A
Sbjct: 82 -------------------------SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116
Query: 187 D-NDNWSPLTYAA--REGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLL 243
+D + REGY D L D + + G L S D ++
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFRE 175
Query: 244 DKNADVNAHGNYHISSLIWAAGRGYTEIVA 273
++ V + WAA G V
Sbjct: 176 GESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Score = 90.8 bits (226), Expect = 8e-21
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 5/141 (3%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGL-YCWTPLLVA--TLGNFTEVVELLLE 450
S+G TPL A I L++ GA + L T + + L +
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144
Query: 451 YKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGI 510
+ ++ ++ AL + E++ + +D +++ A G G
Sbjct: 145 VEQSMGLMNSGAVYALWDYSAEFGDELS-FREGESVTVLRRDGPEETDWWWAALHGQEGY 203
Query: 511 VEA-LLKKYVDVDIPGKERKT 530
V + V + K
Sbjct: 204 VPRNYFGLFPRVKPQRSKVKH 224
Score = 49.6 bits (119), Expect = 8e-07
Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 29/195 (14%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSD---ALNVTDANDQ 61
D S + G + L +A+ G + IV+ L+ +V+ S L+ + +
Sbjct: 46 DPSQP-NEEGITALHNAICGANYSIVDFLITAGANVN-----SPDSHGWTPLHCAASCND 99
Query: 62 RSTTRNLL----DKNKHKSLKERKTAVYTA--VEKGNVPILKLLLTANPDLEIATKTLPR 115
L+ +L + TA +G L + +
Sbjct: 100 TVICMALVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA-- 156
Query: 116 SDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFV-R 174
+ + D L F E + RD T +AA G+ +V R
Sbjct: 157 ---------VYALWDYSAEFGDELS-FREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206
Query: 175 ELVTRGADVNAEDND 189
V + +
Sbjct: 207 NYFGLFPRVKPQRSK 221
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 146 bits (371), Expect = 1e-41
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
NG T L AA+ G L V+ L+ GADVNA+D + +PL AAR G+ +V LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ +D G +PL A+ GH + V LLL+ ADVNA + L AA G+ E+V LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 276 VKKGA 280
++ GA
Sbjct: 121 LEAGA 125
Score = 145 bits (369), Expect = 2e-41
Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ +PL AAR G+ +V LL+ GAD+ +D G +PL A+ GH + V LLL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
VNA + L AA G+ E+V LL++ GA VN DK G TPL A R GH+E+V +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKL 119
Query: 309 LLKAGA 314
LL+AGA
Sbjct: 120 LLEAGA 125
Score = 130 bits (330), Expect = 6e-36
Identities = 53/122 (43%), Positives = 78/122 (63%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
NA DK+G T L +A ++G+ E+ LLL +GA +N +D++G + L A + GH +V+ LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 516 KK 517
+
Sbjct: 122 EA 123
Score = 121 bits (307), Expect = 8e-33
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G +PL A+ GH + V LLL+ ADVNA + L AA G+ E+V LL++ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
N DK G TPL A R GH+E+V +LL+AGA+V+ PL+ +A
Sbjct: 62 NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Score = 115 bits (290), Expect = 1e-30
Identities = 42/97 (43%), Positives = 59/97 (60%)
Query: 151 DDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELL 210
+ +D NG T L AA+ G L V+ L+ GADVNA+D + +PL AAR G+ +V LL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 211 DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+ GAD+ +D G +PL A+ GH + V LLL+ A
Sbjct: 89 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 109 bits (275), Expect = 2e-28
Identities = 44/93 (47%), Positives = 60/93 (64%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE +
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
VNA DK+G T L +A ++G+ E+ LLL +GAY
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 107 bits (271), Expect = 6e-28
Identities = 47/119 (39%), Positives = 74/119 (62%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
TPL +A EVV+LLLE +VNA DK+G T L +A ++G+ E+ LLL +GA +N
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLL 548
+D++G + L A + GH +V+ LL+ DV+ K +T ++ A G++ ++KLLL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 102 bits (256), Expect = 6e-26
Identities = 43/125 (34%), Positives = 76/125 (60%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
+G T L +A ++G+ E+ LLL +GA +N +D++G + L A + GH +V+ LL+ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
V+ K +T ++ A G++ ++KLLL A D+ K+G TPL A + +LE +++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 581 IDKKA 585
++ A
Sbjct: 121 LEAGA 125
Score = 77.8 bits (193), Expect = 2e-17
Identities = 50/197 (25%), Positives = 71/197 (36%), Gaps = 77/197 (39%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
L A + GH +V+ LL+ DV N D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADV-------------NAKD-------------------- 32
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
K +T ++ A G++ ++KLLL A D+
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---------------------------- 64
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
D NG T L AA+ G L V+ L+ GADVNA+D + +PL A
Sbjct: 65 ----------------DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 198 AREGYTDVCAELLDHGA 214
AR G+ +V LL+ GA
Sbjct: 109 ARNGHLEVVKLLLEAGA 125
Score = 67.8 bits (167), Expect = 7e-14
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
+T ++ A G++ ++KLLL A D+ K+G TPL A + +LE +++L++ A +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFIR-----NPKNNILLYRPNKAGETP 633
A DK G T LH+A R +V++ + N K+ G TP
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--------GRTP 104
Score = 49.3 bits (119), Expect = 2e-07
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 560 DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+G TPL A + +LE +++L++ A + A DK G T LH+A R +V++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Score = 37.7 bits (89), Expect = 0.002
Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 77/173 (44%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D++G + L A + GH +V+ LL+ DV+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------------------------- 63
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
K+K+ +T ++ A G++ ++KLLL A D+
Sbjct: 64 --KDKN-----GRTPLHLAARNGHLEVVKLLLEAGADVNAK------------------- 97
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
D NG T L AA+ G L V+ L+ GA
Sbjct: 98 -------------------------DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 148 bits (375), Expect = 1e-41
Identities = 28/179 (15%), Positives = 59/179 (32%), Gaps = 17/179 (9%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN---WSPLTYAAREGYTDVCAELLDH 212
+ + AA G EL +G + + + L E + L++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVA------LLLDKNADVNAHGNYHISSLIWAAGR 266
GAD++ R G + G D + L+K AD+ A + +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 267 GYTEIV-------ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
+ + + + G ++ + DK +G T L + R + ++ ++
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 120 bits (303), Expect = 1e-31
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 41/209 (19%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGN-----FTEVVELLLE 450
+ A G E L + G + + +L L N ++ L+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 451 YKPNVNALDKDGCTALTIACKDGY------YEIAVLLLNSGAYINIQDRSGDSNLIHAVK 504
++ + K+G T + G E+ + L GA I + + +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123
Query: 505 GGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLT-ANPDLEIATKDGDT 563
E + P+ KL+ + + L I K G T
Sbjct: 124 NYFVDENEMI---------------------------PLYKLIFSQSGLQLLIKDKWGLT 156
Query: 564 PLLKAVKTRNLEAIQMLIDKKAKITAVDK 592
L + + A++M+ D K +
Sbjct: 157 ALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 109 bits (275), Expect = 6e-28
Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 43/213 (20%)
Query: 221 MGGWSPLMWASYKGHTDTVALLLDKNADVNAHG---NYHISSLIWAAGRGYTEIVALLVK 277
M + + A+ G + L +K + N L +I L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 278 KGAKVNVGDKVYGTTPLVWACRKGH------VEIVDILLKAGANVDVAGLWAYMPLYSSA 331
KGA + K GTT + G E+ I L+ GA++ + ++
Sbjct: 64 KGADIKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF--- 119
Query: 332 LADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVM 391
+ L + + F + G+
Sbjct: 120 -----------------KNIFNYFVDENEMIPLYKLI--FSQSGLQLLIK---------- 150
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDV 424
+G T L + R + ++ ++
Sbjct: 151 -DKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 94.7 bits (236), Expect = 1e-22
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 20/178 (11%)
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAV----KGGHRGIV 511
NA+ + ++ A G YE + L G + + L + I
Sbjct: 2 NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKIS 58
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGN------VPILKLLLTANPDLEIATKDGDTPL 565
L+ K D+ KE T + + G + K+ L D+ K +
Sbjct: 59 MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118
Query: 566 LKAVKTRNLEA------IQMLIDKK-AKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
K + ++ +++ + ++ DK G T L R + +++
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176
Score = 94.0 bits (234), Expect = 2e-22
Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 45/221 (20%)
Query: 250 NAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNV--GDKVYGTTPLVWACRKGHVEIVD 307
NA Y ++ AA G E L +KG + L + +I
Sbjct: 2 NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59
Query: 308 ILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEE 367
L+ GA++ + + G + E
Sbjct: 60 FLINKGADIKSRTKEGTTLFF--------------------PLFQGGGND---ITGTTEL 96
Query: 368 MKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVD-------ILLKAGA 420
K F +G D T + V+ + I ++G
Sbjct: 97 CKIFLEKGADITAL-----------YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL 145
Query: 421 NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKD 461
+ + + T L ++++ +Y N +
Sbjct: 146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 94.0 bits (234), Expect = 3e-22
Identities = 29/216 (13%), Positives = 54/216 (25%), Gaps = 50/216 (23%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGL 349
+ A G E L + G + + L + E
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKI------ 57
Query: 350 YAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGH- 408
+ FL+ +G D GTT + G
Sbjct: 58 -SM------FLI-----------NKGADIKSR-----------TKEGTTLFFPLFQGGGN 88
Query: 409 -----VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVE-------LLLEYKPNVN 456
E+ I L+ GA++ + F + E + + +
Sbjct: 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148
Query: 457 ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
DK G TAL + ++ + N+++
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 81.3 bits (201), Expect = 6e-18
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 19/157 (12%)
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERK---TAVYTAVEKGNVPILKLLLT 549
S + A G L +K + + + ++ I L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 550 ANPDLEIATKDGDTPLLKAVK------TRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMR 603
D++ TK+G T + T E ++ ++K A ITA+ K V+ +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123
Query: 604 ARSKTIVEVFIRNPKNNILLYRP-------NKAGETP 633
E P ++ + +K G T
Sbjct: 124 NYFVDENE---MIPLYKLIFSQSGLQLLIKDKWGLTA 157
Score = 80.1 bits (198), Expect = 1e-17
Identities = 23/225 (10%), Positives = 48/225 (21%), Gaps = 60/225 (26%)
Query: 12 RSGDSNLIHAVKGGHRGIVEALLKKYVDV-DIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
S + A G L +K + + K L D L + + + L++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 71 K--NKHKSLKERKTAVYTAVEKGN------VPILKLLLTANPDLEIATKTLPRSDSMVSL 122
K + KE T + + G + K+ L D+
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-------------- 109
Query: 123 CYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRE------- 175
+ +
Sbjct: 110 ------------------------------LYKPYKIVVFKNIFNYFVDENEMIPLYKLI 139
Query: 176 LVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD 220
G + +D + L + R + D+ ++
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 28.5 bits (64), Expect = 4.6
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI 42
+ K D+ G + L + ++ + ++
Sbjct: 146 QLLIK-DKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 152 bits (386), Expect = 4e-41
Identities = 47/390 (12%), Positives = 96/390 (24%), Gaps = 56/390 (14%)
Query: 116 SDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQ-KGKLSFVR 174
+ S + +++ FL + L +A +
Sbjct: 27 ENLFQHFISANELSLMTLSYKEAIHIFLPGT---KNMEQVRQLLCLYYAHYNRNAKQLWS 83
Query: 175 ELVTRGADVNAEDNDNWSPLTYAAREGYT---DVCAELLDHGADLEHRDMGGWSPLMWAS 231
+ +G AA G + D LL ++ + A+
Sbjct: 84 DAHKKGIKSEV-------ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136
Query: 232 YKGHTDTVALLLDKNADVNA--HGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGD-KV 288
GH + L + + + AA G+ ++ L + +
Sbjct: 137 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA 196
Query: 289 YGTTPLVWAC-RKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTV 347
WA +GH +++ LL + A + +
Sbjct: 197 ENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV---------------- 240
Query: 348 GLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKG 407
+ + L ++ + K GV V G L R+
Sbjct: 241 ---NPFIARHVNRLKEMHDAFKLSNPDGV--------FDLVTKSECLQGFYMLRNLIRRN 289
Query: 408 HVEIVDIL--------LKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALD 459
++D + +KA A L +A LLL +
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349
Query: 460 KDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
+ I G ++ + L + +
Sbjct: 350 ANN---YYINETGGRLDLRAVALEHHHHHH 376
Score = 143 bits (362), Expect = 8e-38
Identities = 51/400 (12%), Positives = 107/400 (26%), Gaps = 47/400 (11%)
Query: 64 TTRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC 123
T N+ + L+ ++ + + + +L L E LP + +
Sbjct: 5 TIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKN----- 59
Query: 124 YRTLQSYIAEDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGK---LSFVRELVT 178
++ + L K+ +D + AA G L + L+T
Sbjct: 60 MEQVRQLLC---LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT 116
Query: 179 RGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDM--GGWSPLMWASYKGHT 236
V +N+ AA G+ V L + + + A+ GH
Sbjct: 117 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176
Query: 237 DTVALLLDKNA-----DVNAHGNYHISSLIWAA-GRGYTEIVALLVKKGAKVNVGDKVYG 290
+ L + + A Y + WAA GRG+ ++ L+ + +
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYY---AFRWAAVGRGHHNVINFLLDCPVMLAYAEI--- 230
Query: 291 TTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLY 350
G + + N A+ + D+ ++ +
Sbjct: 231 -----HEFEYGEKYVNP-FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284
Query: 351 AKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVE 410
+ + L + L A R G+
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATI-----------PGDANELLRLALRLGNQG 333
Query: 411 IVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLE 450
+LL + + + + G ++ + LE
Sbjct: 334 ACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVALE 370
Score = 138 bits (348), Expect = 7e-36
Identities = 46/359 (12%), Positives = 97/359 (27%), Gaps = 51/359 (14%)
Query: 172 FVRELVTRGADVNAEDNDNWSPLTYAARE-GYTDVCAELLDHGADLEHRDMGGWSPLMWA 230
+ + ++ E L YA + ++ G ++ + +
Sbjct: 49 AIHIFLPGTKNM--EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIK---SEVICFVAAITG 103
Query: 231 SYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDK-VY 289
DT+ LLL + V + + AA G+ ++ L + +
Sbjct: 104 C-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 162
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGL 349
A GH+ +++ L + A I +E
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATA--------------MIQAENY--YAF---R 203
Query: 350 YAKWGSG----KSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACR 405
+A G G +FLL + + + V L +
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263
Query: 406 KGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL--------LEYKPNVNA 457
G ++V L + L N +++ + ++
Sbjct: 264 DGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 314
Query: 458 LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
+ D L +A + G LLL+ + + + +N GG + L+
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLRAVALE 370
Score = 117 bits (294), Expect = 1e-28
Identities = 36/254 (14%), Positives = 76/254 (29%), Gaps = 32/254 (12%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYC--WTPLLVATLGNFTEVVELLLEYK 452
A GH+ +++ L + +A + + +A V+ L E
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186
Query: 453 PNVNA--LDKDGCTALTIAC-KDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRG 509
P + + A A G++ + LL+ + + H + G +
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI-------HEFEYGEKY 239
Query: 510 IVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL-----KLLLTANPDLEIATKDGDTP 564
+ + + + KE A + G ++ L + D
Sbjct: 240 VNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVTKSECLQGFYM---LRNLIRRNDEV 292
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNIL-- 622
LL ++ L +I I A + + +L +A+R ++ + + P L
Sbjct: 293 LLDDIR--FLLSIP-GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349
Query: 623 ---LYRPNKAGETP 633
Y G
Sbjct: 350 ANNYYINETGGRLD 363
Score = 113 bits (283), Expect = 3e-27
Identities = 50/340 (14%), Positives = 99/340 (29%), Gaps = 63/340 (18%)
Query: 16 SNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHK 75
+N + + ++ + L +++ +VR+L + L + HK
Sbjct: 36 ANELSLMTLSYKEAIHIFLPGTKNME---QVRQLLCL-----YYAHYNRNAKQLWSDAHK 87
Query: 76 SLKERKTAVYTAVEKGN---VPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIA 132
+ + + A G + L LLLT++ +++ ++ + +A
Sbjct: 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-----ENYQAF-------RLA 135
Query: 133 EDN--LDSLQTFLENKRTV-ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAED-- 187
+N L L E T A AA+ G L + L
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195
Query: 188 -NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMG----------------------GW 224
+ ++ A G+ +V LLD L + ++
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255
Query: 225 SPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL-----VKKG 279
++ G D V G Y + +LI + + L +K
Sbjct: 256 DAFKLSNPDGVFDLV------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 309
Query: 280 AKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
A L A R G+ +LL + + +
Sbjct: 310 APTATIPG-DANELLRLALRLGNQGACALLLSIPSVLALT 348
Score = 106 bits (265), Expect = 7e-25
Identities = 37/398 (9%), Positives = 93/398 (23%), Gaps = 84/398 (21%)
Query: 233 KGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTT 292
+ + + + L ++ + L+ Y L K + +V
Sbjct: 44 LSYKEAIHIFLPGTKNME-----QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 98
Query: 293 PLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL---ADIFSEPGLATPLTVGL 349
+ C ++ + +LL + V V Y +A +
Sbjct: 99 AAITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV-------------- 143
Query: 350 YAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHV 409
L ++ M + A GH+
Sbjct: 144 -LNR------LC-----------ELAPTE---------IMAMIQAENYHAFRLAAENGHL 176
Query: 410 EIVDILLKAGANV---DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTAL 466
+++ L + + + A V+ LL+ + A
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-------AE 229
Query: 467 TIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGK 526
+ G + + + + G +V
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLK----EMHDAFKLSNPDGVFDLVTKS---------ECL 276
Query: 527 ERKTAVYTAVEKGNVPILKLL--------LTANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578
+ + + + + +L + + A D + L A++ N A
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336
Query: 579 MLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
+L+ + + +I + V + +
Sbjct: 337 LLLSIPSVLALTKANN---YYINETGGRLDLRAVALEH 371
Score = 92.7 bits (230), Expect = 2e-20
Identities = 33/257 (12%), Positives = 67/257 (26%), Gaps = 18/257 (7%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
A + GH ++ L + + + A + N L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182
Query: 69 LDKNKHKSLKERK-----TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLC 123
+ ++ + + AV +G+ ++ LL L A
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242
Query: 124 YRTLQSYIAEDNLDSLQTFLENKRT--VADDRDDNGGTALMFAAQKGKLSFVREL----- 176
+ ++ D+ + + V G L ++ + ++
Sbjct: 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 302
Query: 177 ---VTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYK 233
+ A D L A R G CA LL + L +
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNY---YINETG 359
Query: 234 GHTDTVALLLDKNADVN 250
G D A+ L+ + +
Sbjct: 360 GRLDLRAVALEHHHHHH 376
Score = 85.0 bits (210), Expect = 6e-18
Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 11/224 (4%)
Query: 383 SSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFT 442
+L+ + L + E + I L N++ LL ++
Sbjct: 22 PWILWENLFQHFISANELSLM-TLSYKEAIHIFLPGTKNMEQV-----RQLLCLYYAHYN 75
Query: 443 EVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHA 502
+ L + C I + LLL S + + A
Sbjct: 76 RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 135
Query: 503 VKGGHRGIVEALLKKYVDVDIPGKERK--TAVYTAVEKGNVPILKLLLTANPDLEIATKD 560
+ GH ++ L + + + + A A E G++ +L L P A
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195
Query: 561 GD---TPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
+ AV + I L+D + +
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 143 bits (363), Expect = 1e-40
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 185 AEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
+ +A + G D + + G D+ GG PL +A+ G + + LL
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 245 KNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVE 304
K AD+NA +HI+ L+ A G+ V LL+ KGA V G T +
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP-DGLTAFEATDNQAIKA 120
Query: 305 IV 306
++
Sbjct: 121 LL 122
Score = 139 bits (354), Expect = 2e-39
Identities = 36/117 (30%), Positives = 53/117 (45%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
M+A + G L V++ V +G DVN PL YAA G ++ LL GAD
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
+ D +PL+ A Y+GH V LLL K AD G +++ + ++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 126 bits (319), Expect = 1e-34
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
MWA G D V + K DVN L +AA G EI+ L+ KGA +
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
N DK + TPL+ A +GHV V +LL GA+ V G ++
Sbjct: 67 NAPDK-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Score = 124 bits (313), Expect = 9e-34
Identities = 28/119 (23%), Positives = 49/119 (41%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
S +WA + G ++ V + G +V+ PL A E++E LL
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVE 512
++NA DK T L A +G+ LLL+ GA ++ G + + +++
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 105 bits (266), Expect = 2e-27
Identities = 32/118 (27%), Positives = 47/118 (39%)
Query: 428 YCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
C + A + V+ + +VN + G L A G EI LL GA
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILK 545
IN D+ + L+ AV GH V+ LL K D + G + TA + +L+
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 105 bits (265), Expect = 3e-27
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+ G L +AA G+L + L+ +GAD+NA D + +PL A EG+ LL
Sbjct: 36 TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK 95
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTV 239
GAD + G + + +
Sbjct: 96 GADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 90.5 bits (226), Expect = 7e-22
Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 33/155 (21%)
Query: 457 ALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK 516
L A K+G + + G +N G L +A G I+E LL
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 517 KYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEA 576
K D+ K TPLL AV ++
Sbjct: 62 KGADI---------------------------------NAPDKHHITPLLSAVYEGHVSC 88
Query: 577 IQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVE 611
+++L+ K A T G T K +++
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 83.2 bits (207), Expect = 3e-19
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDI 308
+ + + +WA G + V V KG VN + G PL +A G +EI++
Sbjct: 3 LGSMCD---KEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEF 58
Query: 309 LLKAGANVDVAGLWAYMPLYSSA 331
LL GA+++ PL S+
Sbjct: 59 LLLKGADINAPDKHHITPLLSAV 81
Score = 70.9 bits (175), Expect = 5e-15
Identities = 29/192 (15%), Positives = 53/192 (27%), Gaps = 77/192 (40%)
Query: 14 GDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNK 73
D + A+K G V+ + K DV N T
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDV-------------NRTL---------------- 37
Query: 74 HKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAE 133
+ + ++ A + G + IL+ LL D+
Sbjct: 38 ----EGGRKPLHYAADCGQLEILEFLLLKGADINA------------------------- 68
Query: 134 DNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSP 193
D + T L+ A +G +S V+ L+++GAD + D +
Sbjct: 69 -------------------PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109
Query: 194 LTYAAREGYTDV 205
+ +
Sbjct: 110 FEATDNQAIKAL 121
Score = 64.0 bits (157), Expect = 2e-12
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 530 TAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITA 589
A++ G++ +K + D+ + G PL A LE ++ L+ K A I A
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 590 VDKRGDTVLHIAMRARSKTIVEVFIRN 616
DK T L A+ + V++ +
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSK 95
Score = 48.9 bits (118), Expect = 2e-07
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 559 KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN 616
D + A+K +L+ ++ + K + + G LH A I+E +
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Score = 30.1 bits (69), Expect = 0.97
Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 77/166 (46%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ G L +A G I+E LL K D++
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-------------------------- 68
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQ 128
+KH T + +AV +G+V +KLLL+ D +
Sbjct: 69 --PDKH-----HITPLLSAVYEGHVSCVKLLLSKGADKTV-------------------- 101
Query: 129 SYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVR 174
+ +G TA + + ++
Sbjct: 102 ------------------------KGPDGLTAFEATDNQAIKALLQ 123
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 142 bits (361), Expect = 6e-39
Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)
Query: 132 AEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADV-----NAE 186
E+++ +L L+ + R G TAL AA L L+ ++ +E
Sbjct: 12 KENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE 71
Query: 187 DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRD-------------MGGWSPLMWASYK 233
+ + L A ++ LL GA + R G PL +A+
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 234 GHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVA----LLVKKGAKVNVGDKV- 288
G + V LL++ AD+ A + + L + LL+ ++
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191
Query: 289 ----YGTTPLVWACRKGHVEIVDILLKAGANVD 317
G TP A +G++ + L++ ++
Sbjct: 192 VPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224
Score = 141 bits (359), Expect = 8e-39
Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 29/229 (12%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKA-GANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP 453
+PL+ A ++ V+ + LLK G V G T L +A L + E +L+E P
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 454 NV-----NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN---------- 498
+ + +G TAL IA + + LL GA ++ + +
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 499 ---LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGN----VPILKLLLT-- 549
L A G IV L++ D+ T ++ + + N + LLL+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 550 ----ANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRG 594
+ G TP A N+ Q L+ K+ I A
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 141 bits (357), Expect = 2e-38
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 24/184 (13%)
Query: 157 GGTALMFAAQKGKLSFVRE-LVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+ L+ AA++ + + + L G +V+ + L AA + L++ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 216 LEH-----RDMGGWSPLMWASYKGHTDTVALLLDKNADVNA-------------HGNYHI 257
L G + L A + + V LL + A V+A Y
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 258 SSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIV----DILLKAG 313
L +AA G EIV LL++ GA + D G T L + + ++LL
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 314 ANVD 317
Sbjct: 182 GGDH 185
Score = 126 bits (320), Expect = 2e-33
Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 40/250 (16%)
Query: 260 LIWAAGRGYTEIVA-LLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDV 318
L+ AA + ++ LL +G +V+ G T L A ++E +L++A +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 319 AGLWAYMPLYSSALADIFSEPGLATPLTVGLYA-KWGSGKSFLLPKLKEEMKHFERQGVD 377
+ + + T L A + ++ +G
Sbjct: 66 EPMTS---------ELYEGQ----TAL---HIAVINQN---------VNLVRALLARGAS 100
Query: 378 P--TFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLV 435
T S + + YG PL +A G EIV +L++ GA++ T L +
Sbjct: 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Query: 436 ATLGNFTEVV----ELLLEYKPNVNA------LDKDGCTALTIACKDGYYEIAVLLLNSG 485
L LLL Y + + G T +A +G + L+
Sbjct: 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220
Query: 486 AYINIQDRSG 495
+I
Sbjct: 221 KHIAAAHHHH 230
Score = 120 bits (302), Expect = 6e-31
Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 62/233 (26%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+TA++ A N+ +L+ A P+L
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPM-------------------------- 68
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN------- 190
G TAL A ++ VR L+ RGA V+A +
Sbjct: 69 -------------TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 191 ------WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA---- 240
PL++AA G ++ L++HGAD+ +D G + L + +
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Query: 241 LLLDKNADVNAHG------NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDK 287
LLL + + N ++ A G + L++K +
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Score = 117 bits (295), Expect = 6e-30
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 29/213 (13%)
Query: 431 TPLLVATL-GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYI- 488
+PLL+A + + +LL V+ G TAL IA E A++L+ + +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 489 ----NIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI-------------PGKERKTA 531
+ G + L AV + +V ALL + V +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 532 VYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE----AIQMLIDKKAKI 587
+ A G+ I++LL+ D+ G+T L + N +L+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Query: 588 ------TAVDKRGDTVLHIAMRARSKTIVEVFI 614
+ +G T +A + + + +
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Score = 116 bits (293), Expect = 9e-30
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 18/159 (11%)
Query: 192 SPLTYAAREGYTDVCAELL-DHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADV- 249
SPL AA+E ++LL G ++ R G + L A+ + + +L++ ++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 250 ----NAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDK------------VYGTTP 293
+ ++L A +V L+ +GA V+ YG P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 294 LVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSAL 332
L +A G EIV +L++ GA++ L+ L
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Score = 107 bits (270), Expect = 1e-26
Identities = 42/260 (16%), Positives = 76/260 (29%), Gaps = 73/260 (28%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+R G++ L A + L++ ++ + +
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELV--------FEPMTSEL----------- 72
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLT--ANPDLEIATKTLPRSDSMVSLCYRT 126
E +TA++ AV NV +++ LL A+
Sbjct: 73 ---------YEGQTALHIAVINQNVNLVRALLARGASVS--------------------- 102
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
A N G L FAA G VR L+ GAD+ A+
Sbjct: 103 -----ARATGSVFHYRPHNL-------IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ 150
Query: 187 DNDNWSPLTYAAREGYTDVCAE----LLDHGADLEHRDMG------GWSPLMWASYKGHT 236
D+ + L + + LL + + + G +P A +G+
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210
Query: 237 DTVALLLDKNADVNAHGNYH 256
L+ K + A ++H
Sbjct: 211 VMFQHLMQKRKHIAAAHHHH 230
Score = 88.4 bits (220), Expect = 5e-20
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 221 MGGWSPLMWASYKGHTDTVA-LLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKG 279
M SPL+ A+ + ++ LL + +V+ G ++L AA E +L++
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 280 AKVNVGDK----VYGTTPLVWACRKGHVEIVDILLKAGANVD 317
++ G T L A +V +V LL GA+V
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS 102
Score = 43.7 bits (104), Expect = 8e-05
Identities = 22/184 (11%), Positives = 46/184 (25%), Gaps = 67/184 (36%)
Query: 7 SSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTR 66
G+ L A G IV L++ D+
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA------------------------ 149
Query: 67 NLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRT 126
++ T ++ + + N Y
Sbjct: 150 ----QDSLG-----NTVLHILILQPNKTF------------------------ACQMYNL 176
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
L SY D+L +++ ++ G T A +G + + L+ + + A
Sbjct: 177 LLSYDGGDHL----------KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226
Query: 187 DNDN 190
+ +
Sbjct: 227 HHHH 230
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 137 bits (348), Expect = 2e-38
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Query: 179 RGADVNAED-NDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTD 237
RG+ + +D L AAR G D L+ +GAD+ +D G +PL A+ GH +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 238 TVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWA 297
V +LL ADVNA + L AA G+ EI +L+K GA VN DK +G T +
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK-FGKTAFDIS 120
Query: 298 CRKGHVEIVDILLK 311
G+ ++ +IL K
Sbjct: 121 IGNGNEDLAEILQK 134
Score = 127 bits (323), Expect = 6e-35
Identities = 42/122 (34%), Positives = 67/122 (54%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
+ G L+ AA+ G+ VR L+ GADVNA+D +PL A G+ ++ LL +GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+ D G++PL A++ GH + +LL ADVNA + ++ + G G ++ +L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 276 VK 277
K
Sbjct: 133 QK 134
Score = 122 bits (310), Expect = 4e-33
Identities = 47/129 (36%), Positives = 68/129 (52%)
Query: 388 VLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVEL 447
H S L+ A R G + V IL+ GA+V+ Y TPL +AT E+VE+
Sbjct: 6 HHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV 65
Query: 448 LLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH 507
LL+ +VNA+D G T L +A G+ EIA +LL GA +N QD+ G + ++ G+
Sbjct: 66 LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
Query: 508 RGIVEALLK 516
+ E L K
Sbjct: 126 EDLAEILQK 134
Score = 112 bits (282), Expect = 3e-29
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 413 DILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKD 472
G+++ LL A + V +L+ +VNA D+ G T L +A
Sbjct: 5 HHHHHHGSDL-------GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 473 GYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAV 532
G+ EI +LL +GA +N D G + L A GH I E LLK DV+ K KTA
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 533 YTAVEKGNVPILKLLL 548
++ GN + ++L
Sbjct: 118 DISIGNGNEDLAEILQ 133
Score = 111 bits (280), Expect = 5e-29
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 209 LLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGY 268
HG+D L+ A+ G D V +L+ ADVNA Y ++ L A G+
Sbjct: 7 HHHHGSD-------LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 269 TEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVD 317
EIV +L+K GA VN D G TPL A GH+EI ++LLK GA+V+
Sbjct: 60 LEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Score = 103 bits (260), Expect = 3e-26
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D+ G T L A G L V L+ GADVNA D ++PL AA G+ ++ LL H
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN 246
GAD+ +D G + + G+ D +L N
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 87.4 bits (218), Expect = 1e-20
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 485 GAYINIQDRSGDSN--LIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVP 542
G++ + D L+ A + G V L+ DV+ + T +Y A G++
Sbjct: 3 GSHHHHHH-GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 543 ILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAM 602
I+++LL D+ G TPL A +LE ++L+ A + A DK G T I++
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 603 RARSKTIVEVFI 614
++ + E+
Sbjct: 122 GNGNEDLAEILQ 133
Score = 78.6 bits (195), Expect = 1e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 245 KNADVN-AHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHV 303
+ + + HG+ L+ AA G + V +L+ GA VN D+ YG TPL A GH+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHGHL 60
Query: 304 EIVDILLKAGANVDVAGLWAYMPLYSSA 331
EIV++LLK GA+V+ + PL+ +A
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAA 88
Score = 65.9 bits (162), Expect = 4e-13
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 525 GKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKK 584
G + + A G +++L+ D+ + G TPL A +LE +++L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 585 AKITAVDKRGDTVLHIAMRARSKTIVEVFIR-----NPKNNILLYRPNKAGETP 633
A + AVD G T LH+A I EV ++ N ++ G+T
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF--------GKTA 116
Score = 65.1 bits (160), Expect = 7e-13
Identities = 38/193 (19%), Positives = 55/193 (28%), Gaps = 78/193 (40%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
L+ A + G V L+ DV N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-------------NAKD-------------------- 44
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+ T +Y A G++ I+++LL D+
Sbjct: 45 EYGLTPLYLATAHGHLEIVEVLLKNGADVNA----------------------------- 75
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYA 197
D G T L AA G L L+ GADVNA+D + +
Sbjct: 76 ---------------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 198 AREGYTDVCAELL 210
G D+ AE+L
Sbjct: 121 IGNGNEDL-AEIL 132
Score = 65.1 bits (160), Expect = 7e-13
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
G TPL A GH+EI ++LLK GA+V+ + T ++ ++ E+L +
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 32.7 bits (76), Expect = 0.12
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D G + L A GH IVE LLK DV+ + L++ L
Sbjct: 42 AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF--TPLHLAAFIGHLEIAEVL 99
Query: 69 LDK--NKHKSLKERKTAVYTAVEKGNVPILKLLL 100
L + + K KTA ++ GN + ++L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 139 bits (352), Expect = 1e-37
Identities = 51/248 (20%), Positives = 79/248 (31%), Gaps = 54/248 (21%)
Query: 125 RTLQSYIAEDNLDSLQTFLE----NKRTVADD---RDDNGGTALMFAA---QKGKLSFVR 174
L S ++ + L LE N + + D G T LM A Q G + +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 175 ELVTRG-----------ADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMG- 222
L+ A E S L A + L+++GAD+ R G
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 223 ------------GWSPLMWASYKGHTDTVALLLDK---NADVNAHGNY-----HISS--- 259
G PL A+ D V LL+ A + A + H
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183
Query: 260 --------LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLK 311
L+ G ++ A L + + G TPL A ++G +EI +L+
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH-QGLTPLKLAAKEGKIEIFRHILQ 242
Query: 312 AGANVDVA 319
+ A
Sbjct: 243 REFSGAAA 250
Score = 111 bits (279), Expect = 1e-27
Identities = 38/232 (16%), Positives = 71/232 (30%), Gaps = 47/232 (20%)
Query: 394 SYGTTPLVWA---CRKGHVEIVDILLKAGANVDVAGL-----------YCWTPLLVATLG 439
S G T L+ A + G + LL+ + + L +A
Sbjct: 41 STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK 100
Query: 440 NFTEVVELLLEYKPNVNALD-------------KDGCTALTIACKDGYYEIAVLLLNSG- 485
+ V+LL+E +V+ G L++A +++ LL +
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160
Query: 486 --AYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPI 543
A + D G++ L V +A+ + G + +
Sbjct: 161 QPASLEATDSLGNTVLHALVMIAD-----------------NSPENSALVIHMYDGLLQM 203
Query: 544 LKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGD 595
L EI+ G TPL A K +E + ++ ++ A
Sbjct: 204 GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 109 bits (274), Expect = 5e-27
Identities = 36/263 (13%), Positives = 72/263 (27%), Gaps = 55/263 (20%)
Query: 395 YGTTPLVWACRKGHVEIVDILLK--------AGANVDVAGLYCWTPLLVATL---GNFTE 443
+ L +G E + LL+ + G T L+ A L
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
Query: 444 VVELLLEYKP-----------NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
+ LL+ G +AL IA + + LL+ +GA ++++
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 493 RSGDSN-------------LIHAVKGGHRGIVEALLKKYV---DVDIPGKERKTAVYTAV 536
L A +V LL+ ++ T ++ V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 537 EKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDT 596
+ ++ L+ + L+ L + +G T
Sbjct: 181 MIAD-----------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Query: 597 VLHIAMRARSKTIVEVFIRNPKN 619
L +A + I ++ +
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFS 246
Score = 103 bits (259), Expect = 5e-25
Identities = 44/309 (14%), Positives = 73/309 (23%), Gaps = 77/309 (24%)
Query: 193 PLTYAAREGYTDVCAELLDH--------GADLEHRDMGGWSPLMWA---SYKGHTDTVAL 241
L G + LL++ G + LM A G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 242 LLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKG 301
LL + D A+ G + L A K
Sbjct: 65 LLQIDKDSGN----------------------PKPLVNAQCTDEFY-QGHSALHIAIEKR 101
Query: 302 HVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSF-L 360
++ V +L++ GA+V + + F E PL++ A
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQK-HQGTCFYFGE----LPLSLA--ACTKQWDVVTY 154
Query: 361 LPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGA 420
L + + E S G T L
Sbjct: 155 LLENPHQPASLEATD------------------SLGNTVLHALVMIADNS---------- 186
Query: 421 NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVL 480
+ L++ ++ L + G T L +A K+G EI
Sbjct: 187 -------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239
Query: 481 LLNSGAYIN 489
+L
Sbjct: 240 ILQREFSGA 248
Score = 101 bits (253), Expect = 4e-24
Identities = 45/284 (15%), Positives = 78/284 (27%), Gaps = 52/284 (18%)
Query: 255 YHISSLIWAAGRGYTEIVALLVKK--------GAKVNVGDKVYGTTPLVWA---CRKGHV 303
+ L RG E + L++ G T L+ A + G
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS-TGKTCLMKAVLNLQDGVN 59
Query: 304 EIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPK 363
+ LL+ + +A G + L + + S
Sbjct: 60 ACIMPLLQIDKDSG------NPKPLVNAQCTDEFYQGH-SALHIA--IEKRS-------- 102
Query: 364 LKEEMKHFERQGVDPTFTFSSLLFVLVMHLS--YGTTPLVWACRKGHVEIVDILLKAG-- 419
+ +K G D F +G PL A ++V LL+
Sbjct: 103 -LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161
Query: 420 -ANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIA 478
A+++ T L + A + +AL I DG ++
Sbjct: 162 PASLEATDSLGNTVLHALV-----------------MIADNSPENSALVIHMYDGLLQMG 204
Query: 479 VLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVD 522
L + I + G + L A K G I +L++
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 77.5 bits (191), Expect = 4e-16
Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 46/231 (19%)
Query: 9 KRDRSGDSNLIHAV---KGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTT 65
+G + L+ AV + G + LL+ D P
Sbjct: 38 TEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP---------------------- 75
Query: 66 RNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCY- 124
+ L++ + +A++ A+EK ++ +KLL+ D+ + + Y
Sbjct: 76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135
Query: 125 -RTLQSYIAEDN-LDSLQTFLENKRTVAD------------------DRDDNGGTALMFA 164
S A D + LEN A + +AL+
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195
Query: 165 AQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
G L L ++ +PL AA+EG ++ +L
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 57.5 bits (139), Expect = 2e-09
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 35/171 (20%)
Query: 498 NLIHAVKGGHRGIVEALLK------KYV--DVDIPGKERKTAVYTAV---EKGNVPILKL 546
L V G + LL+ KY+ G KT + AV + G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 547 LLTANPDLEIAT-----------KDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVD---- 591
LL + D G + L A++ R+L+ +++L++ A +
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124
Query: 592 ---------KRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETP 633
G+ L +A + +V + NP L + G T
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Score = 51.3 bits (123), Expect = 3e-07
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 40/196 (20%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
G S L A++ V+ L++ DV +
Sbjct: 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR--------------------ACGRF 124
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLL-----TANPD---------LEIATKTLP 114
K++ + + A ++ LL A+ + L
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Query: 115 RSDSMVSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVR 174
S +L D L + L + + + G T L AA++GK+ R
Sbjct: 185 NSPENSALVIH------MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238
Query: 175 ELVTRGADVNAEDNDN 190
++ R A + +
Sbjct: 239 HILQREFSGAAAHHHH 254
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 126 bits (319), Expect = 1e-34
Identities = 41/115 (35%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTV 239
G D +PL AA+ G+ + +LL GAD+ R G +PL A+ GH + V
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 240 ALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPL 294
LLL K ADVNA + A G+ EIV LL KGA VN +
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW-GSSHHH 112
Score = 123 bits (311), Expect = 2e-33
Identities = 40/106 (37%), Positives = 55/106 (51%)
Query: 150 ADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAEL 209
+G T L AA+ G V++L+++GADVNA D +PL AA+ G+ ++ L
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 210 LDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNY 255
L GAD+ R G +P A GH + V LL K ADVNA
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Score = 120 bits (303), Expect = 2e-32
Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 213 GADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIV 272
G +D G +PL A+ GH + V LL K ADVNA + L AA G+ EIV
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 273 ALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLY 328
LL+ KGA VN K G TP A + GH EIV +L GA+V+ + +
Sbjct: 59 KLLLAKGADVNARSK-DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 114 bits (288), Expect = 2e-30
Identities = 41/107 (38%), Positives = 55/107 (51%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G TPL A + GH E V LL GA+V+ TPL +A E+V+LLL +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 455 VNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIH 501
VNA KDG T +A K+G++EI LL GA +N + + H
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 97.1 bits (243), Expect = 3e-24
Identities = 38/104 (36%), Positives = 51/104 (49%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
TPL A E V+ LL +VNA KDG T L +A K+G+ EI LLL GA +N
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVY 533
+ + G++ A K GH IV+ L K DV+ +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 91.3 bits (228), Expect = 3e-22
Identities = 36/107 (33%), Positives = 53/107 (49%)
Query: 459 DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKY 518
KDG T L A K+G+ E LL+ GA +N + + G++ L A K GH IV+ LL K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 519 VDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPL 565
DV+ K+ T + A + G+ I+KLL D+ +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 88.2 bits (220), Expect = 4e-21
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
R +G T L AA+ G V+ L+ +GADVNA D +P A + G+ ++ L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Query: 213 GADLEHRDMGGWSPL 227
GAD+ R G
Sbjct: 98 GADVNARSWGSSHHH 112
Score = 86.7 bits (216), Expect = 1e-20
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 485 GAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPIL 544
G + G++ L +A K GH V+ LL K DV+ K+ T ++ A + G+ I+
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLH 599
KLLL D+ +KDG+TP A K + E +++L K A + A H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 76.6 bits (190), Expect = 4e-17
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L AA G+ E V L+ KGA VN K G TPL A + GH EIV +LL GA+V+
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 320 GLWAYMPLYSSA 331
P + +
Sbjct: 72 SKDGNTPEHLAK 83
Score = 68.9 bits (170), Expect = 2e-14
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 522 DIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581
K+ T ++ A + G+ +K LL+ D+ +KDG+TPL A K + E +++L+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 582 DKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRN--PKNNILLYRPNKAGETP 633
K A + A K G+T H+A + IV++ N +
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN-----ARSWGSSHH 111
Score = 57.0 bits (139), Expect = 3e-10
Identities = 35/186 (18%), Positives = 55/186 (29%), Gaps = 77/186 (41%)
Query: 11 DRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLD 70
+ G++ L +A K GH V+ LL K DV+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA---------------------------- 37
Query: 71 KNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSY 130
++K T ++ A + G+ I+KLLL D+
Sbjct: 38 RSKD-----GNTPLHLAAKNGHAEIVKLLLAKGADVNA---------------------- 70
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
R +G T A + G V+ L +GADVNA +
Sbjct: 71 ----------------------RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Query: 191 WSPLTY 196
+
Sbjct: 109 SHHHHH 114
Score = 28.5 bits (65), Expect = 2.6
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 33/103 (32%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
R + G++ L A K GH IV+ LL K DV+
Sbjct: 37 ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-------------------------- 70
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATK 111
++K T + A + G+ I+KLL D+ +
Sbjct: 71 --RSKD-----GNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 117 bits (296), Expect = 8e-32
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKV 282
G +PL A+ GH + V LLL+ ADVNA + L AA G+ E+V LL++ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 283 NVGDKVYGTTPLVWACRKGHVEIVDILLKAGA 314
N DK G TPL A R GH+E+V +LL+AGA
Sbjct: 62 NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 114 bits (288), Expect = 1e-30
Identities = 41/92 (44%), Positives = 56/92 (60%)
Query: 156 NGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGAD 215
NG T L AA+ G L V+ L+ GADVNA+D + +PL AAR G+ +V LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 216 LEHRDMGGWSPLMWASYKGHTDTVALLLDKNA 247
+ +D G +PL A+ GH + V LLL+ A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 108 bits (273), Expect = 1e-28
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
NA DK+G T L +A ++G+ E+ LLL +GAY
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 107 bits (271), Expect = 2e-28
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 189 DNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
+ +PL AAR G+ +V LL+ GAD+ +D G +PL A+ GH + V LLL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 249 VNAHGNYHISSLIWAAGRGYTEIVALLVKKGA 280
VNA + L AA G+ E+V LL++ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 91.6 bits (229), Expect = 1e-22
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 430 WTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYIN 489
TPL +A EVV+LLLE +VNA DK+G T L +A ++G+ E+ LLL +GA +N
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 490 IQDRSGDSNLIHAVKGGHRGIVEALLKK 517
+D++G + L A + GH +V+ LL+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 80.9 bits (201), Expect = 7e-19
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 260 LIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
L AA G+ E+V LL++ GA VN DK G TPL A R GH+E+V +LL+AGA+V+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 320 GLWAYMPLYSSA 331
PL+ +A
Sbjct: 65 DKNGRTPLHLAA 76
Score = 77.0 bits (191), Expect = 2e-17
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 153 RDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDH 212
+D NG T L AA+ G L V+ L+ GADVNA+D + +PL AAR G+ +V LL+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Query: 213 GA 214
GA
Sbjct: 91 GA 92
Score = 75.1 bits (186), Expect = 7e-17
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 461 DGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD 520
+G T L +A ++G+ E+ LLL +GA +N +D++G + L A + GH +V+ LL+ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 521 VDIPGKERKTAVYTAVEKGNVPILKLLL 548
V+ K +T ++ A G++ ++KLLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 68.9 bits (170), Expect = 1e-14
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEY 451
G TPL A R GH+E+V +LL+AGA+V+ TPL +A EVV+LLLE
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 65.8 bits (162), Expect = 1e-13
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKIT 588
+T ++ A G++ ++KLLL A D+ K+G TPL A + +LE +++L++ A +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 589 AVDKRGDTVLHIAMRARSKTIVEVFIRN 616
A DK G T LH+A R +V++ +
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 48.5 bits (117), Expect = 1e-07
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G TPL A R GH+E+V +LL+AGA+V+ PL+ +A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
Score = 47.7 bits (115), Expect = 3e-07
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 560 DGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFI 614
+G TPL A + +LE +++L++ A + A DK G T LH+A R +V++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Score = 42.0 bits (100), Expect = 4e-05
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGA 420
G TPL A R GH+E+V +LL+AGA
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 37.7 bits (89), Expect = 9e-04
Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 77/164 (46%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
L A + GH +V+ LL+ DV+ K+K+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNA----------------------------KDKN--- 34
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+T ++ A G++ ++KLLL A D+
Sbjct: 35 --GRTPLHLAARNGHLEVVKLLLEAGADVNAK---------------------------- 64
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGA 181
D NG T L AA+ G L V+ L+ GA
Sbjct: 65 ----------------DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 27.3 bits (62), Expect = 5.0
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 33/92 (35%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D++G + L A + GH +V+ LL+ DV+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------------------------- 63
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLL 100
K+K+ +T ++ A G++ ++KLLL
Sbjct: 64 --KDKN-----GRTPLHLAARNGHLEVVKLLL 88
Score = 26.5 bits (60), Expect = 7.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKK 36
+D++G + L A + GH +V+ LL+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 121 bits (305), Expect = 4e-31
Identities = 56/343 (16%), Positives = 91/343 (26%), Gaps = 87/343 (25%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLD-------HGADLEHRDM-GGWSPLMWAS 231
A + + A + LL D E +D G + L+ A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 232 ---YKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
+ G DT+ALLLD ++ +K+ + D
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDS------------------------LKQFVNASYTDSY 98
Query: 289 Y-GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTV 347
Y G T L A + ++ +V +L++ GA+V A + F E PL+
Sbjct: 99 YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE----LPLS- 153
Query: 348 GLYAKWGSGK--SFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACR 405
L A FLL Q D + S G T L
Sbjct: 154 -LAACTNQLAIVKFLLQN--------SWQPADISARD-----------SVGNTVLHALVE 193
Query: 406 KGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTA 465
+ + T + + + L ++ G T
Sbjct: 194 VADNTVDN-----------------TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236
Query: 466 LTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508
L +A G + +L + A H
Sbjct: 237 LALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHHH 272
Score = 119 bits (301), Expect = 2e-30
Identities = 51/306 (16%), Positives = 80/306 (26%), Gaps = 89/306 (29%)
Query: 151 DDRDDNGGTALMFAAQKGK-------LSFVRELVTRGADVNAEDNDN-WSPLTYA---AR 199
++ A + L F++ R D +D + + L A
Sbjct: 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66
Query: 200 EGYTDVCAELLDHGADLEH-----------RDMGGWSPLMWASYKGHTDTVALLLDKNAD 248
G D A LLD + G + L A + + V LL++ AD
Sbjct: 67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126
Query: 249 VNAHGNYHISS--------------LIWAAGRGYTEIVALLVKKG---AKVNVGDKVYGT 291
V A N L AA IV L++ A ++ D G
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS-VGN 185
Query: 292 TPLVWACRKGHVEIV---------DILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLA 342
T L + + +L GA + L +I + GL
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL----------KLEEITNRKGL- 234
Query: 343 TPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVW 402
TPL L A G + + ++ +
Sbjct: 235 TPLA--LAASSGK---------IGVLAYILQREIH------------------EPECRHA 265
Query: 403 ACRKGH 408
A H
Sbjct: 266 AAHHHH 271
Score = 116 bits (291), Expect = 4e-29
Identities = 44/262 (16%), Positives = 77/262 (29%), Gaps = 62/262 (23%)
Query: 395 YGTTPLVWACRKGHVEIVDILL-------KAGANVDV-AGLYCWTPLLVATL---GNFTE 443
Y + A + + + ++ LL K + + T LL A L +
Sbjct: 12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND 71
Query: 444 VVELLLEYKPNVNAL-----------DKDGCTALTIACKDGYYEIAVLLLNSGAYINIQD 492
+ LLL+ ++L G TAL IA + + LL+ +GA +
Sbjct: 72 TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131
Query: 493 RSGDSN--------------LIHAVKGGHRGIVEALLKK---YVDVDIPGKERKTAVYTA 535
L A IV+ LL+ D+ T ++
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
Query: 536 VEKGNVPIL----------------KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQM 579
VE + + L EI + G TPL A + + +
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251
Query: 580 LIDKKAKITAVDKRGDTVLHIA 601
++ + + H A
Sbjct: 252 ILQR-------EIHEPECRHAA 266
Score = 91.4 bits (227), Expect = 1e-20
Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 54/258 (20%)
Query: 5 DVSSKRDRSGDSNLIHAV---KGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQ 61
D K +G + L+ A+ G + LL D
Sbjct: 45 DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL------------------ 86
Query: 62 RSTTRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVS 121
+ ++ + S + +TA++ A+E+ N+ ++ LL+ D++ A +
Sbjct: 87 ----KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR 142
Query: 122 LCYRTLQS--YIA--EDNLDSLQTFLENKRTVAD--DRDDNGGTALMFAAQKGK------ 169
+ + +A + L ++ L+N AD RD G T L +
Sbjct: 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT 202
Query: 170 ----------LSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHR 219
L +L + +PL AA G V A +L
Sbjct: 203 KFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---- 258
Query: 220 DMGGWSPLMWASYKGHTD 237
A++ H
Sbjct: 259 ---EPECRHAAAHHHHHH 273
Score = 88.3 bits (219), Expect = 1e-19
Identities = 45/254 (17%), Positives = 76/254 (29%), Gaps = 57/254 (22%)
Query: 418 AGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKP-------NVNALDKD-GCTALTIA 469
A LY + A + + +E LL + + D + G T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 470 ---CKDGYYEIAVLLLNSGAYINIQDRSGDSN-----------LIHAVKGGHRGIVEALL 515
+G + LLL+ + + +++ L A++ + +V L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLE 575
+ DV G+ PL A T L
Sbjct: 122 ENGADVQAAANGD-------------------FFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 576 AIQMLIDK---KAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYR------- 625
++ L+ A I+A D G+TVLH + T+ N +L
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222
Query: 626 ------PNKAGETP 633
N+ G TP
Sbjct: 223 LKLEEITNRKGLTP 236
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 116 bits (292), Expect = 4e-31
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 164 AAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGG 223
+ LV RG+ + +D L AAR G D L+ +GAD+ +D G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 224 WSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALL 275
+PL A+ GH + V LLL+ ADV A + ++ + G ++ +L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 113 bits (286), Expect = 3e-30
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 197 AAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYH 256
+ + + L+ G+ + L+ A+ G D V +L+ ADV A
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 257 ISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDIL 309
+ L AA G+ E+V LL++ GA V DK +G T + G+ ++ +IL
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDK-FGKTAFDISIDNGNEDLAEIL 109
Score = 109 bits (275), Expect = 8e-29
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 230 ASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVY 289
S H + L+ + + + + L+ AA G + V +L+ GA V DK
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDK-N 56
Query: 290 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSA 331
G+TPL A R GH+E+V +LL+AGA+V + S
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98
Score = 108 bits (273), Expect = 2e-28
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 403 ACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDG 462
H L+ G+++ LL A + V +L+ +V A DK+G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDL---GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEAL 514
T L +A ++G+ E+ LLL +GA + QD+ G + ++ G+ + E L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 103 bits (259), Expect = 1e-26
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 152 DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLD 211
+ G L+ AA+ G+ VR L+ GADV A+D + +PL AAR G+ +V LL+
Sbjct: 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 212 HGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
GAD+ +D G + + G+ D +L
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 87.6 bits (218), Expect = 5e-21
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
L+ A R G + V IL+ GA+V TPL +A EVV+LLLE +V
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 456 NALDKDGCTALTIACKDGYYEIAVLL 481
A DK G TA I+ +G ++A +L
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 86.5 bits (215), Expect = 1e-20
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 436 ATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSG 495
+ + L+ ++ + D L A + G + +L+ +GA + +D++G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL 547
+ L A + GH +V+ LL+ DV K KTA +++ GN + ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 74.1 bits (183), Expect = 3e-16
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 502 AVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDG 561
H L+ + + + A G +++L+ D+ K+G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 562 DTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613
TPL A + +LE +++L++ A + A DK G T I++ ++ + E+
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 69.9 bits (172), Expect = 7e-15
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER 528
++ + L+ G+++ L+ A + G V L+ DV K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 529 KTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQML 580
T ++ A G++ ++KLLL A D+ K G T ++ N + ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 66.1 bits (162), Expect = 2e-13
Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 44/153 (28%)
Query: 263 AAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLW 322
+ + + LV +G+ + L+ A R G + V IL+ GA+V
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 323 AYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTF 382
PL+ LA A+ G E +K G D
Sbjct: 57 GSTPLH------------LA--------ARNGH---------LEVVKLLLEAGADVX--- 84
Query: 383 SSLLFVLVMHLSYGTTPLVWACRKGHVEIVDIL 415
+G T + G+ ++ +IL
Sbjct: 85 --------AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 59.9 bits (146), Expect = 2e-11
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
G+TPL A R GH+E+V +LL+AGA+V + T ++ ++ E+L
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 58.4 bits (142), Expect = 9e-11
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 535 AVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRG 594
+ L+ + D LL+A + + +++L+ A + A DK G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 595 DTVLHIAMRARSKTIVEVFIRN 616
T LH+A R +V++ +
Sbjct: 58 STPLHLAARNGHLEVVKLLLEA 79
Score = 56.8 bits (138), Expect = 3e-10
Identities = 26/189 (13%), Positives = 43/189 (22%), Gaps = 80/189 (42%)
Query: 21 AVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSLKER 80
H L+ + +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDL------------------------------------ 24
Query: 81 KTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQ 140
+ A G +++L+ D+
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAA-------------------------------- 52
Query: 141 TFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAARE 200
+D NG T L AA+ G L V+ L+ GADV A+D + +
Sbjct: 53 ------------KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 201 GYTDVCAEL 209
G D+ L
Sbjct: 101 GNEDLAEIL 109
Score = 29.9 bits (68), Expect = 0.96
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 18 LIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNLLDK--NKHK 75
L+ A + G V L+ DV K L++ N + LL+ +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGHLEVVKLLLEAGADVXA 85
Query: 76 SLKERKTAVYTAVEKGNVPILKLL 99
K KTA +++ GN + ++L
Sbjct: 86 QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 27.9 bits (63), Expect = 3.9
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+D++G + L A + GH +V+ LL+ D+ + + A +++ N L
Sbjct: 52 AKDKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 113 bits (283), Expect = 1e-27
Identities = 43/215 (20%), Positives = 69/215 (32%), Gaps = 29/215 (13%)
Query: 395 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGN---FTEVVELLLEY 451
+G TPL W ++E+V L+K G+N + L+ A + E LL+Y
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189
Query: 452 -KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGI 510
P + D T L SG + A K +
Sbjct: 190 LYPCLILEDSMNRTILHHII---------------------ITSGMTGCSAAAKYYLDIL 228
Query: 511 VEALLKKYVDVDIPGKERKTAVYTA----VEKGNVPILKLLLTANPDLEIATKDGDTPLL 566
+ ++KK G K + + + L L L +GDT L
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288
Query: 567 KAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIA 601
A + N+ + L+D A +K G +
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 113 bits (283), Expect = 1e-27
Identities = 41/186 (22%), Positives = 61/186 (32%), Gaps = 21/186 (11%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREG---YTDVCAELL 210
D++G T L + L V+ LV G++ DN S L A + + LL
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187
Query: 211 DH-GADLEHRDMGGWSPL----MWASYKGHTDTVALLLD------------KNADVNAHG 253
D+ L D + L + + G + LD
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247
Query: 254 NYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAG 313
+ E + L +N D G T L A R G++ IVD LL G
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYG 306
Query: 314 ANVDVA 319
A+ +A
Sbjct: 307 ADPFIA 312
Score = 106 bits (265), Expect = 3e-25
Identities = 48/262 (18%), Positives = 88/262 (33%), Gaps = 25/262 (9%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGN-FTEVVELLLEYK 452
L E+ L +N + G + + EV + +
Sbjct: 61 MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120
Query: 453 PNVNA-LDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGH---R 508
N+N +D+ G T L E+ L+ G+ D G+S L+ AVK +
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS 180
Query: 509 GIVEALLKK-YVDVDIPGKERKTAVYTAVEKGNVP------------ILKLLLTANPDLE 555
G EALL Y + + +T ++ + + ++ ++
Sbjct: 181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240
Query: 556 IATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAV----DKRGDTVLHIAMRARSKTIVE 611
+ + ++I +D K I + D GDT L+IA R + +IV+
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300
Query: 612 VFIRNPKNNILLYRPNKAGETP 633
+ + NK+G P
Sbjct: 301 ALL---DYGADPFIANKSGLRP 319
Score = 102 bits (254), Expect = 7e-24
Identities = 57/356 (16%), Positives = 100/356 (28%), Gaps = 72/356 (20%)
Query: 180 GADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHR-----------DMGGWSPLM 228
D D+ D+ ++ L + M + L
Sbjct: 9 SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQ 68
Query: 229 WASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAG-RGYTEIVALLVKKGAKVNVGDK 287
+ + L + +++ N+ G + E+ +N+
Sbjct: 69 RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 128
Query: 288 VYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTV 347
+G TPL W ++E+V L+K G+N D E + L
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYG--------------DNMGE----SCL-- 168
Query: 348 GLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHL----SYGTTPLVWA 403
+K + + TF +LL L L S T L
Sbjct: 169 --------------------VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI 208
Query: 404 CRKGHVE------------IVDILLKAGANVDVAGLYCWTPLLVATLGN----FTEVVEL 447
+ ++ ++K +G G E ++L
Sbjct: 209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268
Query: 448 LLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAV 503
+NA D +G T L IA + G I LL+ GA I ++SG +
Sbjct: 269 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 82.8 bits (204), Expect = 2e-17
Identities = 33/240 (13%), Positives = 62/240 (25%), Gaps = 65/240 (27%)
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLD 137
+ T ++ N+ ++K L+ +
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLY----------------------------- 159
Query: 138 SLQTFLENKRTVADDRDDNGGTALMFAAQKG----KLSFVRELVTRGADVNAEDNDNWSP 193
D+ G + L+ A + +F L + ED+ N +
Sbjct: 160 ---------------GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 204
Query: 194 LTYAARE-----------GYTDVCAELL-DHGADLEHRDMGGWSPLMWASYKGHTDTVAL 241
L + Y D+ + D++
Sbjct: 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264
Query: 242 LLDKN----ADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWA 297
LD +NA + + L AA G IV L+ GA + +K G P+ +
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK-SGLRPVDFG 323
Score = 74.3 bits (182), Expect = 2e-14
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 20/164 (12%)
Query: 394 SYGTTPLVWACRKGHV----EIVDILLKAGANVDVAGLYCWTPL------------LVAT 437
+ G + LV A + + +L + + T L A
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 221
Query: 438 LGNFTEVVELLLEYKPNVNALDKDGCTALTIA----CKDGYYEIAVLLLNSGAYINIQDR 493
++ +++ + + + KD E L +N QD
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281
Query: 494 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTAVYTAVE 537
+GD+ L A + G+ IV+ALL D I K V
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 70.1 bits (171), Expect = 4e-13
Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 56/242 (23%)
Query: 5 DVSSKRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRST 64
+++ D G++ L + +V+ L+K +
Sbjct: 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY---------------------- 159
Query: 65 TRNLLDKNKHKSLKERKTAVYTAVEKGNVP----ILKLLLTANPDLEIATKTLPRSDSM- 119
+ ++ + AV+ N LL P L + DSM
Sbjct: 160 ------GDNMG-----ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE-------DSMN 201
Query: 120 -------VSLCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSF 172
+ T S A+ LD L ++ K+ N + +
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261
Query: 173 VRELV----TRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLM 228
+ E + +NA+D++ + L AAR G + LLD+GAD + G P+
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 321
Query: 229 WA 230
+
Sbjct: 322 FG 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 108 bits (271), Expect = 2e-26
Identities = 47/274 (17%), Positives = 81/274 (29%), Gaps = 61/274 (22%)
Query: 189 DNWSPLTYAAR---EGYTDVCAELLDHGADLEHRDMG----GWSPLMWA---SYKGHTDT 238
+ +R +G + + LL H L + G + L A G DT
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 239 VALLLDK-----------NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDK 287
+ +LLD N+ ++L A R V LLV+KGA V+ +
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 288 -------------VYGTTPLVWACRKGHVEIVDILLKAG---ANVDVAGLWAYMPLYSSA 331
+G PL A IV L + G A++ L++
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184
Query: 332 LADIFSEPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVM 391
+ + LL K + + +
Sbjct: 185 AIADNTRENTKFVTKMY---------DLLLIKCAKL---------------FPDTNLEAL 220
Query: 392 HLSYGTTPLVWACRKGHVEIVDILLKAGANVDVA 425
+ G +PL+ A + G + I +++ A
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA 254
Score = 107 bits (269), Expect = 3e-26
Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 37/186 (19%)
Query: 152 DRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLD 211
D G TAL A ++ +V LV +GADV+A+ + Y
Sbjct: 88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF-------- 139
Query: 212 HGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK---NADVNAHGNYHISSLIWAAGRG- 267
G PL A+ V L + AD+ + + L
Sbjct: 140 -----------GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188
Query: 268 --------YTEIVALLVKKGAKVNVGDKV------YGTTPLVWACRKGHVEIVDILLKAG 313
T++ LL+ K AK+ + G +PL+ A + G + I +++
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248
Query: 314 ANVDVA 319
A
Sbjct: 249 IADAAA 254
Score = 101 bits (252), Expect = 4e-24
Identities = 43/254 (16%), Positives = 69/254 (27%), Gaps = 55/254 (21%)
Query: 394 SYGTTPLVWA----CRKGHVEIVDILLKAGANV----DVAGLYCWTPLLVATL---GNFT 442
+ L G ++ LL + T L A L
Sbjct: 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRN 62
Query: 443 EVVELLLEYKP-----------NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQ 491
+ + +LL+ + G TAL IA + LL+ GA ++ Q
Sbjct: 63 DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122
Query: 492 DRSGDSN--------------LIHAVKGGHRGIVEALLKK---YVDVDIPGKERKTAVYT 534
R L A IV L + D+ T ++
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182
Query: 535 AVEKGN---------VPILKLLL-------TANPDLEIATKDGDTPLLKAVKTRNLEAIQ 578
V + + LLL + DG +PL+ A KT + Q
Sbjct: 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242
Query: 579 MLIDKKAKITAVDK 592
+I ++ A
Sbjct: 243 HIIRREIADAAAHH 256
Score = 92.9 bits (231), Expect = 3e-21
Identities = 41/267 (15%), Positives = 72/267 (26%), Gaps = 50/267 (18%)
Query: 255 YHISSLIWAAGRG----YTEIVALLVKKGAKVNVGDKV---YGTTPLVWA---CRKGHVE 304
++ L RG +++ L+ ++ + G T L A G +
Sbjct: 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63
Query: 305 IVDILLKAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKSFLLPKL 364
+ ILL + P T L + +
Sbjct: 64 TIPILLDIAEKTGNMREFINSPFRDV-------YYRGQTALHIA--IERRC--------- 105
Query: 365 KEEMKHFERQGVDP---TFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAG-- 419
K ++ +G D + +G PL A IV L + G
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165
Query: 420 -ANVDVAGLYCWTPL---------LVATLGNFTEVVELLLEYKPNVNA-------LDKDG 462
A++ T L T++ +LLL + L+ DG
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225
Query: 463 CTALTIACKDGYYEIAVLLLNSGAYIN 489
+ L +A K G I ++
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 91.4 bits (227), Expect = 1e-20
Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 67/272 (24%)
Query: 287 KVYGTTPLVWA----CRKGHVEIVDILLKAGANVDVAGLWAYM----PLYSSALADIFSE 338
KV+ L G ++ LL + L + L
Sbjct: 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61
Query: 339 PGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTT 398
L + + K G+ + F+ ++ G T
Sbjct: 62 NDTIPIL-LDIAEKTGNMREFINSPFRDVYY-------------------------RGQT 95
Query: 399 PLVWACRKGHVEIVDILLKAGANVD--------------VAGLYCWTPLLVATLGNFTEV 444
L A + V++L++ GA+V + PL +A N +
Sbjct: 96 ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155
Query: 445 VELLLEYKP---NVNALDKDGCTAL---------TIACKDGYYEIAVLLLNSGAYIN--- 489
V L E ++ D G T L T ++ LLL A +
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
Query: 490 ----IQDRSGDSNLIHAVKGGHRGIVEALLKK 517
+ + G S L+ A K G GI + ++++
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247
Score = 80.6 bits (199), Expect = 4e-17
Identities = 43/275 (15%), Positives = 75/275 (27%), Gaps = 75/275 (27%)
Query: 5 DVSSKRDRSGDSNLIHAV---KGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQ 61
D + +G + L A+ G + LL +
Sbjct: 37 DEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE---------------- 80
Query: 62 RSTTRNLLDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVS 121
++ +TA++ A+E+ ++LL+ D+
Sbjct: 81 ------FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-------------- 120
Query: 122 LCYRTLQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRG- 180
A+ Q G L AA + V L G
Sbjct: 121 ----------AQARGRFFQP------KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164
Query: 181 --ADVNAEDNDNWSPLTYAA---------REGYTDVCAELLDHGADLEH-------RDMG 222
AD+ +D+ + L + T + LL A L +
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224
Query: 223 GWSPLMWASYKGHTDTVALLLDKNA-DVNAHGNYH 256
G SPLM A+ G ++ + D AH ++H
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 62.9 bits (153), Expect = 4e-11
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 43/191 (22%)
Query: 464 TALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSN----LIHAV---KGGHRGIVEALLK 516
++ DG + LL + ++ S L A+ G + LL
Sbjct: 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70
Query: 517 KYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEA 576
+ N G T L A++ R
Sbjct: 71 IAEKTGNMRE----------------------FINSPFRDVYYRGQTALHIAIERRCKHY 108
Query: 577 IQMLIDKKAKITAVDK--------------RGDTVLHIAMRARSKTIVEVFIRNPKNNIL 622
+++L++K A + A + G+ L +A IV N
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168
Query: 623 LYRPNKAGETP 633
L R + G T
Sbjct: 169 LRRQDSRGNTV 179
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 75.6 bits (185), Expect = 8e-15
Identities = 30/91 (32%), Positives = 39/91 (42%)
Query: 154 DDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHG 213
+ T L+ A L L+ GA+VN D+ PL +A G+T + L G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 214 ADLEHRDMGGWSPLMWASYKGHTDTVALLLD 244
ADL RD G PL A + D V LL
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 71.0 bits (173), Expect = 2e-13
Identities = 29/100 (29%), Positives = 40/100 (40%)
Query: 452 KPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIV 511
N +D T L A LL +GA +N D +G L HA GH G+
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLA 284
Query: 512 EALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTAN 551
LK+ D+ E + + A+E N I+ LL A
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324
Score = 70.6 bits (172), Expect = 3e-13
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNV 455
TPL+ A + + LL+ GANV+ A PL AT+ T + L L+ ++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 456 NALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHR 508
A D +G LTIA + +I LL A + + + R
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRL--AKMREAEAAQGQAGDETYLDIFR 345
Score = 69.0 bits (168), Expect = 1e-12
Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 2/149 (1%)
Query: 369 KHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVD--VAG 426
K R + + L G + + + L GA+V+ G
Sbjct: 173 KPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG 232
Query: 427 LYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGA 486
TPL+ AT N E LL+ NVN D G L A G+ +A L L GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 487 YINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+ +D G L A++ + IV L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 65.2 bits (158), Expect = 2e-11
Identities = 38/173 (21%), Positives = 55/173 (31%), Gaps = 36/173 (20%)
Query: 145 NKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNA--EDNDNWSPLTYAAREGY 202
+ G + L + + + GADVN DN +PL A
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 203 TDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIW 262
C LL +GA++ D G PL A+ GHT
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHT-------------------------- 281
Query: 263 AAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
+ L +K+GA + D G PL A + +IV +L A
Sbjct: 282 -------GLACLFLKRGADLGARDSE-GRDPLTIAMETANADIVTLLRLAKMR 326
Score = 61.7 bits (149), Expect = 3e-10
Identities = 20/97 (20%), Positives = 35/97 (36%)
Query: 524 PGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDK 583
G++ T + A ++ + LL ++ A G PL A + + + +
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 584 KAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNN 620
A + A D G L IAM + IV +
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327
Score = 56.7 bits (136), Expect = 1e-08
Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 3/124 (2%)
Query: 127 LQSYIAEDNLDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAE 186
L A ++L + + L+N V + D G L A G + RGAD+ A
Sbjct: 239 LIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 187 DNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKN 246
D++ PLT A D LL E G D + D
Sbjct: 298 DSEGRDPLTIAMETANAD-IVTLLRLAKMREAEAAQG-QAGDETYLDIFRDFSLMASDDP 355
Query: 247 ADVN 250
++
Sbjct: 356 EKLS 359
Score = 54.4 bits (130), Expect = 6e-08
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 223 GWSPLMWASYKGHTDTVALLLDKNADVNA--HGNYHISSLIWAAGRGYTEIVALLVKKGA 280
G + + T+A L ADVN G + + LI A L++ GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 281 KVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
VN D G PL A GH + + LK GA++
Sbjct: 260 NVNQADSA-GRGPLHHATILGHTGLACLFLKRGADLGAR 297
Score = 51.3 bits (122), Expect = 5e-07
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 533 YTAVEKGNVPILKLLL--TANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAV 590
+ ++P + L A+ + +D TPL++A +L A + L+ A +
Sbjct: 205 RASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA 264
Query: 591 DKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYRPNKAGETPYSIDMNNQ 641
D G LH A + +F++ + L + G P +I M
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETA 312
Score = 39.8 bits (92), Expect = 0.002
Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 41/144 (28%)
Query: 279 GAKVNVGDKVY-GTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFS 337
GA VN + TPL+ A + + LL+ GANV+ A PL+ + +
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL---- 278
Query: 338 EPGLATPLTVGLYAKWGSGKSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGT 397
G + F ++G D S G
Sbjct: 279 ------------------GHT-------GLACLFLKRGADLGARDSE-----------GR 302
Query: 398 TPLVWACRKGHVEIVDILLKAGAN 421
PL A + +IV +L A
Sbjct: 303 DPLTIAMETANADIVTLLRLAKMR 326
Score = 31.7 bits (71), Expect = 0.85
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 33/111 (29%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
+ D +G L HA GH G+ LK+ D+
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR------------------------- 297
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSM 119
E + + A+E N I+ LL A A + ++
Sbjct: 298 --------DSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY 340
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 73.1 bits (179), Expect = 2e-14
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 145 NKRTVADDRDDNGGTALMFAAQKGKLSFVRE---LVTRGADVNAEDNDNWSPLTYAAREG 201
++ + + TAL A + + + LV +++ + + L Y
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216
Query: 202 YTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLD-KNADVNAHGNYHIS 258
+ LL A +E + G +PL A H LL + N+H +
Sbjct: 217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274
Score = 70.0 bits (171), Expect = 2e-13
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 431 TPLLVATL---GNFTEVVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAY 487
T L +A +V+ L++ N++ G TAL C E LLL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 488 INIQDRSGDSNLIHAVKGGHRGIVEALLK 516
I I + SG++ L A + H E L +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 69.3 bits (169), Expect = 4e-13
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 396 GTTPLVWACRKG---HVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
T L A R + IVD L++ N+D T L L + E ++LLL K
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNS 484
++ ++ G T L IA + + LL +
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 65.8 bits (160), Expect = 6e-12
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 43/161 (26%)
Query: 164 AAQKGKLSFVRELVTRGADVNAEDN------DNWSPLTYAAREG---YTDVCAELLDHGA 214
A + + + + G D+ + + + L A R + L+ +
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 215 DLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVAL 274
+L+ + G + L + + E + L
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNA---------------------------------ECLKL 223
Query: 275 LVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGAN 315
L++ A + + ++ G TPL A R H ++L +A +
Sbjct: 224 LLRGKASIEIANES-GETPLDIAKRLKHEHCEELLTQALSG 263
Score = 63.5 bits (154), Expect = 3e-11
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 459 DKDGCTALTIACKDG---YYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALL 515
+ TAL +A + I L+ + ++ Q G + L + + ++ LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 516 KKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
+ ++I + +T + A + +LL A
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 58.1 bits (140), Expect = 2e-09
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 530 TAVYTAVEKGN---VPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAK 586
TA++ AV + + I+ L+ + +L+ T G T L T N E +++L+ KA
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 587 ITAVDKRGDTVLHIAMRARSKTIVEVFI 614
I ++ G+T L IA R + + E+
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 53.1 bits (127), Expect = 9e-08
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G+T L + C + E + +LL+ A++++A TPL +A ELL +
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 49.6 bits (118), Expect = 1e-06
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 229 WASYKGHTDTVALLLDKNADVNAHGNYHISS---------LIWAAGRGYTEIVALLVKKG 279
A + D+ + + R IV LV+
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195
Query: 280 AKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVA 319
++ G+T L + C + E + +LL+ A++++A
Sbjct: 196 GNLDKQTGK-GSTALHYCCLTDNAECLKLLLRGKASIEIA 234
Score = 48.8 bits (116), Expect = 2e-06
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 482 LNSGAYINIQDRSGDSN--LIHAVKGGHRG---IVEALLKKYVDVDIPGKERKTAVYTAV 536
++ I + + L AV+ R IV+ L++ ++D + TA++
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213
Query: 537 EKGNVPILKLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLI 581
N LKLLL +EIA + G+TPL A + ++ ++L
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 47.3 bits (112), Expect = 7e-06
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 516 KKYVDVD-IPGKERKTAVYTAVEKGNVPILKLLLTANPDLEI------ATKDGDTPLLKA 568
++Y + ++ AV+ ++ L DL + +T L A
Sbjct: 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA 176
Query: 569 VKTRN---LEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYR 625
V++ + L + L+ + +G T LH + +++ +R + +
Sbjct: 177 VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS---IEI 233
Query: 626 PNKAGETPYSI 636
N++GETP I
Sbjct: 234 ANESGETPLDI 244
Score = 28.4 bits (63), Expect = 7.9
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 33/94 (35%)
Query: 9 KRDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKVRKLSDALNVTDANDQRSTTRNL 68
K+ G + L + + ++ LL+ ++I
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA------------------------- 234
Query: 69 LDKNKHKSLKERKTAVYTAVEKGNVPILKLLLTA 102
+++ +T + A + +LL A
Sbjct: 235 -NESG-------ETPLDIAKRLKHEHCEELLTQA 260
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 69.6 bits (170), Expect = 4e-13
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 145 NKRTVADDRDDNGGTALMFAAQKGK---LSFVRELVTRGADVNAEDNDNWSPLTYAAREG 201
+ D L A + L V ++ G ++A+ D + L YAA
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237
Query: 202 YTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALL 242
D LL A + + G + L A K H + LL
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 68.5 bits (167), Expect = 9e-13
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 396 GTTPLVWACRKGH---VEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
L A + + + +VD +++ G ++D T L A L N + ++LLL+ +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLLLNS 484
V +++ G TAL IA K + E LL +
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 66.9 bits (163), Expect = 3e-12
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 403 ACRKGHVEIVDILLKAGANVDVAGLYC------WTPLLVATL---GNFTEVVELLLEYKP 453
A + V G + L +A +V+ +++
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217
Query: 454 NVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEA 513
+++A DG TAL A + LLL A + + +G++ L A K H+ E
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 514 LLK 516
L +
Sbjct: 278 LEQ 280
Score = 65.0 bits (158), Expect = 1e-11
Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 45/195 (23%)
Query: 132 AEDNLDSLQTFLENK--RTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDN- 188
AE ++ + + ++ K R L A L V E G D
Sbjct: 124 AESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPG 183
Query: 189 -----DNWSPLTYAAREGYTD---VCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVA 240
L A + + ++ +G L+ + G + L +A+ D +
Sbjct: 184 PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK 243
Query: 241 LLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRK 300
LLL K A V ++ G T L A +K
Sbjct: 244 LLL---------------------------------KGRALVGTVNEA-GETALDIARKK 269
Query: 301 GHVEIVDILLKAGAN 315
H E ++L +A A
Sbjct: 270 HHKECEELLEQAQAG 284
Score = 62.7 bits (152), Expect = 7e-11
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 461 DGCTALTIACKDGY---YEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKK 517
L +A K + ++ +G +++ + G++ L +A ++ LLK
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 518 YVDVDIPGKERKTAVYTAVEKGNVPILKLLLTA 550
V + +TA+ A +K + +LL A
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 56.9 bits (137), Expect = 5e-09
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 496 DSNLIHAVKGGHRGIVEALLKKYVDVDIPGKER------KTAVYTAVEKGN---VPILKL 546
L A+ V D P + ++ AV+ N +P++
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 211
Query: 547 LLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606
++ L+ DG+T L A + +++L+ +A + V++ G+T L IA +
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271
Query: 607 KTIVEVFI 614
K E+
Sbjct: 272 KECEELLE 279
Score = 52.3 bits (125), Expect = 2e-07
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 396 GTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPN 454
G T L +A + + +LLK A V T L +A + E ELL + +
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 52.3 bits (125), Expect = 2e-07
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 247 ADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIV 306
D A + + A + +V +++ G ++ G T L +A + +
Sbjct: 184 PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCL 242
Query: 307 DILLKAGANVDV 318
+LLK A V
Sbjct: 243 KLLLKGRALVGT 254
Score = 46.9 bits (111), Expect = 9e-06
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 14/131 (10%)
Query: 517 KYVDVD--IPGKERKTAVYTAVEKGNVPILKLLLTANPDL------EIATKDGDTPLLKA 568
KYV+ ++TA+ ++ + D A + L A
Sbjct: 138 KYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA 197
Query: 569 V---KTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYR 625
V +L + +I + A G+T LH A +++ ++ +
Sbjct: 198 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL---VGT 254
Query: 626 PNKAGETPYSI 636
N+AGET I
Sbjct: 255 VNEAGETALDI 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 6e-13
Identities = 100/665 (15%), Positives = 183/665 (27%), Gaps = 178/665 (26%)
Query: 25 GHRGIVEALLKKYV------DV-DIPGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSL 77
++ I+ +V DV D+P + + ++ + D S T L K
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-- 74
Query: 78 KERKTAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSD------SMVSLCYRTLQSYI 131
++ V VE+ K L++ I T+ S Y Q +
Sbjct: 75 --QEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSMMTRMYIEQRDRLYNDNQVF- 126
Query: 132 AEDNLDSLQTFLENKRTVADDRDDNG----GTALMFAAQKGKLSFVRELVTRGADVNAED 187
A+ N+ LQ +L+ ++ + + R G + + GK + V V +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDG---VLGS--GKTWVALD-VCLSYKVQCKM 180
Query: 188 NDN--WSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDK 245
+ W L + +L+ L ++ W S H+ + L +
Sbjct: 181 DFKIFW--LNL----KNCNSPETVLEMLQKLLYQIDP-----NWTSRSDHSSNIKLRIHS 229
Query: 246 NADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWA-----CRK 300
+ L+ + Y LLV V W C+
Sbjct: 230 IQA-------ELRRLL--KSKPYEN--CLLVL--------LNVQ--NAKAWNAFNLSCK- 267
Query: 301 GHVEIVDILL--KAGANVDVAGLWAYMPLYSSALADIFSEPGLATPLTVGLYAKWGSGKS 358
ILL + D ++ ++ L L K+ +
Sbjct: 268 -------ILLTTRFKQVTDFLS-----AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 359 FLLPK----------------LKEEMKHFER-----------------QGVDPTFT---F 382
LP+ +++ + ++ ++P F
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 383 SSL-LFVLVMHLSYGTTPLVWACRKGHV--EIVDILLKAG-ANVDVAGLYCWTP-LLVAT 437
L +F H+ L+W +V+ L K P + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 438 LGNFTEVVEL---LLE-YKPNVNALDKDGCTALTIACKDGY-YEIAVLLLNSGAYINIQD 492
L +++ Y D D + D Y Y +I
Sbjct: 436 KVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYL---DQYFYS----------HI---- 477
Query: 493 RSGDSNLIHAVKGGHRGIVEALLKKYVDVD-IPGKERKTAVYTAVEKGNVPILKLLLTAN 551
G H H + ++D + K R + + IL L
Sbjct: 478 --GH----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD---STAWNASGSILNTLQ--- 525
Query: 552 PDLE-----IATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARS 606
L+ I D R + AI + K + K D +L IA+ A
Sbjct: 526 -QLKFYKPYICDNDPK-------YERLVNAILDFLPKIEENLICSKYTD-LLRIALMAED 576
Query: 607 KTIVE 611
+ I E
Sbjct: 577 EAIFE 581
Score = 42.5 bits (99), Expect = 4e-04
Identities = 38/311 (12%), Positives = 90/311 (28%), Gaps = 87/311 (27%)
Query: 4 DDVSSKRD--------R----SGDSNLIHAVKGGHRGIV--------------EALLKKY 37
+V + + + + + + + ++LL KY
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 38 VDV---DIPGKVRKLSD-ALNVTDANDQRSTTRNLLDKNKHKSLKERKTAVYTAVEKGNV 93
+D D+P +V + L++ + + D KH + + T + +++
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 94 PILKLLLTA----NPDLEIATKTLPR---------SDSMVSLCYRTLQSYIAEDN----- 135
+ + P I T L +V+ ++ S + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTI 426
Query: 136 -LDSLQTFLENKRTVADDRDDNGGTALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSPL 194
+ S+ LE K + ++ + R +V D+D+ P
Sbjct: 427 SIPSIY--LELKVKLENEYALH-----------------RSIVDHYNIPKTFDSDDLIPP 467
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSP-----LMWASYK-GHTDT----VALLLD 244
+ Y + + H ++EH + + K H T +L+
Sbjct: 468 YL---DQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 245 KNADVNAHGNY 255
+ + Y
Sbjct: 523 TLQQLKFYKPY 533
Score = 35.6 bits (81), Expect = 0.063
Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 58/179 (32%)
Query: 506 GHRGIVEALLKKYV---DV-DIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDG 561
++ I+ +V D D+ + ++ + E + I+ D T
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDH--IIMS-----KDAVSGTLR- 66
Query: 562 DTPLLKAVKTRNLEAIQMLID-----------KKAKITAVDKRGDTVLHIAMRARSKTIV 610
L + ++ E +Q ++ K T ++I R R
Sbjct: 67 ---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 611 EVF-------------IRN------PKNNILLYRPNKAGETPYSIDMNNQKSILAQECC 650
+VF +R P N+L+ +G K+ +A + C
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-----------KTWVALDVC 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 97/551 (17%), Positives = 165/551 (29%), Gaps = 182/551 (33%)
Query: 159 TALMFAAQKGKLSFVRELVTRGADVNAEDNDNWSP-------LTYAARE-------GYTD 204
TA F A + + F + L + A D++ +P L Y + +
Sbjct: 24 TASFFIASQLQEQFNKILPEP-TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 205 VCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHG----NY----- 255
V L E+ + G + + H LL + + + NY
Sbjct: 83 VLNLCLTE---FENCYLEG-NDI-------HALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 256 ---------HISSLIWAAGRGYTEIVALLVKKGAKVNVGD------KVYGT-TPLVWACR 299
S+L A G G ++VA+ G + N D +Y T LV
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIF---GGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 300 KGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFS---EPGLATPLTVGLYAKWGSG 356
K E + L++ + + +++ L +I P TP
Sbjct: 189 KFSAETLSELIRTTLDAE--------KVFTQGL-NILEWLENPS-NTP-----------D 227
Query: 357 KSFLLPKLKEEMKHFERQGVDPTFTFSSLLFVLVMHLSYGTTPLVWACRKG---HVEIVD 413
K +LL + S L ++ Y T + E+
Sbjct: 228 KDYLL-----------------SIPISCPLIGVIQLAHYVVT-----AKLLGFTPGELRS 265
Query: 414 ILLKAGANVDVAGLYCWTPLLVAT-------LGNFTEVVELLL-------EYKPNVN--- 456
L GA GL T + +A + + + +L E PN +
Sbjct: 266 YL--KGATGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 457 ALDKD----GCTALT--IACKD---GYYEIAVLLLNS----GAYINIQDRSGDSNLIHAV 503
++ +D + ++ + + V NS G + I +G NL V
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL---V 378
Query: 504 KGGH----RGIVEALLKKYV--DVD---IPGKERKTAVYTAVEKGNVPIL-----KLLLT 549
G G+ L K +D IP ERK +P+ LL+
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF----LPVASPFHSHLLVP 434
Query: 550 ANP----------------DLEI---ATKDG-DTPLLKAVKTRNLEAIQMLIDKKAKITA 589
A+ D++I T DG D +L + + + +I K
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPVKWET 492
Query: 590 VDKRGDTVLHI 600
+ T HI
Sbjct: 493 TTQFKAT--HI 501
Score = 52.7 bits (126), Expect = 4e-07
Identities = 82/461 (17%), Positives = 138/461 (29%), Gaps = 168/461 (36%)
Query: 289 YGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWAYMPLYSSALADIFS----EP--GLA 342
Y T PL + G +E +L+ + +S L + F+ EP G A
Sbjct: 4 YSTRPLTLS--HGSLE-HVLLVPTA-------SF----FIASQLQEQFNKILPEPTEGFA 49
Query: 343 T---PLT-VGLYAK----------WGSGKSFLLPKLKEEMKHFER---QGVD-------- 377
P T L K F L + FE +G D
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 378 PTFTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVAT 437
++L+ + +Y T + A R + L +A A L A
Sbjct: 109 LQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRA-VGEGNAQLV-------AI 159
Query: 438 L---GN----FTEVVELLLEYKPNVNALDKDGCTAL------TIACKDGYYE-------- 476
GN F E+ +L Y V L K L T+ + + +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 477 ---------------------IAVLLLNSGAYINIQDRSGDS--NLIHAVKG--GH-RGI 510
I V+ L Y+ G + L +KG GH +G+
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 511 VEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLL-------------LTANPD-LEI 556
V A+ I + + + +V K + +L + P LE
Sbjct: 278 VTAVA-------IAETDSWESFFVSVRK----AITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 557 ATKDGD---TPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVF 613
+ ++ + +P+L ++ E +Q ++K K+ + I++
Sbjct: 327 SLENNEGVPSPML-SISNLTQEQVQDYVNKTNSHLPAGKQ----VEISL----------- 370
Query: 614 IRN-PKNNIL------LY------RPNKAG------ETPYS 635
N KN ++ LY R KA P+S
Sbjct: 371 -VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Score = 47.7 bits (113), Expect = 1e-05
Identities = 101/587 (17%), Positives = 168/587 (28%), Gaps = 221/587 (37%)
Query: 85 YTA--VEKGNV----PILKLLLTA-------NPDL-EIATKTLPRSDSMVSLCYRTLQSY 130
Y + VE V +L L LT D+ +A K L +D+ + +++Y
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 131 IAEDNLDSLQTFLENKRTVADDRDDNGGT-ALMFAAQKGK-------------------L 170
I R +A D AL A +G L
Sbjct: 127 IT-------------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 171 --------SFVRELVTRGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMG 222
V +L+ A+ L+ R T ++ G ++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAET----------LSELIRT--TLDAEKVFTQGLNIL----- 216
Query: 223 GW------------------S-PLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWA 263
W S PL+ H A LL G S L A
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-----PGELR-SYLKGA 270
Query: 264 AGRGYTEIVALLVKKGAKVNVGDKVYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLWA 323
G + A+ + A+ + + + + + + +L G V A
Sbjct: 271 TGHSQGLVTAVAI---AETDSWESFFVSV----------RKAITVLFFIG----VRCYEA 313
Query: 324 YMPLYS---SALADIFSEP---GLATP-LTV-GLYAKWGSGKSFLLPKLKEEMKHF-ERQ 374
Y P S S L D S G+ +P L++ L + + + + H +
Sbjct: 314 Y-PNTSLPPSILED--SLENNEGVPSPMLSISNL------TQEQVQDYVNKTNSHLPAGK 364
Query: 375 GVDPTFTFSSLL-----FVL---VMHLSYGTTPLVWACRKGHVEIVDILLKAGANVD--- 423
V SL+ V+ L YG L RK KA + +D
Sbjct: 365 QV-----EISLVNGAKNLVVSGPPQSL-YG---LNLTLRK---------AKAPSGLDQSR 406
Query: 424 -------VAGLYCW--------TPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTI 468
+ + + LL +L+ + L K+ ++
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLL-------VPASDLINK------DLVKNN---VSF 450
Query: 469 ACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVD-------- 520
KD +I V G+ ++ R ++ IV+ +++ V
Sbjct: 451 NAKD--IQIPVYDTFDGS--DL--RVLSGSISER-------IVDCIIRLPVKWETTTQFK 497
Query: 521 ----VDI-PGKERKTAVYTAVEK---GNVPILKLLLTANPDLEIATK 559
+D PG V T K G I+ L NPD + K
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 39.6 bits (92), Expect = 0.003
Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 95/294 (32%)
Query: 25 GHRGIVEALLKKYVDVD--IPGKVRKLSDALNVTDANDQRSTTRNLLDK-NKHKSLKERK 81
+ + ++L+ ++ + +P S L++++ + ++ ++K N H L K
Sbjct: 315 PNTSLPPSILEDSLENNEGVP------SPMLSISNLT--QEQVQDYVNKTNSH--LPAGK 364
Query: 82 TAVYTAVEKGNVPILKLLLTANPDLEIATKTLPRSDSMVSLCYRTLQSYIAEDNLDSLQT 141
V ++ N L+++ P S+ L TL+ A LD Q+
Sbjct: 365 -QVEISLV--NGA-KNLVVSGPPQ------------SLYGLN-LTLRKAKAPSGLD--QS 405
Query: 142 FLENKRTVADDRDDNGG-----------TALMFAAQKGKLSFVRELVTRGADVNAEDNDN 190
R +R + L+ A ++LV NA+D
Sbjct: 406 -----RIPFSERKLKFSNRFLPVASPFHSHLLVPASD---LINKDLVKNNVSFNAKD--- 454
Query: 191 WSPLT---YAAREGYTDVCAELLDHGADLEHR--DMGGWSPLMW-------ASY-----K 233
+ Y +G +D+ + R D P+ W A++
Sbjct: 455 ---IQIPVYDTFDG-SDLR----VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 234 GHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEIVALLVKKGAKVNVGDK 287
G + +L +N D G G IVA + + G K
Sbjct: 507 GGASGLGVLTHRNKD----------------GTGVRVIVAGTLDINPDDDYGFK 544
Score = 38.9 bits (90), Expect = 0.006
Identities = 50/311 (16%), Positives = 88/311 (28%), Gaps = 110/311 (35%)
Query: 314 ANVDVA-GLW--A---YMPLYSSALADIFSE-PGLATPLTVGLYAKWGSGKSFLLPKLKE 366
A +W A + Y ++ DI P LT+ + G +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNP---VNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 367 EMKHFERQGVDPTF-----TFSSLLF-----VLVMHLSYGTTP--LVWACRKGHVEIVDI 414
E + + F +S F +L + T P + +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL--SATQFTQPALTLME-----KAAFED 1746
Query: 415 LLKAG---ANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACK 471
L G A+ AG +LG EY AL A
Sbjct: 1747 LKSKGLIPADATFAGH---------SLG----------EY------------AAL--ASL 1773
Query: 472 DGYYEI--AVLLLNS-GAYINI---QDRSGDSNL-IHAVKGG--HRGIVEALLKKYVD-- 520
I V ++ G + + +D G SN + A+ G + L+ V+
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 521 -------VDI-----PGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTPLLKA 568
V+I + Y V G++ L+ T +L
Sbjct: 1834 GKRTGWLVEIVNYNVENQ-----QY--VAAGDLR----------ALDTVTN-----VLNF 1871
Query: 569 VKTRNLEAIQM 579
+K + ++ I++
Sbjct: 1872 IKLQKIDIIEL 1882
Score = 31.2 bits (70), Expect = 1.3
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 43/108 (39%)
Query: 10 RDRSGDSNL-IHAVKGGH----------RGIVEALLKK----------------YVDVDI 42
RD G SN + A+ G + +VE + K+ YV
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV---A 1855
Query: 43 PGKVRKLSDALNVTDANDQRSTTRNLLDKNKHKSLKERKTAVYTAVEK 90
G +R L D + N+L+ K + + + ++E+
Sbjct: 1856 AGDLRAL-DTVT------------NVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 30.4 bits (68), Expect = 2.6
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 53/138 (38%)
Query: 505 GGHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANPDLEIATKDGDTP 564
GG +G + + + Y + ++ + G + K+ N T +
Sbjct: 1677 GGEKG--KRIRENYSAM----------IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLY 624
LL A T+ Q A+ K E +++ K I
Sbjct: 1725 LLSA--TQFT---Q---------------------PALTLMEKAAFED-LKS-KGLI--- 1753
Query: 625 RPNKA-------GETPYS 635
P A GE Y+
Sbjct: 1754 -PADATFAGHSLGE--YA 1768
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 61.1 bits (148), Expect = 6e-10
Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 9/144 (6%)
Query: 127 LQSYIAEDNLDS-LQTFLE----NKRTVADDRDDNGGTALMFA---AQKGKLSFVRELVT 178
L + I +L S L+ F + D L A A + L V ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 179 RGADVNAEDNDNWSPLTYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDT 238
G ++A+ D + L YAA D LL A + + G + L A K H +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 239 VALL-LDKNADVNAHGNYHISSLI 261
LL + + S +I
Sbjct: 256 EELLEQAQAGTFAFPLHVDYSWVI 279
Score = 57.6 bits (139), Expect = 6e-09
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 444 VVELLLEYKPNVNALDKDGCTALTIACKDGYYEIAVLLLNSGAYINIQDRSGDSNLIHAV 503
+V+ +++ +++A DG TAL A + LLL A + + +G++ L A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 504 KGGHRGIVEALLK 516
K H+ E L +
Sbjct: 249 KKHHKECEELLEQ 261
Score = 55.7 bits (134), Expect = 3e-08
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 396 GTTPLVWACR---KGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYK 452
L A + + + +VD +++ G ++D T L A L N + ++LLL+ +
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 453 PNVNALDKDGCTALTIACKDGYYEIAVLL 481
V +++ G TAL IA K + E LL
Sbjct: 231 ALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 53.0 bits (127), Expect = 2e-07
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 15/142 (10%)
Query: 415 LLKAGANVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIACK--- 471
L A N D+ + A +F + + L +A K
Sbjct: 136 LWTAICNRDLLSVL----EAFANGQDFGQPL--------PGPDAQAPEELVLHLAVKVAN 183
Query: 472 DGYYEIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDIPGKERKTA 531
+ ++ +G +++ + G++ L +A ++ LLK V + +TA
Sbjct: 184 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243
Query: 532 VYTAVEKGNVPILKLLLTANPD 553
+ A +K + +LL A
Sbjct: 244 LDIARKKHHKECEELLEQAQAG 265
Score = 52.2 bits (125), Expect = 4e-07
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 494 SGDSNLIHAVKGGHRGIVEALLKKYVDVDIP------GKERKTAVYTAVE---KGNVPIL 544
L A+ V D P + ++ AV+ + ++P++
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190
Query: 545 KLLLTANPDLEIATKDGDTPLLKAVKTRNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRA 604
++ L+ DG+T L A + +++L+ +A + V++ G+T L IA +
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 605 RSKTIVEVF 613
K E+
Sbjct: 251 HHKECEELL 259
Score = 50.3 bits (120), Expect = 2e-06
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 517 KYVDVD--IPGKERKTAVYTAVEKGNVPILKLLLTANPDL------EIATKDGDTPLLKA 568
KYV+ ++TA+ ++ + D A + L A
Sbjct: 119 KYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA 178
Query: 569 VKT---RNLEAIQMLIDKKAKITAVDKRGDTVLHIAMRARSKTIVEVFIRNPKNNILLYR 625
VK +L + +I + A G+T LH A +++ ++ L+
Sbjct: 179 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK---GRALVGT 235
Query: 626 PNKAGETPYSIDMNNQ 641
N+AGET I
Sbjct: 236 VNEAGETALDIARKKH 251
Score = 48.7 bits (116), Expect = 4e-06
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 9/126 (7%)
Query: 161 LMFAAQKGKLSFVRELVTRGADVNAE------DNDNWSPLTYAAREGYTD--VCAELL-D 211
L A L V E G D L A + + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 212 HGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGNYHISSLIWAAGRGYTEI 271
+G L+ + G + L +A+ D + LLL A V ++L A + + E
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 272 VALLVK 277
LL +
Sbjct: 256 EELLEQ 261
Score = 37.6 bits (87), Expect = 0.013
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 394 SYGTTPLVWACRKGHVEIVDILLKAGANVDVAGLYCWTPLLVATLGNFTEVVELL 448
+ G T L +A + + +LLK A V T L +A + E ELL
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 31.9 bits (73), Expect = 0.54
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 506 GHRGIVEALLKKYVDVDIPGKERKTAVYTAVEKGNVPILKLLLTANP-DLEIATKDGDTP 564
GH G+ E LLK+ K+ V ++ N+ ++ L DL K +
Sbjct: 130 GHTGVYEDLLKEI------PKDLHEKVLNLIDTKNLAEIEFLSHMKKIDLSRVEKIIEDS 183
Query: 565 LLKAVKTRNLEAIQMLIDKKAKITAVD 591
+ + + + L ++ +
Sbjct: 184 IYR-------RSPEHLKTMDLPLSVRE 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.90
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 30 VEALLKKYVDVDIPGKVRKLSDALNVT 56
++A LK Y D P L A+ T
Sbjct: 25 LQASLKLYADDSAPA----L--AIKAT 45
Score = 29.9 bits (66), Expect = 1.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 321 LWAYMPLYSSALADIFSEPGLATPLTV 347
L A + LY+ D S P LA T+
Sbjct: 25 LQASLKLYA---DD--SAPALAIKATM 46
Score = 29.5 bits (65), Expect = 1.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 511 VEALLKKYVDVDIPGKERKTAVYTAVE 537
++A LK Y D P A+ +E
Sbjct: 25 LQASLKLYADDSAPA----LAIKATME 47
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 31.5 bits (71), Expect = 0.96
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 23/120 (19%)
Query: 358 SFLLPKLKEEMKHFERQGVDPT-FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILL 416
S + ++ +H ++ V F F + +L+ + T +W D
Sbjct: 225 SRIDEQV---HRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLW----------DTYQ 271
Query: 417 KAGA-------NVDVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKDGCTALTIA 469
V A L W ++ +F E++ L P + D+D L A
Sbjct: 272 SEPDGFSHFHLYVCAAFLVRWRKEILEEK-DFQELLLFLQNL-PTAHWDDEDISLLLAEA 329
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 30.9 bits (70), Expect = 1.3
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 23/109 (21%)
Query: 360 LLPKLKEEMKHFERQGVDPTFTFSS---LLFVLVMHLSYGTTPLVWACRKGHVEIVDILL 416
L H E + P+ + +F PL + R + D++
Sbjct: 206 YHRDLY---NHLEEHEIGPSLYAAPWFLTMFASQF-------PLGFVAR-----VFDMIF 250
Query: 417 KAGANV----DVAGLYCWTPLLVATLGNFTEVVELLLEYKPNVNALDKD 461
G V ++ L PL++ N +V+ + PN+ + +
Sbjct: 251 LQGTEVIFKVALSLLGSHKPLILQ-HENLETIVDFIKSTLPNLGLVQME 298
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A
{Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Length = 286
Score = 29.2 bits (65), Expect = 3.9
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 372 ERQGVDPTFTFSSLLFVLVMHLSYG-TTPLVWACRKGHVEIVDILLKAGANVDVAGLYCW 430
+ G+ P L+ L G + K + + L + G V Y
Sbjct: 131 KEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRH 190
Query: 431 TPLLVATLGNFTEVVELLLE 450
P + E +L
Sbjct: 191 LP----DPEGILRLEEAVLR 206
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 29.4 bits (66), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 334 DIFSEPGLATPLTVGLYAKWGSGKSFL 360
+ P + PL +G++ G GKSF
Sbjct: 26 NFLKLPNIKVPLILGIWGGKGQGKSFQ 52
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 29.6 bits (67), Expect = 4.5
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 19/59 (32%)
Query: 271 IVALLVKKGAKVNVGDKVYGTTPLVW-----------ACRKGHVEIVDILLKAGANVDV 318
IV +LV+ G V G LV A G V+ + G V+
Sbjct: 613 IVRVLVEPGQTVEAGA------TLVVLEAMKMEHSIRAPHAGVVK--ALYCSEGELVEE 663
>3d02_A Putative LACI-type transcriptional regulator; periplasmic
sugar-binding protein, structura genomics; HET: MSE GOL;
1.30A {Klebsiella pneumoniae subsp}
Length = 303
Score = 28.9 bits (65), Expect = 5.0
Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 19/120 (15%)
Query: 476 EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLK-KYVDVDIPGKERKTAVYT 534
+A + G Y+ + E V +P E
Sbjct: 119 HMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRR 178
Query: 535 AVEKGNVPILKLLLTANPDLE--IATKDGDTP-LLKAVKTRNLEAIQMLIDKKAKITAVD 591
L+ PDL+ ++ +AVK + + K + +
Sbjct: 179 TTLD--------LMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAK-------NKVAVYGMM 223
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 29.1 bits (65), Expect = 5.5
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 195 TYAAREGYTDVCAELLDHGADLEHRDMGGWSPLMWASYKGHTDTVALLLDKNADVNAHGN 254
Y +G + V LLD +HR++ G + D + + ++HG
Sbjct: 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTR-FHRQASKCDSHGT 76
Query: 255 YHISSLIWAAGRGYTEIVALLVKKGAKVNVGDKV 288
H++ ++ +GR VA KGA + +V
Sbjct: 77 -HLAGVV--SGRDAG--VA----KGASM-RSLRV 100
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target
11229F, transport protein, structural genomics; 2.02A
{Bacillus halodurans c-125}
Length = 305
Score = 28.5 bits (64), Expect = 6.2
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 26/132 (19%)
Query: 476 EIAVLLLNSGAYINIQDRSGDSNLIHAVKGGHRGIVEALLKKYVDVDI----PGKERKTA 531
LL+ + + N G E L ++ +++ G+
Sbjct: 118 YKMAELLDGEGEVAVITLPNQLNHQERTTG----FKETLEAEFPAIEVIAVEDGRGDSLH 173
Query: 532 VYTAVEKGNVPILKLLLTANPDLE--IATKDGDTP-LLKAVKTRNLEAIQMLIDKKAKIT 588
+ LL P+L AT+ + AV+ + + +I
Sbjct: 174 SRRVAHQ--------LLEDYPNLAGIFATEANGGVGVGDAVRLESRA-------GEIQII 218
Query: 589 AVDKRGDTVLHI 600
+ D T+ +
Sbjct: 219 SFDTDKGTLDLV 230
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone,
cytoplasm, disease mutation, nucleus, oncogene,
oxidation, parkinson disease; 1.05A {Homo sapiens} PDB:
1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A*
3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A
2or3_A 3bwe_A 3b38_A 3b36_A ...
Length = 197
Score = 28.3 bits (64), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 303 VEIVDILLKAGANVDVAGL 321
V VD++ +AG V VAGL
Sbjct: 20 VIPVDVMRRAGIKVTVAGL 38
Score = 28.3 bits (64), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 409 VEIVDILLKAGANVDVAGL 427
V VD++ +AG V VAGL
Sbjct: 20 VIPVDVMRRAGIKVTVAGL 38
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein;
2.00A {Drosophila melanogaster}
Length = 190
Score = 28.2 bits (64), Expect = 6.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 303 VEIVDILLKAGANVDVAGL 321
+ D+L +AG V VAGL
Sbjct: 22 IIAADVLRRAGIKVTVAGL 40
Score = 28.2 bits (64), Expect = 6.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 409 VEIVDILLKAGANVDVAGL 427
+ D+L +AG V VAGL
Sbjct: 22 IIAADVLRRAGIKVTVAGL 40
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 28.1 bits (62), Expect = 8.3
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 19/96 (19%)
Query: 358 SFLLPKLKEEMKHFERQGVDPT-FTFSSLLFVLVMHLSYGTTPLVWACRKGHVEIVDILL 416
+ +L H P L + VW D ++
Sbjct: 183 NLEDGRLL---THLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVW----------DKVV 229
Query: 417 KAGAN----VDVAGLYCWTPLLVATLGNFTEVVELL 448
V V L + ++A L + ++ + L
Sbjct: 230 SGSCKILVFVAVEILLTFKIKVMA-LNSAEKITKFL 264
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown
function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Length = 205
Score = 28.0 bits (63), Expect = 8.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 303 VEIVDILLKAGANVDVAGL 321
V +D+L++ G V A +
Sbjct: 19 VTTIDLLVRGGIKVTTASV 37
Score = 28.0 bits (63), Expect = 8.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 409 VEIVDILLKAGANVDVAGL 427
V +D+L++ G V A +
Sbjct: 19 VTTIDLLVRGGIKVTTASV 37
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A
{Vibrio cholerae o1 biovar el tor}
Length = 208
Score = 28.0 bits (63), Expect = 8.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 303 VEIVDILLKAGANVDVAGL 321
V IVD L++AG V +A +
Sbjct: 26 VIIVDTLVRAGFQVTMAAV 44
Score = 28.0 bits (63), Expect = 8.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 409 VEIVDILLKAGANVDVAGL 427
V IVD L++AG V +A +
Sbjct: 26 VIIVDTLVRAGFQVTMAAV 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,957,818
Number of extensions: 634624
Number of successful extensions: 4591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2435
Number of HSP's successfully gapped: 808
Length of query: 651
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 551
Effective length of database: 3,909,693
Effective search space: 2154240843
Effective search space used: 2154240843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)