BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11826
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
G +F C A G PRP I W K +++ ++ F+V E+ G+ ++ + I P T +D
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSV---LRIQPLRTPRDE 76
Query: 62 GYYECVADN 70
YECVA N
Sbjct: 77 AIYECVASN 85
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 4 RKITFFCMAEGFPRPHITWTKD----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
R T C A G P P ITW KD D + Q+ +G ++I+ + +
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG------ALQIEQSEES 177
Query: 60 DAGYYECVADN 70
D G YECVA N
Sbjct: 178 DQGKYECVATN 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQK 59
+ G +F C A G P+P ITW K +++ + F+V E+ G ++ + I P Q+
Sbjct: 19 LSGGVASFVCQATGEPKPRITWMKKGKKVSSQR-FEVIEFDDGAGSV---LRIQPLRVQR 74
Query: 60 DAGYYECVADNPFA 73
D YEC A N
Sbjct: 75 DEAIYECTATNSLG 88
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQK 59
R T C A G P P I+W KD F + N IK ++I+ + +
Sbjct: 124 RTATMLCAAGGNPDPEISWFKD---------FLPVDPATSNGRIKQLRSGALQIESSEES 174
Query: 60 DAGYYECVADN 70
D G YECVA N
Sbjct: 175 DQGKYECVATN 185
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQK 59
+ G +F C A G P+P ITW K +++ + F+V E+ G ++ + I P Q+
Sbjct: 20 LSGGVASFVCQATGEPKPRITWMKKGKKVSSQR-FEVIEFDDGAGSV---LRIQPLRVQR 75
Query: 60 DAGYYECVADNPFA 73
D YEC A N
Sbjct: 76 DEAIYECTATNSLG 89
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQ 58
GR T C A G P P I+W KD F + N IK ++I+ + +
Sbjct: 124 GRTATMLCAAGGNPDPEISWFKD---------FLPVDPAASNGRIKQLRSGALQIESSEE 174
Query: 59 KDAGYYECVADN 70
D G YECVA N
Sbjct: 175 SDQGKYECVATN 186
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 4 RKITFFCMAEGFPRPHITW----TKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+K+ C +G P+PHI W T DI + F +Y V L NN P +
Sbjct: 24 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDF-RYSVVDGSLLINN---------PNKTQ 73
Query: 60 DAGYYECVADNPFA 73
DAG Y+C+A N F
Sbjct: 74 DAGTYQCIATNSFG 87
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C A G P P I W + D + K + H+ +N I +EI Q+DAG
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKA-RRHK----SNGI---LEIPNFQQEDAG 271
Query: 63 YYECVADN 70
YECVA+N
Sbjct: 272 SYECVAEN 279
Score = 33.5 bits (75), Expect = 0.027, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
C A G P+P W K+ L Q+ + + I DAG Y+CVA+
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---------GTLNITIVNLSDAGMYQCVAE 367
Query: 70 NPFAI 74
N +
Sbjct: 368 NKHGV 372
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 4 RKITFFCMAEGFPRPHITW----TKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+K+ C +G P+PHI W T DI + F +Y V L NN P +
Sbjct: 23 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDF-RYSVVDGSLLINN---------PNKTQ 72
Query: 60 DAGYYECVADNPFA 73
DAG Y+C+A N F
Sbjct: 73 DAGTYQCIATNSFG 86
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C A G P P I W + D + K + H+ +N I +EI Q+DAG
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIARKA-RRHK----SNGI---LEIPNFQQEDAG 270
Query: 63 YYECVADN 70
YECVA+N
Sbjct: 271 SYECVAEN 278
Score = 33.5 bits (75), Expect = 0.027, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
C A G P+P W K+ L Q+ + + I DAG Y+CVA+
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---------GTLNITIVNLSDAGMYQCVAE 366
Query: 70 NPFAI 74
N +
Sbjct: 367 NKHGV 371
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C+A G P P I+W D ++ + +QV ++ N + S + I D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 63 YYECVADNPFAI 74
Y+C+A + +
Sbjct: 504 LYKCIAKSKVGV 515
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAGYYEC 66
C A+GFP+P +TW K + T +Y + + ++ I+ + + +D + + GYY C
Sbjct: 736 CKADGFPKPQVTWKK-AVGDTPGEYKDLKK----SDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 67 VADN 70
A N
Sbjct: 791 EAIN 794
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS---KMEIDPATQKDAG 62
+ C A+G+P P W K IE T K + + N+ +K + I A +D+G
Sbjct: 266 MALLCPAQGYPVPVFRWYK-FIEGTTRK-----QAVVLNDRVKQVSGTLIIKDAVVEDSG 319
Query: 63 YYECVADN 70
Y CV +N
Sbjct: 320 KYLCVVNN 327
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C G+P I W +D+ L ++ +V F I +E D
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV---FPNGTLIIENVE----RNSDQA 593
Query: 63 YYECVADNPFAIDRRG 78
Y CVA N RG
Sbjct: 594 TYTCVAKNQEGYSARG 609
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
GR F C G P ++W KD +G++ +S + I+ ++D
Sbjct: 357 FGRPAVFTCQYTGNPIKTVSWMKDGKA-------------IGHS--ESVLRIESVKKEDK 401
Query: 62 GYYECVADN 70
G Y+C N
Sbjct: 402 GMYQCFVRN 410
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
G +F C A G P+P +TW K ++ + F+ E+ + + + + I P T +D
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEF---DESAGAVLRIQPLRTPRDE 76
Query: 62 GYYECVADNP 71
YECVA NP
Sbjct: 77 NIYECVAQNP 86
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQK 59
R T C A G P P ITW KD F + N IK ++I+ + +
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSTSNGRIKQLRSGGLQIESSEET 174
Query: 60 DAGYYECVADNPFAI 74
D G YECVA N +
Sbjct: 175 DQGKYECVASNSAGV 189
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQK 59
R T C A G P P ITW KD F + N IK ++I+ + +
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 60 DAGYYECVADNPFAI 74
D G YECVA N +
Sbjct: 175 DQGKYECVATNSAGV 189
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
G +F C A G P+P +TW K ++ + F+ E+ + + + + I P T +D
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEF---DESAGAVLRIQPLRTPRDE 76
Query: 62 GYYECVADN 70
YECVA N
Sbjct: 77 NVYECVAQN 85
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG+ +T C A+GFP P ++WTKD + + F ++ S++ I + D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKNDE 266
Query: 62 GYYECVADN 70
Y C+A+N
Sbjct: 267 AEYVCIAEN 275
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQK 59
R T C A G P P ITW KD F + N IK ++I+ + +
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 60 DAGYYECVADNPFAI 74
D G YECVA N +
Sbjct: 175 DQGKYECVATNSAGV 189
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
G +F C A G P+P +TW K ++ + F+ E+ + + + + I P T +D
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEF---DESAGAVLRIQPLRTPRDE 76
Query: 62 GYYECVADN 70
YECVA N
Sbjct: 77 NVYECVAQN 85
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ C G P P ++W D + + H+ + N + S + I+P T +DAG
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPV---RPDSAHKMLVRENGVHS-LIIEPVTSRDAG 79
Query: 63 YYECVADN 70
Y C+A N
Sbjct: 80 IYTCIATN 87
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS----KMEIDPATQK 59
R T C A G P P ITW KD F + N IK ++I+ + +
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 60 DAGYYECVADN 70
D G YECVA N
Sbjct: 175 DQGKYECVATN 185
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP-ATQKDAGYYE 65
+F C A G P+P +TW K ++ + F+ E+ + + + + I P T +D YE
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEF---DESAGAVLRIQPLRTPRDENVYE 80
Query: 66 CVADN 70
CVA N
Sbjct: 81 CVAQN 85
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
M G + C+A G P P++ W + +LT V G N ++ KD
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV-----GRNV------LELTDVKD 266
Query: 61 AGYYECVA 68
+ Y CVA
Sbjct: 267 SANYTCVA 274
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G K C G P+P ++W K D L + V E + I ++DAG
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--------SGSLRIHNVQKEDAG 166
Query: 63 YYECVADNPFA 73
Y CVA N
Sbjct: 167 QYRCVAKNSLG 177
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
TF C E +P+P I+WT++ I K F N + + + ++ D G Y C
Sbjct: 26 TFMCAVESYPQPEISWTRNKI---LIKLFDTRYSIRENGQLLTILSVE---DSDDGIYCC 79
Query: 67 VADN 70
A+N
Sbjct: 80 TANN 83
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
++G+++T C A G P P I W K D L+ +W T + ++I + +D
Sbjct: 219 LVGQQVTLECFAFGNPVPRIKWRKVDGSLS-------PQW----TTAEPTLQIPSVSFED 267
Query: 61 AGYYECVADN 70
G YEC A+N
Sbjct: 268 EGTYECEAEN 277
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G + + C A G PRP + W ++ L +V L + SK+ ++ D+
Sbjct: 307 IGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEV----LAGDLRFSKLSLE-----DS 357
Query: 62 GYYECVADN 70
G Y+CVA+N
Sbjct: 358 GMYQCVAEN 366
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
++ C A P W + E+ + H+ GN I ++P +DAG Y
Sbjct: 23 QVLLACRARASPPATYRWKMNGTEMKLEPGSR-HQLVGGNLVI-----MNPTKAQDAGVY 76
Query: 65 ECVADNPF-------AIDRRGFRTDY 83
+C+A NP AI R GF ++
Sbjct: 77 QCLASNPVGTVVSREAILRFGFLQEF 102
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
L + +T C A+GFP P +TWTKD + + + + N S++ I + D
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSF----NYDGSELIIKKVDKSDE 82
Query: 62 GYYECVADN 70
Y C+A+N
Sbjct: 83 AEYICIAEN 91
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+G + C A G P P+I W K+ ++ + + + + FL +I+ + ++D
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL---------QIENSREED 174
Query: 61 AGYYECVADNPFAID 75
G YECVA+N +
Sbjct: 175 QGKYECVAENSMGTE 189
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELT-FHKYFQVHEWFLGNNTIKSKMEIDPA-TQK 59
+G +F+C A G P P I W K+ +++ + V E G S + I+P +
Sbjct: 20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGR 75
Query: 60 DAGYYECVADN 70
D YECVA+N
Sbjct: 76 DDAPYECVAEN 86
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
I F C G P P + W K+ + YFQ+ +G S + I + D G+Y+
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI----VGG----SNLRILGVVKSDEGFYQ 381
Query: 66 CVADN 70
CVA+N
Sbjct: 382 CVAEN 386
Score = 32.3 bits (72), Expect = 0.069, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G+ C G+P P TW + + I+L KY LG S + I T D
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS-----LLGG----SNLLISNVTDDD 286
Query: 61 AGYYECV 67
+G Y CV
Sbjct: 287 SGTYTCV 293
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+G + C A G P P+I W K+ ++ + + + + FL +I+ + ++D
Sbjct: 126 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL---------QIENSREED 176
Query: 61 AGYYECVADNPFAID 75
G YECVA+N +
Sbjct: 177 QGKYECVAENSMGTE 191
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELT-FHKYFQVHEWFLGNNTIKSKMEIDPA-TQK 59
+G +F+C A G P P I W K+ +++ + V E G S + I+P +
Sbjct: 22 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGR 77
Query: 60 DAGYYECVADN 70
D YECVA+N
Sbjct: 78 DDAPYECVAEN 88
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI- 53
LG + F C P+PHI W K IE+ K Y Q+ + G NT +ME+
Sbjct: 130 LGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIGPDNLPYVQILK-TAGVNTTDKEMEVL 187
Query: 54 --DPATQKDAGYYECVADNPFAID 75
+ +DAG Y C+A N +
Sbjct: 188 HLRNVSFEDAGEYTCLAGNSIGLS 211
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ + F C + G P+P + W K+ E F ++ + + T M D D G
Sbjct: 32 AKTVKFKCPSSGTPQPTLRWLKNGKE--FKPDHRIGGYKVRYATWSIIM--DSVVPSDKG 87
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y C+ +N + ++ D
Sbjct: 88 NYTCIVENEYGSINHTYQLD 107
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI- 53
LG + F C P+PHI W K IE+ K Y Q+ + G NT +ME+
Sbjct: 129 LGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIGPDNLPYVQILK-TAGVNTTDKEMEVL 186
Query: 54 --DPATQKDAGYYECVADNPFAID 75
+ +DAG Y C+A N +
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLS 210
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ + F C + G P+P + W K+ E F ++ + + T M D D G
Sbjct: 31 AKTVKFKCPSSGTPQPTLRWLKNGKE--FKPDHRIGGYKVRYATWSIIM--DSVVPSDKG 86
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y C+ +N + ++ D
Sbjct: 87 NYTCIVENEYGSINHTYQLD 106
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI- 53
LG + F C P+PHI W K IE+ K Y Q+ + G NT +ME+
Sbjct: 129 LGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIGPDNLPYVQILK-TAGVNTTDKEMEVL 186
Query: 54 --DPATQKDAGYYECVADNPFAID 75
+ +DAG Y C+A N +
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLS 210
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ + F C + G P P + W K+ E F ++ + + T M D D G
Sbjct: 31 AKTVKFKCPSSGTPNPTLRWLKNGKE--FKPDHRIGGYKVRYATWSIIM--DSVVPSDKG 86
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y C+ +N + ++ D
Sbjct: 87 NYTCIVENEYGSINHTYQLD 106
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G + + C+A G PRP + W +D L +V G SK+ ++ D+
Sbjct: 308 IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLE-----DS 358
Query: 62 GYYECVADN 70
G Y+CVA+N
Sbjct: 359 GMYQCVAEN 367
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G+ +T C A G P P I W K D Q +W + + + I +D
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGS-------QTSKWL----SSEPLLHIQNVDFED 268
Query: 61 AGYYECVADN 70
G YEC A+N
Sbjct: 269 EGTYECEAEN 278
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
K+T C A P W + EL + + G+ I +P KDAG Y
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDSR-YRLVAGDLVIS-----NPVKAKDAGSY 77
Query: 65 ECVADN 70
+CVA N
Sbjct: 78 QCVATN 83
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C EG+P P + W KDD + ++FQ+ GN ++ I D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT----ISEVCGDDDA 111
Query: 63 YYECVADNPFA 73
Y C A N
Sbjct: 112 KYTCKAVNSLG 122
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C EG+P P + W KDD + ++FQ+ GN ++ I D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT----ISEVCGDDDA 111
Query: 63 YYECVADNPFA 73
Y C A N
Sbjct: 112 KYTCKAVNSLG 122
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKD 60
G ++TF C A G P P I+W ++ K + +E ++ G+NT ++ + D
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNG------KLIEENEKYILKGSNT---ELTVRNIINSD 69
Query: 61 AGYYECVADNPFAIDRR 77
G Y C A N D +
Sbjct: 70 GGPYVCRATNKAGEDEK 86
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-----SKMEIDPATQK 59
++T C AEG P P ITW + TF + + G +K S + I
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTF---TEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 60 DAGYYECVA 68
D+G Y+C A
Sbjct: 168 DSGRYDCEA 176
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS---KMEIDPAT 57
M+ I+ C A+GFP P W K IE T K + + N+ +K + I A
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRK-----QAVVLNDRVKQVSGTLIIKDAV 278
Query: 58 QKDAGYYECVADN 70
+D+G Y CV +N
Sbjct: 279 VEDSGKYLCVVNN 291
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
GR F C G P ++W KD +G++ +S + I+ ++D
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKA-------------IGHS--ESVLRIESVKKEDK 365
Query: 62 GYYECVADN 70
G Y+C N
Sbjct: 366 GMYQCFVRN 374
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS---KMEIDPAT 57
M+ I+ C A+GFP P W K IE T K + + N+ +K + I A
Sbjct: 231 MVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRK-----QAVVLNDRVKQVSGTLIIKDAV 284
Query: 58 QKDAGYYECVADN 70
+D+G Y CV +N
Sbjct: 285 VEDSGKYLCVVNN 297
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
GR F C G P ++W KD +G++ +S + I+ ++D
Sbjct: 327 FGRPAVFTCQYTGNPIKTVSWMKDGKA-------------IGHS--ESVLRIESVKKEDK 371
Query: 62 GYYECVADN 70
G Y+C N
Sbjct: 372 GMYQCFVRN 380
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKD 60
G ++TF C A G P P I+W ++ K + +E ++ G+NT ++ + D
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRN------GKLIEENEKYILKGSNT---ELTVRNIINSD 163
Query: 61 AGYYECVADNPFAIDRR 77
G Y C A N D +
Sbjct: 164 GGPYVCRATNKAGEDEK 180
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKD 60
G ++TF C A G P P I+W ++ K + +E ++ G+NT ++ + D
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNG------KLIEENEKYILKGSNT---ELTVRNIINSD 259
Query: 61 AGYYECVADNPFAIDRR 77
G Y C A N D +
Sbjct: 260 GGPYVCRATNKAGEDEK 276
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
+T C++ +I W + L + + + NN+I + IDP ++DAG Y
Sbjct: 127 SVTLTCLSNDI-GANIQWLFNSQSLQLTERMTLSQ----NNSI---LRIDPIKREDAGEY 178
Query: 65 ECVADNPFAIDR 76
+C NP ++ R
Sbjct: 179 QCEISNPVSVRR 190
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ C +P I+W +D L Y + + N S +E+ P ++ D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK---IYNTPSASYLEVTPDSENDFG 89
Query: 63 YYECVADN 70
Y C A N
Sbjct: 90 NYNCTAVN 97
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
+T C++ +I W + L + + + NN+I + IDP ++DAG Y
Sbjct: 127 SVTLTCLSNDI-GANIQWLFNSQSLQLTERMTLSQ----NNSI---LRIDPIKREDAGEY 178
Query: 65 ECVADNPFAIDR 76
+C NP ++ R
Sbjct: 179 QCEISNPVSVRR 190
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73
G P P ITW K + + ++QV + + S + + +KDAG+Y A N F
Sbjct: 130 GKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 74 IDRRGFRTD 82
ID++ D
Sbjct: 186 IDQKTVELD 194
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G ++ G P P ITW K + + ++QV + + S + + +KD
Sbjct: 115 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKD 170
Query: 61 AGYYECVADNPFAIDRRGFRTD 82
AG+Y A N F ID++ D
Sbjct: 171 AGFYVVCAKNRFGIDQKTVELD 192
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G ++ G P P ITW K + + ++QV + + S + + +KD
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKD 172
Query: 61 AGYYECVADNPFAIDRRGFRTD 82
AG+Y A N F ID++ D
Sbjct: 173 AGFYVVCAKNRFGIDQKTVELD 194
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG TF C G ITW KD+ E+ +++ L NT + + + T+ DA
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT---LVENT--ATLTVLKVTKGDA 265
Query: 62 GYYECVADN 70
G Y C A N
Sbjct: 266 GQYTCYASN 274
Score = 33.5 bits (75), Expect = 0.036, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G IT C +G P I W K+ +L +++ NN + + I+ D
Sbjct: 19 IGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQ---FKNNV--ASLVINKVDHSDV 73
Query: 62 GYYECVADN 70
G Y C A+N
Sbjct: 74 GEYTCKAEN 82
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQV-HEWFLGNNTIKSKMEIDPATQKDA 61
G + C +G P ++W KD EL K +++ E FL + I + +D A D
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI---LNVDSA---DI 452
Query: 62 GYYECVADNPFAID 75
G Y+C A N D
Sbjct: 453 GEYQCKASNDVGSD 466
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG + F C G ++W KD L Q F+ N ++ D Q
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS--FIHNVATLQILQTD---QSHV 169
Query: 62 GYYECVADNPFA 73
G Y C A NP
Sbjct: 170 GQYNCSASNPLG 181
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
C G P + W KD+ E+ F++ F+ + + +E+ + +D+G Y C A
Sbjct: 313 CKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESVAV---LEMYNLSVEDSGDYTCEAH 367
Query: 70 N 70
N
Sbjct: 368 N 368
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 33.5 bits (75), Expect = 0.036, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P I+W K+ E E +G ++ + + ++ D G
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFR-------GEHRIGGIKLRHQQWSLVMESVVPSDRG 193
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N F R+ + D
Sbjct: 194 NYTCVVENKFGSIRQTYTLD 213
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI 53
+LG + F C +PHI W K +E+ K Y V + G NT ++E+
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLK-HVEVNGSKVGPDGTPYVTVLK-TAGANTTDKELEV 292
Query: 54 ---DPATQKDAGYYECVADN 70
T +DAG Y C+A N
Sbjct: 293 LSLHNVTFEDAGEYTCLAGN 312
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ F C A G P P I+W K+ E F ++ L + ME D G Y
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGRE--FRGEHRIGGIKLRHQQWSLVME--SVVPSDRGNYT 88
Query: 66 CVADNPFAIDRRGFRTD 82
CV +N F R+ + D
Sbjct: 89 CVVENKFGSIRQTYTLD 105
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQV-HEWFLGNNTIKSKME 52
+LG + F C +PHI W K +E+ K Y V W + ++
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLK-HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 53 IDPATQKDAGYYECVADNPFAIDRRGF 79
+ +++D G Y C A N + + F
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAF 212
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKME-- 52
++G + F C +PHI W K +E KY +L G NT ++E
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 53 -IDPATQKDAGYYECVADNPFAID 75
I T +DAG Y C+A N I
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ F C A G P P + W K+ E F + ++ + + N ME D G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYT 84
Query: 66 CVADNPFAIDRRGFRTD 82
CV +N + + D
Sbjct: 85 CVVENEYGSINHTYHLD 101
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHE----WFLGNNTIKSKMEIDPATQKDAGY 63
F A G PRP WTKD +T +++ E +FL EI D+G
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL---------EIHKTDTSDSGL 76
Query: 64 YECVADN 70
Y C N
Sbjct: 77 YTCTVKN 83
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKME-- 52
++G + F C +PHI W K +E KY +L G NT ++E
Sbjct: 121 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 179
Query: 53 -IDPATQKDAGYYECVADNPFAID 75
I T +DAG Y C+A N I
Sbjct: 180 YIRNVTFEDAGEYTCLAGNSIGIS 203
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ F C A G P P + W K+ E F + ++ + + N ME D G Y
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYT 82
Query: 66 CVADNPFAIDRRGFRTD 82
CV +N + + D
Sbjct: 83 CVVENEYGSINHTYHLD 99
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKME-- 52
++G + F C +PHI W K +E KY +L G NT ++E
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 53 -IDPATQKDAGYYECVADNPFAID 75
I T +DAG Y C+A N I
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P W K+ E E +G ++++ + + D G
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 82 NYTCVVENEYGSINHTYHLD 101
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKME-- 52
++G + F C +PHI W K +E KY +L G NT ++E
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 53 -IDPATQKDAGYYECVADNPFAID 75
I T +DAG Y C+A N I
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ F C A G P P + W K+ E F + ++ + + N ME D G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYT 84
Query: 66 CVADNPFAIDRRGFRTD 82
CV +N + + D
Sbjct: 85 CVVENEYGSINHTYHLD 101
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKME-- 52
++G + F C +PHI W K +E KY +L G NT ++E
Sbjct: 122 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 180
Query: 53 -IDPATQKDAGYYECVADNPFAID 75
I T +DAG Y C+A N I
Sbjct: 181 YIRNVTFEDAGEYTCLAGNSIGIS 204
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ F C A G P P + W K+ E F + ++ + + N ME D G Y
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYT 83
Query: 66 CVADNPFAIDRRGFRTD 82
CV +N + + D
Sbjct: 84 CVVENEYGSINHTYHLD 100
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 33.1 bits (74), Expect = 0.045, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG TF C G ITW KD+ E+ +++ L NT + + + T+ DA
Sbjct: 19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT---LVENT--ATLTVLKVTKGDA 73
Query: 62 GYYECVADN 70
G Y C A N
Sbjct: 74 GQYTCYASN 82
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQV-HEWFLGNNTIKSKMEIDPATQKDA 61
G + C +G P ++W KD EL K +++ E FL + I + +D A D
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI---LNVDSA---DI 260
Query: 62 GYYECVADN 70
G Y+C A N
Sbjct: 261 GEYQCKASN 269
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
C G P + W KD+ E+ F++ F+ + + +E+ + +D+G Y C A
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESVAV---LEMYNLSVEDSGDYTCEAH 175
Query: 70 N 70
N
Sbjct: 176 N 176
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG TF C G ITW KD+ E+ +++ L NT + + + T+ DA
Sbjct: 19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT---LVENT--ATLTVLKVTKGDA 73
Query: 62 GYYECVADN 70
G Y C A N
Sbjct: 74 GQYTCYASN 82
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQV-HEWFLGNNTIKSKMEIDPATQKDA 61
G + C +G P ++W KD EL K +++ E FL + I + +D A D
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI---LNVDSA---DI 260
Query: 62 GYYECVADN 70
G Y+C A N
Sbjct: 261 GEYQCKASN 269
Score = 25.4 bits (54), Expect = 9.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
C G P + W KD+ E+ F++ F+ + + +E+ + +D+G Y C A
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESVAV---LEMYNLSVEDSGDYTCEAH 175
Query: 70 N 70
N
Sbjct: 176 N 176
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITW-----TKDDIELTF---HKYFQVHEWFLGNNTIKSKMEI 53
+G + C A G P P I W +DI + +VH + S + I
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 54 DPATQKDAGYYECVADN 70
D ++D G YEC A N
Sbjct: 95 DTLVEEDTGTYECRASN 111
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKME-- 52
++G + F C +PHI W K +E KY +L G NT ++E
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 53 -IDPATQKDAGYYECVADNPFAID 75
I T +DAG Y C+A N I
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ F C A G P P + W K+ E F + ++ + + N ME D G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYT 84
Query: 66 CVADNPFAIDRRGFRTD 82
CV +N + + D
Sbjct: 85 CVVENEYGSINHTYHLD 101
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C +G P P +TW + L+ QV KS EI D G
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-----TTKYKSTFEISSVQASDEG 77
Query: 63 YYECVADN 70
Y V +N
Sbjct: 78 NYSVVVEN 85
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C +G P P +TW + L+ QV KS EI D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-----TTKYKSTFEISSVQASDEG 83
Query: 63 YYECVADN 70
Y V +N
Sbjct: 84 NYSVVVEN 91
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G I C + P I W +D + L + + G I +EI P + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDFG 171
Query: 63 YYECVADN 70
Y C A N
Sbjct: 172 RYNCTATN 179
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME-----------I 53
++T C AEG P P ITW + TF + G+ ++ ++E I
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTE---------GDKSLDGRIEVKGQHGSSSLHI 67
Query: 54 DPATQKDAGYYECVA 68
D+G Y+C A
Sbjct: 68 KDVKLSDSGRYDCEA 82
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.3 bits (72), Expect = 0.075, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G I C + P I W +D + L + + G I +EI P + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDFG 171
Query: 63 YYECVADN 70
Y C A N
Sbjct: 172 RYNCTATN 179
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-----SKMEIDPATQK 59
++T C AEG P P ITW + TF + + + G +K S + I
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLD---GRIEVKGQHGSSSLHIKDVKLS 73
Query: 60 DAGYYECVA 68
D+G Y+C A
Sbjct: 74 DSGRYDCEA 82
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK--MEIDPATQKDAGYYECVADNP 71
G+P P I W K+ I L N+TIK+ + I +++D G Y + NP
Sbjct: 226 GYPPPEIKWYKNGIPLE------------SNHTIKAGHVLTIMEVSERDTGNYTVILTNP 273
Query: 72 FAIDRR 77
+ +++
Sbjct: 274 ISKEKQ 279
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK--MEIDPATQKDAGYYECVADNP 71
G+P P I W K+ I L N+TIK+ + I +++D G Y + NP
Sbjct: 356 GYPPPEIKWYKNGIPLE------------SNHTIKAGHVLTIMEVSERDTGNYTVILTNP 403
Query: 72 FAIDRR 77
+ +++
Sbjct: 404 ISKEKQ 409
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G I C A G P P I W KD+ L + + GN + I ++D
Sbjct: 680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRN----LTIRRVRKEDE 732
Query: 62 GYYECVA 68
G Y C A
Sbjct: 733 GLYTCQA 739
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 32.0 bits (71), Expect = 0.088, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS---KMEIDPATQ 58
L + CMA+ +P P W K IE T K + + N+ +K + I A
Sbjct: 229 LASSYSLLCMAQSYPTPSFRWYK-FIEGTTRK-----QAVVLNDRVKQVSGTLIIKDAVV 282
Query: 59 KDAGYYECVADN 70
+D+G Y CV +N
Sbjct: 283 EDSGKYLCVVNN 294
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
GR F C G P ++W KD +G++ +S + I+ ++D
Sbjct: 324 FGRPAVFTCQYTGNPIKTVSWMKDGKA-------------IGHS--ESVLRIESVKKEDK 368
Query: 62 GYYECVADN 70
G Y+C N
Sbjct: 369 GMYQCFVRN 377
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITW-----TKDDIELTF---HKYFQVHEWFLGNNTIKSKMEI 53
+G + C A G P P I W +DI + +VH + S + I
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 54 DPATQKDAGYYECVADN 70
D ++D G YEC A N
Sbjct: 95 DTLVEEDTGTYECRASN 111
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +TF C G P+P I W KD +++ ++ + G ++ + +T D
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTA----STLDDD 78
Query: 62 GYYECVADNP 71
G Y +A NP
Sbjct: 79 GNYTIMAANP 88
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +TF C G P+P I W KD +++ ++ + G ++ + +T D
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTA----STLDDD 77
Query: 62 GYYECVADNP 71
G Y +A NP
Sbjct: 78 GNYTIMAANP 87
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 8 FFCMAEGFPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
C+A G P P I W KD + ++ + Q+ L +I A D G Y
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL---------QIRYAKLGDTGRYT 78
Query: 66 CVADNP 71
C+A P
Sbjct: 79 CIASTP 84
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G TF GFP P ++W +D ++ V F ++K+ I T+ ++G
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG---RAKLTIPAVTKANSG 76
Query: 63 YYECVADN 70
Y A N
Sbjct: 77 RYSLKATN 84
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG C G P P I W + EL Q ++ + ++ + + Q+D
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKEL-----IQSRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 62 GYYECVADN 70
G Y C+A N
Sbjct: 76 GVYTCIATN 84
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G TF GFP P ++W +D ++ V F ++K+ I T+ ++G
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG---RAKLTIPAVTKANSG 76
Query: 63 YYECVADN 70
Y A N
Sbjct: 77 RYSLKATN 84
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G I C A G P P I W KD+ L + + GN + I ++D
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNR----NLTIRRVRKEDE 76
Query: 62 GYYECVA 68
G Y C A
Sbjct: 77 GLYTCQA 83
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFH----KYFQVHEWFLGNNTIKSKMEIDPA 56
+G + C + G P TW KD I + + + F + L N ++ DP
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL--NPTTGELVFDPL 178
Query: 57 TQKDAGYYECVADNPFA 73
+ D G Y C A N +
Sbjct: 179 SASDTGEYSCEARNGYG 195
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELT 30
M G + C+A G P PH W K+++ LT
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G+ + C A G P W K + E+ N S++ + KD
Sbjct: 31 LAGQFVKLCCRATGHPFVQYQWFKMNKEIP--------------NGNTSELIFNAVHVKD 76
Query: 61 AGYYECVADNPFAID 75
AG+Y C +N F +
Sbjct: 77 AGFYVCRVNNNFTFE 91
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELT 30
M G + C+A G P PH W K+++ LT
Sbjct: 16 MPGSTLVLQCVAVGSPIPHYQWFKNELPLT 45
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
++G+ +T C A G P P I W K + +T + ++I +D
Sbjct: 126 LMGQNVTLECFALGNPVPDIRW---------RKVLEPMPSTAEISTSGAVLKIFNIQLED 176
Query: 61 AGYYECVADN 70
G YEC A+N
Sbjct: 177 EGIYECEAEN 186
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + C+A G P P I W K +L K F+ + I +++D+
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE---------NFNKALRITNVSEEDS 287
Query: 62 GYYECVADN 70
G Y C+A N
Sbjct: 288 GEYFCLASN 296
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C AEG P P +TW + T + F+ + + S+ + P+ +
Sbjct: 133 GLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSR----SAAVTSEFHLVPSRSMNGQ 188
Query: 63 YYECVADNP 71
CV +P
Sbjct: 189 PLTCVVSHP 197
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPAT 57
+G + C +G P +W KD I + + + + TI K + DP T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 58 QKDAGYYECVADNPFAIDRR 77
D+G Y C A N + R
Sbjct: 178 AFDSGEYYCQAQNGYGTAMR 197
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-SKMEIDPATQKDA 61
G+ +T C G P P++ W+ + L+ G T+ S + I D
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPLSG-----------GRATVTDSGLVIKGVKNGDK 372
Query: 62 GYYECVADN 70
GYY C A N
Sbjct: 373 GYYGCRATN 381
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI--KSKMEIDPATQKD 60
G + F C A+G P P I W L K G T+ +E+ A +D
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN-------GRLTVFPDGTLEVRYAQVQD 452
Query: 61 AGYYECVADN 70
G Y C+A N
Sbjct: 453 NGTYLCIAAN 462
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
++ ++ A PR ++TW K+D T + W + + PA Q+D+G Y
Sbjct: 42 QVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-----AQDGALWLLPALQEDSGTY 96
Query: 65 ECVADNPFAIDR 76
C N D+
Sbjct: 97 VCTTRNASYCDK 108
>pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
pdb|1L0Y|C Chain C, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
Length = 236
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 137 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 180
Query: 64 YECVAD 69
C++
Sbjct: 181 SYCLSS 186
>pdb|1JCK|A Chain A, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|C Chain C, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1SBB|A Chain A, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|C Chain C, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1L0X|A Chain A, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1L0X|C Chain C, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1BEC|A Chain A, Beta Chain Of A T Cell Antigen Receptor
Length = 238
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 137 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 180
Query: 64 YECVAD 69
C++
Sbjct: 181 SYCLSS 186
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P + W K+ E E +G ++++ + ++ D G
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 79 NYTCVVENEYGSINHTYHLD 98
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P + W K+ E E +G ++++ + ++ D G
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 83 NYTCVVENEYGSINHTYHLD 102
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P + W K+ E E +G ++++ + ++ D G
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 84 NYTCVVENEYGSINHTYHLD 103
>pdb|3C6L|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 236
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 135 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 178
Query: 64 YECVAD 69
C++
Sbjct: 179 SYCLSS 184
>pdb|1TCR|B Chain B, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|B Chain B, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|D Chain D, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|B Chain B, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|D Chain D, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|B Chain B, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|D Chain D, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 237
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 135 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 178
Query: 64 YECVAD 69
C++
Sbjct: 179 SYCLSS 184
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P + W K+ E E +G ++++ + ++ D G
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 90 NYTCVVENEYGSINHTYHLD 109
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI 53
++G + F C +PHI W K +E K Y +V + N++ + +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 189
Query: 54 DPATQKDAGYYECVADN 70
T+ DAG Y C N
Sbjct: 190 FNVTEADAGEYICKVSN 206
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
T C EG P P I W KD ++ ++ + H + + + ++D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEK-KSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 VADN 70
VA N
Sbjct: 87 VAKN 90
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 13 EGFPRPHITWTKDDIEL------TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
+G P P + W KD + L +F +V GN I + ++P D G Y+C
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN---VEPI---DEGNYKC 187
Query: 67 VADN 70
+A N
Sbjct: 188 IAQN 191
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
T C EG P P I W KD ++ ++ + H + + + ++D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEK-KSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 VADN 70
VA N
Sbjct: 87 VAKN 90
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 13 EGFPRPHITWTKDDIEL------TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
+G P P + W KD + L +F +V GN I + ++P D G Y+C
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN---VEPI---DEGNYKC 187
Query: 67 VADN 70
+A N
Sbjct: 188 IAQN 191
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P + W K+ E E +G ++++ + ++ D G
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 90 NYTCVVENEYGSINHTYHLD 109
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI 53
++G + F C +PHI W K +E K Y +V + N++ + +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 189
Query: 54 DPATQKDAGYYECVADN 70
T+ DAG Y C N
Sbjct: 190 FNVTEADAGEYICKVSN 206
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
G+ F+C P +TW KDD EL + K + +++ L N +K
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG--------- 547
Query: 59 KDAGYYECVADNPFA 73
D G Y A N +
Sbjct: 548 DDKGEYTVRAKNSYG 562
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTI-KSKMEIDPATQKD 60
G T C AEG P P I W K + K + H L + ++ ++ ++ D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 61 AGYYECVADN 70
G Y CVA N
Sbjct: 84 EGVYVCVARN 93
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ C G P P ITW + + + + +++ I A +D G
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARST--------CEAGVAELHIQDALPEDHG 77
Query: 63 YYECVADNPFA 73
Y C+A+N
Sbjct: 78 TYTCLAENALG 88
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTI-KSKMEIDPATQKD 60
G T C AEG P P I W K + K + H L + ++ ++ ++ D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 61 AGYYECVADN 70
G Y CVA N
Sbjct: 84 EGVYVCVARN 93
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With
Interleukin-1 Beta
Length = 315
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 16 PRPH---ITWTKDDIE--LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
P H ITW KDD + ++ + ++H+ K K+ PA +D+G+Y CV N
Sbjct: 31 PNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYCVVRN 83
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + C P P + W +++ + F+ +++ +NT + + I +KDA
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDA 85
Query: 62 GYYECVADNPFAIDRRGFRTD 82
G+Y A N + R D
Sbjct: 86 GWYTVSAVNEAGVTTCNTRLD 106
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human
Il-1beta And Il-1ra, Bound To Human Interleukin-1
Receptor Type 1
Length = 319
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 16 PRPH---ITWTKDDIE--LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
P H ITW KDD + ++ + ++H+ K K+ PA +D+G+Y CV N
Sbjct: 31 PNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYCVVRN 83
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 16 PRPH---ITWTKDDIE--LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
P H ITW KDD + ++ + ++H+ K K+ PA +D+G+Y CV N
Sbjct: 28 PNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYCVVRN 80
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKD--DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G+ + +G P+P ++W ++ + ++ + E L ++ I A + D
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL------CRLRILAAERGD 73
Query: 61 AGYYECVADNPFA 73
AG+Y C A N +
Sbjct: 74 AGFYTCKAVNEYG 86
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 16 PRPH---ITWTKDDIE--LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
P H ITW KDD + ++ + ++H+ K K+ PA +D+G+Y CV N
Sbjct: 33 PNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYCVVRN 85
>pdb|2ATM|A Chain A, Crystal Structure Of The Recombinant Allergen Ves V 2
Length = 331
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 19 HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
H TW K IEL K F+ + F T+ K+ Q D GYY
Sbjct: 137 HPTWNKKXIELEASKRFEKYARFFMEETL--KLAKKTRKQADWGYY 180
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 3 GRKITFFCMAEGFPRPHITWTK------DDIELTFHKYFQVH-EWFLGNNTIKSKMEIDP 55
G+ +C + G+P P W K ++I + ++F ++ E + N + ++ DP
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDP 166
Query: 56 ATQKDAGYYECVADNPFA 73
G YEC A N
Sbjct: 167 ------GEYECNATNSIG 178
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G +T C P P I W KD + L EI P +D G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-----------LILPEIGP---QDQG 70
Query: 63 YYECVA 68
Y CVA
Sbjct: 71 TYSCVA 76
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEW-FLGNNTIKSKMEIDPATQK 59
G+ + C EG P I W KD ++ Y V E ++G ++KS +
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS------VERS 70
Query: 60 DAGYYECVADN 70
DAG Y C ++
Sbjct: 71 DAGRYWCQVED 81
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G +T C P P I W KD + L EI P +D G
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-----------LILPEIGP---QDQG 63
Query: 63 YYECVA 68
Y CVA
Sbjct: 64 TYSCVA 69
>pdb|3QVE|A Chain A, Crystal Structure Of Human Hmg Box-Containing Protein 1,
Hbp1
pdb|3QVE|B Chain B, Crystal Structure Of Human Hmg Box-Containing Protein 1,
Hbp1
pdb|3QVE|C Chain C, Crystal Structure Of Human Hmg Box-Containing Protein 1,
Hbp1
Length = 139
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 12 AEGFPRPHITWTKDDIELTFHKYFQV-------HEWFLGNNTIKSKMEIDPATQKDAGY- 63
E F R ++D+++ HK + HE + K+ DP T +D
Sbjct: 31 VEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLT 90
Query: 64 YECVADNPFAIDRRGFRTDY 83
EC D+PF + +G+ + Y
Sbjct: 91 VECKLDHPFYVKNKGWSSFY 110
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 3 GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +TF C A+ P + WT+ H ++ + N I + + P+ DA
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTR------LHN-GKLPSRAMDFNGILTIRNVQPS---DA 74
Query: 62 GYYECVADNPFAIDR 76
G Y C N FA+D+
Sbjct: 75 GTYVCTGSNMFAMDQ 89
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 8 FFCMAEGFPRPHITWTKDD 26
C AEG+P+ + WT D
Sbjct: 136 LTCQAEGYPKAEVIWTSSD 154
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 8 FFCMAEGFPRPHITWTKDD 26
C AEG+P+ + WT D
Sbjct: 136 LTCQAEGYPKAEVIWTSSD 154
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 8 FFCMAEGFPRPHITWTKDD 26
C AEG+P+ + WT D
Sbjct: 136 LTCQAEGYPKAEVIWTSSD 154
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
G+ F+C P +TW KDD EL + K + +++ L N +K
Sbjct: 391 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG--------- 441
Query: 59 KDAGYYECVADNPFA 73
D G Y A N +
Sbjct: 442 DDKGEYTVRAKNSYG 456
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVHEWFLGNNTIKSKMEI 53
++G + F C +PHI W K +E K Y +V + N++ + +
Sbjct: 130 VVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 188
Query: 54 DPATQKDAGYYECVADN 70
T+ DAG Y C N
Sbjct: 189 FNVTEADAGEYICKVSN 205
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
+ F C A G P P W K+ E E +G ++++ + + D G
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 63 YYECVADNPFAIDRRGFRTD 82
Y CV +N + + D
Sbjct: 89 NYTCVVENEYGSINHTYHLD 108
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ +T C G P P +TW+ ++ + + H + N + + I ++D G
Sbjct: 22 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFH---IENTDDLTTLIIMDVQKQDGG 78
Query: 63 YYECVADNPFAID 75
Y N F D
Sbjct: 79 LYTLSLGNEFGSD 91
>pdb|2Q86|B Chain B, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|D Chain D, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 254
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 16/65 (24%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 135 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVCTDPQAYKESNY 178
Query: 64 YECVA 68
C++
Sbjct: 179 SYCLS 183
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + CM + I+WTKD + L + + I ++I AT +D+G
Sbjct: 16 GESLELQCMLK--DAAVISWTKDGVHLGPNNRTVL---------IGEYLQIKGATPRDSG 64
Query: 63 YYECVA 68
Y C A
Sbjct: 65 LYACTA 70
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ +T C G P P +TW+ ++ + + H + N + + I ++D G
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFH---IENTDDLTTLIIMDVQKQDGG 76
Query: 63 YYECVADNPFAIDR 76
Y N F D
Sbjct: 77 LYTLSLGNEFGSDS 90
>pdb|1V06|A Chain A, Axh Domain Of The Transcription Factor Hbp1 From
M.Musculus
Length = 142
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 12 AEGFPRPHITWTKDDIELTFHKYFQV-------HEWFLGNNTIKSKMEIDPATQKDAGY- 63
E F R +++I++ HK + HE + K+ DP T +D
Sbjct: 31 VEDFARAASCDNEEEIQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLT 90
Query: 64 YECVADNPFAIDRRGFRTDY 83
EC D+PF + +G+ + Y
Sbjct: 91 VECKLDHPFYVKNKGWSSFY 110
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIEL 29
+G ++ +G PRP + WTK L
Sbjct: 38 VGEQLNLVVPFQGKPRPQVVWTKGGAPL 65
>pdb|1LP9|F Chain F, Xenoreactive Complex Ahiii 12.2 Tcr Bound To P1049HLA-A2.1
pdb|1LP9|M Chain M, Xenoreactive Complex Ahiii 12.2 Tcr Bound To P1049HLA-A2.1
pdb|2J8U|F Chain F, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation.
pdb|2J8U|M Chain M, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation.
pdb|2JCC|F Chain F, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2JCC|M Chain M, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2UWE|F Chain F, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
pdb|2UWE|M Chain M, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
Length = 238
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 138 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 181
>pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
pdb|1C8U|B Chain B, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
Length = 285
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFL 42
GF P I D + FH+ F ++EW L
Sbjct: 217 GFLEPGIQIATIDHSMWFHRPFNLNEWLL 245
>pdb|3Q5Y|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|B Chain B, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|C Chain C, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|D Chain D, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 240
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 138 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 181
>pdb|1NFD|B Chain B, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|D Chain D, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 239
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 137 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 180
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
+K T C+A GF D +EL+ W++ + S + DP K++ Y
Sbjct: 139 QKATLVCLARGF-------FPDHVELS---------WWVNGKEVHSGVSTDPQAYKESNY 182
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 15/45 (33%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
GFP PH++W ++ EL N I + + DP T+
Sbjct: 133 GFPEPHLSWLENGEEL---------------NAINTTVSQDPETE 162
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 15/45 (33%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
GFP PH++W ++ EL N I + + DP T+
Sbjct: 133 GFPEPHLSWLENGEEL---------------NAINTTVSQDPETE 162
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ + C G P P ++W K++ L + + F T + I+ + D+G
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLK--FEAGRT--AYFTINGVSTADSG 292
Query: 63 YYECVADNPFAIDRRGF 79
Y V N + + F
Sbjct: 293 KYGLVVKNKYGSETSDF 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,848,767
Number of Sequences: 62578
Number of extensions: 103677
Number of successful extensions: 782
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 200
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)