Query psy11826
Match_columns 83
No_of_seqs 107 out of 1833
Neff 12.2
Searched_HMMs 46136
Date Fri Aug 16 19:59:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05855 Ig_TrkB_d5 Fifth domai 99.9 3.6E-20 7.8E-25 80.4 10.1 76 8-83 3-78 (79)
2 cd05745 Ig3_Peroxidasin Third 99.9 2.3E-20 5E-25 80.5 8.7 74 2-83 1-74 (74)
3 cd05852 Ig5_Contactin-1 Fifth 99.8 5.8E-20 1.3E-24 79.0 8.8 72 3-82 1-72 (73)
4 cd04975 Ig4_SCFR_like Fourth i 99.8 2E-19 4.3E-24 81.5 10.3 81 2-82 17-98 (101)
5 cd05735 Ig8_DSCAM Eight immuno 99.8 7E-19 1.5E-23 78.0 11.3 79 3-82 1-80 (88)
6 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 1.3E-18 2.9E-23 76.9 11.3 77 2-83 9-86 (86)
7 cd05892 Ig_Myotilin_C C-termin 99.8 7.8E-19 1.7E-23 75.8 10.1 74 6-83 1-75 (75)
8 cd05737 Ig_Myomesin_like_C C-t 99.8 9.1E-19 2E-23 78.3 10.3 77 2-82 15-91 (92)
9 cd04971 Ig_TrKABC_d5 Fifth dom 99.8 1.1E-18 2.4E-23 76.3 10.2 76 8-83 3-80 (81)
10 cd05762 Ig8_MLCK Eighth immuno 99.8 8.8E-19 1.9E-23 79.1 9.8 76 2-82 14-89 (98)
11 cd05859 Ig4_PDGFR-alpha Fourth 99.8 4.9E-19 1.1E-23 80.2 8.7 81 2-82 17-98 (101)
12 cd05744 Ig_Myotilin_C_like Imm 99.8 3.2E-18 7E-23 73.9 10.5 74 6-83 1-75 (75)
13 cd05893 Ig_Palladin_C C-termin 99.8 2.3E-18 4.9E-23 74.3 10.0 74 6-83 1-75 (75)
14 cd05723 Ig4_Neogenin Fourth im 99.8 1.5E-18 3.2E-23 74.3 9.3 71 5-83 1-71 (71)
15 cd05867 Ig4_L1-CAM_like Fourth 99.8 2.4E-18 5.2E-23 74.5 9.9 74 3-82 1-74 (76)
16 cd04969 Ig5_Contactin_like Fif 99.8 1.1E-18 2.3E-23 75.1 8.8 72 3-82 1-72 (73)
17 cd05748 Ig_Titin_like Immunogl 99.8 5.4E-18 1.2E-22 73.0 10.9 74 5-83 1-74 (74)
18 cd05869 Ig5_NCAM-1 Fifth immun 99.8 2.1E-18 4.6E-23 77.8 9.6 82 2-83 16-97 (97)
19 cd05863 Ig2_VEGFR-3 Second imm 99.8 6E-19 1.3E-23 74.5 7.2 63 6-81 1-63 (67)
20 cd05851 Ig3_Contactin-1 Third 99.8 1E-18 2.2E-23 77.6 8.3 72 2-82 15-86 (88)
21 cd05857 Ig2_FGFR Second immuno 99.8 1.2E-17 2.6E-22 73.6 11.4 78 2-83 8-85 (85)
22 cd05868 Ig4_NrCAM Fourth immun 99.8 3.9E-18 8.5E-23 73.8 9.2 74 3-82 1-74 (76)
23 cd05747 Ig5_Titin_like M5, fif 99.8 9.4E-18 2E-22 75.0 10.4 75 2-81 17-91 (92)
24 cd05732 Ig5_NCAM-1_like Fifth 99.8 6.8E-18 1.5E-22 75.9 9.9 81 2-82 15-95 (96)
25 cd05746 Ig4_Peroxidasin Fourth 99.8 1.6E-18 3.5E-23 73.8 7.4 68 6-81 1-68 (69)
26 cd04972 Ig_TrkABC_d4 Fourth do 99.8 1.5E-17 3.3E-22 74.0 10.2 76 2-82 14-89 (90)
27 cd05730 Ig3_NCAM-1_like Third 99.8 8.3E-18 1.8E-22 75.5 9.0 74 2-82 17-91 (95)
28 cd05743 Ig_Perlecan_D2_like Im 99.8 1E-17 2.2E-22 72.8 8.8 72 3-79 1-72 (78)
29 cd04978 Ig4_L1-NrCAM_like Four 99.8 1.8E-17 3.8E-22 71.7 9.4 74 3-82 1-74 (76)
30 cd05728 Ig4_Contactin-2-like F 99.8 1.5E-17 3.3E-22 73.3 9.3 72 2-82 13-84 (85)
31 cd05773 Ig8_hNephrin_like Eigh 99.8 4.5E-17 9.7E-22 74.8 11.1 80 2-82 22-103 (109)
32 cd05876 Ig3_L1-CAM Third immun 99.8 4E-18 8.6E-23 72.9 7.1 69 6-82 1-69 (71)
33 cd05856 Ig2_FGFRL1-like Second 99.8 1.2E-17 2.7E-22 73.0 8.7 75 2-83 8-82 (82)
34 cd05739 Ig3_RPTP_IIa_LAR_like 99.8 2.2E-17 4.7E-22 70.3 9.1 68 3-81 1-68 (69)
35 cd04976 Ig2_VEGFR Second immun 99.8 6.4E-18 1.4E-22 72.3 7.5 68 6-82 1-68 (71)
36 cd05870 Ig5_NCAM-2 Fifth immun 99.8 1.7E-17 3.6E-22 74.9 9.2 76 2-82 15-97 (98)
37 cd05865 Ig1_NCAM-1 First immun 99.8 4.2E-17 9E-22 73.3 10.2 77 2-82 14-94 (96)
38 cd05891 Ig_M-protein_C C-termi 99.8 4.4E-17 9.6E-22 72.8 10.3 78 1-82 14-91 (92)
39 cd05864 Ig2_VEGFR-2 Second imm 99.8 5.1E-18 1.1E-22 72.3 6.8 63 6-78 1-63 (70)
40 cd05764 Ig_2 Subgroup of the i 99.8 4.7E-17 1E-21 70.1 9.6 72 3-82 1-73 (74)
41 PF07679 I-set: Immunoglobulin 99.8 4.6E-17 9.9E-22 72.4 8.9 76 2-82 14-89 (90)
42 cd04968 Ig3_Contactin_like Thi 99.8 4.7E-17 1E-21 72.2 8.9 71 2-81 15-85 (88)
43 cd05726 Ig4_Robo Fhird immunog 99.7 4.4E-17 9.5E-22 72.6 8.2 72 3-82 1-80 (90)
44 cd05758 Ig5_KIRREL3-like Fifth 99.7 3.3E-16 7.2E-21 70.7 11.0 80 2-82 15-98 (98)
45 cd05858 Ig3_FGFR-2 Third immun 99.7 1.2E-16 2.7E-21 71.1 9.3 80 3-82 1-88 (90)
46 cd05848 Ig1_Contactin-5 First 99.7 1.8E-16 3.9E-21 71.1 9.6 74 2-82 18-93 (94)
47 cd05731 Ig3_L1-CAM_like Third 99.7 3.6E-17 7.9E-22 69.9 6.9 69 6-82 1-69 (71)
48 cd05725 Ig3_Robo Third immunog 99.7 1.1E-16 2.3E-21 68.1 8.2 68 6-82 1-68 (69)
49 cd05763 Ig_1 Subgroup of the i 99.7 1.2E-16 2.6E-21 69.0 8.1 72 6-82 1-73 (75)
50 cd05750 Ig_Pro_neuregulin Immu 99.7 1.4E-16 3.1E-21 68.7 8.2 73 6-80 1-74 (75)
51 cd05854 Ig6_Contactin-2 Sixth 99.7 3.6E-16 7.9E-21 68.9 9.6 75 4-82 1-80 (85)
52 cd05760 Ig2_PTK7 Second immuno 99.7 1.4E-16 3E-21 69.1 8.1 69 6-81 1-72 (77)
53 cd04974 Ig3_FGFR Third immunog 99.7 3.8E-16 8.2E-21 69.6 9.2 80 3-82 1-88 (90)
54 cd05850 Ig1_Contactin-2 First 99.7 6.9E-16 1.5E-20 69.2 10.0 73 3-82 19-93 (94)
55 cd05742 Ig1_VEGFR_like First i 99.7 4.1E-16 8.8E-21 68.6 9.0 79 3-81 1-81 (84)
56 cd04973 Ig1_FGFR First immunog 99.7 4.2E-16 9.2E-21 67.9 9.0 71 2-82 8-78 (79)
57 cd05736 Ig2_Follistatin_like S 99.7 4.9E-16 1.1E-20 67.2 8.9 71 7-82 2-72 (76)
58 cd05765 Ig_3 Subgroup of the i 99.7 4.3E-16 9.3E-21 68.0 8.3 77 3-82 1-80 (81)
59 cd05849 Ig1_Contactin-1 First 99.7 1.1E-15 2.3E-20 68.5 9.5 71 3-82 19-92 (93)
60 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.5E-15 3.2E-20 67.8 9.2 71 2-81 17-88 (91)
61 cd05756 Ig1_IL1R_like First im 99.7 7.7E-16 1.7E-20 69.0 8.3 75 2-83 13-94 (94)
62 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 5.6E-16 1.2E-20 66.8 7.3 62 6-75 1-64 (74)
63 cd07702 Ig2_VEGFR-1 Second imm 99.7 5.6E-16 1.2E-20 66.3 7.1 62 6-75 1-62 (72)
64 cd05866 Ig1_NCAM-2 First immun 99.7 3.6E-15 7.7E-20 66.6 9.9 75 2-82 14-90 (92)
65 cd05724 Ig2_Robo Second immuno 99.7 1.1E-15 2.5E-20 67.4 8.2 67 2-76 10-78 (86)
66 cd05729 Ig2_FGFR_like Second i 99.7 9.9E-15 2.1E-19 64.1 10.6 78 2-83 8-85 (85)
67 cd07693 Ig1_Robo First immunog 99.7 4.4E-15 9.6E-20 67.0 9.4 79 2-81 15-97 (100)
68 cd05733 Ig6_L1-CAM_like Sixth 99.7 2.1E-15 4.6E-20 65.4 7.9 67 6-77 1-71 (77)
69 cd05874 Ig6_NrCAM Sixth immuno 99.7 5.2E-15 1.1E-19 64.2 9.0 71 6-81 1-76 (77)
70 cd04970 Ig6_Contactin_like Six 99.7 4.2E-15 9E-20 65.5 8.5 77 4-82 1-80 (85)
71 cd04977 Ig1_NCAM-1_like First 99.7 1.5E-14 3.3E-19 64.6 9.9 76 2-82 14-91 (92)
72 cd05861 Ig1_PDGFR-alphabeta Fr 99.6 4.6E-14 1E-18 62.1 10.9 78 3-81 1-80 (84)
73 cd04967 Ig1_Contactin First Ig 99.6 1.2E-14 2.5E-19 64.9 8.8 68 3-77 19-87 (91)
74 cd05722 Ig1_Neogenin First imm 99.6 2.5E-14 5.4E-19 64.3 9.9 75 2-82 13-94 (95)
75 cd05875 Ig6_hNeurofascin_like 99.6 1.3E-14 2.9E-19 62.9 8.6 67 6-77 1-71 (77)
76 cd05749 Ig2_Tyro3_like Second 99.6 7.4E-15 1.6E-19 64.2 7.4 63 2-77 12-75 (81)
77 cd05734 Ig7_DSCAM Seventh immu 99.6 1.4E-14 3E-19 63.1 7.6 68 6-81 1-77 (79)
78 cd05853 Ig6_Contactin-4 Sixth 99.6 1.4E-14 3E-19 63.8 7.2 77 4-81 1-79 (85)
79 cd05895 Ig_Pro_neuregulin-1 Im 99.6 4.3E-14 9.3E-19 61.1 8.0 72 6-80 1-75 (76)
80 cd05860 Ig4_SCFR Fourth immuno 99.6 1.4E-13 3E-18 62.0 9.7 81 2-82 17-98 (101)
81 cd05754 Ig3_Perlecan_like Thir 99.6 3.1E-14 6.7E-19 62.7 7.3 69 2-81 15-84 (85)
82 cd05898 Ig5_KIRREL3 Fifth immu 99.6 3.6E-13 7.7E-18 60.7 10.2 80 2-82 15-98 (98)
83 smart00408 IGc2 Immunoglobulin 99.5 5.9E-13 1.3E-17 55.0 7.8 63 2-73 1-63 (63)
84 cd05757 Ig2_IL1R_like Second i 99.5 2.8E-13 6E-18 60.5 6.8 68 2-78 9-81 (92)
85 cd05752 Ig1_FcgammaR_like Frst 99.5 6.3E-13 1.4E-17 57.7 7.5 54 2-71 14-68 (78)
86 cd05882 Ig1_Necl-1 First (N-te 99.5 1.9E-12 4.1E-17 58.2 9.2 65 2-70 11-83 (95)
87 cd05873 Ig_Sema4D_like Immunog 99.5 1.5E-12 3.3E-17 57.5 8.2 61 2-72 10-71 (87)
88 cd05862 Ig1_VEGFR First immuno 99.5 2.5E-12 5.5E-17 56.8 8.0 79 3-81 1-82 (86)
89 KOG3513|consensus 99.4 1.4E-12 3E-17 76.8 8.6 73 1-82 254-327 (1051)
90 cd04979 Ig_Semaphorin_C Immuno 99.4 2.2E-12 4.9E-17 57.3 7.5 72 2-81 10-84 (89)
91 PF00047 ig: Immunoglobulin do 99.4 5E-12 1.1E-16 52.8 7.7 63 3-68 1-64 (64)
92 KOG3513|consensus 99.4 1.4E-12 3.1E-17 76.8 7.1 73 2-82 440-512 (1051)
93 cd07690 Ig1_CD4 First immunogl 99.4 4.1E-12 8.9E-17 56.9 6.9 72 2-75 6-91 (94)
94 cd05759 Ig2_KIRREL3-like Secon 99.4 3.1E-11 6.7E-16 52.8 9.4 77 6-82 2-81 (82)
95 cd07701 Ig1_Necl-3 First (N-te 99.4 2.4E-11 5.3E-16 54.6 9.2 66 2-71 11-84 (95)
96 smart00410 IG_like Immunoglobu 99.4 8.7E-11 1.9E-15 51.0 10.8 75 2-81 8-83 (86)
97 smart00409 IG Immunoglobulin. 99.4 8.7E-11 1.9E-15 51.0 10.8 75 2-81 8-83 (86)
98 cd05753 Ig2_FcgammaR_like Seco 99.4 6.7E-12 1.5E-16 55.1 7.1 61 2-75 13-74 (83)
99 PHA02826 IL-1 receptor-like pr 99.4 8.1E-12 1.8E-16 63.9 7.8 64 2-72 143-211 (227)
100 cd05727 Ig2_Contactin-2-like S 99.4 4.8E-12 1E-16 56.8 5.7 66 2-74 17-85 (96)
101 cd05871 Ig_Semaphorin_classIII 99.3 4E-11 8.7E-16 53.5 8.1 70 2-81 10-86 (91)
102 PHA02785 IL-beta-binding prote 99.3 9.2E-11 2E-15 62.9 9.8 76 2-77 234-320 (326)
103 KOG4194|consensus 99.3 1.1E-11 2.3E-16 70.3 6.1 72 2-80 626-700 (873)
104 cd05885 Ig2_Necl-4 Second immu 99.3 3.3E-10 7.2E-15 49.3 8.8 74 6-82 2-79 (80)
105 cd05896 Ig1_IL1RAPL-1_like Fir 99.3 2.4E-10 5.3E-15 51.8 8.6 75 1-82 13-103 (104)
106 cd05717 Ig1_Necl-1-3_like Firs 99.3 4.9E-10 1.1E-14 50.3 9.6 67 2-72 11-85 (95)
107 KOG4221|consensus 99.3 1.3E-10 2.8E-15 69.6 9.0 72 2-80 251-324 (1381)
108 cd05845 Ig2_L1-CAM_like Second 99.3 3.4E-11 7.3E-16 54.0 5.0 64 2-73 17-83 (95)
109 PF13895 Ig_2: Immunoglobulin 99.3 1.4E-10 3.1E-15 50.1 7.0 65 2-81 13-78 (80)
110 cd05897 Ig2_IL1R2_like Second 99.2 6.6E-11 1.4E-15 53.1 5.8 68 2-75 9-81 (95)
111 PHA02785 IL-beta-binding prote 99.2 1.1E-10 2.5E-15 62.5 6.9 69 2-80 40-113 (326)
112 cd05714 Ig_CSPGs_LP Immunoglob 99.2 8.1E-10 1.7E-14 50.5 8.5 81 2-82 1-101 (106)
113 cd00098 IgC Immunoglobulin Con 99.2 5.6E-10 1.2E-14 50.0 7.2 72 2-73 12-86 (95)
114 cd05877 Ig_LP_like Immunoglobu 99.1 1.9E-09 4E-14 49.3 8.3 81 2-82 1-101 (106)
115 cd05900 Ig_Aggrecan Immunoglob 99.1 2E-09 4.3E-14 49.7 8.1 80 2-81 1-106 (112)
116 PHA02826 IL-1 receptor-like pr 99.1 5.2E-10 1.1E-14 57.4 6.4 81 1-81 35-130 (227)
117 PF13927 Ig_3: Immunoglobulin 99.1 1.7E-09 3.7E-14 46.1 6.8 57 6-70 18-75 (75)
118 cd05713 Ig_MOG_like Immunoglob 99.1 7.9E-09 1.7E-13 46.7 9.0 35 48-82 64-98 (100)
119 cd05878 Ig_Aggrecan_like Immun 99.1 1.1E-08 2.4E-13 47.2 9.3 81 2-82 1-105 (110)
120 cd05884 Ig2_Necl-3 Second immu 99.1 7.5E-09 1.6E-13 45.5 8.1 69 6-74 2-71 (83)
121 cd05761 Ig2_Necl-1-4_like Seco 99.1 5.7E-09 1.2E-13 45.7 7.7 68 6-74 2-70 (82)
122 cd05881 Ig1_Necl-2 First (N-te 99.1 1.1E-08 2.4E-13 46.0 8.5 65 2-70 11-83 (95)
123 cd05872 Ig_Sema4B_like Immunog 99.1 3.9E-09 8.4E-14 46.5 6.8 58 2-69 10-67 (85)
124 cd07705 Ig2_Necl-1 Second immu 99.1 1.1E-08 2.4E-13 44.9 8.3 68 6-74 2-71 (83)
125 cd05879 Ig_P0 Immunoglobulin ( 99.0 1.3E-08 2.8E-13 47.3 8.6 72 2-73 12-104 (116)
126 cd04983 IgV_TCR_alpha_like Imm 99.0 1.8E-08 3.8E-13 46.2 9.0 68 2-72 12-93 (109)
127 cd05902 Ig_Neurocan Immunoglob 99.0 2.1E-08 4.5E-13 46.3 8.7 80 2-81 1-104 (110)
128 cd05741 Ig_CEACAM_D1_like Firs 99.0 2.7E-08 5.8E-13 44.3 8.9 80 3-82 1-91 (92)
129 cd05883 Ig2_Necl-2 Second immu 99.0 3.6E-08 7.7E-13 43.2 8.3 66 6-73 2-68 (82)
130 cd05718 Ig1_PVR_like First imm 99.0 2.2E-08 4.8E-13 45.0 8.0 79 4-82 1-96 (98)
131 cd05775 Ig_SLAM-CD84_like_N N- 99.0 1.4E-08 3E-13 45.8 7.0 80 1-82 2-95 (97)
132 cd05751 Ig1_LILRB1_like First 98.9 9.5E-09 2E-13 45.8 6.0 61 2-71 15-75 (91)
133 cd05774 Ig_CEACAM_D1 First imm 98.9 4.2E-08 9.2E-13 44.9 8.1 81 2-82 12-104 (105)
134 cd00099 IgV Immunoglobulin var 98.9 3.1E-08 6.7E-13 45.0 7.6 69 2-73 5-91 (105)
135 cd05901 Ig_Versican Immunoglob 98.9 9.2E-08 2E-12 44.5 8.6 36 47-82 77-112 (117)
136 cd05846 Ig1_MRC-OX-2_like Firs 98.9 8.2E-08 1.8E-12 43.3 8.3 79 3-81 1-94 (97)
137 cd00096 Ig Immunoglobulin doma 98.9 2E-07 4.3E-12 38.6 9.0 66 6-72 1-66 (74)
138 cd05899 IgV_TCR_beta Immunoglo 98.8 6.1E-08 1.3E-12 44.6 7.0 70 2-72 12-95 (110)
139 cd04984 IgV_L_lambda Immunoglo 98.8 1.1E-07 2.4E-12 42.9 7.5 70 2-71 5-85 (98)
140 smart00407 IGc1 Immunoglobulin 98.8 2.2E-07 4.8E-12 40.0 7.6 67 6-72 2-71 (75)
141 PF08205 C2-set_2: CD80-like C 98.8 2.2E-07 4.7E-12 41.1 7.7 73 3-75 14-87 (89)
142 cd04980 IgV_L_kappa Immunoglob 98.8 5E-08 1.1E-12 44.6 5.6 70 2-71 14-93 (106)
143 cd04982 IgV_TCR_gamma Immunogl 98.8 2.2E-07 4.7E-12 43.1 7.6 66 2-70 12-98 (116)
144 cd05888 Ig1_Nectin-4_like Frst 98.8 4.6E-07 1E-11 41.1 8.4 36 47-82 62-98 (100)
145 cd07694 Ig2_CD4 Second immunog 98.7 2.4E-07 5.2E-12 40.9 6.8 60 1-71 12-73 (88)
146 cd05886 Ig1_Nectin-1_like Firs 98.7 1.2E-06 2.6E-11 39.7 9.2 36 47-82 61-97 (99)
147 KOG4222|consensus 98.7 7.5E-08 1.6E-12 58.2 6.1 70 2-77 145-215 (1281)
148 cd05887 Ig1_Nectin-3_like Firs 98.7 8.1E-07 1.8E-11 40.1 7.9 78 4-82 1-94 (96)
149 cd05889 Ig1_DNAM-1_like First 98.7 6.9E-07 1.5E-11 40.3 7.6 35 47-81 58-93 (96)
150 cd05880 Ig_EVA1 Immunoglobulin 98.7 4.8E-07 1E-11 42.1 7.1 26 48-73 78-103 (115)
151 cd07696 IgC_CH3 CH3 domain (th 98.7 7.6E-07 1.6E-11 40.2 7.2 73 2-74 13-88 (96)
152 KOG4221|consensus 98.7 1.7E-07 3.8E-12 57.0 6.4 64 2-73 154-217 (1381)
153 cd07698 IgC_MHC_I_alpha3 Class 98.7 8.4E-07 1.8E-11 39.7 7.3 68 3-73 14-84 (93)
154 cd05715 Ig_P0-like Immunoglobu 98.6 1.7E-06 3.7E-11 40.2 8.1 26 48-73 79-104 (116)
155 cd05771 IgC_Tapasin_R Tapasin- 98.6 2.4E-06 5.3E-11 40.9 8.8 72 2-73 52-132 (139)
156 cd05716 Ig_pIgR Immunoglobulin 98.6 1.6E-06 3.4E-11 39.1 7.8 68 2-72 6-87 (98)
157 cd05847 IgC_CH2_IgE CH2 domain 98.6 7.5E-07 1.6E-11 40.0 6.4 72 4-75 15-89 (94)
158 PHA02987 Ig domain OX-2-like p 98.6 1.2E-06 2.6E-11 43.6 7.5 72 2-73 29-110 (189)
159 cd05772 IgC_SIRP Signal-regula 98.6 3.8E-06 8.3E-11 38.9 9.0 69 2-72 20-92 (111)
160 cd05755 Ig2_ICAM-1_like Second 98.6 2.9E-06 6.3E-11 38.6 8.1 69 2-74 15-87 (100)
161 PF07654 C1-set: Immunoglobuli 98.6 3E-06 6.4E-11 37.1 8.0 68 3-73 8-78 (83)
162 cd05770 IgC_beta2m Class I maj 98.6 3.3E-06 7.2E-11 37.9 8.0 67 3-72 15-83 (93)
163 cd05768 IgC_CH4 CH4 domain (fo 98.6 6.4E-07 1.4E-11 40.8 5.8 71 3-73 16-92 (102)
164 cd05711 Ig_FcalphaRI Immunoglo 98.5 2.7E-06 5.8E-11 38.2 7.3 62 2-69 14-75 (94)
165 cd07699 IgC_L Immunoglobulin C 98.5 1.7E-06 3.7E-11 39.3 6.8 70 3-72 17-89 (100)
166 KOG4194|consensus 98.5 2.1E-07 4.5E-12 53.7 4.4 72 2-80 720-792 (873)
167 cd07700 IgV_CD8_beta Immunoglo 98.5 4E-06 8.7E-11 38.4 7.8 69 2-70 5-93 (107)
168 cd05720 Ig_CD8_alpha Immunoglo 98.5 1.5E-06 3.2E-11 39.7 6.2 69 2-70 5-90 (104)
169 PF07686 V-set: Immunoglobulin 98.5 2.3E-06 5E-11 39.1 6.6 70 2-71 15-101 (114)
170 cd05766 IgC_MHC_II_beta Class 98.5 5.7E-06 1.2E-10 37.2 7.5 69 2-73 13-84 (94)
171 cd05767 IgC_MHC_II_alpha Class 98.5 6.3E-06 1.4E-10 37.1 7.3 67 3-72 15-84 (94)
172 cd07706 IgV_TCR_delta Immunogl 98.4 5.2E-06 1.1E-10 38.5 7.3 66 2-70 13-93 (116)
173 cd05769 IgC_TCR_beta T cell re 98.4 5.6E-06 1.2E-10 38.6 7.2 75 3-77 18-97 (115)
174 cd07697 IgC_TCR_gamma T cell r 98.4 1.3E-05 2.8E-10 36.2 7.7 66 3-71 16-84 (96)
175 cd05719 Ig2_PVR_like Second im 98.3 2.3E-05 4.9E-10 35.4 8.3 67 5-74 17-84 (95)
176 PHA03376 BARF1; Provisional 98.3 2E-05 4.4E-10 39.7 7.7 70 2-71 25-109 (221)
177 cd05712 Ig_Siglec_N Immunoglob 98.3 1.9E-05 4.2E-10 36.9 7.2 70 2-71 13-102 (119)
178 cd07703 Ig2_Nectin-2_like Seco 98.3 3.2E-05 7E-10 34.9 8.0 68 5-75 17-85 (95)
179 cd04985 IgC_CH1 CH1 domain (fi 98.3 2.8E-05 6.1E-10 35.1 7.0 69 3-72 16-87 (95)
180 KOG4222|consensus 98.2 1.7E-06 3.7E-11 52.7 3.7 74 2-75 329-402 (1281)
181 smart00406 IGv Immunoglobulin 98.2 2E-05 4.4E-10 33.9 6.0 21 47-67 60-80 (81)
182 cd04986 IgC_CH2 CH2 domain (se 98.2 2.5E-05 5.4E-10 35.5 5.9 70 2-73 18-90 (99)
183 cd04981 IgV_H Immunoglobulin ( 98.1 4.9E-05 1.1E-09 35.5 6.8 69 2-70 11-97 (117)
184 cd05771 IgC_Tapasin_R Tapasin- 98.1 7.3E-06 1.6E-10 39.2 3.4 32 50-81 2-33 (139)
185 cd07692 Ig_CD3_epsilon Immunog 98.1 4.5E-05 9.8E-10 31.9 5.1 51 2-71 6-56 (65)
186 PHA02633 hypothetical protein; 97.9 6.4E-05 1.4E-09 31.1 4.1 33 50-82 19-51 (63)
187 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00092 2E-08 28.4 5.3 48 4-70 7-54 (69)
188 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.0013 2.8E-08 29.9 7.6 76 3-81 16-95 (97)
189 PF08204 V-set_CD47: CD47 immu 97.4 0.00021 4.5E-09 34.0 2.6 80 3-83 27-119 (130)
190 KOG4597|consensus 97.3 0.00064 1.4E-08 38.8 4.0 75 3-80 211-288 (560)
191 PHA03042 CD47-like protein; Pr 97.3 0.0054 1.2E-07 32.8 7.0 68 3-82 31-103 (286)
192 cd05890 Ig2_Nectin-1_like Seco 97.0 0.0089 1.9E-07 27.1 6.8 72 6-82 23-97 (98)
193 PF07354 Sp38: Zona-pellucida- 96.9 0.0057 1.2E-07 32.6 4.7 49 16-72 11-60 (271)
194 KOG3515|consensus 96.8 0.0011 2.5E-08 39.7 2.5 64 1-74 20-84 (741)
195 cd07689 Ig2_VCAM-1 Second immu 96.7 0.018 3.8E-07 26.4 6.2 69 2-72 14-86 (99)
196 cd05721 IgV_CTLA-4 Immunoglobu 96.6 0.023 4.9E-07 26.7 7.1 62 3-68 13-93 (115)
197 KOG1480|consensus 95.6 0.0024 5.2E-08 38.6 -0.5 63 4-74 145-208 (909)
198 PHA02865 MHC-like TNF binding 95.0 0.31 6.8E-06 27.3 6.3 21 5-25 216-238 (338)
199 PF11465 Receptor_2B4: Natural 94.9 0.1 2.2E-06 24.3 3.6 32 50-81 72-104 (108)
200 KOG3515|consensus 94.8 0.27 5.7E-06 30.4 5.9 69 3-71 112-185 (741)
201 PHA02982 hypothetical protein; 94.7 0.29 6.3E-06 25.7 6.7 26 48-73 99-124 (251)
202 PF06328 Lep_receptor_Ig: Ig-l 94.5 0.2 4.2E-06 22.5 6.5 59 2-67 17-80 (89)
203 PHA03052 Hypothetical protein; 93.6 0.27 5.9E-06 20.9 3.4 28 2-29 11-41 (69)
204 PHA02914 Immunoglobulin-like d 92.5 1.3 2.7E-05 25.8 6.2 70 2-71 278-368 (500)
205 PF05790 C2-set: Immunoglobuli 92.2 0.52 1.1E-05 20.7 7.2 22 51-72 45-67 (80)
206 PHA03271 envelope glycoprotein 91.9 1.6 3.4E-05 25.5 6.9 69 1-69 258-332 (490)
207 PHA03269 envelope glycoprotein 91.7 1.8 4E-05 25.8 7.0 69 1-69 340-414 (566)
208 PHA03270 envelope glycoprotein 89.6 2.8 6.1E-05 24.7 7.7 69 1-69 232-305 (466)
209 PHA03273 envelope glycoprotein 88.5 3.6 7.8E-05 24.4 7.9 69 1-69 248-322 (486)
210 PHA03112 IL-18 binding protein 83.7 3.9 8.5E-05 20.2 4.1 74 2-75 37-122 (141)
211 COG5475 Uncharacterized small 83.6 1.6 3.5E-05 17.9 1.9 19 61-79 28-46 (60)
212 PHA03240 envelope glycoprotein 79.9 3 6.5E-05 22.2 2.5 20 46-65 102-121 (258)
213 PHA02914 Immunoglobulin-like d 78.0 9.9 0.00022 22.5 4.3 32 49-80 81-113 (500)
214 PF01688 Herpes_gI: Alphaherpe 75.2 9.2 0.0002 19.5 4.0 26 49-74 124-149 (161)
215 PF05955 Herpes_gp2: Equine he 73.4 11 0.00024 19.6 5.9 62 10-71 114-178 (226)
216 PHA03283 envelope glycoprotein 65.1 29 0.00063 21.4 4.3 31 49-79 134-164 (542)
217 PF02440 Adeno_E3_CR1: Adenovi 63.6 11 0.00024 15.9 2.3 19 2-24 4-22 (63)
218 PF11049 KSHV_K1: Glycoprotein 63.3 12 0.00026 16.1 4.2 22 8-31 3-24 (71)
219 PHA03291 envelope glycoprotein 62.1 29 0.00062 20.3 3.8 33 48-80 128-160 (401)
220 PHA03290 envelope glycoprotein 54.2 42 0.00091 19.5 3.8 24 48-71 128-151 (357)
221 PF06832 BiPBP_C: Penicillin-B 53.2 21 0.00045 15.7 7.6 55 6-77 32-86 (89)
222 PF13220 DUF4028: Protein of u 50.4 20 0.00043 14.6 1.7 15 60-74 9-23 (65)
223 PHA03282 envelope glycoprotein 49.3 56 0.0012 20.1 3.8 22 48-69 123-144 (540)
224 PHA03289 envelope glycoprotein 48.1 54 0.0012 19.0 3.7 23 49-71 122-144 (352)
225 KOG0613|consensus 42.9 27 0.00059 23.9 2.1 70 4-76 350-420 (1205)
226 PHA03286 envelope glycoprotein 42.2 81 0.0018 19.3 4.2 28 48-75 126-153 (492)
227 PHA03292 envelope glycoprotein 38.4 88 0.0019 18.7 3.9 25 48-72 127-151 (413)
228 PF06214 SLAM: Signaling lymph 37.7 30 0.00064 16.6 1.4 19 50-68 104-122 (126)
229 PF02480 Herpes_gE: Alphaherpe 36.1 38 0.00082 20.4 1.9 21 50-70 270-290 (439)
230 PHA03189 UL14 tegument protein 33.9 99 0.0022 17.9 8.9 25 49-74 134-158 (348)
231 PF02124 Marek_A: Marek's dise 32.9 87 0.0019 17.0 6.9 51 19-69 8-60 (211)
232 COG3978 Acetolactate synthase 29.7 59 0.0013 14.6 1.6 12 60-71 26-37 (86)
233 PF11781 RRN7: RNA polymerase 29.4 32 0.00069 12.6 0.7 9 59-67 21-29 (36)
234 KOG1026|consensus 29.3 66 0.0014 21.1 2.2 27 2-28 206-232 (774)
235 PHA03298 envelope glycoprotein 28.0 67 0.0015 15.9 1.7 15 16-30 94-108 (167)
236 PF01034 Syndecan: Syndecan do 27.8 16 0.00035 15.5 -0.2 17 51-67 31-47 (64)
237 PF11088 RL11D: Glycoprotein e 25.7 41 0.0009 15.6 0.8 24 46-69 57-80 (98)
238 PF15096 G6B: G6B family 23.7 1.1E+02 0.0024 16.3 2.1 16 56-71 81-96 (224)
239 PF11327 DUF3129: Protein of u 23.2 1.3E+02 0.0028 15.8 2.8 23 48-70 92-114 (184)
240 PF09270 BTD: Beta-trefoil DNA 22.0 73 0.0016 16.4 1.3 23 2-24 72-94 (158)
241 PF07645 EGF_CA: Calcium-bindi 20.5 70 0.0015 11.8 0.9 10 61-70 22-31 (42)
242 KOG3743|consensus 20.0 1.5E+02 0.0032 18.8 2.4 24 2-25 382-405 (622)
No 1
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.86 E-value=3.6e-20 Score=80.40 Aligned_cols=76 Identities=20% Similarity=0.425 Sum_probs=59.7
Q ss_pred EEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 8 ~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
+.|.+.|.|.|.++|+++|..+...................+.|.|..+...|+|.|.|.|.|..|.....+.+.|
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 5688899999999999999998765433221111222234568999999999999999999999999999988876
No 2
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.86 E-value=2.3e-20 Score=80.47 Aligned_cols=74 Identities=30% Similarity=0.565 Sum_probs=61.0
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
+|+.+.|.|.+.|.|.|.+.|++++..+.......... ..+|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--------~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS--------SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc--------CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 58999999999999999999999998776543322211 2479999999999999999999999999888877
Q ss_pred eC
Q psy11826 82 DY 83 (83)
Q Consensus 82 ~~ 83 (83)
.+
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 53
No 3
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.85 E-value=5.8e-20 Score=78.96 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=59.7
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|+.+.|.|.+.|.|.|.+.|++++..+....+..+.. ..+|.|.+++.+|.|.|.|.+.|..|.......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--------~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--------DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--------CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 6789999999999999999999988765444333211 23699999999999999999999999998887775
No 4
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.84 E-value=2e-19 Score=81.49 Aligned_cols=81 Identities=26% Similarity=0.302 Sum_probs=62.4
Q ss_pred CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
+|+.+.|.|.+.+ .|.|.+.|+++|..+.......+...........+.|.|..++.+|+|.|.|.+.|..|.....+.
T Consensus 17 ~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~ 96 (101)
T cd04975 17 LGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFE 96 (101)
T ss_pred CCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEE
Confidence 5889999999999 889999999999988754322221110012234578999999999999999999999999887776
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|.
T Consensus 97 L~ 98 (101)
T cd04975 97 LY 98 (101)
T ss_pred EE
Confidence 64
No 5
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.84 E-value=7e-19 Score=78.05 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=61.4
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
|+.+.|.|.+.|.|+|.+.|.+++..+... .++.+... .......+.|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 788999999999999999999999877543 22222221 1223445789999999999999999999999998877665
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 80 ~ 80 (88)
T cd05735 80 T 80 (88)
T ss_pred E
Confidence 4
No 6
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.83 E-value=1.3e-18 Score=76.86 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=62.7
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+... .+..+.. ....+.|.|..+..+|+|.|.|.+.|..|.....+.
T Consensus 9 ~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~-----~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 9 AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVES-----YKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred cCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEE-----cCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 6899999999999999999999999888643 2232211 111467999999999999999999999999988887
Q ss_pred EeC
Q psy11826 81 TDY 83 (83)
Q Consensus 81 ~~~ 83 (83)
|.+
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 753
No 7
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.83 E-value=7.8e-19 Score=75.76 Aligned_cols=74 Identities=22% Similarity=0.444 Sum_probs=58.1
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
+.|.|.+.|.|.|.+.|++++..+... .++.+.. ......+|.|.++..+|+|.|.|.+.|..|.......|.+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~----~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ----DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE----cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 468999999999999999999888643 3333221 1112247999999999999999999999999988887753
No 8
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.83 E-value=9.1e-19 Score=78.27 Aligned_cols=77 Identities=21% Similarity=0.428 Sum_probs=62.5
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+....+..+... .. ....|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus 15 ~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 15 EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVE--QG--KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred CCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEc--CC--CEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 689999999999999999999999988865544333211 11 13579999999999999999999999999888877
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 91 ~ 91 (92)
T cd05737 91 S 91 (92)
T ss_pred e
Confidence 5
No 9
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.83 E-value=1.1e-18 Score=76.32 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=58.7
Q ss_pred EEeEeCccCCCeEEEEeCCEEecccceEEEEEEec--CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 8 ~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
+.|.+.|.|.|.+.|+++|..+............. ......+.|.|..++..|.|.|.|.+.|..|.....+.+.|
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 57889999999999999999887654322111100 11233457999999999999999999999999999998876
No 10
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.82 E-value=8.8e-19 Score=79.08 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=62.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+....+..+.. ....+.|.|..+..+|.|.|.|.+.|..|...+.+.|
T Consensus 14 ~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~-----~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l 88 (98)
T cd05762 14 AGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN-----TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL 88 (98)
T ss_pred CCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe-----cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence 68999999999999999999999999887554443322 1124679999999999999999999999998887766
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 89 ~ 89 (98)
T cd05762 89 T 89 (98)
T ss_pred E
Confidence 4
No 11
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.82 E-value=4.9e-19 Score=80.23 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=62.5
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEE-ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEW-FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
+|..+.|.|.+.|.|+|.+.|++++..+........... ........+.|.|.+++.+|+|.|.|.+.|..|.....+.
T Consensus 17 ~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~ 96 (101)
T cd05859 17 LHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFA 96 (101)
T ss_pred cCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEE
Confidence 467889999999999999999999998875443211110 0112234568999999999999999999999999887776
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|.
T Consensus 97 l~ 98 (101)
T cd05859 97 LQ 98 (101)
T ss_pred EE
Confidence 64
No 12
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.82 E-value=3.2e-18 Score=73.91 Aligned_cols=74 Identities=26% Similarity=0.443 Sum_probs=57.7
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
+.|.|.+.|.|.|.+.|++++..+... .+..+.. ......+|.|..++.+|+|.|.|.+.|..|.......|.+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 468999999999999999999887643 2222211 1112346999999999999999999999999988887753
No 13
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.82 E-value=2.3e-18 Score=74.34 Aligned_cols=74 Identities=31% Similarity=0.491 Sum_probs=57.6
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
+.|.|.+.|.|.|.+.|++++..+... .+..... .......|.|..++.+|+|.|.|.+.|..|.......|.+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 468999999999999999999887643 2222211 1112346999999999999999999999999988877753
No 14
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.82 E-value=1.5e-18 Score=74.30 Aligned_cols=71 Identities=21% Similarity=0.515 Sum_probs=56.7
Q ss_pred eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
.+.|.|.+.|.|.|.+.|++++..+.......+.. ...|.+..++.+|.|.|.|.+.|..|.......|.+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999999999999999998776544333221 124777799999999999999999999988887753
No 15
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.81 E-value=2.4e-18 Score=74.50 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=58.8
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|+.+.|.|.+.|.|.|.+.|++++..+.......... .. ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--VS----SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--ee----CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 6889999999999999999999998776432110111 01 24699999999999999999999999988877765
No 16
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.81 E-value=1.1e-18 Score=75.07 Aligned_cols=72 Identities=26% Similarity=0.446 Sum_probs=59.7
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|+.+.|.|.+.|.|.|.+.|++++..+.......... ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP--------DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC--------CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 6889999999999999999999998776544333211 13699999999999999999999999998887775
No 17
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.81 E-value=5.4e-18 Score=73.02 Aligned_cols=74 Identities=22% Similarity=0.377 Sum_probs=59.7
Q ss_pred eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY 83 (83)
Q Consensus 5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~ 83 (83)
.+.|.|.+.|.|.|.+.|++++..+....+..+.. ....+.|.|.++..+|+|.|.|.+.|..|.....+.|.+
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-----TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-----CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999998885544333221 112467999999999999999999999999988887753
No 18
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.81 E-value=2.1e-18 Score=77.76 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=60.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus 16 ~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 16 LEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred cCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence 36889999999999999999999876654321100000001112224679999999999999999999999999888887
Q ss_pred eC
Q psy11826 82 DY 83 (83)
Q Consensus 82 ~~ 83 (83)
.+
T Consensus 96 ~v 97 (97)
T cd05869 96 EV 97 (97)
T ss_pred EC
Confidence 53
No 19
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.81 E-value=6e-19 Score=74.51 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=51.9
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
+.|.|.+.|.|.|.+.|+++|..+.... ..+.|.|.++..+|+|.|.|.+.|..|.....+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 63 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL 63 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence 3689999999999999999998886321 13479999999999999999999999966555443
No 20
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.81 E-value=1e-18 Score=77.56 Aligned_cols=72 Identities=28% Similarity=0.408 Sum_probs=58.4
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+........ . ...|.|.+++.+|.|.|.|.+.|..|...+...|
T Consensus 15 ~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 15 KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-----S----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred CCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-----C----CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 689999999999999999999999876654322111 1 2369999999999999999999999998777665
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 86 ~ 86 (88)
T cd05851 86 Y 86 (88)
T ss_pred E
Confidence 3
No 21
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.80 E-value=1.2e-17 Score=73.59 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=61.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+............. ....|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus 8 ~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 8 AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred CCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC----CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 58899999999999999999999998876543221111100 13468899999999999999999999999988887
Q ss_pred eC
Q psy11826 82 DY 83 (83)
Q Consensus 82 ~~ 83 (83)
.+
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 53
No 22
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.80 E-value=3.9e-18 Score=73.82 Aligned_cols=74 Identities=18% Similarity=0.409 Sum_probs=58.0
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|+.+.|.|.+.|.|.|.+.|++++..+.......... .. ...|.+..++..|.|.|.|.+.|..|.......|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~--~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK--VD----GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE--ec----CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 6789999999999999999999998875322111111 01 13688899999999999999999999988887765
No 23
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.80 E-value=9.4e-18 Score=74.98 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=61.4
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.+.|.|.+.|++++..+.......+.. ....+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus 17 ~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 17 EGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred CCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 68999999999999999999999998776544433321 1113589999999999999999999999998888765
No 24
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.80 E-value=6.8e-18 Score=75.91 Aligned_cols=81 Identities=25% Similarity=0.368 Sum_probs=59.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus 15 ~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred cCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 58899999999999999999999885544321100000111122234689999999999999999999999998888776
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 95 ~ 95 (96)
T cd05732 95 E 95 (96)
T ss_pred e
Confidence 5
No 25
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.79 E-value=1.6e-18 Score=73.78 Aligned_cols=68 Identities=31% Similarity=0.562 Sum_probs=55.4
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
+.|.|.+.|.|.|.+.|++++..+.......+.. ...|.|..+..+|.|.|.|.+.|..|.......|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP--------EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC--------CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4689999999999999999998776544333211 2479999999999999999999999998877665
No 26
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.79 E-value=1.5e-17 Score=74.03 Aligned_cols=76 Identities=18% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+......... .......|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus 14 ~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 14 EGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 6899999999999999999999999876543221110 11124579999999999999999999999998887776
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 89 ~ 89 (90)
T cd04972 89 T 89 (90)
T ss_pred e
Confidence 5
No 27
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.78 E-value=8.3e-18 Score=75.53 Aligned_cols=74 Identities=30% Similarity=0.553 Sum_probs=59.7
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+... ...... .. .+.|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus 17 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~---~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN---ED----GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred CCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe---CC----CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 5889999999999999999999999877654 222111 01 246999999999999999999999999888777
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|.
T Consensus 90 L~ 91 (95)
T cd05730 90 LK 91 (95)
T ss_pred EE
Confidence 64
No 28
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.78 E-value=1e-17 Score=72.84 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=56.9
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
|+.+.|.|.+.|.|.|.+.|++++..+....+..+.. ......|.|.+++.+|.|.|.|.+.|..|......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS-----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE-----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 6889999999999999999999987776544333221 11245799999999999999999999999765543
No 29
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.78 E-value=1.8e-17 Score=71.69 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=58.7
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|+.+.|.|.+.|.|.|.+.|++++..+........ . ... ...|.|..++.+|.|.|.|.+.|..|.......|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~-~-~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR-R-RVD----GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce-E-Ecc----CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 78899999999999999999999987765432110 0 011 24799999999999999999999999988877664
No 30
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.78 E-value=1.5e-17 Score=73.35 Aligned_cols=72 Identities=26% Similarity=0.515 Sum_probs=60.2
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+......... ...|.|..+..+|.|.|.|.+.|..|.......|
T Consensus 13 ~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 13 IGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---------AGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred CCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 5889999999999999999999999887654433221 2368999999999999999999999998887776
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 84 ~ 84 (85)
T cd05728 84 A 84 (85)
T ss_pred E
Confidence 4
No 31
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.78 E-value=4.5e-17 Score=74.80 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=59.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceeeEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+... .+...... .......+.|.|.++. .+|.|.|.|.+.|..|.....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 3578999999999999999999999887643 22222211 1122224679999987 5899999999999999987777
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
.|.
T Consensus 101 ~L~ 103 (109)
T cd05773 101 QLV 103 (109)
T ss_pred EEE
Confidence 664
No 32
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.78 E-value=4e-18 Score=72.94 Aligned_cols=69 Identities=25% Similarity=0.519 Sum_probs=54.4
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
+.|.|.+.|.|.|.+.|++++..+..... ... . ....|.|..++.+|.|.|.|.+.|..|.....+.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~---~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL---N----NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT 69 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE---c----CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence 46899999999999999998876543221 110 0 134799999999999999999999999988877764
No 33
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.78 E-value=1.2e-17 Score=73.04 Aligned_cols=75 Identities=28% Similarity=0.494 Sum_probs=60.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.+.|.|.+.|++++..+........ ......|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus 8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred CCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 589999999999999999999999876653321110 1113579999999999999999999999999888887
Q ss_pred eC
Q psy11826 82 DY 83 (83)
Q Consensus 82 ~~ 83 (83)
++
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 63
No 34
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.78 E-value=2.2e-17 Score=70.27 Aligned_cols=68 Identities=26% Similarity=0.512 Sum_probs=53.4
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
|+.+.|.|.+.|.|.|.+.|++++..+........ . ...|.|.++. |.|.|.|.+.|..|.......|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----G----RNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----C----ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999987754332211 1 2357777764 7899999999999998877765
No 35
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.77 E-value=6.4e-18 Score=72.29 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=54.3
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
+.|.|.+.|.|.|.+.|++++..+........ . ...|.|.++..+|+|.|.|.+.|..|.....+.++
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----S----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----C----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 36899999999999999999988865532211 1 24799999999999999999999999876665543
No 36
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.77 E-value=1.7e-17 Score=74.95 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=57.0
Q ss_pred CCceEEEEeEeCccCCCeEEEEeC--CEEeccc-----ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKD--DIELTFH-----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
.|+.+.|.|.+.|.|.|.+.|++. +..+... .++.. ........|.|.+++.+|+|.|.|.+.|..|.
T Consensus 15 ~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v-----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 15 ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV-----KGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred CCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE-----eecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 689999999999999999999984 3333211 11111 11112357999999999999999999999999
Q ss_pred eeeEEEEe
Q psy11826 75 DRRGFRTD 82 (83)
Q Consensus 75 ~~~~~~~~ 82 (83)
......|.
T Consensus 90 ~~~~~~l~ 97 (98)
T cd05870 90 HQKSMYLD 97 (98)
T ss_pred ceeEEEEe
Confidence 88777765
No 37
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.77 E-value=4.2e-17 Score=73.35 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=58.0
Q ss_pred CCceEEEEeEeCccCC-CeEEEEe-CCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC-cceee
Q psy11826 2 LGRKITFFCMAEGFPR-PHITWTK-DDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF-AIDRR 77 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~-~~~~w~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-g~~~~ 77 (83)
.|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..+.... ......++|.|..++.+|.|.|.|.+.|.. |....
T Consensus 14 ~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 14 VGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred CCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 5899999999999985 7999998 6665543 2222221 111224689999999999999999999996 77887
Q ss_pred EEEEe
Q psy11826 78 GFRTD 82 (83)
Q Consensus 78 ~~~~~ 82 (83)
.+.|+
T Consensus 90 s~~l~ 94 (96)
T cd05865 90 TVNVK 94 (96)
T ss_pred EEEEE
Confidence 77765
No 38
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.77 E-value=4.4e-17 Score=72.81 Aligned_cols=78 Identities=21% Similarity=0.435 Sum_probs=61.9
Q ss_pred CCCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.+|+.+.|.|.+.+.|.|.+.|++++..+.....+.... ... . .+.|.|..++.+|+|.|.|.+.|..|.....+.
T Consensus 14 ~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~--~~~-~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 14 MEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL--EQG-K-YASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE--cCC-C-EEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 368999999999999999999999998776544333211 111 1 246999999999999999999999999988887
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|.
T Consensus 90 v~ 91 (92)
T cd05891 90 VS 91 (92)
T ss_pred EE
Confidence 65
No 39
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.77 E-value=5.1e-18 Score=72.33 Aligned_cols=63 Identities=25% Similarity=0.497 Sum_probs=50.8
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG 78 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~ 78 (83)
+.+.|.+.|.|.|.+.|++++..+....... ....|.|..+..+|.|.|.|.+.|..|.....
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~ 63 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQR 63 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc----------cCCEEEECcCCHHHCEEEEEEEEECCCceeeE
Confidence 3688999999999999999999886542211 02369999999999999999999999965443
No 40
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.77 E-value=4.7e-17 Score=70.06 Aligned_cols=72 Identities=26% Similarity=0.447 Sum_probs=56.4
Q ss_pred CceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
|+.+.|.|.+.|.|.|.+.|++ ++..+.......... ..+|.|..+..+|.|.|.|.+.|..|.......|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD--------NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec--------CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6889999999999999999997 555554333222111 2368889999999999999999999998888776
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 73 ~ 73 (74)
T cd05764 73 H 73 (74)
T ss_pred E
Confidence 5
No 41
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.76 E-value=4.6e-17 Score=72.36 Aligned_cols=76 Identities=32% Similarity=0.511 Sum_probs=64.3
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.+.|.|.+.|++++..+........... . ..+.|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus 14 ~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 14 EGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD--G---GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp TTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE--T---TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc--c---ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 689999999999999999999999998887655544322 1 35689999999999999999999999998888776
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 89 ~ 89 (90)
T PF07679_consen 89 T 89 (90)
T ss_dssp E
T ss_pred E
Confidence 5
No 42
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.76 E-value=4.7e-17 Score=72.18 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=57.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.+++.+|+|.|.|.+.|..|.......|
T Consensus 15 ~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---------MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred CCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---------EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 58899999999999999999999876554332211 113479999999999999999999999987776655
No 43
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.75 E-value=4.4e-17 Score=72.56 Aligned_cols=72 Identities=29% Similarity=0.509 Sum_probs=55.0
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecc--------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTF--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
|+.+.|.|.+.+.|.|.+.|++++..+.. ..++.. .. ...|.|.+++.+|+|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-----~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-----SQ---TGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-----CC---CCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 68899999999999999999998754311 111111 10 236999999999999999999999998
Q ss_pred eeeEEEEe
Q psy11826 75 DRRGFRTD 82 (83)
Q Consensus 75 ~~~~~~~~ 82 (83)
....+.|.
T Consensus 73 ~~~~~~l~ 80 (90)
T cd05726 73 ILTKAYLE 80 (90)
T ss_pred eEEEEEEE
Confidence 87766654
No 44
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.75 E-value=3.3e-16 Score=70.71 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=61.6
Q ss_pred CCceEEEEeEeCccCCC-eEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826 2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR 77 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~ 77 (83)
.|+.+.|.|.+.|.|.| .+.|.+++..+... .++.+.... ......+.|.|..++.+| .|.|.|.+.|..|....
T Consensus 15 ~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~ 93 (98)
T cd05758 15 LGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTA 93 (98)
T ss_pred CCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEEcCCCcccE
Confidence 58999999999999999 59999999877643 233333221 123345689999999866 89999999999999888
Q ss_pred EEEEe
Q psy11826 78 GFRTD 82 (83)
Q Consensus 78 ~~~~~ 82 (83)
.+.|+
T Consensus 94 ~~~L~ 98 (98)
T cd05758 94 IISLE 98 (98)
T ss_pred EEEeC
Confidence 87763
No 45
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.74 E-value=1.2e-16 Score=71.10 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=55.3
Q ss_pred CceEEEEeEeCccCCCeEEEEeC----CEEecccc--eEEEEEEec--CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKD----DIELTFHK--YFQVHEWFL--GNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~----~~~~~~~~--~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
|+.+.|.|.+.+.|.|.+.|++. +..+.... ......... ......+.|.|.+++.+|+|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 33332211 111100000 00111357999999999999999999999998
Q ss_pred eeeEEEEe
Q psy11826 75 DRRGFRTD 82 (83)
Q Consensus 75 ~~~~~~~~ 82 (83)
......|.
T Consensus 81 ~~~~a~L~ 88 (90)
T cd05858 81 SHHSAWLT 88 (90)
T ss_pred ccceEEEE
Confidence 87766654
No 46
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.74 E-value=1.8e-16 Score=71.09 Aligned_cols=74 Identities=23% Similarity=0.435 Sum_probs=54.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCccee-eEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDR-RGF 79 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~-~~~ 79 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+.......... . ...|.|..+. .+|.|.|.|.+.|..|... ...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~-----~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~ 90 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--I-----DGNLIISNPSEVKDSGRYQCLATNSIGSILSREA 90 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--e-----CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccE
Confidence 36789999999999999999999998876432211111 0 1357787774 6899999999999999874 355
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
.|+
T Consensus 91 ~l~ 93 (94)
T cd05848 91 LLQ 93 (94)
T ss_pred EEe
Confidence 554
No 47
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.74 E-value=3.6e-17 Score=69.85 Aligned_cols=69 Identities=29% Similarity=0.607 Sum_probs=53.9
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
+.|.|.+.|.|.|.+.|++++..+..... ... .....|.|.+++.+|.|.|.|.+.|..|.....+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRT-KFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVT 69 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCce-eEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence 46899999999999999998876643211 110 1124799999999999999999999999988777664
No 48
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.74 E-value=1.1e-16 Score=68.15 Aligned_cols=68 Identities=26% Similarity=0.468 Sum_probs=54.1
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
+.|.|.+.|.|.|.+.|++++..++... ..... ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~~--------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGR-AEILD--------DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCc-EEEee--------CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 4689999999999999999876654322 22111 23699999999999999999999999988877765
No 49
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.73 E-value=1.2e-16 Score=68.97 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=52.1
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEe-cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
+.|.|.+.|.|.|.+.|++++... +.....+.... .. ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM-PE----DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe-cC----CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 368999999999999999987542 22111111110 01 23689999999999999999999999887776654
No 50
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.73 E-value=1.4e-16 Score=68.67 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=54.6
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
+.|.|.+.+ .|.|.+.|++++..+.......... .......+.|.|..++.+|.|.|.|.+.|..|.......
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~--~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIK--IRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEE--EEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 8999999999998776543221100 011122467999999999999999999999998776654
No 51
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.73 E-value=3.6e-16 Score=68.95 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=56.4
Q ss_pred ceEEEEeEeCccCCC--eEEEEeCCEEecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826 4 RKITFFCMAEGFPRP--HITWTKDDIELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG 78 (83)
Q Consensus 4 ~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~ 78 (83)
+++.|.|.+.|.|.| .+.|++++..+.... ...... .. ...+.|.|.+++..|.|.|.|.+.|..|...+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME--VK--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE--ec--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 468999999999987 579999998775422 111111 00 123579999999999999999999999998887
Q ss_pred EEEe
Q psy11826 79 FRTD 82 (83)
Q Consensus 79 ~~~~ 82 (83)
..|.
T Consensus 77 ~~L~ 80 (85)
T cd05854 77 ATLV 80 (85)
T ss_pred EEEE
Confidence 7664
No 52
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.73 E-value=1.4e-16 Score=69.11 Aligned_cols=69 Identities=28% Similarity=0.567 Sum_probs=52.2
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee--eEEEE
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR--RGFRT 81 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~--~~~~~ 81 (83)
++|.|.+.|.|.|.+.|+++|..+..... ..... . ..+|.|..+..+|.|.|.|.+.|..|... ..+.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~---~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS---K----ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC---C----CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 47899999999999999999988754321 11110 1 23799999999999999999999999753 34444
No 53
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.72 E-value=3.8e-16 Score=69.56 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=54.8
Q ss_pred CceEEEEeEeCccCCCeEEEEeCC----EEeccc--ceEEEEEEecCC--CeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDD----IELTFH--KYFQVHEWFLGN--NTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~----~~~~~~--~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
|+.+.|.|.+.|.|.|.+.|++++ ..+... ............ ......|.|.+++.+|+|.|.|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999853 222111 111111110000 111236899999999999999999999998
Q ss_pred eeeEEEEe
Q psy11826 75 DRRGFRTD 82 (83)
Q Consensus 75 ~~~~~~~~ 82 (83)
......|.
T Consensus 81 ~~~sa~L~ 88 (90)
T cd04974 81 SHHSAWLT 88 (90)
T ss_pred ccCCEEEE
Confidence 87766654
No 54
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.72 E-value=6.9e-16 Score=69.21 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=54.0
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceee-EEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRR-GFR 80 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~-~~~ 80 (83)
|+.+.|.|.+.|.|.|.+.|++++..+.......... . ...|.|..+. ..|.|.|.|.+.|..|.... ...
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~-----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~ 91 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--V-----AGNLVINNPQKARDAGSYQCLAINRCGTVVSREAN 91 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--E-----CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEE
Confidence 5689999999999999999999998876432111111 0 1357777654 58999999999999998754 555
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|.
T Consensus 92 l~ 93 (94)
T cd05850 92 LR 93 (94)
T ss_pred Ee
Confidence 54
No 55
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.72 E-value=4.1e-16 Score=68.64 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=56.6
Q ss_pred CceEEEEeEeCcc--CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 3 GRKITFFCMAEGF--PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 3 g~~~~~~C~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
|+.+.|.|.+.+. |.|.+.|..++..+...................+.|.|.+++.+|+|.|.|.+.|..+.......
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7889999999998 88899999877654322111100111112234568999999999999999999999988766655
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 81 v 81 (84)
T cd05742 81 V 81 (84)
T ss_pred E
Confidence 4
No 56
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.72 E-value=4.2e-16 Score=67.89 Aligned_cols=71 Identities=25% Similarity=0.485 Sum_probs=57.3
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.+. .+.+.|+++|..+....+..+. ...|.|..++.+|+|.|.|.+.|..|.....+.|
T Consensus 8 ~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 8 PGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred CCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 68999999998886 5689999999887654433321 1369999999999999999999999988777766
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 78 ~ 78 (79)
T cd04973 78 N 78 (79)
T ss_pred e
Confidence 4
No 57
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.72 E-value=4.9e-16 Score=67.21 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=54.2
Q ss_pred EEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 7 ~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
.|.|.+.|.|.|.+.|++++..+........... .. ...|.|..++.+|.|.|.|.+.|..|.....+.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~--~~---~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI--AN---GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF 72 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEe--CC---CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence 6889999999999999999987764322111111 11 23699999999999999999999999887766653
No 58
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.71 E-value=4.3e-16 Score=68.04 Aligned_cols=77 Identities=30% Similarity=0.469 Sum_probs=55.0
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCE---EecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDI---ELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
|+.+.|.|.+.|.|.|.+.|++++. .+............. .....|.|.+++.+|.|.|.|.+.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV---TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE---ccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 6889999999999999999998632 111110000000000 0124799999999999999999999999998888
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
.|.
T Consensus 78 ~l~ 80 (81)
T cd05765 78 PLS 80 (81)
T ss_pred EEe
Confidence 775
No 59
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=1.1e-15 Score=68.47 Aligned_cols=71 Identities=23% Similarity=0.474 Sum_probs=53.6
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceee-EE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRR-GF 79 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~-~~ 79 (83)
|..+.|.|.+.|.|.|.+.|++++..+... .+.... ...|.|..+. .+|+|.|.|.+.|..|.... ..
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~---------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a 89 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV---------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREA 89 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE---------CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccE
Confidence 457999999999999999999999877532 222111 2368888875 68999999999999998644 55
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
+|.
T Consensus 90 ~l~ 92 (93)
T cd05849 90 TLS 92 (93)
T ss_pred EEe
Confidence 554
No 60
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.69 E-value=1.5e-15 Score=67.77 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=54.9
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee-EEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR-GFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~-~~~ 80 (83)
.|+.+.|.|.+.|. .|.+.|++++..+.... .... .. ...|.|..++.+|.|.|.|.+.|..|.... .+.
T Consensus 17 ~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~---~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 17 DNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLS---ND----NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred cCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEe---CC----CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 58899999999999 99999999998765432 2211 01 236999999999999999999999997543 444
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 88 L 88 (91)
T cd05740 88 L 88 (91)
T ss_pred E
Confidence 4
No 61
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.69 E-value=7.7e-16 Score=69.02 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=57.4
Q ss_pred CCceEEEEeEeCc-----cCCCeEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
+|+.+.|.|.+.+ .|.|.+.|++++..+... ...++.. ....|.|..+..+|+|.|.|.+.|..|.
T Consensus 13 ~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 13 EGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred cCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 5889999999888 688899999988654321 1111111 0247999999999999999999999999
Q ss_pred eeeEEEEeC
Q psy11826 75 DRRGFRTDY 83 (83)
Q Consensus 75 ~~~~~~~~~ 83 (83)
....+.|.+
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 888877653
No 62
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.69 E-value=5.6e-16 Score=66.76 Aligned_cols=62 Identities=32% Similarity=0.584 Sum_probs=48.6
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
+.|.|.+.|.|.|.+.|++++..+... ...... . ...|.|..++.+|.|.|.|.+.|..|..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----R----SGALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----C----CcEEEECCCChhhCEEEEEEEECCCCce
Confidence 368999999999999999999876532 222211 1 2358999999999999999999999974
No 63
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.69 E-value=5.6e-16 Score=66.28 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=47.9
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
+.|.|.+.|.|.|.+.|++++..+..... ... .. ..+|.|.+++.+|+|.|.|.+.+.....
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~---~~----~~~L~I~~v~~~D~G~YtC~a~~~~~~~ 62 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYH---VD----GYSLVIKDVTEEDAGIYTILLGIKQYNL 62 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEE---eC----CCEEEECcCCHHHCEEEEEEEEccccce
Confidence 36889999999999999999988765321 111 11 1369999999999999999999975543
No 64
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.69 E-value=3.6e-15 Score=66.60 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=55.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-eeEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID-RRGF 79 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-~~~~ 79 (83)
.|+.+.|.|.+.|.|. .+.|++ ++..+....+..+.. ....+.|.|..+..+|+|.|.|.+.|..|.. .+.+
T Consensus 14 ~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~-----~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 14 VGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK-----EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred CCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEe-----CCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 5899999999999987 899998 465554433333211 1113579999999999999999999999875 5555
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
.|.
T Consensus 88 ~l~ 90 (92)
T cd05866 88 VLE 90 (92)
T ss_pred EEE
Confidence 543
No 65
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.69 E-value=1.1e-15 Score=67.36 Aligned_cols=67 Identities=27% Similarity=0.583 Sum_probs=53.7
Q ss_pred CCceEEEEeEe-CccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826 2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR 76 (83)
Q Consensus 2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~ 76 (83)
.|+.+.|.|.+ .+.|.|.+.|++++..+... ....... ...|.|..++.+|.|.|.|.+.|..|...
T Consensus 10 ~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 10 VGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--------DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--------CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 68999999997 68999999999999877653 2222111 24699999999999999999999998754
No 66
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.68 E-value=9.9e-15 Score=64.11 Aligned_cols=78 Identities=24% Similarity=0.480 Sum_probs=60.3
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|+.+.|.|.+.+.|.+.+.|++++..+.......... .......|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus 8 ~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred CCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 58899999999999999999999988765433222111 11123468899999999999999999999998888887
Q ss_pred eC
Q psy11826 82 DY 83 (83)
Q Consensus 82 ~~ 83 (83)
++
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 63
No 67
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.67 E-value=4.4e-15 Score=66.98 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=52.2
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc-eee
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI-DRR 77 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~-~~~ 77 (83)
.|+.+.|.|.+.|.|.|.+.|++++..+.... ...... ...+......+....+..+|.|.|.|.+.|..|. ...
T Consensus 15 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~ 93 (100)
T cd07693 15 KGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIV-LPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93 (100)
T ss_pred CCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEE-ecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecc
Confidence 58999999999999999999999998776521 111100 0111111112222334689999999999999998 444
Q ss_pred EEEE
Q psy11826 78 GFRT 81 (83)
Q Consensus 78 ~~~~ 81 (83)
...|
T Consensus 94 ~~~l 97 (100)
T cd07693 94 NASL 97 (100)
T ss_pred eEEE
Confidence 5544
No 68
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.67 E-value=2.1e-15 Score=65.40 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=47.5
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC----CCCeEEEEEeeCCCcceee
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ----KDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~~~~g~~~~ 77 (83)
+.|.|.+.|.|.|.+.|++++..+.......+... .. ...|.|..+.. +|.|.|.|.+.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~----~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-PD----SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-CC----CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 46899999999999999999987754321111111 01 23577777643 6899999999999997643
No 69
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.67 E-value=5.2e-15 Score=64.16 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=47.9
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC----CCCeEEEEEeeCCCcceee-EEE
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ----KDAGYYECVADNPFAIDRR-GFR 80 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~~~~g~~~~-~~~ 80 (83)
+.|.|.+.|.|.|.+.|++++..+........... .. .++|.|..+.. .|.|.|.|.+.|..|.... .+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~----~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-PN----TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-CC----CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 46899999999999999999987643221111100 01 23566666553 3789999999999998654 444
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 76 ~ 76 (77)
T cd05874 76 I 76 (77)
T ss_pred E
Confidence 3
No 70
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.66 E-value=4.2e-15 Score=65.54 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=54.7
Q ss_pred ceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 4 RKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 4 ~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
+.+.|.|.+.+.|.| .+.|++++..+..... ...... ......+.|.|.+++..|+|.|.|.+.|..|.......
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRV--GGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEE--ecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 368899999999887 5689999987764321 100000 00111357999999999999999999999998776665
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|.
T Consensus 79 l~ 80 (85)
T cd04970 79 LI 80 (85)
T ss_pred EE
Confidence 53
No 71
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.65 E-value=1.5e-14 Score=64.63 Aligned_cols=76 Identities=26% Similarity=0.487 Sum_probs=54.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc-eeeEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI-DRRGF 79 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~-~~~~~ 79 (83)
.|+.+.|.|.+.|.| +.+.|++ ++..+......... ......++|.|.+++.+|.|.|.|.+.|..|. .....
T Consensus 14 ~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv 88 (92)
T cd04977 14 VGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV 88 (92)
T ss_pred CCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence 589999999999986 4999997 55544432222211 12223568999999999999999999998654 56666
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
.|.
T Consensus 89 ~l~ 91 (92)
T cd04977 89 NLK 91 (92)
T ss_pred EEE
Confidence 654
No 72
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.65 E-value=4.6e-14 Score=62.11 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=54.0
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc--ceeeEEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA--IDRRGFR 80 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g--~~~~~~~ 80 (83)
|+.++|.|.+.+.|.+.+.|...+......... ............+.|.|.+++.+|+|.|.|.+.+..+ .....+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 788999999999999999999876543221110 0011112233457899999999999999999998765 4444544
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 80 i 80 (84)
T cd05861 80 I 80 (84)
T ss_pred E
Confidence 4
No 73
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.64 E-value=1.2e-14 Score=64.86 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=50.3
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceee
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~ 77 (83)
|+.+.|.|.+.|.|.|.+.|++++..+.......... ....|.|.++. .+|.|.|.|.+.|..|....
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4679999999999999999999998774322111110 01357787776 48999999999999997654
No 74
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.64 E-value=2.5e-14 Score=64.25 Aligned_cols=75 Identities=29% Similarity=0.524 Sum_probs=52.6
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccC-----CCCCCeEEEEEeeCC-Ccce
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-----TQKDAGYYECVADNP-FAID 75 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~C~~~~~-~g~~ 75 (83)
.|+.+.|.|.+.+.|.|.+.|++++..+........... .. ..+.+..+ ...|.|.|.|.+.|. .|..
T Consensus 13 ~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~-~~-----~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 13 RGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL-PN-----GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc-cC-----CeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 588999999999999999999999987764322111110 01 12444443 688999999999999 8876
Q ss_pred -eeEEEEe
Q psy11826 76 -RRGFRTD 82 (83)
Q Consensus 76 -~~~~~~~ 82 (83)
...+.|.
T Consensus 87 ~s~~~~l~ 94 (95)
T cd05722 87 VSRTARLT 94 (95)
T ss_pred EEeeeEEe
Confidence 4455553
No 75
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.64 E-value=1.3e-14 Score=62.88 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=46.2
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC----CCCeEEEEEeeCCCcceee
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ----KDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~~~~g~~~~ 77 (83)
+.|.|.+.|.|.|.+.|++++..+.......+... .. ..+|.|..+.. .|.|.|.|.+.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-~~----~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-RR----SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-CC----CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 46899999999999999999986643221111110 01 23677776542 3589999999999997654
No 76
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.63 E-value=7.4e-15 Score=64.19 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=49.2
Q ss_pred CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826 2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~ 77 (83)
.|+.+.|.|.+.|.|.| .+.|.+++..+..... ...+.|.|..+ .|.|.|.|.+.|..|...+
T Consensus 12 ~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~-----------~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 12 ANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA-----------PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC-----------CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 58899999999999999 7999999987753110 01246777776 4779999999999997654
No 77
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.62 E-value=1.4e-14 Score=63.07 Aligned_cols=68 Identities=26% Similarity=0.511 Sum_probs=48.4
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEe-cc-------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-e
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIEL-TF-------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID-R 76 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-~ 76 (83)
+.|.|.+.|.|.|.+.|++.+... +. ..+.... ...+|.|..+..+|.|.|.|.+.|..|.. .
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--------SNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--------cCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 468999999999999999864321 11 1111110 12479999999999999999999999976 4
Q ss_pred eEEEE
Q psy11826 77 RGFRT 81 (83)
Q Consensus 77 ~~~~~ 81 (83)
....|
T Consensus 73 ~~~~l 77 (79)
T cd05734 73 KSMVL 77 (79)
T ss_pred eEEEE
Confidence 44444
No 78
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.61 E-value=1.4e-14 Score=63.75 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=53.9
Q ss_pred ceEEEEeEeCc--cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 4 RKITFFCMAEG--FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 4 ~~~~~~C~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
+.+.|.|.+.+ .+.+.+.|+++|..+.......... ........+.|.|.+++.+|.|.|+|.+.+..+.......|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~-~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFE-RVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEE-EeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 35789999876 4577899999999886421110110 01111113479999999999999999999999987666554
No 79
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.59 E-value=4.3e-14 Score=61.10 Aligned_cols=72 Identities=18% Similarity=0.378 Sum_probs=51.4
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
+.|.|.+.+ .|.+.+.|++++..+.... ...+.. ......+.|.|.++..+|+|.|.|.+.|..|.......
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI---RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE---EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368899764 6778999999998775321 111111 11122457999999999999999999999998776543
No 80
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.59 E-value=1.4e-13 Score=61.95 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=64.2
Q ss_pred CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
+|+.+.+.|.++.+|+|. +.|.+.+..+................++.+.|.|.+++.++.|.|+|.+.|........|.
T Consensus 17 ~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~ 96 (101)
T cd05860 17 AGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFN 96 (101)
T ss_pred CCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEE
Confidence 588999999999999998 9999887765443322222222234567889999999999999999999999999988887
Q ss_pred Ee
Q psy11826 81 TD 82 (83)
Q Consensus 81 ~~ 82 (83)
|+
T Consensus 97 l~ 98 (101)
T cd05860 97 VY 98 (101)
T ss_pred EE
Confidence 75
No 81
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.59 E-value=3.1e-14 Score=62.75 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=54.0
Q ss_pred CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.|+.++|.|.+.+ .|.+.+.|++++..++.... .....|.|..++.+|+|.|.|.+.|..|.......
T Consensus 15 ~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~-----------~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 15 PGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM-----------DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred CCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc-----------ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 5899999999864 68889999998765432210 01247999999999999999999999998877665
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 4
No 82
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.57 E-value=3.6e-13 Score=60.70 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=59.3
Q ss_pred CCceEEEEeEeCccCCCe-EEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826 2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR 77 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~ 77 (83)
.|+.+.|.|.+.+.|.|. +.|...+..+... .++.+... .......+.|.|.++...| .|.|.|.+.|..|.+..
T Consensus 15 ~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~ 93 (98)
T cd05898 15 RGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTA 93 (98)
T ss_pred CCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceE
Confidence 589999999998888874 6777666555432 23333332 2234456789999998878 68999999999999988
Q ss_pred EEEEe
Q psy11826 78 GFRTD 82 (83)
Q Consensus 78 ~~~~~ 82 (83)
.+.|+
T Consensus 94 ~i~L~ 98 (98)
T cd05898 94 IIQLE 98 (98)
T ss_pred EEEeC
Confidence 88764
No 83
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.51 E-value=5.9e-13 Score=55.00 Aligned_cols=63 Identities=37% Similarity=0.634 Sum_probs=48.7
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.|+.+.|.|.+.+.+.+.+.|++++..+.... ... .....|.|..++..|.|.|.|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESN--RLS-------ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCC--EEe-------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47899999998888899999999887776211 110 0124799999999999999999988654
No 84
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.51 E-value=2.8e-13 Score=60.53 Aligned_cols=68 Identities=24% Similarity=0.237 Sum_probs=51.4
Q ss_pred CCceEEEEeEeCc-----cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826 2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR 76 (83)
Q Consensus 2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~ 76 (83)
.|+...+.|...+ .|.|.+.|++++..+........ ....|.|..+..+|+|.|.|.+.+..+...
T Consensus 9 ~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 9 STKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 4778899998543 25789999999988775432211 134799999999999999999998877654
Q ss_pred eE
Q psy11826 77 RG 78 (83)
Q Consensus 77 ~~ 78 (83)
..
T Consensus 80 ~~ 81 (92)
T cd05757 80 YN 81 (92)
T ss_pred EE
Confidence 43
No 85
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.50 E-value=6.3e-13 Score=57.74 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=43.9
Q ss_pred CCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 2 LGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
.|+.++|.|.+.+.|. +.+.|++++..+... ...|.|..+ .+|+|.|.|.+.+.
T Consensus 14 ~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 14 QGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------------CCeEEEeec-ccCCEEeEEECCCC
Confidence 6899999999988776 469999999876321 135788888 99999999999875
No 86
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.50 E-value=1.9e-12 Score=58.17 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecc--------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTF--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
.|+.+.|.|.+.+.|.|.+.|++.+..+.. ..++.+. ........|.|.++..+|.|.|.|.+..
T Consensus 11 ~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 11 VGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV----KSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE----eCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 689999999999999999999987753311 1111111 1111245799999999999999999876
No 87
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.48 E-value=1.5e-12 Score=57.53 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=47.3
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
.|+++.|.|.+. .+.+.+.|.++|..+.... ...+. ...|.|.+++.+|+|.|.|.+.+..
T Consensus 10 ~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~---------~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 10 LGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY---------RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE---------CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 589999999975 4678999999999887542 22111 1358999999999999999997653
No 88
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.46 E-value=2.5e-12 Score=56.81 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred CceEEEEeEeCccC--CCeEEEEeCCEEecccceEEE-EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826 3 GRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQV-HEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 3 g~~~~~~C~~~~~~--~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
|+.+.|.|.+.+.+ ...+.|...+........... ...........+.|.|.+++.+|+|.|.|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78899999987655 446799876654321110000 000011123457899999999999999999999888766555
Q ss_pred EE
Q psy11826 80 RT 81 (83)
Q Consensus 80 ~~ 81 (83)
.|
T Consensus 81 ~~ 82 (86)
T cd05862 81 IV 82 (86)
T ss_pred EE
Confidence 44
No 89
>KOG3513|consensus
Probab=99.45 E-value=1.4e-12 Score=76.84 Aligned_cols=73 Identities=26% Similarity=0.464 Sum_probs=57.8
Q ss_pred CCCceEEEEeEeCccCCCeEEEEeCCEE-ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826 1 MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
+.|+.+.|.|.+.|.|.|.+.|.+.+.. ++...... ....+|.|.+++.+|+|.|.|.+.|..|...+..
T Consensus 254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~---------~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~ 324 (1051)
T KOG3513|consen 254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYS---------NYGKVLKIPNVQYEDAGEYECIAENSRGSATHSG 324 (1051)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeee---------ccccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence 3689999999999999999999998764 33322211 1135899999999999999999999999777666
Q ss_pred EEe
Q psy11826 80 RTD 82 (83)
Q Consensus 80 ~~~ 82 (83)
.+.
T Consensus 325 ~v~ 327 (1051)
T KOG3513|consen 325 HVT 327 (1051)
T ss_pred EEE
Confidence 553
No 90
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.45 E-value=2.2e-12 Score=57.25 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccce--EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC-cceeeE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF-AIDRRG 78 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-g~~~~~ 78 (83)
.|+.+.|.|...+ |.+.+.|++++..+..... .+... . ...|.|..++.+|+|.|.|.+.+.. +.....
T Consensus 10 ~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~---~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 10 EGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV---T----EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred CCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE---c----CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 5889999999876 8889999999876554320 11111 0 1248899999999999999998654 344555
Q ss_pred EEE
Q psy11826 79 FRT 81 (83)
Q Consensus 79 ~~~ 81 (83)
+.|
T Consensus 82 ~~l 84 (89)
T cd04979 82 YSL 84 (89)
T ss_pred EEE
Confidence 544
No 91
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.43 E-value=5e-12 Score=52.82 Aligned_cols=63 Identities=27% Similarity=0.513 Sum_probs=45.5
Q ss_pred CceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826 3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA 68 (83)
Q Consensus 3 g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 68 (83)
|+.+.|.|.+ ...+.+.+.|.+++............. ........|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999998 667788999999887655443222111 12222225999999999999999975
No 92
>KOG3513|consensus
Probab=99.41 E-value=1.4e-12 Score=76.78 Aligned_cols=73 Identities=27% Similarity=0.471 Sum_probs=61.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.|..+.+.|...+.|.|.++|.+.+..+....++.+.+ ..+|.|.+++++|+|.|+|.+.|..|.......|
T Consensus 440 ~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e--------dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L 511 (1051)
T KOG3513|consen 440 VGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE--------DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNL 511 (1051)
T ss_pred eCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC--------CCcEEecccCcccCcEEEEEEEcccCccceEEEE
Confidence 47789999999999999999999888666666655543 3579999999999999999999999988776655
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
.
T Consensus 512 ~ 512 (1051)
T KOG3513|consen 512 I 512 (1051)
T ss_pred E
Confidence 4
No 93
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.41 E-value=4.1e-12 Score=56.92 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=49.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEe-cccc-eE------------EEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIEL-TFHK-YF------------QVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~-~~~~-~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
+|+++.|.|...+.+.+.+.|+++++.. .... .. .... .........|.|.+++.+|+|.|.|.
T Consensus 6 ~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgtY~C~ 83 (94)
T cd07690 6 KGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDTYICE 83 (94)
T ss_pred CCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEEEEEE
Confidence 6899999999988899999999766332 2111 11 1000 01112345799999999999999999
Q ss_pred eeCCCcce
Q psy11826 68 ADNPFAID 75 (83)
Q Consensus 68 ~~~~~g~~ 75 (83)
+.|..+..
T Consensus 84 v~~~~~~~ 91 (94)
T cd07690 84 VEDKKEEV 91 (94)
T ss_pred ECCccceE
Confidence 98876543
No 94
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.40 E-value=3.1e-11 Score=52.82 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=49.4
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc--eeeEEEEe
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI--DRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~--~~~~~~~~ 82 (83)
+.|.|.+.+ .|.+.+.|++++..+...................+.|.+......|.+.|.|.+.+.... ....+.|+
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 678999887 688899999999877543211111110111233457888777777889999999886543 34445543
No 95
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.40 E-value=2.4e-11 Score=54.60 Aligned_cols=66 Identities=12% Similarity=0.227 Sum_probs=46.4
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
+|+.+.|.|.+.+.|.+.+.|++.+.... ...++... .......+|.|.+++.+|+|.|.|.+...
T Consensus 11 eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 11 EGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred cCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 68999999999999999999986432211 11122110 11112357999999999999999999864
No 96
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.40 E-value=8.7e-11 Score=51.00 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=55.5
Q ss_pred CCceEEEEeEeCccCCCeEEEEeC-CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.|+.+.|.|.+.+.+.+.+.|+++ +..+........... .. ...|.|..+..+|.|.|.|.+.+..+.....+.
T Consensus 8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS--GS---NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc--CC---eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 589999999998888889999998 766653332222211 11 457999999999999999999988776655555
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 83 l 83 (86)
T smart00410 83 L 83 (86)
T ss_pred E
Confidence 4
No 97
>smart00409 IG Immunoglobulin.
Probab=99.40 E-value=8.7e-11 Score=51.00 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=55.5
Q ss_pred CCceEEEEeEeCccCCCeEEEEeC-CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.|+.+.|.|.+.+.+.+.+.|+++ +..+........... .. ...|.|..+..+|.|.|.|.+.+..+.....+.
T Consensus 8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS--GS---NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc--CC---eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 589999999998888889999998 766653332222211 11 457999999999999999999988776655555
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 83 l 83 (86)
T smart00409 83 L 83 (86)
T ss_pred E
Confidence 4
No 98
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.40 E-value=6.7e-12 Score=55.12 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=47.9
Q ss_pred CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
.|+.++|.|.... .+.+.+.|++++..+.... ....|.|..++.+|+|.|.|.+.+..+..
T Consensus 13 ~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 13 EGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred CCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 6899999999754 5566799999987554211 02469999999999999999999988753
No 99
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.38 E-value=8.1e-12 Score=63.85 Aligned_cols=64 Identities=23% Similarity=0.447 Sum_probs=49.1
Q ss_pred CCceEEEEeEeC-----ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 2 LGRKITFFCMAE-----GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 2 ~g~~~~~~C~~~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
.|+.+.|.|.+. +.|.|.+.|++++..+....+..... . ...|.|.+++.+|+|.|.|.+....
T Consensus 143 ~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~---~----~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 143 SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN---N----NSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC---C----CCEEEECcCCHHhCEEEEEEEEEeE
Confidence 588899999875 34678999999999887544433211 1 2379999999999999999998754
No 100
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.37 E-value=4.8e-12 Score=56.77 Aligned_cols=66 Identities=18% Similarity=0.381 Sum_probs=48.2
Q ss_pred CCceEEEEeE-eCccCCCeEEEEeCCEEecc--cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 2 LGRKITFFCM-AEGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
+|+.+.|.|. ..+.|.|.+.|++++..+.. ..+..+. . ....|.+..++.+|.|.|.|.+.|....
T Consensus 17 eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~----~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 17 EGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS----Q---TNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe----C---CCCcEEEeecCHhhCceeEEEEEecccC
Confidence 5889999997 56889999999998764322 1111111 0 0246999999999999999999987543
No 101
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.35 E-value=4e-11 Score=53.50 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=47.2
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCC--EEecc----cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee-CCCcc
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDD--IELTF----HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD-NPFAI 74 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~g~ 74 (83)
.|+.+.|.|.. +.|.|.+.|++.+ ..... ..+... ....|.|..+..+|+|.|.|.+. +..+.
T Consensus 10 eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 10 ENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred cCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 68899999995 5788999999732 22111 111111 12359999999999999999997 45554
Q ss_pred eeeEEEE
Q psy11826 75 DRRGFRT 81 (83)
Q Consensus 75 ~~~~~~~ 81 (83)
......|
T Consensus 80 ~~~~~~l 86 (91)
T cd05871 80 TLAKYTL 86 (91)
T ss_pred EEEEEEE
Confidence 4444444
No 102
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.32 E-value=9.2e-11 Score=62.86 Aligned_cols=76 Identities=20% Similarity=0.394 Sum_probs=53.7
Q ss_pred CCceEEEEeEeCccCCC---eEEEEeCCEEecccc-----eEEEEE--Ee-cCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 2 LGRKITFFCMAEGFPRP---HITWTKDDIELTFHK-----YFQVHE--WF-LGNNTIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~-----~~~~~~--~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
.|+.+.|.|.+.+.|.+ .+.|.++|..+.... ...... .. .........|.|.+++.+|.|.|.|.+.|
T Consensus 234 ~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n 313 (326)
T PHA02785 234 IGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFT 313 (326)
T ss_pred CCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEe
Confidence 48899999999988864 799999998775421 111110 00 01112346799999999999999999999
Q ss_pred CCcceee
Q psy11826 71 PFAIDRR 77 (83)
Q Consensus 71 ~~g~~~~ 77 (83)
..+....
T Consensus 314 ~~~~~~~ 320 (326)
T PHA02785 314 IPSISKT 320 (326)
T ss_pred ccCceEe
Confidence 8866543
No 103
>KOG4194|consensus
Probab=99.31 E-value=1.1e-11 Score=70.27 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=54.6
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEE-ecc--cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIE-LTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG 78 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~ 78 (83)
.|+.+.+.|.+.|.|.|.|.|.++|.. ++. ..++...+ .+ -.+-|.+++.+|.|.|+|.+.|..|.....
T Consensus 626 tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp--ed-----d~f~Itnvk~eD~GiYtC~A~n~AG~isan 698 (873)
T KOG4194|consen 626 TGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP--ED-----DVFFITNVKIEDQGIYTCTAQNVAGQISAN 698 (873)
T ss_pred cccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC--CC-----CEEEEecccccccceeEEeeeccccceeec
Confidence 588899999999999999999997754 443 22222222 12 257788999999999999999999986654
Q ss_pred EE
Q psy11826 79 FR 80 (83)
Q Consensus 79 ~~ 80 (83)
..
T Consensus 699 At 700 (873)
T KOG4194|consen 699 AT 700 (873)
T ss_pred eE
Confidence 43
No 104
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.28 E-value=3.3e-10 Score=49.32 Aligned_cols=74 Identities=15% Similarity=0.301 Sum_probs=51.1
Q ss_pred EEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc---eeeEEEE
Q psy11826 6 ITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI---DRRGFRT 81 (83)
Q Consensus 6 ~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~---~~~~~~~ 81 (83)
+.|.|... +.|++.+.|++++..+...... ..........++|.+......|.+.|.|.+.|..+. .+....|
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~---~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l 78 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ---QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL 78 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc---ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence 67899964 6899999999999988653210 000111223457999888888899999999997664 3444444
Q ss_pred e
Q psy11826 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
+
T Consensus 79 ~ 79 (80)
T cd05885 79 D 79 (80)
T ss_pred e
Confidence 4
No 105
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.28 E-value=2.4e-10 Score=51.78 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=51.9
Q ss_pred CCCceEEEEeEeC-----------ccCCCeEEEEeCCEEecccce-----EEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826 1 MLGRKITFFCMAE-----------GFPRPHITWTKDDIELTFHKY-----FQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64 (83)
Q Consensus 1 ~~g~~~~~~C~~~-----------~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 64 (83)
+.|+.+.+.|... ......+.|++++........ .++.. ....|.|.++..+|+|.|
T Consensus 13 ~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-------~~~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 13 LAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-------EEDSIWFRPAELQDSGLY 85 (104)
T ss_pred cCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-------eCCEEEEEeCChhhCeEE
Confidence 4689999999951 112347899998744433221 11111 124799999999999999
Q ss_pred EEEeeCCCcceeeEEEEe
Q psy11826 65 ECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 65 ~C~~~~~~g~~~~~~~~~ 82 (83)
.|.+.|........+.|.
T Consensus 86 ~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEECCCCcceEEEEEEE
Confidence 999999887777776664
No 106
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.28 E-value=4.9e-10 Score=50.27 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=45.9
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
+|+.+.|.|.+.+.+.+.+.|++.+..+. ...++... ........|.|.+++.+|+|.|.|.+....
T Consensus 11 ~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 11 EGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred CCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 69999999999888888999986332111 01111110 111123479999999999999999998754
No 107
>KOG4221|consensus
Probab=99.26 E-value=1.3e-10 Score=69.63 Aligned_cols=72 Identities=22% Similarity=0.464 Sum_probs=55.9
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC--CCcceeeEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN--PFAIDRRGF 79 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~--~~g~~~~~~ 79 (83)
.|+.+.|.|.+.+.|.|.+.|.+++..+...+ .++... ..+.|.|.+++..|+|.|+|.+.| ..+...+..
T Consensus 251 ~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~------g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev 323 (1381)
T KOG4221|consen 251 EGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLV------GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEV 323 (1381)
T ss_pred cCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEe------cccceEEeccccccCceEEEEecCCCcccccceEE
Confidence 58999999999999999999999999887654 222221 135799999999999999999998 344444444
Q ss_pred E
Q psy11826 80 R 80 (83)
Q Consensus 80 ~ 80 (83)
.
T Consensus 324 ~ 324 (1381)
T KOG4221|consen 324 T 324 (1381)
T ss_pred E
Confidence 3
No 108
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=3.4e-11 Score=53.98 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCceEEEEeE-eCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCCc
Q psy11826 2 LGRKITFFCM-AEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPFA 73 (83)
Q Consensus 2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g 73 (83)
+|+.+.|.|. ..|.|.|.+.|..++..... ..+..+. ....|.|.++..+|.| .|.|.+.+...
T Consensus 17 eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 17 EGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 5899999997 68999999999976543222 2221111 1247999999999999 79999998654
No 109
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.25 E-value=1.4e-10 Score=50.12 Aligned_cols=65 Identities=23% Similarity=0.456 Sum_probs=49.2
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc-ceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA-IDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g-~~~~~~~ 80 (83)
.|+.+.|.|.+.+.|.+.+.|++++..+..... .+.+..+..+|.|.|.|.+.+..+ .....+.
T Consensus 13 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 13 EGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp TTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 589999999999888899999998866663221 155577888999999999988554 3444555
Q ss_pred E
Q psy11826 81 T 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 78 v 78 (80)
T PF13895_consen 78 V 78 (80)
T ss_dssp E
T ss_pred e
Confidence 4
No 110
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.24 E-value=6.6e-11 Score=53.10 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=47.8
Q ss_pred CCceEEEEeEe-Cc----cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 2 LGRKITFFCMA-EG----FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 2 ~g~~~~~~C~~-~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
.|....+.|.- .+ .+.|.+.|++++..+........ .. .+ ...|.|..+..+|+|.|+|.+.+..+..
T Consensus 9 ~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~--~~---~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 9 TSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SL--KG---STYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred cccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ec--CC---CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 46778899972 23 46679999999988764321111 00 01 2359999999999999999999986654
No 111
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.22 E-value=1.1e-10 Score=62.50 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=49.7
Q ss_pred CCceEEEEeEe-----CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826 2 LGRKITFFCMA-----EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR 76 (83)
Q Consensus 2 ~g~~~~~~C~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~ 76 (83)
.|+.+.+.|.. .|.|.+.+.|++++..... ... ... ...|.+..+..+|+|.|.|.+.|..+...
T Consensus 40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-----~~~--~~~---g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~ 109 (326)
T PHA02785 40 ENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-----IIP--IDN---GSNMLILNPTQSDSGIYICITKNETYCDM 109 (326)
T ss_pred cCCCEEEECCCccccccCCCCceEEEEECCCccce-----EEE--ccC---CceEEEcccCcccCeEEEEEEECCCcceE
Confidence 58889999996 5888899999998743211 111 011 12477889999999999999999987655
Q ss_pred eEEE
Q psy11826 77 RGFR 80 (83)
Q Consensus 77 ~~~~ 80 (83)
..+.
T Consensus 110 ~s~~ 113 (326)
T PHA02785 110 MSLN 113 (326)
T ss_pred EEEE
Confidence 5443
No 112
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.20 E-value=8.1e-10 Score=50.50 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCceEEEEeEeCccC------CCeEEEEeCC-----E-Eecc--cceEEE------EEEecCCCeEEEEEEEccCCCCCC
Q psy11826 2 LGRKITFFCMAEGFP------RPHITWTKDD-----I-ELTF--HKYFQV------HEWFLGNNTIKSKMEIDPATQKDA 61 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~------~~~~~w~~~~-----~-~~~~--~~~~~~------~~~~~~~~~~~~~l~i~~~~~~~~ 61 (83)
.|+.+.|.|.....+ .+.+.|++.. . .+.. ...... .-..........+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999976542 5689999862 1 1110 111100 000001123457899999999999
Q ss_pred eEEEEEeeCCCcceeeEEEEe
Q psy11826 62 GYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 62 g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|.|.|.+.+..+.....+.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~ 101 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELE 101 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEE
Confidence 999999998766655555443
No 113
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=99.18 E-value=5.6e-10 Score=49.98 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=50.5
Q ss_pred CCceEEEEeEeCcc-CC-CeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 2 LGRKITFFCMAEGF-PR-PHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.|+.+.+.|.+.+. |. +.+.|+++|..+..... .......++.....+.|.+......+.+.|.|.+.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 47889999999997 53 57999999988765432 112222222344556788777777789999999988655
No 114
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.15 E-value=1.9e-09 Score=49.28 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=50.3
Q ss_pred CCceEEEEeEeCccC------CCeEEEEeCCEE-----e-c-cc-ceEEEE-----EE-ecCCCeEEEEEEEccCCCCCC
Q psy11826 2 LGRKITFFCMAEGFP------RPHITWTKDDIE-----L-T-FH-KYFQVH-----EW-FLGNNTIKSKMEIDPATQKDA 61 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~------~~~~~w~~~~~~-----~-~-~~-~~~~~~-----~~-~~~~~~~~~~l~i~~~~~~~~ 61 (83)
.|++++|.|.....| ...|.|++.... . . .. ...... .. .........+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999875542 356999985311 0 0 00 000000 00 001112245799999999999
Q ss_pred eEEEEEeeCCCcceeeEEEEe
Q psy11826 62 GYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 62 g~y~C~~~~~~g~~~~~~~~~ 82 (83)
|.|.|.+.+..+.....+.|+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~ 101 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALR 101 (106)
T ss_pred EEEEEEEEecccceEEEEEEE
Confidence 999999998887776666554
No 115
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.14 E-value=2e-09 Score=49.75 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=49.2
Q ss_pred CCceEEEEeEeCccC------------CCeEEEEeCC--EE--ec--ccceEEEE-----EEecC---CCeEEEEEEEcc
Q psy11826 2 LGRKITFFCMAEGFP------------RPHITWTKDD--IE--LT--FHKYFQVH-----EWFLG---NNTIKSKMEIDP 55 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~------------~~~~~w~~~~--~~--~~--~~~~~~~~-----~~~~~---~~~~~~~l~i~~ 55 (83)
+|++++|.|...... .+.+.|++.. .. +. ........ +.... .......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 589999999976432 4589999742 11 11 00111100 11111 122457899999
Q ss_pred CCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 56 ATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 56 ~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
++.+|+|.|.|.+.+..........|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l 106 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEV 106 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEE
Confidence 99999999999999776655554444
No 116
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.12 E-value=5.2e-10 Score=57.35 Aligned_cols=81 Identities=15% Similarity=0.298 Sum_probs=51.9
Q ss_pred CCCceEEEEeEeCccC-----------CCeEEEEeCCEEeccc---ceEEEEEEecCC-CeEEEEEEEccCCCCCCeEEE
Q psy11826 1 MLGRKITFFCMAEGFP-----------RPHITWTKDDIELTFH---KYFQVHEWFLGN-NTIKSKMEIDPATQKDAGYYE 65 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~-----------~~~~~w~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~ 65 (83)
.+|+.+.|.|.+.+.+ .+.+.|++.+...... ......+..... ......|.|.+++.+|+|.|.
T Consensus 35 ~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~ 114 (227)
T PHA02826 35 KFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYI 114 (227)
T ss_pred cCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEE
Confidence 3689999999986643 4589999987542110 000000000000 011347999999999999999
Q ss_pred EEeeCCCcceeeEEEE
Q psy11826 66 CVADNPFAIDRRGFRT 81 (83)
Q Consensus 66 C~~~~~~g~~~~~~~~ 81 (83)
|.+.|..+.......|
T Consensus 115 C~a~N~~~~~~~~i~L 130 (227)
T PHA02826 115 CTISSGNICEESTIRL 130 (227)
T ss_pred EEEEECCcceEEEEEE
Confidence 9999988776665554
No 117
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.11 E-value=1.7e-09 Score=46.06 Aligned_cols=57 Identities=35% Similarity=0.589 Sum_probs=39.4
Q ss_pred EEEEeEeCccC-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 6 ITFFCMAEGFP-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 6 ~~~~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
+.|.|.+.+.+ .+.+.|+ ....... ..........+.|.+..+..+|.|.|.|.+.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN-------SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE-------EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee-------eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 89999998877 7789999 1111110 00111223356899999999999999999875
No 118
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.09 E-value=7.9e-09 Score=46.72 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=29.6
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
..+|.|.+++.+|+|.|.|.+.+..+..+..+.|.
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~ 98 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELK 98 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEE
Confidence 46899999999999999999998777777666654
No 119
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.08 E-value=1.1e-08 Score=47.16 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=49.2
Q ss_pred CCceEEEEeEeCccC----------CCeEEEEeC--CEEecc----cceEEEE-----EEec---CCCeEEEEEEEccCC
Q psy11826 2 LGRKITFFCMAEGFP----------RPHITWTKD--DIELTF----HKYFQVH-----EWFL---GNNTIKSKMEIDPAT 57 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~----------~~~~~w~~~--~~~~~~----~~~~~~~-----~~~~---~~~~~~~~l~i~~~~ 57 (83)
+|+++.|.|.....+ ...+.|++. +..... ....... +... .......+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 589999999975433 356899984 221110 0000000 0001 112234679999999
Q ss_pred CCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 58 QKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 58 ~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
.+|+|.|.|.+.......+..+.|+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~ 105 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLE 105 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEE
Confidence 9999999999987655555555543
No 120
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=99.07 E-value=7.5e-09 Score=45.48 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=45.1
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
+.+.|.+.+ .|...+.|+++|..+............+......+.|.+..-...+...|.|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 578999877 677789999999987643322211111122344567777655566678899999876543
No 121
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=99.07 E-value=5.7e-09 Score=45.71 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=43.5
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
+.+.|.+.+ .|.+.+.|++++..+.... ..............+.|.+......+...|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 578999866 5888999999998876432 1111111112234456666555555678999999986543
No 122
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.06 E-value=1.1e-08 Score=45.98 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
+|+.+.|.|.+.......+.|++.+..+. ...++.... . .....+|.|..++.+|.|.|.|.+..
T Consensus 11 ~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~---~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 11 EGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVN---F-SSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEe---C-CCCEEEEEECcCCcccCEEEEEEEEc
Confidence 69999999999887777788887664321 122232221 0 12245799999999999999998875
No 123
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.05 E-value=3.9e-09 Score=46.52 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=43.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 69 (83)
.|+.+.|.|..... .+.+.|+.++..+....+.... ...|.|..++.+|+|.|.|.+.
T Consensus 10 ~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 10 PGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred cCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe
Confidence 58889999997554 5699999999887653322221 1247788999999999999986
No 124
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=99.05 E-value=1.1e-08 Score=44.93 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=45.4
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecC-CCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLG-NNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
+.+.|.+.+ .|.+.|.|++++..+..... ........ .....+.|.+......+...|.|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 678999877 58889999999988765332 22221111 2223456777666666778999999987543
No 125
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.04 E-value=1.3e-08 Score=47.33 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=43.9
Q ss_pred CCceEEEEeEeCcc----CCCeEEEEeC---------------CEEecc-cceEE-EEEEecCCCeEEEEEEEccCCCCC
Q psy11826 2 LGRKITFFCMAEGF----PRPHITWTKD---------------DIELTF-HKYFQ-VHEWFLGNNTIKSKMEIDPATQKD 60 (83)
Q Consensus 2 ~g~~~~~~C~~~~~----~~~~~~w~~~---------------~~~~~~-~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~ 60 (83)
.|+.+.|.|..... +...+.|... +..... ...++ ...+.........+|.|.+++.+|
T Consensus 12 ~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD 91 (116)
T cd05879 12 VGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTD 91 (116)
T ss_pred cCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCccc
Confidence 58999999997553 3457899331 111110 00000 001111122345789999999999
Q ss_pred CeEEEEEeeCCCc
Q psy11826 61 AGYYECVADNPFA 73 (83)
Q Consensus 61 ~g~y~C~~~~~~g 73 (83)
.|.|.|.+.|.-+
T Consensus 92 ~G~Y~C~v~n~p~ 104 (116)
T cd05879 92 NGTFTCDVKNPPD 104 (116)
T ss_pred CEEEEEEEEcCCC
Confidence 9999999998654
No 126
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.04 E-value=1.8e-08 Score=46.20 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=45.8
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEE--e---c---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIE--L---T---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
.|+.+.|.|...+.+.+.+.|++.... . . ...++.+. .........|.|.+++.+|+|.|.|.
T Consensus 12 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~~DsG~Y~C~ 88 (109)
T cd04983 12 EGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQLSDSAVYFCA 88 (109)
T ss_pred CCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCHHHCEEEEEE
Confidence 689999999988777888999974311 0 0 00111111 11112356899999999999999999
Q ss_pred eeCCC
Q psy11826 68 ADNPF 72 (83)
Q Consensus 68 ~~~~~ 72 (83)
+.+..
T Consensus 89 ~~~~~ 93 (109)
T cd04983 89 LSESG 93 (109)
T ss_pred EecCC
Confidence 98654
No 127
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=99.02 E-value=2.1e-08 Score=46.27 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=48.4
Q ss_pred CCceEEEEeEeCccC-------CCeEEEEeCC-----EEec----ccceEEE-------EEEec-CCCeEEEEEEEccCC
Q psy11826 2 LGRKITFFCMAEGFP-------RPHITWTKDD-----IELT----FHKYFQV-------HEWFL-GNNTIKSKMEIDPAT 57 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~-------~~~~~w~~~~-----~~~~----~~~~~~~-------~~~~~-~~~~~~~~l~i~~~~ 57 (83)
+|..+.|.|.....| .+.|.|.+.. .... ....... ..... ......++|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 478899999954322 4689998741 1111 0000000 01100 112346789999999
Q ss_pred CCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 58 QKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 58 ~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
.+|+|.|.|.+..........+.|
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L 104 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPL 104 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEE
Confidence 999999999998866555555544
No 128
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.01 E-value=2.7e-08 Score=44.26 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=49.4
Q ss_pred CceEEEEeEeCccCCCeEEEEeCCEEecccc-------eEEEE-EEecCC--CeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVH-EWFLGN--NTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-------~~~~~-~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
|+.++|.|.........+.|++......... ..... ...... .....+|.|.+++.+|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7889999997776666899998653322110 00000 000000 0012579999999999999999998876
Q ss_pred c-ceeeEEEEe
Q psy11826 73 A-IDRRGFRTD 82 (83)
Q Consensus 73 g-~~~~~~~~~ 82 (83)
+ .....+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 4 345555553
No 129
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.98 E-value=3.6e-08 Score=43.18 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=44.8
Q ss_pred EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
+.+.|.+.+ .|.+.|.|++++..+...... ...........++|.|..-...|...|.|.+.|..-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 578999765 788899999999888764221 111122344567788865555556779999988653
No 130
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.98 E-value=2.2e-08 Score=45.02 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred ceEEEEeEeCccC---CCeEEEEeCCEE----ec---cc------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 4 RKITFFCMAEGFP---RPHITWTKDDIE----LT---FH------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 4 ~~~~~~C~~~~~~---~~~~~w~~~~~~----~~---~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
+.+.|.|.....+ ...+.|++.... +. .. ......-..........+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999876543 346899985421 00 00 00000000001111356899999999999999999
Q ss_pred eeC-CCcceeeEEEEe
Q psy11826 68 ADN-PFAIDRRGFRTD 82 (83)
Q Consensus 68 ~~~-~~g~~~~~~~~~ 82 (83)
+.. ..|.......|.
T Consensus 81 v~~~~~g~~~~~~~l~ 96 (98)
T cd05718 81 FATFPQGNRQKVTTLT 96 (98)
T ss_pred EEeCCCCcEEEEEEEE
Confidence 864 567766666553
No 131
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.97 E-value=1.4e-08 Score=45.85 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCCceEEEEeEeCc-cCCCeEEEEeCCEEecccc------eEEEE------EEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 1 MLGRKITFFCMAEG-FPRPHITWTKDDIELTFHK------YFQVH------EWFLGNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 1 ~~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
.+|++++|.|.... .....+.|++....+.... ..... +... .....+|.|.+++.+|+|.|.|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF--SQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe--cCCceeEEECCCchHHCEEEEEE
Confidence 47999999998654 4455789998653322110 00000 0000 11135799999999999999999
Q ss_pred eeCCCcce-eeEEEEe
Q psy11826 68 ADNPFAID-RRGFRTD 82 (83)
Q Consensus 68 ~~~~~g~~-~~~~~~~ 82 (83)
.....+.. ...+.|.
T Consensus 80 v~~~~~~~~~~~f~L~ 95 (97)
T cd05775 80 INTKNGVTITKEFTLH 95 (97)
T ss_pred EEcCCCCeEEEEEEEE
Confidence 98776653 5566654
No 132
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.94 E-value=9.5e-09 Score=45.84 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=44.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
.|++++|.|... .+.....|+++|........ ........+.|..++.+|+|.|+|...+.
T Consensus 15 ~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~--------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 15 LGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP--------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCcEEEEEecC-CCCCEEEEEECCCCcccccc--------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 589999999864 56667889988864332100 01112457999999999999999999875
No 133
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.94 E-value=4.2e-08 Score=44.90 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecc--------c-ceEEEEEEecCCC--eEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTF--------H-KYFQVHEWFLGNN--TIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~-~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
+|+++.|.|.........+.|++....... . ......+...+.. ..+.+|.|.+++.+|.|.|.|.+.+
T Consensus 12 ~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~ 91 (105)
T cd05774 12 EGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTIT 91 (105)
T ss_pred CCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEe
Confidence 689999998754444448899995321111 0 0000000000110 1124799999999999999999988
Q ss_pred CC-cceeeEEEEe
Q psy11826 71 PF-AIDRRGFRTD 82 (83)
Q Consensus 71 ~~-g~~~~~~~~~ 82 (83)
.. ........+.
T Consensus 92 ~~~~~~~~~v~l~ 104 (105)
T cd05774 92 TNFQVEQATVHLQ 104 (105)
T ss_pred CCccEEEEEEEEE
Confidence 76 3445455443
No 134
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.93 E-value=3.1e-08 Score=45.02 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=45.3
Q ss_pred CCceEEEEeEeCcc-CCCeEEEEeCCE--E---ecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826 2 LGRKITFFCMAEGF-PRPHITWTKDDI--E---LTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63 (83)
Q Consensus 2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 63 (83)
.|+.+.|.|..... +...+.|++... . +.. ..+..... .......+|.|.+++.+|.|.
T Consensus 5 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 5 EGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred CCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHHCEE
Confidence 58999999998765 667899997432 1 100 01111111 111134579999999999999
Q ss_pred EEEEeeCCCc
Q psy11826 64 YECVADNPFA 73 (83)
Q Consensus 64 y~C~~~~~~g 73 (83)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 135
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.91 E-value=9.2e-08 Score=44.49 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.5
Q ss_pred EEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 47 IKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 47 ~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
..++|.|.+++.+|+|.|.|.+..........+.|+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~ 112 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD 112 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence 457899999999999999999988777666655554
No 136
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.90 E-value=8.2e-08 Score=43.27 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=46.9
Q ss_pred CceEEEEeEeCccCC-CeEEEEeCCE----Eec---c------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826 3 GRKITFFCMAEGFPR-PHITWTKDDI----ELT---F------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA 68 (83)
Q Consensus 3 g~~~~~~C~~~~~~~-~~~~w~~~~~----~~~---~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 68 (83)
|++++|.|....... -.+.|++... .+. . ...+.-...........++|.|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 788999998554332 2589987421 110 0 0011101111111223567999999999999999998
Q ss_pred e-CCCcceeeEEEE
Q psy11826 69 D-NPFAIDRRGFRT 81 (83)
Q Consensus 69 ~-~~~g~~~~~~~~ 81 (83)
. .+.|.......|
T Consensus 81 ~~~p~g~~~~~~~L 94 (97)
T cd05846 81 NTFPDGSKSGTMCL 94 (97)
T ss_pred EeCCCCCeeeEEEE
Confidence 6 466666555554
No 137
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.85 E-value=2e-07 Score=38.57 Aligned_cols=66 Identities=33% Similarity=0.508 Sum_probs=45.4
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
+.+.|.+.+.+.+.+.|++.+......... ..............|.+..++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 367899888777889999987665443211 111111223345679999999999999999998765
No 138
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.85 E-value=6.1e-08 Score=44.59 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=44.0
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCE--Eecc-----cceEEEE------EEec-CCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDI--ELTF-----HKYFQVH------EWFL-GNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~--~~~~-----~~~~~~~------~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
+|++++|.|...+ +.+.+.|++... .+.. ....... .... ........|.|.+++.+|+|.|.|.
T Consensus 12 ~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca 90 (110)
T cd05899 12 RGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCA 90 (110)
T ss_pred CCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEE
Confidence 6899999999877 677899998431 1110 0000000 0000 1111345799999999999999999
Q ss_pred eeCCC
Q psy11826 68 ADNPF 72 (83)
Q Consensus 68 ~~~~~ 72 (83)
+.+..
T Consensus 91 ~~~~~ 95 (110)
T cd05899 91 SSLGG 95 (110)
T ss_pred eeCCC
Confidence 87643
No 139
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.83 E-value=1.1e-07 Score=42.86 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=42.7
Q ss_pred CCceEEEEeEeCcc--CCCeEEEEeCCE--Eecccce-------EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 2 LGRKITFFCMAEGF--PRPHITWTKDDI--ELTFHKY-------FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 2 ~g~~~~~~C~~~~~--~~~~~~w~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
+|+++.|.|..... ....+.|++... ....... ................|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 5 PGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 68999999997654 456799987321 1110000 000001111111345799999999999999999875
Q ss_pred C
Q psy11826 71 P 71 (83)
Q Consensus 71 ~ 71 (83)
.
T Consensus 85 ~ 85 (98)
T cd04984 85 S 85 (98)
T ss_pred C
Confidence 3
No 140
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.80 E-value=2.2e-07 Score=40.00 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=42.8
Q ss_pred EEEEeEeCcc-CC-CeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 6 ITFFCMAEGF-PR-PHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 6 ~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
+.|.|.+.++ |. ..+.|+++|..+.... ........+......+.|.+......+...|.|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5789999886 44 4789999998643221 111112122334456678776666667789999987643
No 141
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.80 E-value=2.2e-07 Score=41.15 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=43.9
Q ss_pred CceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 3 g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
|+.+.+.|.+ .++|.|.+.|+.++..+...................+.|.+..-...+...+.|.+.+.....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 4588999975 468999999999887772211111111111123345677776544445677899998765443
No 142
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.78 E-value=5e-08 Score=44.59 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCceEEEEeEeCccC-CCeEEEEeCC--EE---ecc-cceEE---EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 2 LGRKITFFCMAEGFP-RPHITWTKDD--IE---LTF-HKYFQ---VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~-~~~~~w~~~~--~~---~~~-~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
.|+.++|.|...+.. ...+.|++.. .. +.. ..... ..............|.|.+++.+|+|.|.|.+.+.
T Consensus 14 ~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 14 PGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 589999999987655 5679998732 11 110 00000 00011111122456999999999999999998754
No 143
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.77 E-value=2.2e-07 Score=43.10 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=43.1
Q ss_pred CCceEEEEeEeCc--cCCCeEEEEeC--CEEe---c---c-----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826 2 LGRKITFFCMAEG--FPRPHITWTKD--DIEL---T---F-----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60 (83)
Q Consensus 2 ~g~~~~~~C~~~~--~~~~~~~w~~~--~~~~---~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 60 (83)
+|+.+.|.|...+ .+.+.+.|++. +... . . ..++.... ........|.|.+++.+|
T Consensus 12 ~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~~D 88 (116)
T cd04982 12 ESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK---DVGKSTSTLTIQNLEKED 88 (116)
T ss_pred CCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE---ECCCCEEEEEEEECCHHH
Confidence 5899999999876 67788999983 2111 0 0 00111100 011124579999999999
Q ss_pred CeEEEEEeeC
Q psy11826 61 AGYYECVADN 70 (83)
Q Consensus 61 ~g~y~C~~~~ 70 (83)
+|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999999864
No 144
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.77 E-value=4.6e-07 Score=41.09 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEEEEEccCCCCCCeEEEEEeeC-CCcceeeEEEEe
Q psy11826 47 IKSKMEIDPATQKDAGYYECVADN-PFAIDRRGFRTD 82 (83)
Q Consensus 47 ~~~~l~i~~~~~~~~g~y~C~~~~-~~g~~~~~~~~~ 82 (83)
...+|.|.+++.+|+|.|.|.+.+ ..|..+....|.
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~ 98 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLT 98 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEE
Confidence 356799999999999999999986 666666555553
No 145
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.75 E-value=2.4e-07 Score=40.86 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=42.0
Q ss_pred CCCceEEEEeEeCccC--CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 1 MLGRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
+.|+.+++.|.....+ .+.++|...+........ ....+|.+..+...|.|.+.|.+...
T Consensus 12 L~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 12 LSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred ecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEEC
Confidence 4699999999975544 448999875543221110 00236888999999999999999644
No 146
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.72 E-value=1.2e-06 Score=39.74 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=29.6
Q ss_pred EEEEEEEccCCCCCCeEEEEEeeC-CCcceeeEEEEe
Q psy11826 47 IKSKMEIDPATQKDAGYYECVADN-PFAIDRRGFRTD 82 (83)
Q Consensus 47 ~~~~l~i~~~~~~~~g~y~C~~~~-~~g~~~~~~~~~ 82 (83)
..++|.|.+++.+|.|.|.|.+.+ ..|..+....|.
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~ 97 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLT 97 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 347899999999999999999998 677766666553
No 147
>KOG4222|consensus
Probab=98.72 E-value=7.5e-08 Score=58.17 Aligned_cols=70 Identities=24% Similarity=0.450 Sum_probs=52.6
Q ss_pred CCceEEEEeE-eCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826 2 LGRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~ 77 (83)
.|+.+.++|. ..+.|.|.+.|.++|..+.....-.+... . ...|.|.++.++|.|.|.|.++|..|....
T Consensus 145 ~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li--s----gG~LlIsnvrksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 145 VGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI--S----GGNLLISNVRKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred ccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe--c----CCcEEEeccccCCCceeeeeeccccccccc
Confidence 4788999998 46889999999999988773221111110 1 236999999999999999999999887543
No 148
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.69 E-value=8.1e-07 Score=40.08 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=47.6
Q ss_pred ceEEEEeEeCcc-CCCeEEEEeCCE----Eecc-c--------ceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826 4 RKITFFCMAEGF-PRPHITWTKDDI----ELTF-H--------KYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVA 68 (83)
Q Consensus 4 ~~~~~~C~~~~~-~~~~~~w~~~~~----~~~~-~--------~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 68 (83)
+++.|.|..... ....|.|.+... .+.. . ..+. .... .......++|.|.+++.+|.|.|.|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~-~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSF-KNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEE-cCCCCCccEEEEeCCCccccEEEEEEE
Confidence 468899997542 234689987421 1110 0 0000 0011 112233568999999999999999997
Q ss_pred e-CCCcceeeEEEEe
Q psy11826 69 D-NPFAIDRRGFRTD 82 (83)
Q Consensus 69 ~-~~~g~~~~~~~~~ 82 (83)
. .+.|+......|.
T Consensus 80 ~tfP~G~~~~~~~l~ 94 (96)
T cd05887 80 VTFPLGNTQSSTTVT 94 (96)
T ss_pred EeCCCCCeeEEEEEE
Confidence 4 6788877776654
No 149
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.69 E-value=6.9e-07 Score=40.31 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=28.9
Q ss_pred EEEEEEEccCCCCCCeEEEEEee-CCCcceeeEEEE
Q psy11826 47 IKSKMEIDPATQKDAGYYECVAD-NPFAIDRRGFRT 81 (83)
Q Consensus 47 ~~~~l~i~~~~~~~~g~y~C~~~-~~~g~~~~~~~~ 81 (83)
..++|.|.+++.+|.|.|.|.+. .+.|...+.+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 35789999999999999999996 467887776655
No 150
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.68 E-value=4.8e-07 Score=42.05 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.8
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.++|.|..++.+|+|.|.|.+.+..+
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 46799999999999999999997544
No 151
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.66 E-value=7.6e-07 Score=40.18 Aligned_cols=73 Identities=12% Similarity=0.258 Sum_probs=43.8
Q ss_pred CCceEEEEeEeCcc-CCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 2 LGRKITFFCMAEGF-PRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 2 ~g~~~~~~C~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
.|+.+++.|.+.++ .++ .+.|.+++...............+..+...+.|.+..-...+...|.|.+......
T Consensus 13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred cCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 36789999999998 444 47999987433211101111122233445566777655444566899999876543
No 152
>KOG4221|consensus
Probab=98.65 E-value=1.7e-07 Score=57.02 Aligned_cols=64 Identities=28% Similarity=0.503 Sum_probs=52.3
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.|+.+.|.|.+.+.|-|.+.|.+++..++..+++..-. ...|.|..+...|.|.|.|.+.+..-
T Consensus 154 ~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp--------sG~L~I~~~qp~d~g~yrc~vt~g~~ 217 (1381)
T KOG4221|consen 154 YGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP--------SGALEISGLQPSDTGEYRCVVTGGAS 217 (1381)
T ss_pred cCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC--------CCcEEecccccCCCceEEEEEecCCc
Confidence 58889999999999999999999998777665433222 24799999999999999999987543
No 153
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.65 E-value=8.4e-07 Score=39.72 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=40.4
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
++.+.+.|.+.|+.++ .+.|.+++........ .......+......+.|.+.. .+...|.|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence 5678999999996444 7899999863332211 111111112223344555543 477899999976543
No 154
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.62 E-value=1.7e-06 Score=40.21 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.6
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.++|.|.+++.+|.|.|.|.+.+.-.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 46799999999999999999987544
No 155
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.62 E-value=2.4e-06 Score=40.86 Aligned_cols=72 Identities=15% Similarity=0.336 Sum_probs=44.4
Q ss_pred CCceEEEEeEeCccCC--CeEEEEeCCEEecc-----cceE--EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 2 LGRKITFFCMAEGFPR--PHITWTKDDIELTF-----HKYF--QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
.|+.+.+.|.+.+.++ +.+.|++++..... .... ......+......+.|.+......+...|.|.+.+..
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 3677899999998644 37899998754221 1111 1111222334455678877666556779999997754
Q ss_pred c
Q psy11826 73 A 73 (83)
Q Consensus 73 g 73 (83)
.
T Consensus 132 l 132 (139)
T cd05771 132 L 132 (139)
T ss_pred C
Confidence 3
No 156
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.62 E-value=1.6e-06 Score=39.09 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=43.5
Q ss_pred CCceEEEEeEeCc-cCCCeEEEEeCCEE-----ec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 2 LGRKITFFCMAEG-FPRPHITWTKDDIE-----LT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
+|+++.+.|.... .....+.|++.... +. ...+..+. .........|.|.+++.+|+|.|.|.
T Consensus 6 ~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 6 LGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT---DDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred eCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE---ecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5899999999764 35567899974321 10 00111111 11122346799999999999999998
Q ss_pred eeCCC
Q psy11826 68 ADNPF 72 (83)
Q Consensus 68 ~~~~~ 72 (83)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87643
No 157
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.60 E-value=7.5e-07 Score=40.05 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=44.6
Q ss_pred ceEEEEeEeCccCC--CeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 4 RKITFFCMAEGFPR--PHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 4 ~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
+.+.|.|.+.++.+ ..+.|.++|..+.... ........++.+...+.|.+..-...+...|.|.+.......
T Consensus 15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 45789999998644 3579999998763321 111111112233445567776555556788999998765543
No 158
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.60 E-value=1.2e-06 Score=43.65 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=45.2
Q ss_pred CCceEEEEeEeC-ccCCCeEEEEeCCEEecc--cceEEEE-----EEe-cCCCeEEEEEEEccCCCCCCeEEEEEeeC-C
Q psy11826 2 LGRKITFFCMAE-GFPRPHITWTKDDIELTF--HKYFQVH-----EWF-LGNNTIKSKMEIDPATQKDAGYYECVADN-P 71 (83)
Q Consensus 2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~--~~~~~~~-----~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~-~ 71 (83)
+|+.+.|.|... +...+.+.|++....+.. .....+. +.. .......+.|.|.+++.+|+|.|.|...- +
T Consensus 29 ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp 108 (189)
T PHA02987 29 EHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLL 108 (189)
T ss_pred CCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecC
Confidence 578899999974 666788999985432211 0000000 000 11122346899999999999999999863 4
Q ss_pred Cc
Q psy11826 72 FA 73 (83)
Q Consensus 72 ~g 73 (83)
.|
T Consensus 109 ~G 110 (189)
T PHA02987 109 SK 110 (189)
T ss_pred CC
Confidence 44
No 159
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.60 E-value=3.8e-06 Score=38.88 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=42.6
Q ss_pred CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecC-CCeEEEEEEEccCCCCCC-eEEEEEeeCCC
Q psy11826 2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLG-NNTIKSKMEIDPATQKDA-GYYECVADNPF 72 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~ 72 (83)
.|+.++|.|.+.++.+ ..+.|+++|..+..... ......+. .+...+.|.+... ..|. ..|.|.+....
T Consensus 20 ~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 20 PGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCC
Confidence 3667899999988644 47899999988764221 22221121 2334556766643 3443 45999998754
No 160
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.59 E-value=2.9e-06 Score=38.55 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCceEEEEeEeCc-cCCCe--EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCC-eEEEEEeeCCCcc
Q psy11826 2 LGRKITFFCMAEG-FPRPH--ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA-GYYECVADNPFAI 74 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~g~ 74 (83)
+|+.+++.|.+.+ .|.+. |.|++++..+....... .........+++.+. +.+.|. -.|+|.+.+....
T Consensus 15 eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 15 VGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 6899999999876 67776 69999998876432110 000112224566665 445565 5899999986654
No 161
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.58 E-value=3e-06 Score=37.13 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=44.6
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEE-EecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
++.+.+.|.+.++.+. .+.|.+++..+.......... ..++.+...+.|.+. ..+...|.|.+.....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 6789999999885443 589999999887544322222 122334455567666 4556689999976543
No 162
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.57 E-value=3.3e-06 Score=37.90 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=41.8
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
|+...|.|.+.++.++ .+.|.++|..+.........+..+..+...+.|.+. .++...|.|.+....
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 4456899999996554 469999999876222222222222333344555554 456778999998743
No 163
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.57 E-value=6.4e-07 Score=40.84 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=44.0
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEe----cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWF----LGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
++.+++.|.+.|+.++ .+.|.++|..+............ +..+...+.|.+..-...+...|.|.+.....
T Consensus 16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 5679999999996554 46999999876543211111111 12233455677755444556779999987543
No 164
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.54 E-value=2.7e-06 Score=38.21 Aligned_cols=62 Identities=16% Similarity=0.338 Sum_probs=41.6
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 69 (83)
.|++++|.|.... ....+.|++++.......... .......+.+.|..++.+|+|.|.|...
T Consensus 14 ~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~-----~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 14 SGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYE-----KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCCeEEEEEecCC-CCCEEEEEECCCCCCceeccc-----ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 5899999998654 445789999876432210000 0012224578999999999999999864
No 165
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.54 E-value=1.7e-06 Score=39.29 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=44.9
Q ss_pred CceEEEEeEeCccCC--CeEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
++.+.+.|.+.++.+ ..+.|+++|..+...... ......+..+...+.|.+......+...|.|.+....
T Consensus 17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 17 SGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred CCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 566899999988543 468999999887533211 1111113334455667776655556788999998754
No 166
>KOG4194|consensus
Probab=98.54 E-value=2.1e-07 Score=53.71 Aligned_cols=72 Identities=25% Similarity=0.524 Sum_probs=54.1
Q ss_pred CCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 2 LGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
.|+++.+.|.+.+.|+ |.+.|++.+.++....+... .++ .--+.+.....+|.|.|+|...+..|.....+.
T Consensus 720 ~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f---~d~----dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~ 792 (873)
T KOG4194|consen 720 VGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF---PDG----DQLLVVKENLVEDAGIYTCEMSNTLGTERIHIC 792 (873)
T ss_pred ecceEEEEEecCCCCCCccccccCCCCceEEeecccC---CCC----CeEEEEEehhhhhcceEEEEEEeeccceeeEEE
Confidence 5888999999999888 99999998887765432111 111 235777888899999999999998887655443
No 167
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.52 E-value=4e-06 Score=38.44 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCceEEEEeEeCcc-CCCeEEEEeCCEE-----ec-----cc-ceEE--------EEEEecCCCeEEEEEEEccCCCCCC
Q psy11826 2 LGRKITFFCMAEGF-PRPHITWTKDDIE-----LT-----FH-KYFQ--------VHEWFLGNNTIKSKMEIDPATQKDA 61 (83)
Q Consensus 2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~-----~~-----~~-~~~~--------~~~~~~~~~~~~~~l~i~~~~~~~~ 61 (83)
.|++++|.|..... ....+.|++.... +. .. .... ..............|.|.+++.+|+
T Consensus 5 ~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds 84 (107)
T cd07700 5 TNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDS 84 (107)
T ss_pred CCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHC
Confidence 68999999997653 3457999973221 00 00 0000 0000001112234699999999999
Q ss_pred eEEEEEeeC
Q psy11826 62 GYYECVADN 70 (83)
Q Consensus 62 g~y~C~~~~ 70 (83)
|.|.|...+
T Consensus 85 g~YyCa~~~ 93 (107)
T cd07700 85 GTYFCMTVG 93 (107)
T ss_pred EEEEEeEcC
Confidence 999998763
No 168
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.51 E-value=1.5e-06 Score=39.70 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCE----Ee---c---ccceEE-------EEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDI----EL---T---FHKYFQ-------VHEWFLGNNTIKSKMEIDPATQKDAGYY 64 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~----~~---~---~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 64 (83)
.|+.++|.|.........+.|++... .+ . ...... ..............|.|..++.+|+|.|
T Consensus 5 ~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsgtY 84 (104)
T cd05720 5 LGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEGYY 84 (104)
T ss_pred CCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCEEE
Confidence 68999999997655456789997332 11 0 000000 0001111111244699999999999999
Q ss_pred EEEeeC
Q psy11826 65 ECVADN 70 (83)
Q Consensus 65 ~C~~~~ 70 (83)
.|.+.+
T Consensus 85 ~Ca~~~ 90 (104)
T cd05720 85 FCSVAS 90 (104)
T ss_pred EEEEcc
Confidence 998764
No 169
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.48 E-value=2.3e-06 Score=39.10 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=43.2
Q ss_pred CCceEEEEeEeC-ccCCCeEEEEeCCE-----Eec-cc-ceEEEEEE--e-------cCCCeEEEEEEEccCCCCCCeEE
Q psy11826 2 LGRKITFFCMAE-GFPRPHITWTKDDI-----ELT-FH-KYFQVHEW--F-------LGNNTIKSKMEIDPATQKDAGYY 64 (83)
Q Consensus 2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~-----~~~-~~-~~~~~~~~--~-------~~~~~~~~~l~i~~~~~~~~g~y 64 (83)
+|+.+.|.|... ......+.|++... .+. .. ........ . ........+|.|.+++.+|+|.|
T Consensus 15 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y 94 (114)
T PF07686_consen 15 EGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTY 94 (114)
T ss_dssp TTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEE
T ss_pred cCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEE
Confidence 689999999987 44556899997221 111 00 00000000 0 01112245799999999999999
Q ss_pred EEEeeCC
Q psy11826 65 ECVADNP 71 (83)
Q Consensus 65 ~C~~~~~ 71 (83)
.|.+...
T Consensus 95 ~C~v~~~ 101 (114)
T PF07686_consen 95 FCQVSTS 101 (114)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9999876
No 170
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.48 E-value=5.7e-06 Score=37.20 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=42.7
Q ss_pred CCceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.|+..++.|.+.++.++ .+.|+++|..+..... ....+..+......+.|.+. .++...|.|.+.....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence 36778999999986444 5799999987665311 11122212223344556554 3456789999987543
No 171
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.45 E-value=6.3e-06 Score=37.09 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=42.0
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
++..++.|.+.|+.++ .+.|.++|..+..... .......+..+...+.|.+.. ++...|.|.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 3447899999996543 5799999988754321 122222233344455676654 45568999997754
No 172
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.45 E-value=5.2e-06 Score=38.52 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCceEEEEeEeCcc-CCCeEEEEeCC--EEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826 2 LGRKITFFCMAEGF-PRPHITWTKDD--IELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66 (83)
Q Consensus 2 ~g~~~~~~C~~~~~-~~~~~~w~~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 66 (83)
.|+.+.|.|..... ....+.|++.. ..+. . ..++.... ........|.|.+++.+|+|.|.|
T Consensus 13 ~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~Dsg~Y~C 89 (116)
T cd07706 13 VGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF---QKAQKSISLTISALQLEDSAKYFC 89 (116)
T ss_pred CCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE---eccCCEEEEEECCCCHHHCEEEEE
Confidence 58999999997643 45678999732 1110 0 01111110 111224579999999999999999
Q ss_pred EeeC
Q psy11826 67 VADN 70 (83)
Q Consensus 67 ~~~~ 70 (83)
.+..
T Consensus 90 ~~~~ 93 (116)
T cd07706 90 ALST 93 (116)
T ss_pred EEEC
Confidence 9974
No 173
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.45 E-value=5.6e-06 Score=38.57 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=45.5
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEec--CCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR 77 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~ 77 (83)
+..+.|.|.+.++.++ .+.|.+++..+............. ..+...+.|.+......+ ...|.|.+.........
T Consensus 18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~~ 97 (115)
T cd05769 18 KRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDTD 97 (115)
T ss_pred CCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccce
Confidence 4568899999886444 679999998776432111111111 123345677776655433 57899999876544443
No 174
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.40 E-value=1.3e-05 Score=36.24 Aligned_cols=66 Identities=9% Similarity=0.210 Sum_probs=39.0
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
+..+++.|.+.++.++ .+.|.++|..+..... ...... .+.+...+.|.+..-. ....|.|.+...
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~-~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKD-NDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecC-CCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 4567999999986554 4699999987653321 111111 1223334556655432 234599999873
No 175
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.34 E-value=2.3e-05 Score=35.37 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=39.5
Q ss_pred eEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 5 KITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 5 ~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
.....|.+ .|.|.+.|.|+++ +.............+.....+.|.+......+...|.|.+.+..-.
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 35677986 5789999999986 1111111111111122334567777555555567799999887643
No 176
>PHA03376 BARF1; Provisional
Probab=98.31 E-value=2e-05 Score=39.65 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCceEEEEeEeCc---cCCCeEEEEeCC----EEec-c------cceEEEEEEec-CCCeEEEEEEEccCCCCCCeEEEE
Q psy11826 2 LGRKITFFCMAEG---FPRPHITWTKDD----IELT-F------HKYFQVHEWFL-GNNTIKSKMEIDPATQKDAGYYEC 66 (83)
Q Consensus 2 ~g~~~~~~C~~~~---~~~~~~~w~~~~----~~~~-~------~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C 66 (83)
+|+.+.+.|.-.. .....|.|++.+ .-+. . ...+.....++ -+...+.+|.|.+++.+|.|.|.|
T Consensus 25 VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C 104 (221)
T PHA03376 25 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC 104 (221)
T ss_pred eCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEE
Confidence 5889999998542 244578999842 1111 0 11111111111 111245689999999999999999
Q ss_pred EeeCC
Q psy11826 67 VADNP 71 (83)
Q Consensus 67 ~~~~~ 71 (83)
.....
T Consensus 105 ~fQkg 109 (221)
T PHA03376 105 RMKLG 109 (221)
T ss_pred EEEcC
Confidence 99764
No 177
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.29 E-value=1.9e-05 Score=36.87 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=41.0
Q ss_pred CCceEEEEeEeCccC------CCeEEEEeCCEE----e-c--ccceE----EE-EEEec--CCCeEEEEEEEccCCCCCC
Q psy11826 2 LGRKITFFCMAEGFP------RPHITWTKDDIE----L-T--FHKYF----QV-HEWFL--GNNTIKSKMEIDPATQKDA 61 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~------~~~~~w~~~~~~----~-~--~~~~~----~~-~~~~~--~~~~~~~~l~i~~~~~~~~ 61 (83)
.|+.++|.|...... ...+.|++.... . . ..... .. .+... ........|.|.+++.+|+
T Consensus 13 ~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Ds 92 (119)
T cd05712 13 EGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDS 92 (119)
T ss_pred ccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhC
Confidence 589999999854221 245899974321 0 0 00000 00 01111 1123346799999999999
Q ss_pred eEEEEEeeCC
Q psy11826 62 GYYECVADNP 71 (83)
Q Consensus 62 g~y~C~~~~~ 71 (83)
|.|.|.+...
T Consensus 93 g~Y~C~~~~~ 102 (119)
T cd05712 93 GKYFFRVELG 102 (119)
T ss_pred eEEEEEEEcC
Confidence 9999988653
No 178
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.28 E-value=3.2e-05 Score=34.89 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=40.0
Q ss_pred eEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 5 KITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 5 ~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
.+.+.|.+. +.|.+.|.|+++. ............++.....+.|.+......+...+.|.+.+.....
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 457789865 7899999999862 1111111111111222345667775555555677999999876443
No 179
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.25 E-value=2.8e-05 Score=35.06 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=41.9
Q ss_pred CceEEEEeEeCccCCC--eEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
++.+.+.|.+.++.+. .+.|.++|.. .... ........+..+...+.|.+..........|.|.+....
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4568999999986553 5689999987 3221 111111112334455667766544334567999998754
No 180
>KOG4222|consensus
Probab=98.24 E-value=1.7e-06 Score=52.71 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=48.7
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
+|..++|.|...+.|+|.+.|.+.+........................|.+.++...|.|.|.|...+..+..
T Consensus 329 lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 329 LGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred cCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence 36678999999999999999999775432211000000000011112269999999999999999988776654
No 181
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.21 E-value=2e-05 Score=33.87 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.5
Q ss_pred EEEEEEEccCCCCCCeEEEEE
Q psy11826 47 IKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 47 ~~~~l~i~~~~~~~~g~y~C~ 67 (83)
....|.|.+++.+|+|.|.|.
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 60 NDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEcCCCHHHCEEEEEc
Confidence 346799999999999999995
No 182
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.17 E-value=2.5e-05 Score=35.50 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCceEEEEeEeCccC-C--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 2 LGRKITFFCMAEGFP-R--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.++.+.+.|.+.++. + ..+.|.+++.. .. .........+..+...+.|.+..-.......|.|.+.....
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 356789999998865 3 35899998865 11 10011111122344556677665445555779999987654
No 183
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.14 E-value=4.9e-05 Score=35.48 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=39.9
Q ss_pred CCceEEEEeEeCccC--CCeEEEEeC--CEEec------cc-ceE-E----EEEEec--CCCeEEEEEEEccCCCCCCeE
Q psy11826 2 LGRKITFFCMAEGFP--RPHITWTKD--DIELT------FH-KYF-Q----VHEWFL--GNNTIKSKMEIDPATQKDAGY 63 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~------~~-~~~-~----~~~~~~--~~~~~~~~l~i~~~~~~~~g~ 63 (83)
.|++++|.|...... ...+.|++. |.... .. ... . ...+.. ........|.|.+++.+|+|.
T Consensus 11 ~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~ 90 (117)
T cd04981 11 PGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAV 90 (117)
T ss_pred CCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEE
Confidence 589999999865432 456899972 22110 00 000 0 000000 011122369999999999999
Q ss_pred EEEEeeC
Q psy11826 64 YECVADN 70 (83)
Q Consensus 64 y~C~~~~ 70 (83)
|.|-...
T Consensus 91 YyCa~~~ 97 (117)
T cd04981 91 YYCARGL 97 (117)
T ss_pred EEEEEEc
Confidence 9998764
No 184
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.07 E-value=7.3e-06 Score=39.22 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=26.4
Q ss_pred EEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826 50 KMEIDPATQKDAGYYECVADNPFAIDRRGFRT 81 (83)
Q Consensus 50 ~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 81 (83)
+|.|.+++.+|+|.|.|.+.+..+.......|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l 33 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQL 33 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEE
Confidence 68899999999999999998877766555544
No 185
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.06 E-value=4.5e-05 Score=31.94 Aligned_cols=51 Identities=31% Similarity=0.465 Sum_probs=32.9
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
.|..++|.|+.... .+.|.+++..+..... .+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence 47889999985422 3899999865554321 12222223 7789999988643
No 186
>PHA02633 hypothetical protein; Provisional
Probab=97.90 E-value=6.4e-05 Score=31.11 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=26.5
Q ss_pred EEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 50 KMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 50 ~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
.|.|.++..+|+|.|.|...|..-.....+.+.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~ 51 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLC 51 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEE
Confidence 588889999999999999998776666555543
No 187
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.57 E-value=0.00092 Score=28.35 Aligned_cols=48 Identities=21% Similarity=0.454 Sum_probs=31.7
Q ss_pred ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826 4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
+.+.+.|.. .-.|.|++ |..+.... ..++.|........|.|.|.+.+
T Consensus 7 ~~V~L~C~~----~tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 7 GKVFLKCNG----ATNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ceEEEEecC----CCcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence 457888964 24599999 54433221 13566667676778999998765
No 188
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.57 E-value=0.0013 Score=29.88 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=42.9
Q ss_pred CceEEE-EeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc--ceeeE
Q psy11826 3 GRKITF-FCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA--IDRRG 78 (83)
Q Consensus 3 g~~~~~-~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g--~~~~~ 78 (83)
|+.+.+ .|.+ .+.|.+.|.|+.+...... .......++.....+.+.+......|...+.|.+....- .....
T Consensus 16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~ 92 (97)
T cd07704 16 GNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFRIT 92 (97)
T ss_pred CcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCceee
Confidence 445555 6774 5789999999975322111 111111122233455677765556667789999987643 33334
Q ss_pred EEE
Q psy11826 79 FRT 81 (83)
Q Consensus 79 ~~~ 81 (83)
+.|
T Consensus 93 ~~L 95 (97)
T cd07704 93 HIL 95 (97)
T ss_pred EEe
Confidence 444
No 189
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.41 E-value=0.00021 Score=34.04 Aligned_cols=80 Identities=9% Similarity=0.171 Sum_probs=42.6
Q ss_pred CceEEEEeEeCc-----cCCCeEEEEeCCEEecccc--eEEEEEEe------cCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826 3 GRKITFFCMAEG-----FPRPHITWTKDDIELTFHK--YFQVHEWF------LGNNTIKSKMEIDPATQKDAGYYECVAD 69 (83)
Q Consensus 3 g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 69 (83)
.+++.++|.+.. .+...+.|..++..+..-. ........ ..-..+.++|.+...+.- .|.|+|.+.
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt 105 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT 105 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence 577889998754 2344689999887654211 00000000 011123456777664433 799999998
Q ss_pred CCCcceeeEEEEeC
Q psy11826 70 NPFAIDRRGFRTDY 83 (83)
Q Consensus 70 ~~~g~~~~~~~~~~ 83 (83)
...........|+|
T Consensus 106 ~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 106 ELSREGETTIELKY 119 (130)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ecCCCceEEEEEEE
Confidence 87777766666653
No 190
>KOG4597|consensus
Probab=97.30 E-value=0.00064 Score=38.76 Aligned_cols=75 Identities=21% Similarity=0.196 Sum_probs=48.7
Q ss_pred CceEEEEeEeCccCCCeEEEEe---CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826 3 GRKITFFCMAEGFPRPHITWTK---DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 3 g~~~~~~C~~~~~~~~~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
++...+.|.++|++.+.|.|.+ +...+..... ..... .-......|.|.+....|+|.|.|.+.+..|.....+
T Consensus 211 wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~n-q~~e~--p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv 287 (560)
T KOG4597|consen 211 WETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPN-QTVEN--PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDV 287 (560)
T ss_pred chhhcccccccCCcCceeeeehhhccccceeecCc-cccCC--cceeeeeeEEEcchhhcCCCceeeccccccceeeccc
Confidence 4566788999999999999975 2222221110 00000 0011134688999999999999999999988766554
Q ss_pred E
Q psy11826 80 R 80 (83)
Q Consensus 80 ~ 80 (83)
.
T Consensus 288 ~ 288 (560)
T KOG4597|consen 288 P 288 (560)
T ss_pred e
Confidence 3
No 191
>PHA03042 CD47-like protein; Provisional
Probab=97.28 E-value=0.0054 Score=32.79 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=42.5
Q ss_pred CceEEEEeEeCcc-----CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826 3 GRKITFFCMAEGF-----PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 3 g~~~~~~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~ 77 (83)
.+++.++|..... ....+.|..++..+......+ .++|.+...+ .-.|+|+|.+.+......+
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----------~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----------TSSLKFNFSK-NLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----------ceEEEEeccc-cCCCceeEEEeecccCccE
Confidence 4678889986432 456799999887665432211 2456654432 3379999999876555455
Q ss_pred EEEEe
Q psy11826 78 GFRTD 82 (83)
Q Consensus 78 ~~~~~ 82 (83)
...++
T Consensus 99 ~IeLk 103 (286)
T PHA03042 99 TIELQ 103 (286)
T ss_pred EEEEE
Confidence 54443
No 192
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=96.95 E-value=0.0089 Score=27.08 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=42.8
Q ss_pred EEEEeE-eCccCCCeEEEEe--CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826 6 ITFFCM-AEGFPRPHITWTK--DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD 82 (83)
Q Consensus 6 ~~~~C~-~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~ 82 (83)
+.-.|. +.|.|++.|.|.. +|.. ..+.....++.....+.+.+-.....|.....|.+..........+.|+
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 344687 5689999999974 2321 1111111222233445666666677778889999987655555455443
No 193
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.85 E-value=0.0057 Score=32.57 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=36.1
Q ss_pred CCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 16 PRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 16 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
.-|...|.. +|..+......++.+ ...|.+.+-..+.+|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEEe
Confidence 457889987 455566666666544 3469999999999999999987543
No 194
>KOG3515|consensus
Probab=96.85 E-value=0.0011 Score=39.74 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=42.9
Q ss_pred CCCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 1 MLGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
+.|+.+.+.|.+.+.|+ +.+.|++.+....... ..+ ....|......+...+.|.|.+.|..+.
T Consensus 20 ~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 20 RLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRY-ATI---------ADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred ccCCcceeeeecCCCCCCcceEEEecCccccccc-ccc---------cCCceeeecchhhhhhhhhhhhcccccC
Confidence 36899999999887655 5699999776554111 111 1235666666666678899988887554
No 195
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.66 E-value=0.018 Score=26.36 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=35.7
Q ss_pred CCceEEEEeEeCc-cCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCC
Q psy11826 2 LGRKITFFCMAEG-FPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPF 72 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~ 72 (83)
+|+.+++.|.+.+ .|. ..+.|++....+.... +.............+.+.+.. +++|.| .|.|.+.-..
T Consensus 14 ~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 14 EGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred CCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 5899999999865 444 4688887554433221 000000000000012344433 366665 8999987443
No 196
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.59 E-value=0.023 Score=26.72 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=37.2
Q ss_pred CceEEEEeEeCccC--C-CeEEEEe--CCEEec-----c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826 3 GRKITFFCMAEGFP--R-PHITWTK--DDIELT-----F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63 (83)
Q Consensus 3 g~~~~~~C~~~~~~--~-~~~~w~~--~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 63 (83)
|..+++.|...+.. . -.+.|.+ .+ .+. . ..++.... +.......|.+..++.+|.+.
T Consensus 13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~---~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 13 NGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDG---TLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred CCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeE---eCCCCEEEEEEcCCCHHHCeE
Confidence 56799999986643 3 3578876 23 211 0 00111111 112224579999999999999
Q ss_pred EEEEe
Q psy11826 64 YECVA 68 (83)
Q Consensus 64 y~C~~ 68 (83)
|.|-.
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99944
No 197
>KOG1480|consensus
Probab=95.59 E-value=0.0024 Score=38.60 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=43.3
Q ss_pred ceEEEEeE-eCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 4 RKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 4 ~~~~~~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
..+++.|. ..+.|...++|++++..+......... ....+.+..+...|.+.|+|.+.|..+.
T Consensus 145 s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~--------~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 145 TTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA--------SDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred ccccccccCcccchhhhhhccccCCCCCccccchhh--------hcCCccccchhhhhcccceeeeehhhcc
Confidence 34455565 456777788999998877663321111 1235778888999999999999987654
No 198
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.99 E-value=0.31 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.505 Sum_probs=16.6
Q ss_pred eEEEEeEeCccCCC--eEEEEeC
Q psy11826 5 KITFFCMAEGFPRP--HITWTKD 25 (83)
Q Consensus 5 ~~~~~C~~~~~~~~--~~~w~~~ 25 (83)
.+++.|.+.|+.+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 46899999997654 4689998
No 199
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.89 E-value=0.1 Score=24.27 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=24.7
Q ss_pred EEEEccCCCCCCeEEEEEeeCCCcce-eeEEEE
Q psy11826 50 KMEIDPATQKDAGYYECVADNPFAID-RRGFRT 81 (83)
Q Consensus 50 ~l~i~~~~~~~~g~y~C~~~~~~g~~-~~~~~~ 81 (83)
+|.|..++.+|+|.|...+.+..|.. .+.|.+
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 69999999999999999999988865 445554
No 200
>KOG3515|consensus
Probab=94.75 E-value=0.27 Score=30.43 Aligned_cols=69 Identities=25% Similarity=0.377 Sum_probs=41.0
Q ss_pred CceEEEEeEe--CccCCCeEEEEeCCEEecccce--EEEEEEecCCC-eEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 3 GRKITFFCMA--EGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNN-TIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 3 g~~~~~~C~~--~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
+..+.+.|.. .+.|.+.+.|..+......... .........+. .-.+.+.+......+.|.|+|.+.+.
T Consensus 112 ~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 112 KGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred CCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 4567777853 4577888999988765443211 11100001111 11345666667788899999999984
No 201
>PHA02982 hypothetical protein; Provisional
Probab=94.73 E-value=0.29 Score=25.72 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=22.6
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPFA 73 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~g 73 (83)
.|+|++..+..+..|.|.|.+....+
T Consensus 99 ~STLTIkk~~i~N~GCYtc~~ks~~~ 124 (251)
T PHA02982 99 SSTFTMKKPDPQNLGCFTCEAKDAEG 124 (251)
T ss_pred ceeEEeccCCcccCCceEEEEecCCC
Confidence 46899999999999999999987554
No 202
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.45 E-value=0.2 Score=22.52 Aligned_cols=59 Identities=17% Similarity=0.367 Sum_probs=35.5
Q ss_pred CCceEEEEeEeCc-----cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826 2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67 (83)
Q Consensus 2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 67 (83)
+|++++..|.... .....+.|..++..++.+....+. . ..+...+........-.|-|.
T Consensus 17 lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in-----~--~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 17 LGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN-----D--TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp TTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES-----T--TEEEEEESS--SSEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC-----C--eEEEEEEccCCCCCceEEEEE
Confidence 6899999998642 245678999988877776543321 1 135677777665555556565
No 203
>PHA03052 Hypothetical protein; Provisional
Probab=93.55 E-value=0.27 Score=20.94 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCceEEEEeEeCc-c--CCCeEEEEeCCEEe
Q psy11826 2 LGRKITFFCMAEG-F--PRPHITWTKDDIEL 29 (83)
Q Consensus 2 ~g~~~~~~C~~~~-~--~~~~~~w~~~~~~~ 29 (83)
.|+++++.|.+.- . ..+.+.|..|+..+
T Consensus 11 lGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 11 LGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 5889999999753 2 24568899998777
No 204
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.51 E-value=1.3 Score=25.82 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=43.1
Q ss_pred CCceEEEEeEeCc--c-CCCeEEEEeCCEEec-----------------ccceEEEEEEecCCC-eEEEEEEEccCCCCC
Q psy11826 2 LGRKITFFCMAEG--F-PRPHITWTKDDIELT-----------------FHKYFQVHEWFLGNN-TIKSKMEIDPATQKD 60 (83)
Q Consensus 2 ~g~~~~~~C~~~~--~-~~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~ 60 (83)
+|+++.+.|...- . ....+.|+..+-++. ....+.+.....-+. --.++|+|..+.-+.
T Consensus 278 ~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N 357 (500)
T PHA02914 278 VGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINN 357 (500)
T ss_pred cCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEc
Confidence 4888999998643 2 233578876543322 112233333211111 134689999999999
Q ss_pred CeEEEEEeeCC
Q psy11826 61 AGYYECVADNP 71 (83)
Q Consensus 61 ~g~y~C~~~~~ 71 (83)
.|.|.|.+...
T Consensus 358 ~GCY~~~a~~g 368 (500)
T PHA02914 358 AGCYEAQAFMG 368 (500)
T ss_pred CCceEEEEecC
Confidence 99999998754
No 205
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.25 E-value=0.52 Score=20.74 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=16.2
Q ss_pred EEEccCCCCCCeEEEEEe-eCCC
Q psy11826 51 MEIDPATQKDAGYYECVA-DNPF 72 (83)
Q Consensus 51 l~i~~~~~~~~g~y~C~~-~~~~ 72 (83)
........+|+|.+.|.+ .+..
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTT
T ss_pred EEEecCCCCCCEEEEEEEcCCce
Confidence 444566778999999999 4443
No 206
>PHA03271 envelope glycoprotein C; Provisional
Probab=91.86 E-value=1.6 Score=25.54 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCCceEEEEeEeCccCCC---eEEEEeCCEEecccceEEEEE---EecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826 1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYFQVHE---WFLGNNTIKSKMEIDPATQKDAGYYECVAD 69 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 69 (83)
+.|+...-.|.+..+.+| .+.|+.+|............. ...+.....+++.+........-..+|.+.
T Consensus 258 L~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~ 332 (490)
T PHA03271 258 LSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVA 332 (490)
T ss_pred ccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEE
Confidence 357888888998765433 578999987765433211111 011122334556655443334557888773
No 207
>PHA03269 envelope glycoprotein C; Provisional
Probab=91.66 E-value=1.8 Score=25.83 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=39.5
Q ss_pred CCCceEEEEeEeCccCCC---eEEEEeCCEEecccceEEEEE-EecCCCeEEEEEEEccCCCCC--CeEEEEEee
Q psy11826 1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPATQKD--AGYYECVAD 69 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~--~g~y~C~~~ 69 (83)
+.|+...-.|.+..+.+| .+.|+.++..+.......... ..++.....|++.+......+ .-..+|.+.
T Consensus 340 L~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~ 414 (566)
T PHA03269 340 LLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL 414 (566)
T ss_pred ccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence 457888889998765433 578999987776422111111 122234445667664433233 466788773
No 208
>PHA03270 envelope glycoprotein C; Provisional
Probab=89.65 E-value=2.8 Score=24.66 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=40.0
Q ss_pred CCCceEEEEeEeCccCCC---eEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEee
Q psy11826 1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVAD 69 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~ 69 (83)
+.|+...-.|.+..+.+| .+.|+.++..+...... .......+.....+++.+....... .-..+|.+.
T Consensus 232 L~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~ 305 (466)
T PHA03270 232 LEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFT 305 (466)
T ss_pred ccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence 457888888998765433 57899999877532211 1111222334456667665544322 346888773
No 209
>PHA03273 envelope glycoprotein C; Provisional
Probab=88.53 E-value=3.6 Score=24.44 Aligned_cols=69 Identities=20% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCceEEEEeEeCccCCC---eEEEEeCCEEecccce-EEEEE-EecCCCeEEEEEEEccCCC-CCCeEEEEEee
Q psy11826 1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKY-FQVHE-WFLGNNTIKSKMEIDPATQ-KDAGYYECVAD 69 (83)
Q Consensus 1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~ 69 (83)
+.|+...-.|.+..+.+| .+.|+.++..+..... ..... ...+.....++|.+..... ...-..+|.+.
T Consensus 248 L~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 248 LKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 457888888998765433 5789999988773221 11111 1122234456677766543 33567888773
No 210
>PHA03112 IL-18 binding protein; Provisional
Probab=83.70 E-value=3.9 Score=20.23 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=39.1
Q ss_pred CCceEEEEeEeCcc-CC-CeEEEEeCC-EEec---ccce--EEEE--EEe-cCCCeEEEEEEEccCCCC-CCeEEEEEee
Q psy11826 2 LGRKITFFCMAEGF-PR-PHITWTKDD-IELT---FHKY--FQVH--EWF-LGNNTIKSKMEIDPATQK-DAGYYECVAD 69 (83)
Q Consensus 2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~-~~~~---~~~~--~~~~--~~~-~~~~~~~~~l~i~~~~~~-~~g~y~C~~~ 69 (83)
.++++.+.|.+.+. |. ..+.|...+ .... ..++ .++. ... .-.......+.+.+++.. +...++|...
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL~ 116 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVLM 116 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEEe
Confidence 46788999997654 54 457898654 2211 1000 0010 000 011233456777777744 3458889887
Q ss_pred CCCcce
Q psy11826 70 NPFAID 75 (83)
Q Consensus 70 ~~~g~~ 75 (83)
...+..
T Consensus 117 D~~~~~ 122 (141)
T PHA03112 117 DLDGPI 122 (141)
T ss_pred cCCchh
Confidence 655543
No 211
>COG5475 Uncharacterized small protein [Function unknown]
Probab=83.56 E-value=1.6 Score=17.85 Aligned_cols=19 Identities=32% Similarity=0.725 Sum_probs=14.7
Q ss_pred CeEEEEEeeCCCcceeeEE
Q psy11826 61 AGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 61 ~g~y~C~~~~~~g~~~~~~ 79 (83)
.|.|.|...+..|.....|
T Consensus 28 ~Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 28 DGMYECRWFDGYGVKREAF 46 (60)
T ss_pred CCeEEEEEecCCCcccccc
Confidence 4999999999888665444
No 212
>PHA03240 envelope glycoprotein M; Provisional
Probab=79.87 E-value=3 Score=22.18 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=17.0
Q ss_pred eEEEEEEEccCCCCCCeEEE
Q psy11826 46 TIKSKMEIDPATQKDAGYYE 65 (83)
Q Consensus 46 ~~~~~l~i~~~~~~~~g~y~ 65 (83)
..+++|.|.++..+|.|.|-
T Consensus 102 C~NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 102 CHNSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred eccceEEEEEEeecCcchhh
Confidence 45678999999999999985
No 213
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=77.98 E-value=9.9 Score=22.48 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=22.6
Q ss_pred EEEEEccCCCCCCeEEEEEeeC-CCcceeeEEE
Q psy11826 49 SKMEIDPATQKDAGYYECVADN-PFAIDRRGFR 80 (83)
Q Consensus 49 ~~l~i~~~~~~~~g~y~C~~~~-~~g~~~~~~~ 80 (83)
-.+.+.+++..|.|.|.|...- ....-++.+.
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~ 113 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYLGDNESHKHEIL 113 (500)
T ss_pred eEEEecCcccccCCcEEEEEEeCCceeEEEEEE
Confidence 3577888999999999998863 3333444443
No 214
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=75.15 E-value=9.2 Score=19.45 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=21.0
Q ss_pred EEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 49 SKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 49 ~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
..|.|.+.+.+|+|.|.-.++-....
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCC
Confidence 45899999999999999988754433
No 215
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=73.35 E-value=11 Score=19.61 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=36.4
Q ss_pred eEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCC--eEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 10 CMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNN--TIKSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 10 C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
|... -..+|.+.|......+.+..-.+++.....+. ...+...+.+.+..+...|.|...-.
T Consensus 114 CitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 114 CITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred EeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 5432 34578899987665555433223322212222 23455677888888889999987643
No 216
>PHA03283 envelope glycoprotein E; Provisional
Probab=65.11 E-value=29 Score=21.39 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.4
Q ss_pred EEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826 49 SKMEIDPATQKDAGYYECVADNPFAIDRRGF 79 (83)
Q Consensus 49 ~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~ 79 (83)
+.|.|.+++.+++|.|.-...+..+.....+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vf 164 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVF 164 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEE
Confidence 4699999999999999999988665333333
No 217
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=63.64 E-value=11 Score=15.90 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=11.1
Q ss_pred CCceEEEEeEeCccCCCeEEEEe
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTK 24 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~ 24 (83)
+|++++| .|-+...+.|++
T Consensus 4 ~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 4 VGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EcCcEEE----eCCCCCceEEEE
Confidence 3555555 344445688983
No 218
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=63.34 E-value=12 Score=16.07 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=13.6
Q ss_pred EEeEeCccCCCeEEEEeCCEEecc
Q psy11826 8 FFCMAEGFPRPHITWTKDDIELTF 31 (83)
Q Consensus 8 ~~C~~~~~~~~~~~w~~~~~~~~~ 31 (83)
+.|. ...+..+.|+-||..+..
T Consensus 3 ltC~--s~~sLPiswYcN~TRLlR 24 (71)
T PF11049_consen 3 LTCP--SNASLPISWYCNGTRLLR 24 (71)
T ss_pred eecC--CCCCCcccEEECCceeee
Confidence 4455 233445789999876653
No 219
>PHA03291 envelope glycoprotein I; Provisional
Probab=62.13 E-value=29 Score=20.29 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=23.9
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~ 80 (83)
...|.+.+....|+|.|...++-........|.
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~ 160 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFP 160 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEE
Confidence 446888999999999999998755444333333
No 220
>PHA03290 envelope glycoprotein I; Provisional
Probab=54.23 E-value=42 Score=19.50 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.0
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCC
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
...|.|.+...+|+|.|.-.++-.
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeC
Confidence 346899999999999999888743
No 221
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=53.23 E-value=21 Score=15.74 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=31.1
Q ss_pred EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR 77 (83)
Q Consensus 6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~ 77 (83)
..+.+.+.+. .+.+.|+.+|..+....... .+.+ .....|.|...+....|....
T Consensus 32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~-------------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH-------------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred ceEEEEEeCC-CCcEEEEECCEEcccCCCCC-------------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 3444454455 44899999998883322111 1221 223567888777777666543
No 222
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=50.42 E-value=20 Score=14.61 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=11.1
Q ss_pred CCeEEEEEeeCCCcc
Q psy11826 60 DAGYYECVADNPFAI 74 (83)
Q Consensus 60 ~~g~y~C~~~~~~g~ 74 (83)
.+.++.|.++|..|.
T Consensus 9 ssnsflctvqnkng~ 23 (65)
T PF13220_consen 9 SSNSFLCTVQNKNGD 23 (65)
T ss_pred CCCceEEEEecccHh
Confidence 356788999887664
No 223
>PHA03282 envelope glycoprotein E; Provisional
Probab=49.28 E-value=56 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEEccCCCCCCeEEEEEee
Q psy11826 48 KSKMEIDPATQKDAGYYECVAD 69 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~ 69 (83)
+.+|.|.++..+|+|.|...+.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred cceEEEeeccccCCceEEEEec
Confidence 4579999999999999998864
No 224
>PHA03289 envelope glycoprotein I; Provisional
Probab=48.07 E-value=54 Score=18.99 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.5
Q ss_pred EEEEEccCCCCCCeEEEEEeeCC
Q psy11826 49 SKMEIDPATQKDAGYYECVADNP 71 (83)
Q Consensus 49 ~~l~i~~~~~~~~g~y~C~~~~~ 71 (83)
..|.|.+.+.+|+|.|.-.++-.
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeC
Confidence 46889999999999999888744
No 225
>KOG0613|consensus
Probab=42.94 E-value=27 Score=23.87 Aligned_cols=70 Identities=9% Similarity=-0.060 Sum_probs=44.7
Q ss_pred ceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826 4 RKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR 76 (83)
Q Consensus 4 ~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~ 76 (83)
..+.+.|...+...|. +.|++++........... ..........+.+..+...+.+.+.|-++|..|...
T Consensus 350 ~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 350 TLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALP---CPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred cceeecccccCCcCCchheeecccccccccccccc---cccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 4467778877777776 888887655443321110 011222334677778888888999999999877643
No 226
>PHA03286 envelope glycoprotein E; Provisional
Probab=42.18 E-value=81 Score=19.33 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.5
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPFAID 75 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~g~~ 75 (83)
.+.|.|.+++.+.+|.|.-...|..+..
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~ 153 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTA 153 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcE
Confidence 3569999999999999999998876553
No 227
>PHA03292 envelope glycoprotein I; Provisional
Probab=38.44 E-value=88 Score=18.69 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826 48 KSKMEIDPATQKDAGYYECVADNPF 72 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~~~ 72 (83)
...|.|.+.+.+|+|.|.-.++-..
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCC
Confidence 3468899999999999998887443
No 228
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=37.72 E-value=30 Score=16.62 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=13.1
Q ss_pred EEEEccCCCCCCeEEEEEe
Q psy11826 50 KMEIDPATQKDAGYYECVA 68 (83)
Q Consensus 50 ~l~i~~~~~~~~g~y~C~~ 68 (83)
+|.|..-+++|.|.|.-..
T Consensus 104 sL~Il~SrkE~EGWYfmtl 122 (126)
T PF06214_consen 104 SLEILESRKEDEGWYFMTL 122 (126)
T ss_dssp EEEETT--GGG-EEEEEEE
T ss_pred eeehhccccccCceEEEEe
Confidence 6888888999999998654
No 229
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.06 E-value=38 Score=20.35 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=15.4
Q ss_pred EEEEccCCCCCCeEEEEEeeC
Q psy11826 50 KMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 50 ~l~i~~~~~~~~g~y~C~~~~ 70 (83)
.|.+.++...++|.|.|.+..
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 488889999999999998864
No 230
>PHA03189 UL14 tegument protein; Provisional
Probab=33.92 E-value=99 Score=17.94 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=17.3
Q ss_pred EEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826 49 SKMEIDPATQKDAGYYECVADNPFAI 74 (83)
Q Consensus 49 ~~l~i~~~~~~~~g~y~C~~~~~~g~ 74 (83)
.+|.+ ++..+.+|.|.|...|..+.
T Consensus 134 ltLtF-~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 134 LTLTF-RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEEE-EEEecccceEEEEeccccce
Confidence 34554 34456789999999886553
No 231
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=32.91 E-value=87 Score=16.96 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=27.3
Q ss_pred eEEEEeCCEEecccceEEEEE-EecCCCeEEEEEEEccCC-CCCCeEEEEEee
Q psy11826 19 HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPAT-QKDAGYYECVAD 69 (83)
Q Consensus 19 ~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~ 69 (83)
.+.|+.+|..+.......... ...+.....++|.+.... ....-..+|.+.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~ 60 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVT 60 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEE
Confidence 578999998776432211111 112223445667773333 333567888763
No 232
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=29.71 E-value=59 Score=14.63 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=7.9
Q ss_pred CCeEEEEEeeCC
Q psy11826 60 DAGYYECVADNP 71 (83)
Q Consensus 60 ~~g~y~C~~~~~ 71 (83)
+.|++.|-.+..
T Consensus 26 hRGF~vcamnmt 37 (86)
T COG3978 26 HRGFRVCAMNMT 37 (86)
T ss_pred hcCeEEEEeecc
Confidence 567788866544
No 233
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.40 E-value=32 Score=12.63 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=6.4
Q ss_pred CCCeEEEEE
Q psy11826 59 KDAGYYECV 67 (83)
Q Consensus 59 ~~~g~y~C~ 67 (83)
.+.|.|.|.
T Consensus 21 ~~dG~~yC~ 29 (36)
T PF11781_consen 21 SDDGFYYCD 29 (36)
T ss_pred ccCCEEEhh
Confidence 456888883
No 234
>KOG1026|consensus
Probab=29.32 E-value=66 Score=21.12 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=22.0
Q ss_pred CCceEEEEeEeCccCCCeEEEEeCCEE
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKDDIE 28 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~ 28 (83)
.|..+++.|...+.|.|.+.|+..+..
T Consensus 206 ~~~~~~~~c~~~~~~vp~~~~~~~~~~ 232 (774)
T KOG1026|consen 206 EGSSITLKCSQAGIPVPCHYWFPNCLA 232 (774)
T ss_pred ccchheeeeecccCCCcceeeeccccc
Confidence 367788999999999999999876543
No 235
>PHA03298 envelope glycoprotein L; Provisional
Probab=27.96 E-value=67 Score=15.92 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=10.4
Q ss_pred CCCeEEEEeCCEEec
Q psy11826 16 PRPHITWTKDDIELT 30 (83)
Q Consensus 16 ~~~~~~w~~~~~~~~ 30 (83)
++..+.|+++|....
T Consensus 94 ~pEvI~wyksGtA~~ 108 (167)
T PHA03298 94 NPEAIFWYKNGTAAK 108 (167)
T ss_pred CceeEEEecCCceEE
Confidence 344678999987543
No 236
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=27.82 E-value=16 Score=15.52 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=2.3
Q ss_pred EEEccCCCCCCeEEEEE
Q psy11826 51 MEIDPATQKDAGYYECV 67 (83)
Q Consensus 51 l~i~~~~~~~~g~y~C~ 67 (83)
+.+.+.+..|.|+|.-.
T Consensus 31 f~iyR~rkkdEGSY~l~ 47 (64)
T PF01034_consen 31 FLIYRMRKKDEGSYDLD 47 (64)
T ss_dssp ------S------SS--
T ss_pred HHHHHHHhcCCCCccCC
Confidence 55667788888888653
No 237
>PF11088 RL11D: Glycoprotein encoding membrane proteins RL5A and RL6; InterPro: IPR024349 This entry represents RL5A and RL6 from human herpesvirus 5. RL5A and RL6 are members of the RL11 family, which are predicted to encode membrane glycoproteins [].
Probab=25.68 E-value=41 Score=15.60 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=19.1
Q ss_pred eEEEEEEEccCCCCCCeEEEEEee
Q psy11826 46 TIKSKMEIDPATQKDAGYYECVAD 69 (83)
Q Consensus 46 ~~~~~l~i~~~~~~~~g~y~C~~~ 69 (83)
..+.+|.|-+++..+.|.|-...+
T Consensus 57 CsHtsL~lCN~T~g~eg~ydl~r~ 80 (98)
T PF11088_consen 57 CSHTSLTLCNMTQGNEGVYDLGRR 80 (98)
T ss_pred ccCCcEEEEeeeccCcccEeeeee
Confidence 445679999999999999986554
No 238
>PF15096 G6B: G6B family
Probab=23.73 E-value=1.1e+02 Score=16.33 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=11.8
Q ss_pred CCCCCCeEEEEEeeCC
Q psy11826 56 ATQKDAGYYECVADNP 71 (83)
Q Consensus 56 ~~~~~~g~y~C~~~~~ 71 (83)
+...|+|.|.|.-...
T Consensus 81 Ls~GDSGTFfCkGr~e 96 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQE 96 (224)
T ss_pred hhcCCccceEecCccc
Confidence 3578999999985543
No 239
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=23.21 E-value=1.3e+02 Score=15.81 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=17.7
Q ss_pred EEEEEEccCCCCCCeEEEEEeeC
Q psy11826 48 KSKMEIDPATQKDAGYYECVADN 70 (83)
Q Consensus 48 ~~~l~i~~~~~~~~g~y~C~~~~ 70 (83)
...+.+..+...-+|.|.|....
T Consensus 92 ~i~mt~hQVN~DGaGP~~C~iD~ 114 (184)
T PF11327_consen 92 SISMTIHQVNADGAGPFTCDIDE 114 (184)
T ss_pred EEEEEEEEecCCCCcCeEEEECC
Confidence 34677888887779999998754
No 240
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=22.01 E-value=73 Score=16.37 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=16.2
Q ss_pred CCceEEEEeEeCccCCCeEEEEe
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTK 24 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~ 24 (83)
-|..+.+.|...|...|.+.-.|
T Consensus 72 YGs~V~Lv~~~TGv~sppliIRK 94 (158)
T PF09270_consen 72 YGSTVVLVCSVTGVSSPPLIIRK 94 (158)
T ss_dssp TTSEEEEEETTT-EBEEEEEEEE
T ss_pred cCCEEEEEECCCCcccCceEEEE
Confidence 37889999998887777655444
No 241
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=20.49 E-value=70 Score=11.79 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=7.3
Q ss_pred CeEEEEEeeC
Q psy11826 61 AGYYECVADN 70 (83)
Q Consensus 61 ~g~y~C~~~~ 70 (83)
.|.|.|....
T Consensus 22 ~Gsy~C~C~~ 31 (42)
T PF07645_consen 22 EGSYSCSCPP 31 (42)
T ss_dssp TTEEEEEEST
T ss_pred CCCEEeeCCC
Confidence 4889998654
No 242
>KOG3743|consensus
Probab=20.05 E-value=1.5e+02 Score=18.81 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=17.6
Q ss_pred CCceEEEEeEeCccCCCeEEEEeC
Q psy11826 2 LGRKITFFCMAEGFPRPHITWTKD 25 (83)
Q Consensus 2 ~g~~~~~~C~~~~~~~~~~~w~~~ 25 (83)
-|..+.+.|.+.|...|.+...|.
T Consensus 382 ygsvV~LV~~vTG~~lppLIIRKv 405 (622)
T KOG3743|consen 382 YGSVVKLVCSVTGITLPPLIIRKV 405 (622)
T ss_pred eccEEEEEeecccccCCcceeeec
Confidence 377889999999987766554443
Done!