RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11826
(83 letters)
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.9 bits (174), Expect = 4e-18
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+G P+P + W + L KY + +++D T + G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 63 YYECVADNPFAIDRR 77
Y +A N + D +
Sbjct: 76 DYTLIAKNEYGKDEK 90
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 72.8 bits (179), Expect = 6e-18
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ G P P ITW K + + ++QV + S + + +KDAG
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGVERKDAG 174
Query: 63 YYECVADNPF 72
+Y A N F
Sbjct: 175 FYVVCAKNRF 184
Score = 60.9 bits (148), Expect = 2e-13
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
T C G P+P + W + E+ + F G ++ I T DA
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY---HQLIIASVTDDDAT 75
Query: 63 YYECVADNPF 72
Y+ A N
Sbjct: 76 VYQVRATNQG 85
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 72.5 bits (178), Expect = 7e-18
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G K C G P+P ++W K D L + V E + + + I ++D
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE----SGS----LRIHNVQKED 164
Query: 61 AGYYECVADNPF 72
AG Y CVA N
Sbjct: 165 AGQYRCVAKNSL 176
Score = 64.4 bits (157), Expect = 1e-14
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ TF C E +P+P I+WT++ I + F + + E + I D
Sbjct: 21 VEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE---NGQLLT----ILSVEDSD 73
Query: 61 AGYYECVADNP 71
G Y C A+N
Sbjct: 74 DGIYCCTANNG 84
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 73.4 bits (180), Expect = 1e-17
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
LG+ +T C A+GFP P ++WTKD + + F ++ S++ I + D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKNDE 266
Query: 62 GYYECVADNPF 72
Y C+A+N
Sbjct: 267 AEYVCIAENKA 277
Score = 64.5 bits (157), Expect = 3e-14
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G C P I W ++ K + L NN ++ I + D G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI--VLSNNYLQ----IRGIKKTDEG 168
Query: 63 YYECVADNP 71
Y C
Sbjct: 169 TYRCEGRIL 177
Score = 56.8 bits (137), Expect = 1e-11
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 1 MLGRKITFFCMAEGFPR-PHITWTKDD---IELTFHKYFQVHEWFLGNNTIKSKMEIDPA 56
+G F C G + I+W + + + V N+ S + I A
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-----NDDDSSTLTIYNA 69
Query: 57 TQKDAGYYECVADNPF 72
DAG Y+CV
Sbjct: 70 NIDDAGIYKCVVTAED 85
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 73.8 bits (181), Expect = 2e-17
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C+A G P P I+W D ++ + +QV ++ N + S + I D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 63 YYECVADNPF 72
Y+C+A +
Sbjct: 504 LYKCIAKSKV 513
Score = 66.5 bits (162), Expect = 9e-15
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ C A+G+P P W K T + +++ + + I A +D+G
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVEDSG 319
Query: 63 YYECVADNPF 72
Y CV +N
Sbjct: 320 KYLCVVNNSV 329
Score = 63.8 bits (155), Expect = 7e-14
Identities = 16/70 (22%), Positives = 19/70 (27%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
C A G P P I W + D G D + A
Sbjct: 54 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 63 YYECVADNPF 72
Y C+A N F
Sbjct: 114 VYACLARNQF 123
Score = 62.6 bits (152), Expect = 2e-13
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G C A+GFP+P +TW K + + + +D + +
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE--GTLHVDNIQKTNE 785
Query: 62 GYYECVADNP 71
GYY C A N
Sbjct: 786 GYYLCEAING 795
Score = 62.3 bits (151), Expect = 3e-13
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 1 MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+G+ +T C G P +I WT D ++ S + I+
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG----SVLTIEAVEAS 687
Query: 60 DAGYYECVADNPFA 73
AG + C A N
Sbjct: 688 HAGNFTCHARNLAG 701
Score = 61.1 bits (148), Expect = 6e-13
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK- 59
+ G + C G+P I W +D+ L ++ +V N T+ I+ +
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFP----NGTL----IIENVERNS 590
Query: 60 DAGYYECVADNP 71
D Y CVA N
Sbjct: 591 DQATYTCVAKNQ 602
Score = 59.6 bits (144), Expect = 2e-12
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
GR F C G P ++W KD + + ++ I+ ++D G
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGH-----------SESVLR----IESVKKEDKG 402
Query: 63 YYECVADNP 71
Y+C N
Sbjct: 403 MYQCFVRND 411
Score = 45.3 bits (107), Expect = 2e-07
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 3 GRKITFFCMAE---GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G C+ ++W D+ E F ++ + + ++ I +
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 209
Query: 60 DA-GYYECVADNPFAIDRR 77
D Y+C + + R
Sbjct: 210 DGYKSYQCRTKHRLTGETR 228
Score = 31.1 bits (70), Expect = 0.026
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 51 MEIDPATQKDAGYYECVADNP 71
M + K + VA
Sbjct: 1 MNMPNERLKWLMLFAAVALIA 21
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 72.9 bits (179), Expect = 2e-17
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++TF C A G P P I+W ++ + ++ + G+N +++ + D G
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI----LKGSN---TELTVRNIINSDGG 261
Query: 63 YYECVADNPFAIDRRGFR 80
Y C A N D +
Sbjct: 262 PYVCRATNKAGEDEKQAF 279
Score = 65.2 bits (159), Expect = 1e-14
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G C P P ++W + E+T + L NN ++ I + D
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA--MLANNNLQ----ILNINKSDE 165
Query: 62 GYYECVADNP 71
G Y C
Sbjct: 166 GIYRCEGRVE 175
Score = 57.1 bits (138), Expect = 1e-11
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C A G P + ++ + V + ++S++ I A +DAG
Sbjct: 19 GESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAG 73
Query: 63 YYECVADNPF 72
Y C A +
Sbjct: 74 IYRCQATDAK 83
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 68.6 bits (168), Expect = 3e-17
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C A G P P I+W K+ + E T+ +I D
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE----QGTL----QIKNLRISDT 74
Query: 62 GYYECVADNPF 72
G Y CVA +
Sbjct: 75 GTYTCVATSSS 85
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 70.2 bits (172), Expect = 4e-17
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ + C EG P I W KD + + + + + + DAG
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIP---VSEQHWIGFLSLKSVERSDAG 73
Query: 63 YYECVADNPF 72
Y C ++
Sbjct: 74 RYWCQVEDGG 83
Score = 47.1 bits (112), Expect = 3e-08
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 15/73 (20%)
Query: 1 MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
C A G P P I W + ++ S ++
Sbjct: 111 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKI--------------GGPAPSPSVLNVTGVT 156
Query: 60 DAGYYECVADNPF 72
+ + C A N
Sbjct: 157 QSTMFSCEAHNLK 169
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 70.2 bits (172), Expect = 5e-17
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++TF C A G P P I+W ++ + ++ + G+N +++ + D G
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI----LKGSN---TELTVRNIINSDGG 165
Query: 63 YYECVADNPFAIDRRGFR 80
Y C A N D +
Sbjct: 166 PYVCRATNKAGEDEKQAF 183
Score = 64.4 bits (157), Expect = 1e-14
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G C P P ++W + E+T + L NN ++ I + D
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA--MLANNNLQ----ILNINKSDE 69
Query: 62 GYYECVADNP 71
G Y C
Sbjct: 70 GIYRCEGRVE 79
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 71.3 bits (175), Expect = 7e-17
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C +G P ++W KD EL K +++ + + I D G
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVDSADIG 261
Query: 63 YYECVADNPFAIDRRGFR 80
Y+C A N
Sbjct: 262 EYQCKASNDVGSYTCVGS 279
Score = 69.0 bits (169), Expect = 6e-16
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ C G P + W KD+ E+ F++ F+ + + +E+ + +D+G
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESV---AVLEMYNLSVEDSG 168
Query: 63 YYECVADNPF 72
Y C A N
Sbjct: 169 DYTCEAHNAA 178
Score = 67.1 bits (164), Expect = 3e-15
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G TF C G ITW KD+ E+ +++ + N + + T+ DAG
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT--LVENTAT---LTVLKVTKGDAG 74
Query: 63 YYECVADNPF 72
Y C A N
Sbjct: 75 QYTCYASNVA 84
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 67.8 bits (166), Expect = 7e-17
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C +G P P +TW + L+ QV KS EI D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEG 83
Query: 63 YYECVADNP 71
Y V +N
Sbjct: 84 NYSVVVENS 92
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 67.7 bits (166), Expect = 7e-17
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G+ +T C G P P +TW+ ++ + + H + + + I ++D
Sbjct: 18 DEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL---TTLIIMDVQKQD 74
Query: 61 AGYYECVADNPF 72
G Y N F
Sbjct: 75 GGLYTLSLGNEF 86
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 67.8 bits (166), Expect = 7e-17
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +TF C G P+P I W KD +++ ++ + G + + +T D
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS----LHTTASTLDDD 78
Query: 62 GYYECVADNP 71
G Y +A NP
Sbjct: 79 GNYTIMAANP 88
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 67.7 bits (166), Expect = 8e-17
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ C G P P ITW + + + + G + I A +D G
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE----AGVAE----LHIQDALPEDHG 77
Query: 63 YYECVADNPF 72
Y C+A+N
Sbjct: 78 TYTCLAENAL 87
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 71.9 bits (176), Expect = 1e-16
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
M+ I+ C A+GFP P W K T + +++ + + I A +D
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS---GTLIIKDAVVED 281
Query: 61 AGYYECVADNPF 72
+G Y CV +N
Sbjct: 282 SGKYLCVVNNSV 293
Score = 61.1 bits (148), Expect = 7e-13
Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIEL--TFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
C A G P P I W + D Q+ G D +
Sbjct: 19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS--DGKLVFPPFRAEDYRQEVH 76
Query: 61 AGYYECVADNPF 72
A Y C+A N F
Sbjct: 77 AQVYACLARNQF 88
Score = 58.0 bits (140), Expect = 7e-12
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
GR F C G P ++W KD + + ++ I+ ++D
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIG-----------HSESVLR----IESVKKEDK 365
Query: 62 GYYECVADNPF 72
G Y+C N
Sbjct: 366 GMYQCFVRNDR 376
Score = 46.9 bits (111), Expect = 7e-08
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 3 GRKITFFCMAEGF---PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G C+ F ++W D+ E F ++ + + ++ I +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 174
Query: 60 DA-GYYECVADNPFAIDRR 77
D Y+C + + R
Sbjct: 175 DGYKSYQCRTKHRLTGETR 193
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 71.9 bits (176), Expect = 1e-16
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G +CM P + + K+ ++ + ++ + + +D
Sbjct: 225 KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR---LLFKTTLPED 281
Query: 61 AGYYECVADNP 71
G Y C DN
Sbjct: 282 EGVYTCEVDNG 292
Score = 64.9 bits (158), Expect = 2e-14
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ +T C G P P++ W+ + L+ + V ++ + I D G
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA-TVT-----DSGLV----IKGVKNGDKG 373
Query: 63 YYECVADNP 71
YY C A N
Sbjct: 374 YYGCRATNE 382
Score = 59.2 bits (143), Expect = 3e-12
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 3 GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C+ EG + +W KD + ++ ++ D
Sbjct: 21 NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGSLV----FLRPQASDE 74
Query: 62 GYYECVADNPF 72
G+Y+C A+ P
Sbjct: 75 GHYQCFAETPA 85
Score = 46.4 bits (110), Expect = 9e-08
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 3 GRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHE---WFLGNNTIKSKMEIDPATQ 58
GR C+ +P+P ITW K + + + + +
Sbjct: 115 GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFT-IVTKEDV 173
Query: 59 KDAGYYECVADNPF 72
D Y C A N
Sbjct: 174 SDIYKYVCTAKNAA 187
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 69.8 bits (171), Expect = 1e-16
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C A G P P+I W K+ ++ L + ++ I+ + ++D G
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS----LKDGFLQ----IENSREEDQG 176
Query: 63 YYECVADNPF 72
YECVA+N
Sbjct: 177 KYECVAENSM 186
Score = 61.7 bits (150), Expect = 2e-13
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKD 60
+G +F+C A G P P I W K+ +++ + + I + I+P +D
Sbjct: 20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ--SRYTVLEQPGGISI-LRIEPVRAGRD 76
Query: 61 AGYYECVADNPF 72
YECVA+N
Sbjct: 77 DAPYECVAENGV 88
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.5 bits (165), Expect = 1e-16
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ C+A G P P I W KD + + T + E N ++I A D
Sbjct: 22 VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE----NGV----LQIRYAKLGD 73
Query: 61 AGYYECVADNPF 72
G Y C+A P
Sbjct: 74 TGRYTCIASTPS 85
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 66.7 bits (163), Expect = 1e-16
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 14/69 (20%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G +T C P P I W KD + L + + + +D G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLP----------LPPSPVLI----LPEIGPQDQG 70
Query: 63 YYECVADNP 71
Y CVA +
Sbjct: 71 TYSCVATHS 79
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 70.7 bits (173), Expect = 2e-16
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G+ + C G P P ++W K++ L + + I+ + D
Sbjct: 235 QEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY----FTINGVSTAD 290
Query: 61 AGYYECVADNPF 72
+G Y V N +
Sbjct: 291 SGKYGLVVKNKY 302
Score = 57.2 bits (138), Expect = 1e-11
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 3 GRKITFFCMAEGF-PRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ C HI W KD+ E++ K+ + I ++KD
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG--------ICTLLITEFSKKD 72
Query: 61 AGYYECVADNP 71
AG YE + +
Sbjct: 73 AGIYEVILKDD 83
Score = 56.8 bits (137), Expect = 2e-11
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67
+ + + W+ + + + + G ++I+ T D G Y
Sbjct: 128 YSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG--VTGEQ---IWLQINEPTPNDKGKYVME 182
Query: 68 ADNPF 72
+
Sbjct: 183 LFDGK 187
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 67.0 bits (164), Expect = 2e-16
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + F G TW K ++ ++ +V N+ SK+ I A Q+ G
Sbjct: 22 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE-----NSENGSKLTILAARQEHCG 76
Query: 63 YYECVADNPF 72
Y + +N
Sbjct: 77 CYTLLVENKL 86
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 69.1 bits (169), Expect = 2e-16
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
++G+ +T C A G P P I W K + +K I +D
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST-----SGAVLK----IFNIQLED 176
Query: 61 AGYYECVADNP 71
G YEC A+N
Sbjct: 177 EGIYECEAENI 187
Score = 46.0 bits (109), Expect = 9e-08
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 13/75 (17%)
Query: 3 GRKITFFCMAEGFPRP--HITWTKDDIELTF---HKYFQVHEWFLGNNTIKSKMEIDPAT 57
G+ + C W ++ + + F + I
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT--------NGNLYIANVE 74
Query: 58 QKDAGYYECVADNPF 72
D G Y C +P
Sbjct: 75 ASDKGNYSCFVSSPS 89
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 66.2 bits (162), Expect = 3e-16
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G G P P TWT D V + + + A + D+G
Sbjct: 17 GFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSSTTSIFFPSAKRADSG 71
Query: 63 YYECVADNP 71
Y+ N
Sbjct: 72 NYKLKVKNE 80
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 66.3 bits (162), Expect = 3e-16
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F C A G P P + W K+ E ++ + ++ ++ D G
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL----IMESVVPSDKG 78
Query: 63 YYECVADNP 71
Y CV +N
Sbjct: 79 NYTCVVENE 87
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 68.7 bits (168), Expect = 3e-16
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G+ + C G P P ++W K++ L + + I+ + D
Sbjct: 130 QEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY----FTINGVSTAD 185
Query: 61 AGYYECVADNPF 72
+G Y V N +
Sbjct: 186 SGKYGLVVKNKY 197
Score = 56.4 bits (136), Expect = 1e-11
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 3 GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
I + + + W+ + + + + G + ++I+ T D
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG--VTGE---QIWLQINEPTPNDK 71
Query: 62 GYYECVADNPF 72
G Y +
Sbjct: 72 GKYVMELFDGK 82
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 65.8 bits (161), Expect = 3e-16
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
GR G P P ++W + + ++ G ++ + + DAG
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS----LIFEVVRASDAG 75
Query: 63 YYECVADNP 71
Y CVA N
Sbjct: 76 AYACVAKNR 84
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 66.3 bits (162), Expect = 4e-16
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + C P P + W +++ + F+ +++ +NT + + I +KDA
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDA 85
Query: 62 GYYECVADNPF 72
G+Y A N
Sbjct: 86 GWYTVSAVNEA 96
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 68.2 bits (167), Expect = 4e-16
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ G P P + + +D E+ FQ+ + I A +D+G
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS-----QEGDLYSLLIAEAYPEDSG 172
Query: 63 YYECVADNPF 72
Y A N
Sbjct: 173 TYSVNATNSV 182
Score = 66.7 bits (163), Expect = 1e-15
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G TF GFP P ++W +D ++ V F +K+ I T+ +
Sbjct: 18 LEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR---AKLTIPAVTKAN 74
Query: 61 AGYYECVADNP 71
+G Y A N
Sbjct: 75 SGRYSLKATNG 85
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 65.8 bits (161), Expect = 4e-16
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ + +G P+P ++W ++ + + E G + I A + DAG
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR----LRILAAERGDAG 75
Query: 63 YYECVADNPF 72
+Y C A N +
Sbjct: 76 FYTCKAVNEY 85
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 65.9 bits (161), Expect = 4e-16
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ C G P P ++W D + ++ G ++ + I+P T +DAG
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS----LIIEPVTSRDAG 79
Query: 63 YYECVADNP 71
Y C+A N
Sbjct: 80 IYTCIATNR 88
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 70.2 bits (172), Expect = 4e-16
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G + C +G P ++W KD EL K +++ + + I D
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVDSAD 451
Query: 61 AGYYECVADNPF 72
G Y+C A N
Sbjct: 452 IGEYQCKASNDV 463
Score = 64.4 bits (157), Expect = 4e-14
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G TF C G ITW KD+ E+ +++ + N + + T+ DAG
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT--LVENTAT---LTVLKVTKGDAG 266
Query: 63 YYECVADNP 71
Y C A N
Sbjct: 267 QYTCYASNV 275
Score = 62.5 bits (152), Expect = 2e-13
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ C G P + W KD+ E+ F++ F+ + + +E+ + +D+G
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESV---AVLEMYNLSVEDSG 360
Query: 63 YYECVADNP 71
Y C A N
Sbjct: 361 DYTCEAHNA 369
Score = 62.5 bits (152), Expect = 2e-13
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G IT C +G P I W K+ +L +++ F N + + I+ D G
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQ--FKNNV---ASLVINKVDHSDVG 74
Query: 63 YYECVADNPF 72
Y C A+N
Sbjct: 75 EYTCKAENSV 84
Score = 59.4 bits (144), Expect = 3e-12
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G ++ EG + W KD E+ + + + ++ A +A
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISY-----SENIATLQFSRAEPANA 546
Query: 62 GYYECVADNPF 72
G Y C N
Sbjct: 547 GKYTCQIKNEA 557
Score = 56.7 bits (137), Expect = 2e-11
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + F C G ++W KD L Q F+ N + ++I Q G
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS--FIHNV---ATLQILQTDQSHVG 170
Query: 63 YYECVADNPF 72
Y C A NP
Sbjct: 171 QYNCSASNPL 180
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 65.8 bits (161), Expect = 5e-16
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+G I C A G P P I W KD+ L + + GN + I ++D
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRN----LTIRRVRKED 75
Query: 61 AGYYECVADNP 71
G Y C A +
Sbjct: 76 EGLYTCQACSV 86
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 67.9 bits (166), Expect = 5e-16
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE--WFLGNNTIKSKMEIDPATQ 58
++T C AEG P P ITW + TF + + + + S + I
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 166
Query: 59 KDAGYYECVADNPFAIDRR 77
D+G Y+C A + ++
Sbjct: 167 SDSGRYDCEAASRIGGHQK 185
Score = 66.0 bits (161), Expect = 2e-15
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G ++TF C A G P P I+W ++ + ++ + + N + + D
Sbjct: 18 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG---SNTEL----TVRNIINSDG 70
Query: 62 GYYECVADNP 71
G Y C A N
Sbjct: 71 GPYVCRATNK 80
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 65.5 bits (160), Expect = 6e-16
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C I W +D ++L ++ + E+ + D+G
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEV---------EVQDSVPADSG 67
Query: 63 YYECVADNPF 72
Y CV +P
Sbjct: 68 LYACVTSSPS 77
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 66.0 bits (161), Expect = 6e-16
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNN--TIKSKMEIDPATQKD 60
G T C AEG P P I W K + K L + ++ ++ D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 61 AGYYECVADNPF 72
G Y CVA N
Sbjct: 84 EGVYVCVARNYL 95
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 69.1 bits (169), Expect = 6e-16
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
M G + C+A G P P++ W + +LT V G N ++ KD
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV-----GRNVLEL------TDVKD 266
Query: 61 AGYYECVADNPF 72
+ Y CVA +
Sbjct: 267 SANYTCVAMSSL 278
Score = 64.1 bits (156), Expect = 4e-14
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
G +F C A G P+P +TW K ++ ++ + + I P T +D
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV----LRIQPLRTPRDE 76
Query: 62 GYYECVADNPF 72
YECVA N
Sbjct: 77 NVYECVAQNSV 87
Score = 62.5 bits (152), Expect = 2e-13
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIEL---TFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
R T C A G P P ITW KD + + + + L + ++ I+ + +
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ----LRSGALQ----IESSEE 173
Query: 59 KDAGYYECVADNP 71
D G YECVA N
Sbjct: 174 TDQGKYECVATNS 186
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 65.1 bits (159), Expect = 8e-16
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C+ G P P + W K +L + + + + + A DAG
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA-----DGAEHGLLLTAALPTDAG 82
Query: 63 YYECVADNPF 72
Y C A N
Sbjct: 83 VYVCRARNAA 92
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 67.5 bits (165), Expect = 8e-16
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
R T C A G P P ITW KD + + + + ++I+ + + D G
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESI--GALQIEQSEESDQG 180
Query: 63 YYECVADNPF 72
YECVA N
Sbjct: 181 KYECVATNSA 190
Score = 61.0 bits (148), Expect = 3e-13
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
G +F C A G PRP I W K +++ ++ + ++ S + I P T +D
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF----DDGSGSVLRIQPLRTPRDE 76
Query: 62 GYYECVADNPF 72
YECVA N
Sbjct: 77 AIYECVASNNV 87
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 68.7 bits (168), Expect = 1e-15
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
I F C G P P + W K+ + YFQ+ S + I + D
Sbjct: 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGVVKSDE 377
Query: 62 GYYECVADNPFAIDRR 77
G+Y+CVA+N +
Sbjct: 378 GFYQCVAENEAGNAQS 393
Score = 67.6 bits (165), Expect = 3e-15
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
+ G+ C G+P P TW + + I+L KY LG + + I T
Sbjct: 234 IEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL-----LGGSNL----LISNVTD 284
Query: 59 KDAGYYECVADNPFAIDRR 77
D+G Y CV
Sbjct: 285 DDSGTYTCVVTYKNENISA 303
Score = 61.0 bits (148), Expect = 7e-13
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 1 MLGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
M G + C AE P I W KD + L + + G+ I + +
Sbjct: 34 MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI-QNILHSRHHKP 92
Query: 60 DAGYYECVADNPFA 73
D G Y+C A +
Sbjct: 93 DEGLYQCEASLGDS 106
Score = 58.7 bits (142), Expect = 5e-12
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKY---FQVHEWFLGNNTIKSKMEIDPATQK 59
G + C G P P I W K+ +L V + + +I
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP----SGAL----QISRLQPG 187
Query: 60 DAGYYECVADNP 71
D+G Y C A NP
Sbjct: 188 DSGVYRCSARNP 199
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 65.1 bits (159), Expect = 1e-15
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ +G PRP + WTK L + VH +T+ + A + D+G
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSR---VHVRTSDFDTV---FFVRQAARSDSG 92
Query: 63 YYECVADNPF 72
YE
Sbjct: 93 EYELSVQIEN 102
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 66.3 bits (162), Expect = 2e-15
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G F C A G P + ++ + V ++S++ I A +DA
Sbjct: 16 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-----KEGVRSRLTIYNANIEDA 70
Query: 62 GYYECVADNP 71
G Y C A +
Sbjct: 71 GIYRCQATDA 80
Score = 66.0 bits (161), Expect = 2e-15
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G C P P ++W + E+T + L NN ++ I + D G
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA--MLANNNLQ----ILNINKSDEG 164
Query: 63 YYECVADNP 71
Y C
Sbjct: 165 IYRCEGRVE 173
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 67.2 bits (164), Expect = 2e-15
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F C A G P P + W K+ E ++ + ++ ++ D G
Sbjct: 34 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKG 89
Query: 63 YYECVADNP 71
Y CV +N
Sbjct: 90 NYTCVVENE 98
Score = 64.5 bits (157), Expect = 1e-14
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK------YFQVHEWFLGNNTIKSKMEID 54
++G + F C +PHI W K + Y +V + N++ + +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 55 PATQKDAGYYECVADNPF 72
T+ DAG Y C N
Sbjct: 191 NVTEADAGEYICKVSNYI 208
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 68.4 bits (167), Expect = 2e-15
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G + C+A G P P I W K +L K N + I +++D
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE----NFNKA----LRITNVSEED 286
Query: 61 AGYYECVADNPFAIDRR 77
+G Y C+A N R
Sbjct: 287 SGEYFCLASNKMGSIRH 303
Score = 65.3 bits (159), Expect = 2e-14
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
I C A+G P P WT++ K +V + T+ ++ G
Sbjct: 32 RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVS-MRRRSGTLVIDFRSGGRPEEYEG 90
Query: 63 YYECVADNPF 72
Y+C A N F
Sbjct: 91 EYQCFARNKF 100
Score = 63.7 bits (155), Expect = 7e-14
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G C A G P+P + W + L E + +TI
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE--VAGDTII----FRDTQISSRA 380
Query: 63 YYECVADNPF 72
Y+C N
Sbjct: 381 VYQCNTSNEH 390
Score = 48.7 bits (116), Expect = 1e-08
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 3 GRKITFFCMA-EGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G +T C G P P I W +E + Q H G+ + +
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN---GD------LYFSNVMLQ 181
Query: 60 DA-GYYECVADNPF 72
D Y C A F
Sbjct: 182 DMQTDYSCNARFHF 195
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 65.3 bits (159), Expect = 2e-15
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F C EG+P P + W KDD + ++FQ+ GN + + I D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS----LTISEVCGDDDA 111
Query: 63 YYECVADNP 71
Y C A N
Sbjct: 112 KYTCKAVNS 120
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 68.0 bits (166), Expect = 2e-15
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G+ +T C A G P P I W K D T W + I +D
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK-------WLSSEPLL----HIQNVDFED 268
Query: 61 AGYYECVADNP 71
G YEC A+N
Sbjct: 269 EGTYECEAENI 279
Score = 67.2 bits (164), Expect = 4e-15
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + + C+A G PRP + W +D L +V ++ +D+G
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-----GGELR----FSKLVLEDSG 359
Query: 63 YYECVADNP 71
Y+CVA+N
Sbjct: 360 MYQCVAENK 368
Score = 61.4 bits (149), Expect = 4e-13
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
K+T C A P W + EL + L + + +P KDAG
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR---LVAGDL---VISNPVKAKDAG 75
Query: 63 YYECVADNPF 72
Y+CVA N
Sbjct: 76 SYQCVATNAR 85
Score = 54.1 bits (130), Expect = 2e-10
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + F C +P W ++ + N + I D
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN-----LYIAKTEASDL 170
Query: 62 GYYECVADNPF 72
G Y C A +
Sbjct: 171 GNYSCFATSHI 181
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 65.0 bits (158), Expect = 2e-15
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFH--------KYFQVHEWFLGNNTIKSKMEID 54
G + C A G P P I W + + +VH + S + ID
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 55 PATQKDAGYYECVADN 70
++D G YEC A N
Sbjct: 96 TLVEEDTGTYECRASN 111
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 66.9 bits (163), Expect = 2e-15
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F C A G P P I+W K+ E + ++ ++ D G
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVVPSDRG 85
Query: 63 YYECVADNP 71
Y CV +N
Sbjct: 86 NYTCVVENK 94
Score = 60.7 bits (147), Expect = 5e-13
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDD------IELTFHKYFQVHEWFLGNNTIK-SKMEI 53
+LG + F C +PHI W K + Y V + ++ + ++ +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 54 DPATQKDAGYYECVADNPF 72
+++D G Y C A N
Sbjct: 187 ANVSERDGGEYLCRATNFI 205
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 66.4 bits (162), Expect = 2e-15
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G ++ C +P I+W +D L Y + + N S +E+ P ++ D
Sbjct: 31 WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK---IYNTPSASYLEVTPDSEND 87
Query: 61 AGYYECVADNPF 72
G Y C A N
Sbjct: 88 FGNYNCTAVNRI 99
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 66.4 bits (162), Expect = 3e-15
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G+ + C A G P W K + E+ GN S++ + KD
Sbjct: 31 LAGQFVKLCCRATGHPFVQYQWFKMNKEIP-----------NGNT---SELIFNAVHVKD 76
Query: 61 AGYYECVADNPF 72
AG+Y C +N F
Sbjct: 77 AGFYVCRVNNNF 88
Score = 62.2 bits (151), Expect = 1e-13
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
M G + C+A G P PH W K+++ LT + K + +
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLT--------------HETKKLYMVPYVDLEH 176
Query: 61 AGYYECVADNP 71
G Y C N
Sbjct: 177 QGTYWCHVYND 187
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 67.9 bits (165), Expect = 3e-15
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G I C A G P P I W KD+ L + + GN + I ++D G
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRNL----TIRRVRKEDEG 733
Query: 63 YYECVADNPFAIDRR 77
Y C A + +
Sbjct: 734 LYTCQACSVLGCAKV 748
Score = 63.2 bits (153), Expect = 1e-13
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G ++ G+P P I W K+ I L + + + I +++D
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK----------AGHVLTIMEVSERDT 393
Query: 62 GYYECVADNPFAIDRR 77
G Y + NP + +++
Sbjct: 394 GNYTVILTNPISKEKQ 409
Score = 57.5 bits (138), Expect = 1e-11
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-------------- 48
++ +C A+ ++TW K + ++ N
Sbjct: 564 QESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTND 623
Query: 49 -SKMEIDPATQKDAGYYECVADNPF 72
ME+ A+ +D G Y C+A +
Sbjct: 624 ILIMELKNASLQDQGDYVCLAQDRK 648
Score = 57.1 bits (137), Expect = 2e-11
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 3 GRKITFFCMAEGFPRPHITWTKD-----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
G K+ C A I + + + S + ID T
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 58 QKDAGYYECVADNPF 72
+ D G Y C A +
Sbjct: 299 RSDQGLYTCAASSGL 313
Score = 49.8 bits (118), Expect = 7e-09
Identities = 20/109 (18%), Positives = 28/109 (25%), Gaps = 29/109 (26%)
Query: 1 MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHK--------------YFQVHEWFLGNN 45
G T C P P HI W E ++ ++ E F G N
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495
Query: 46 TI--------------KSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80
I K+ + + Y+C A N R
Sbjct: 496 KIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544
Score = 47.8 bits (113), Expect = 3e-08
Identities = 8/70 (11%), Positives = 13/70 (18%), Gaps = 6/70 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ C G W + + + I D G
Sbjct: 46 NTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECS----DGLFCKTLTIPKVIGNDTG 99
Query: 63 YYECVADNPF 72
Y+C
Sbjct: 100 AYKCFYRETD 109
Score = 39.7 bits (92), Expect = 2e-05
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 14/72 (19%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI----KSKMEIDPATQ 58
+ + C+ +++ + + N I K I
Sbjct: 143 NKTVVIPCLGSI-SNLNVSL---------CARYPEKRFVPDGNRISWDSKKGFTIPSYMI 192
Query: 59 KDAGYYECVADN 70
AG C A
Sbjct: 193 SYAGMVFCEAKI 204
Score = 26.6 bits (58), Expect = 0.94
Identities = 2/24 (8%), Positives = 6/24 (25%)
Query: 53 IDPATQKDAGYYECVADNPFAIDR 76
+ + CV ++
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGL 24
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 67.1 bits (164), Expect = 3e-15
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKD 60
T C G P+P + W + E+ +++ E+ G ++ I T D
Sbjct: 18 YQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDDD 73
Query: 61 AGYYECVADNPF 72
A Y+ A N
Sbjct: 74 ATVYQVRATNQG 85
Score = 63.2 bits (154), Expect = 8e-14
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G ++ G P P ITW K + + ++QV + S + + +KD
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGVERKD 172
Query: 61 AGYYECVADNPF 72
AG+Y A N F
Sbjct: 173 AGFYVVCAKNRF 184
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 63.5 bits (155), Expect = 3e-15
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
F A G PRP WTKD +T +++ E + +EI D+G
Sbjct: 21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSG 75
Query: 63 YYECVADNPF 72
Y C N
Sbjct: 76 LYTCTVKNSA 85
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 65.2 bits (159), Expect = 4e-15
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G C P I W ++ K + L NN ++ I + D
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI--VLSNNYLQ----IRGIKKTD 166
Query: 61 AGYYECVADNP 71
G Y C
Sbjct: 167 EGTYRCEGRIL 177
Score = 57.9 bits (140), Expect = 3e-12
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 2 LGRKITFFCMAEGFPR-PHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+G F C G + I+W + +L+ ++ W ++ S + I A
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS---STLTIYNANID 72
Query: 60 DAGYYECVADNP 71
DAG Y+CV
Sbjct: 73 DAGIYKCVVTAE 84
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 65.7 bits (160), Expect = 4e-15
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
T C EG P P I W KD ++ ++ + H + + + ++D G
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNE-KKSHRVQFKDGALFFYRTMQGKKEQDGG 82
Query: 63 YYECVADNPF 72
Y CVA N
Sbjct: 83 EYWCVAKNRV 92
Score = 58.7 bits (142), Expect = 2e-12
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 3 GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G C +G P P + W KD + L K + I D
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDE 182
Query: 62 GYYECVADNPFAIDR 76
G Y+C+A N
Sbjct: 183 GNYKCIAQNLVGTRE 197
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 63.8 bits (155), Expect = 4e-15
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
+G P P + W + L + + E + ++ T + G Y
Sbjct: 19 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78
Query: 65 ECVADNPFAIDRR 77
+A NPF
Sbjct: 79 TLLAANPFGQASA 91
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 65.8 bits (160), Expect = 5e-15
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPAT 57
+G + C +G P +W KD I + + + + TI + DP T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 58 QKDAGYYECVADNPFAIDRR 77
D+G Y C A N + R
Sbjct: 178 AFDSGEYYCQAQNGYGTAMR 197
Score = 65.0 bits (158), Expect = 8e-15
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPATQK 59
I C GF P + W T + + + S + T+K
Sbjct: 16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75
Query: 60 DAGYYECVADNP 71
D G Y C+
Sbjct: 76 DNGEYTCMVSEE 87
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 65.5 bits (160), Expect = 5e-15
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
LG C G P P I W + EL + +++ + + + Q+D
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTEEQED 74
Query: 61 AGYYECVADNP 71
G Y C+A N
Sbjct: 75 EGVYTCIATNE 85
Score = 65.1 bits (159), Expect = 6e-15
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK-DA 61
G + M G P P +TW L + + N + + + +K A
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE-----NTEHYTHLVMKNVQRKTHA 172
Query: 62 GYYECVADNPF 72
G Y+ N F
Sbjct: 173 GKYKVQLSNVF 183
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 62.7 bits (153), Expect = 5e-15
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
M G + C+A G P PH W K+++ LT + K + +
Sbjct: 16 MPGSTLVLQCVAVGSPIPHYQWFKNELPLT--------------HETKKLYMVPYVDLEH 61
Query: 61 AGYYECVADNPF 72
G Y C N
Sbjct: 62 QGTYWCHVYNDR 73
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 65.4 bits (159), Expect = 6e-15
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPATQK 59
+ C GF P + W D + T + + + + + T++
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78
Query: 60 DAGYYECVADNP 71
D G Y C+
Sbjct: 79 DTGTYTCMVSEE 90
Score = 64.6 bits (157), Expect = 1e-14
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 1 MLGRKITFFCMA-EGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPAT 57
+G + C +G P TW KD I + N ++ DP +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 58 QKDAGYYECVADNPF 72
D G Y C A N +
Sbjct: 180 ASDTGEYSCEARNGY 194
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 66.8 bits (163), Expect = 6e-15
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G I C + P I W +D + L + + G +EI P + D
Sbjct: 113 WEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK---MILEIAPTSDND 169
Query: 61 AGYYECVADNPF 72
G Y C A N
Sbjct: 170 FGRYNCTATNHI 181
Score = 65.6 bits (160), Expect = 1e-14
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
++T C AEG P P ITW + T + S + I
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 60 DAGYYECVADNPF 72
D+G Y+C A +
Sbjct: 74 DSGRYDCEAASRI 86
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 66.2 bits (161), Expect = 9e-15
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F C A G P P I+W K+ E + ++ ++ D G
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVVPSDRG 193
Query: 63 YYECVADNP 71
Y CV +N
Sbjct: 194 NYTCVVENK 202
Score = 63.5 bits (154), Expect = 9e-14
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDD------IELTFHKYFQVHEWFLGNNTIK--SKMEID 54
G + F C +PHI W K + Y V + N T K + +
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 55 PATQKDAGYYECVADNPF 72
T +DAG Y C+A N
Sbjct: 297 NVTFEDAGEYTCLAGNSI 314
Score = 60.8 bits (147), Expect = 7e-13
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + C G P W KD L + V L ++ A+ +D+
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRL---------QVLNASHEDS 73
Query: 62 GYYECVADNPF 72
G Y C
Sbjct: 74 GAYSCRQRLTQ 84
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 62.9 bits (153), Expect = 9e-15
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
+ G P P + W + L K V + + + + T + G Y
Sbjct: 24 CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYNNGNYTL 82
Query: 67 VADNPF 72
+A NP
Sbjct: 83 IAKNPL 88
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 66.0 bits (161), Expect = 1e-14
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ + + C A G P+P W K+ L Q+ T+ I DA
Sbjct: 309 MEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-----QGTLN----ITIVNLSDA 359
Query: 62 GYYECVADNP 71
G Y+CVA+N
Sbjct: 360 GMYQCVAENK 369
Score = 63.7 bits (155), Expect = 8e-14
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G + C A G P P I W + D + K + N +EI Q+D
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH----KSNGI----LEIPNFQQED 269
Query: 61 AGYYECVADNP 71
AG YECVA+N
Sbjct: 270 AGSYECVAENS 280
Score = 61.4 bits (149), Expect = 4e-13
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+K+ C +G P+PHI W + ++ F+ + + ++ + +P +DAG
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYS---VVDGSL---LINNPNKTQDAG 76
Query: 63 YYECVADNPF 72
Y+C+A N F
Sbjct: 77 TYQCIATNSF 86
Score = 52.9 bits (127), Expect = 5e-10
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 3 GRKITFFCMA-EGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G+ + C W ++ ++ GN + I +
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET---GN------LYIAKVEKS 167
Query: 60 DAGYYECVADNPFAIDRR 77
D G Y CV N +
Sbjct: 168 DVGNYTCVVTNTVTNHKV 185
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 61.7 bits (150), Expect = 1e-14
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C I W +D ++L ++ + E+ + D+G
Sbjct: 24 GDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEV---------EVRDSIPADSG 73
Query: 63 YYECVADNPF 72
Y CV +P
Sbjct: 74 LYACVTSSPS 83
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.2 bits (151), Expect = 2e-14
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 2 LGRKITFFCMAEGFPRP-HITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
G K C P P I W+ + +E + V + S + I +
Sbjct: 27 HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET-ISTEEGVISTLTISNIVR 85
Query: 59 KD-AGYYECVADNPFAIDRRGFR 80
D Y C A N F D R
Sbjct: 86 ADFQTIYNCTAWNSFGSDTEIIR 108
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 63.3 bits (154), Expect = 3e-14
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEI-DPATQKD 60
G+ +C + G+P P W K + + +F+ N +++ I + +D
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 61 AGYYECVADNP 71
G YEC A N
Sbjct: 166 PGEYECNATNS 176
Score = 56.4 bits (136), Expect = 1e-11
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 2 LGRKITFFCMAEGFPRPHIT--WTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+T C + WTK+ +ELT + N I+ +
Sbjct: 17 SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK------NASNME----YRINKPRAE 66
Query: 60 DAGYYECVADNP 71
D+G Y CV
Sbjct: 67 DSGEYHCVYHFV 78
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 60.6 bits (147), Expect = 5e-14
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS--KMEIDPATQK 59
G +TF C A+ P + WT+ L + + + I
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNGK------------LPSRAMDFNGILTIRNVQPS 72
Query: 60 DAGYYECVADNPFAIDRR 77
DAG Y C N FA+D+
Sbjct: 73 DAGTYVCTGSNMFAMDQG 90
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 63.6 bits (154), Expect = 5e-14
Identities = 16/75 (21%), Positives = 23/75 (30%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G IT C+ G + WT E I+S + I A +D+G
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255
Query: 63 YYECVADNPFAIDRR 77
Y C +
Sbjct: 256 TYTCNVTESVNDHQD 270
Score = 45.5 bits (107), Expect = 2e-07
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
C + W + E + T S + + T D G
Sbjct: 15 SSTFVLTCSGSAP----VVWERMSQEPP------QEMAKAQDGTFSSVLTLTNLTGLDTG 64
Query: 63 YYECVADNPFAIDRRGFRTDY 83
Y C ++ ++ + Y
Sbjct: 65 EYFCTHNDSRGLETDERKRLY 85
Score = 38.5 bits (89), Expect = 5e-05
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 15/68 (22%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+IT C P+ +T + ++ + F G +
Sbjct: 110 ITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIF--------------EDR 154
Query: 63 YYECVADN 70
Y C
Sbjct: 155 SYICKTTI 162
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 64.0 bits (155), Expect = 7e-14
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 9/72 (12%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ F + +P+ TWT + + + +
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN---------GYSISKFCNHKHQP 390
Query: 62 GYYECVADNPFA 73
G Y A+N A
Sbjct: 391 GEYIFHAENDDA 402
Score = 61.6 bits (149), Expect = 5e-13
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-SKMEIDPATQKD 60
G + C A +TW ++ L YF++ + I+ + + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 61 AGYYECVADNPF 72
GYY C +
Sbjct: 302 TGYYTCSSSKHP 313
Score = 61.3 bits (148), Expect = 5e-13
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ IT + + W L +F + + + I T+ A
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK------MTETQA 115
Query: 62 GYYECVADNP 71
G Y +
Sbjct: 116 GEYLLFIQSE 125
Score = 54.3 bits (130), Expect = 2e-10
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 3 GRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEW-------FLGNNTIKSKMEID 54
C ++G+P P TW K D + W G S ++
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST--LN 479
Query: 55 PATQKDAGYYECVADNPF 72
+ +C A N
Sbjct: 480 MSEAIKGFLVKCCAYNSL 497
Score = 49.3 bits (117), Expect = 1e-08
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 9/71 (12%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ + C++E P P + W D + K + +
Sbjct: 153 MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---------ELFG 203
Query: 62 GYYECVADNPF 72
C A N
Sbjct: 204 TDIRCCARNEL 214
Score = 26.6 bits (58), Expect = 0.90
Identities = 3/31 (9%), Positives = 13/31 (41%)
Query: 47 IKSKMEIDPATQKDAGYYECVADNPFAIDRR 77
+ + + ++ + Y V+++P +
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCA 43
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 62.5 bits (152), Expect = 7e-14
Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+G C G P P I+W KD L + + I + D
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT----IRGGKLM----ITYTRKSD 176
Query: 61 AGYYECVADNPFAIDR 76
AG Y CV N
Sbjct: 177 AGKYVCVGTNMVGERE 192
Score = 62.1 bits (151), Expect = 1e-13
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIK-SKMEIDPATQKD 60
G T C AEG P P I W K + T + H L + ++ ++ ++ D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 61 AGYYECVADNPF 72
G Y CVA N
Sbjct: 84 EGVYVCVARNYL 95
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 63.5 bits (154), Expect = 8e-14
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 3 GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + T C + + TW +++ + + + N ++ + I A D+
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285
Query: 62 GYYECVADNPFAIDRR 77
G + C A+N F
Sbjct: 286 GVFMCYANNTFGSANV 301
Score = 63.1 bits (153), Expect = 1e-13
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 1 MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G + E FP+P H W + T N S++ +
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385
Query: 60 DAGYYECVADNP 71
+ G Y + N
Sbjct: 386 EGGTYTFLVSNS 397
Score = 61.6 bits (149), Expect = 4e-13
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTK-------DDIELTFHKYFQVHEWFLGNNTIKSKMEIDP 55
C+A GFP P I W + ++ + + ID
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDS 480
Query: 56 ATQKDAGYYECVADNPFAIDRRGFR 80
+ K G EC A N F
Sbjct: 481 SAFKHNGTVECKAYNDVGKTSAYFN 505
Score = 40.8 bits (95), Expect = 1e-05
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G +I C G + WT + ++ T N +++ + A + G
Sbjct: 51 GDEIRLLCTDPG----FVKWTFEILDET-------------NENKQNEWITEKAEATNTG 93
Query: 63 YYECVADNPFA 73
Y C + +
Sbjct: 94 KYTCTNKHGLS 104
Score = 33.5 bits (76), Expect = 0.003
Identities = 8/69 (11%), Positives = 10/69 (14%), Gaps = 8/69 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C + + L F IKS
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPK--AGIMIKSVKRAY-----HR 181
Query: 62 GYYECVADN 70
C D
Sbjct: 182 LCLHCSVDQ 190
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 59.6 bits (145), Expect = 1e-13
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F G P P W K+ +++ + + I T +D+
Sbjct: 20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE----LVIRDVTGEDSA 75
Query: 63 YYECVADNP 71
A N
Sbjct: 76 SIMVKAINI 84
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 62.4 bits (151), Expect = 2e-13
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-SKMEIDPATQKD 60
G + C A +TW ++ L YF++ + I+ + + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 61 AGYYECVADNP 71
GYY C +
Sbjct: 302 TGYYTCSSSKH 312
Score = 61.2 bits (148), Expect = 6e-13
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F + +P+ TWT + +I + G
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-----LDNGYSIS----KFCNHKHQPG 391
Query: 63 YYECVADNPFAIDRRGFR 80
Y A+N A + F
Sbjct: 392 EYIFHAENDDAQFTKMFT 409
Score = 61.2 bits (148), Expect = 6e-13
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 6/69 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
IT + + W L +F + N M I T+ AG
Sbjct: 63 SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAG 116
Query: 63 YYECVADNP 71
Y +
Sbjct: 117 EYLLFIQSE 125
Score = 50.1 bits (119), Expect = 4e-09
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 9/76 (11%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ + C++E P P + W D + K + +
Sbjct: 153 MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---------ELFG 203
Query: 62 GYYECVADNPFAIDRR 77
C A N +
Sbjct: 204 TDIRCCARNELGRECT 219
Score = 27.7 bits (61), Expect = 0.35
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 47 IKSKMEIDPATQKDAGYYECVADNPF 72
+ + + ++ + Y V+++P
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPE 38
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 58.8 bits (143), Expect = 2e-13
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ F + P + W + +EL N + +EI D+G
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT-----NTSGVLTLEILDCHTDDSG 77
Query: 63 YYECVADNP 71
Y V N
Sbjct: 78 TYRAVCTNY 86
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 60.4 bits (146), Expect = 4e-13
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 1/81 (1%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+T C FP PH+ W + + ++ + +
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAV-DLSLPKPWHL 177
Query: 63 YYECVADNPFAIDRRGFRTDY 83
CV N + + Y
Sbjct: 178 PVTCVGKNDKEEAHGVYVSGY 198
Score = 40.0 bits (93), Expect = 1e-05
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 19/88 (21%)
Query: 1 MLGRKITFFCMAE---GFPRPHITWTKD--------------DIELTFHKYFQVHEWFLG 43
LG ++T P ++W K D+ + +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 44 NNTIKSKMEIDPATQKDAGYYECVADNP 71
NT + + A G Y C
Sbjct: 64 ANT--FFLVVTAANISHDGNYLCRMKLG 89
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 58.2 bits (141), Expect = 6e-13
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G TF C + W D L ++ ++ + + KD
Sbjct: 26 QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA----QPGGYHVLTLRQLALKD 81
Query: 61 AGYYECVADN 70
+G A +
Sbjct: 82 SGTIYFEAGD 91
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 58.5 bits (141), Expect = 7e-13
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 3 GRKITFFCMAEGFP---RPHITWTKDDIELTFHK---YFQVHEWF-LGNNTIKSKMEIDP 55
G ITF + +P I W K K + Q+ E F + +M+I
Sbjct: 22 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 81
Query: 56 ATQKDAGYYECVADNPF 72
A AG Y C
Sbjct: 82 AKDNFAGNYRCEVTYKD 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 60.5 bits (146), Expect = 9e-13
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 3 GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIK--SKMEIDPATQK 59
G T C + + W K + + + + W G+ + + I A
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 60 DAGYYECVADNPFAIDRR 77
D+G + C A+N F
Sbjct: 263 DSGVFMCYANNTFGSANV 280
Score = 45.5 bits (107), Expect = 2e-07
Identities = 8/69 (11%), Positives = 12/69 (17%), Gaps = 8/69 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C + + D L F + TI +
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK--AGITI-----KNVKRAYHR 158
Query: 62 GYYECVADN 70
C A
Sbjct: 159 LCVRCAAQR 167
Score = 38.9 bits (90), Expect = 4e-05
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 16/68 (23%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ C+ F + WT K++ + A G
Sbjct: 27 GDTLSLTCIDPDF----VRWTFKTYFNEMV------------ENKKNEWIQEKAEATRTG 70
Query: 63 YYECVADN 70
Y C N
Sbjct: 71 TYTCSNSN 78
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 59.6 bits (144), Expect = 2e-12
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
++ F+ AE + + ++ E+ +++H + NT +M ++ +D
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDE 178
Query: 62 GYYECVADNPFA 73
G Y + A
Sbjct: 179 GTYTFQLQDGKA 190
Score = 58.8 bits (142), Expect = 4e-12
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 3 GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ C + HI W KD+ E++ + F + I ++KDA
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD----FKDGI---CTLLITEFSKKDA 288
Query: 62 GYYECVADNPF 72
G YE + +
Sbjct: 289 GIYEVILKDDR 299
Score = 55.8 bits (134), Expect = 5e-11
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F C + P+ +W+KD + +V GN K+KM D G
Sbjct: 18 VISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVES--KGN---KTKMTFKDLGMDDLG 71
Query: 63 YYECVADNP 71
Y C +
Sbjct: 72 IYSCDVTDT 80
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 58.4 bits (141), Expect = 2e-12
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
G T C + P + W +D L + + E + + S++ I
Sbjct: 17 GLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ 76
Query: 58 QKDAGYYECVADNPF 72
D G Y+C+
Sbjct: 77 LSDTGQYQCLVFLGH 91
Score = 46.8 bits (111), Expect = 5e-08
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 13/72 (18%)
Query: 1 MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
C A+G P P + W +D + L + +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLA------------TAPGHGPQRSLHVPGLN 166
Query: 60 DAGYYECVADNP 71
+ C A N
Sbjct: 167 KTSSFSCEAHNA 178
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 59.2 bits (143), Expect = 3e-12
Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 16/75 (21%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C + P P +W + I + I T + G
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQQHT----------------QVLFIAKITPNNNG 617
Query: 63 YYECVADNPFAIDRR 77
Y C N
Sbjct: 618 TYACFVSNLATGRNN 632
Score = 59.2 bits (143), Expect = 3e-12
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ F C E W + L Q+ GN T + + T+ D
Sbjct: 480 EDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQL---SNGNRT----LTLFNVTRND 531
Query: 61 AGYYECVADNPF 72
A Y C N
Sbjct: 532 ARAYVCGIQNSV 543
Score = 55.3 bits (133), Expect = 7e-11
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ F C E W ++ L Q+ GN T+ + T+ D
Sbjct: 126 KDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSN---GNRTL----TLFNVTRNDTA 177
Query: 63 YYECVADNPF 72
Y+C NP
Sbjct: 178 SYKCETQNPV 187
Score = 55.0 bits (132), Expect = 8e-11
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ C E W ++ L Q+ N T+ + T+ D G
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN---DNRTL----TLLSVTRNDVG 355
Query: 63 YYECVADNP 71
YEC N
Sbjct: 356 PYECGIQNE 364
Score = 53.8 bits (129), Expect = 2e-10
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 16/69 (23%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ C A P +W D + I T+K++G
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQ------------HTQEL----FISNITEKNSG 439
Query: 63 YYECVADNP 71
Y C A+N
Sbjct: 440 LYTCQANNS 448
Score = 53.0 bits (127), Expect = 4e-10
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 16/75 (21%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C A P +W + F + ++ I T ++G
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGT-------------FQQST---QELFIPNITVNNSG 261
Query: 63 YYECVADNPFAIDRR 77
Y C A N R
Sbjct: 262 SYTCQAHNSDTGLNR 276
Score = 53.0 bits (127), Expect = 5e-10
Identities = 10/89 (11%), Positives = 21/89 (23%), Gaps = 17/89 (19%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---------- 52
G+++ +W K + Q+ + +G
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGE---RVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 53 ----IDPATQKDAGYYECVADNPFAIDRR 77
I Q D G+Y ++
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEE 99
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 58.6 bits (141), Expect = 4e-12
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C++ G P ITW D + G T+ S + P++Q D
Sbjct: 132 EPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILVPSSQVDG 189
Query: 62 GYYECVADNP 71
C ++
Sbjct: 190 KNVTCKVEHE 199
Score = 54.7 bits (131), Expect = 1e-10
Identities = 12/70 (17%), Positives = 16/70 (22%), Gaps = 12/70 (17%)
Query: 3 GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ T C A P P W+ L Q + I P +
Sbjct: 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-------GAQ----LLIRPVDKPIN 280
Query: 62 GYYECVADNP 71
C N
Sbjct: 281 TTLICNVTNA 290
Score = 42.0 bits (98), Expect = 3e-06
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 18/96 (18%)
Query: 1 MLGRKITFFCMAEGFPRP-----HITWTKDDIELTFHKYFQVHE---------WFLGNNT 46
LG +T C + +TW + + + Q F+
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 47 IKSKME----IDPATQKDAGYYECVADNPFAIDRRG 78
+ +D G Y C+ R
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV 108
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 55.4 bits (134), Expect = 4e-12
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 3 GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + + C E + + +TW +L + +++ + + + T+ D
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT-----YEDGVAILYVKDITKLDD 70
Query: 62 GYYECVADNPF 72
G Y C N +
Sbjct: 71 GTYRCKVVNDY 81
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 58.6 bits (141), Expect = 4e-12
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIEL--TFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
+G + C EG W ++E T K + L T+ + +
Sbjct: 171 DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL---TL-----ANVTSD 222
Query: 59 KDAGYYECVADNPF 72
+ C A+N
Sbjct: 223 LNRKNVTCWAENDV 236
Score = 57.4 bits (138), Expect = 1e-11
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK--SKMEIDPATQKDAGY 63
+G P P + W + L + N + ++ T + G
Sbjct: 264 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 323
Query: 64 YECVADNPF 72
Y +A NPF
Sbjct: 324 YTLLAANPF 332
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 55.0 bits (133), Expect = 7e-12
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C P + W KD + + + + T + + I A+ KDAG
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYD----VVCEGT-MAMLVIRGASLKDAG 76
Query: 63 YYECVADN 70
Y C +
Sbjct: 77 EYTCEVEA 84
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 58.1 bits (140), Expect = 7e-12
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHI-TWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+ G C A ++ +L + H + +D +
Sbjct: 199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHN---NRYQKVLTLNLDQVDFQ 255
Query: 60 DAGYYECVADNPFAIDRR 77
AG Y CVA N
Sbjct: 256 HAGNYSCVASNVQGKHST 273
Score = 45.7 bits (108), Expect = 2e-07
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 10/70 (14%)
Query: 3 GRKITFFCMAEG-FPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ C+ ++ + L H + I A
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP--------WHGFTIHRAKFIQ 155
Query: 61 AGYYECVADN 70
+ Y+C A
Sbjct: 156 SQDYQCSALM 165
Score = 41.5 bits (97), Expect = 4e-06
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G +T C+ G + W W L ++ S + + AT ++ G
Sbjct: 19 GATVTLRCVGNGS----VEWDGPPSP----------HWTLYSDGSSSILSTNNATFQNTG 64
Query: 63 YYECVADNP 71
Y C
Sbjct: 65 TYRCTEPGD 73
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 57.0 bits (137), Expect = 7e-12
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+G C EG W K T + + I + A+ +
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM---PTPWLAEMTSPVIS----VKNASSEY 187
Query: 61 AGYYECVADNPFAIDRR 77
+G Y C N D+
Sbjct: 188 SGTYSCTVQNRVGSDQC 204
Score = 37.4 bits (86), Expect = 1e-04
Identities = 12/96 (12%), Positives = 18/96 (18%), Gaps = 27/96 (28%)
Query: 1 MLGRKITFFCMAEGFPRP----HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---- 52
G C P I W + QV + G+ +
Sbjct: 13 AKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVD--QVIILYSGDKIYDNYYPDLKG 70
Query: 53 -----------------IDPATQKDAGYYECVADNP 71
+ D G Y+C
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKA 106
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 57.8 bits (139), Expect = 8e-12
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME-------I 53
LG +I C G W + + +++ N + I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281
Query: 54 DPATQKD-AGYYECVADNPFAIDRRGFR 80
+ + C A N ID +
Sbjct: 282 SEIESRFYKHPFTCFAKNTHGIDAAYIQ 309
Score = 52.4 bits (125), Expect = 8e-10
Identities = 12/77 (15%), Positives = 19/77 (24%), Gaps = 14/77 (18%)
Query: 2 LGRKITFFC------MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP 55
+ C E P + W KD L + + +
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG----VKDRLI----VMN 168
Query: 56 ATQKDAGYYECVADNPF 72
+K G Y C A +
Sbjct: 169 VAEKHRGNYTCHASYTY 185
Score = 49.0 bits (116), Expect = 1e-08
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 10 CMAEGFP-RPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
C + ITW KDD ++ + ++H+ K K+ PA +D+G+Y C
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYC 79
Query: 67 VADNP 71
V N
Sbjct: 80 VVRNS 84
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 54.7 bits (132), Expect = 1e-11
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 6/69 (8%)
Query: 3 GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +F C ++ WT + FQ K + + A DA
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT-----RQGRKYILVVREAAPSDA 77
Query: 62 GYYECVADN 70
G
Sbjct: 78 GEVVFSVRG 86
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 54.3 bits (131), Expect = 1e-11
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
++ C TW KD ++ + V + K ++ + A +D+G
Sbjct: 25 SERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAKVQDSG 78
Query: 63 YYECVADN 70
+EC +
Sbjct: 79 EFECRTEG 86
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 57.0 bits (137), Expect = 1e-11
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 7 TFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
I W KD ++ K+ V G + + +DAGYY
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV----RGTTHLL----VHDVALEDAGYY 195
Query: 65 ECVADNPF 72
CV
Sbjct: 196 RCVLTFAH 203
Score = 55.1 bits (132), Expect = 8e-11
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ ++ A PR ++TW K+D T + W + + PA Q+D+G Y
Sbjct: 43 VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-----LWLLPALQEDSGTYV 97
Query: 66 CVADNPFAIDRR 77
C N D+
Sbjct: 98 CTTRNASYCDKM 109
Score = 48.5 bits (115), Expect = 2e-08
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 1 MLGRKITFFCMA---EGFPRPHITWTKDDIELTFHKYFQVHEW--------FLGNNTIKS 49
LG ++T C G P + W + Y N I+
Sbjct: 239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV 298
Query: 50 KMEIDPATQKDAGY-YECVADNPFAIDR 76
+ DP T++D ++CV N +
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSFQT 326
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 57.0 bits (138), Expect = 2e-11
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDD---IELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
G + F C A+G P P I W + + V + T+ E+ A
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP----DGTL----EVRYAQ 449
Query: 58 QKDAGYYECVADNPF 72
+D G Y C+A N
Sbjct: 450 VQDNGTYLCIAANAG 464
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 53.9 bits (130), Expect = 2e-11
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ + W K+ +ELT F+ F + + + Q+D G
Sbjct: 23 GDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGK-RHILIFSDVVQEDRG 80
Query: 63 YYECVADN 70
Y+ + +
Sbjct: 81 RYQVITNG 88
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 56.7 bits (137), Expect = 2e-11
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G C A ++W + + H ++V L + T+ T +D
Sbjct: 354 TEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL----NFTNVTVQD 408
Query: 61 AGYYECVADNPF 72
G Y C+ N
Sbjct: 409 TGMYTCMVSNSV 420
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 54.0 bits (130), Expect = 2e-11
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G T C + +TW KD +L+ +V ++ + A Q +AG
Sbjct: 26 GASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQAGQAEAG 79
Query: 63 YYECVADN 70
Y C A
Sbjct: 80 EYSCEAGG 87
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 56.5 bits (136), Expect = 2e-11
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 3 GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G C A + + D +L + + + ++ +DA
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV---RALSLNAVDFQDA 257
Query: 62 GYYECVADNPFAIDRR 77
G Y CVA N
Sbjct: 258 GIYSCVASNDVGTRTA 273
Score = 49.2 bits (117), Expect = 1e-08
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 3 GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G++ C+ + ++ ++ + +F I A D+
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLR---KTVYFFSPWRGF----IIRKAKVLDS 156
Query: 62 GYYECVADN 70
Y C
Sbjct: 157 NTYVCKTMV 165
Score = 44.2 bits (104), Expect = 6e-07
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 14/71 (19%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +T C++ G + W W L + S + AT K+
Sbjct: 18 PGETVTLRCVSNG----SVEWDGPISPY----------WTLDPESPGSTLTTRNATFKNT 63
Query: 62 GYYECVADNPF 72
G Y C
Sbjct: 64 GTYRCTELEDP 74
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 53.5 bits (129), Expect = 2e-11
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ F C + W K+ +E+ K + K+ ID +D
Sbjct: 21 KAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDVRPED 74
Query: 61 AGYYECVADN 70
G Y V D
Sbjct: 75 EGDYTFVPDG 84
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 55.7 bits (134), Expect = 2e-11
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ + + + + ++ E+ +++H + NT +M ++ +D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDEG 74
Query: 63 YYECVADNPFAIDR 76
Y + A +
Sbjct: 75 TYTFQLQDGKATNH 88
Score = 54.6 bits (131), Expect = 6e-11
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 3 GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ C + HI W KD+ E++ + + G + I ++KDA
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GI----CTLLITEFSKKDA 183
Query: 62 GYYECVADNPF 72
G YE + +
Sbjct: 184 GIYEVILKDDR 194
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 56.3 bits (135), Expect = 3e-11
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 11/70 (15%)
Query: 3 GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ C A+ P WT + L Q F P A
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFF----------KGPINYSLA 296
Query: 62 GYYECVADNP 71
G Y C A NP
Sbjct: 297 GTYICEATNP 306
Score = 53.2 bits (127), Expect = 4e-10
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 3 GRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ + C A G P ++W ++ + G T+ S+ + P+ +
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN---GTVTVISRYRLVPSREAHQ 206
Query: 62 GYYECVADNP 71
C+ +
Sbjct: 207 QSLACIVNYH 216
Score = 39.7 bits (92), Expect = 2e-05
Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 17/95 (17%)
Query: 1 MLGRKITFFCMAEGFPRP----HITWTKDDIEL-----TFHKYFQVHE--------WFLG 43
+G + C +TW K ++ V FL
Sbjct: 27 FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR 86
Query: 44 NNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG 78
+ + + +D G Y C +R
Sbjct: 87 PSFTDGTIRLSRLELEDEGVYICEFATFPTGNRES 121
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 55.8 bits (134), Expect = 4e-11
Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 18/70 (25%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ T C A G P P + KD E T+ G
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKD------------------GTFPLPIGESVTVTRDLEG 241
Query: 63 YYECVADNPF 72
Y C A +
Sbjct: 242 TYLCRARSTQ 251
Score = 36.6 bits (84), Expect = 3e-04
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 19/72 (26%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++T C A PR +T + AT +D G
Sbjct: 113 GTEVTVKCEAH--PRAKVTL----------------NGVPAQPLGPRAQLLLKATPEDNG 154
Query: 63 Y-YECVADNPFA 73
+ C A A
Sbjct: 155 RSFSCSATLEVA 166
Score = 35.8 bits (82), Expect = 6e-04
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 11/73 (15%)
Query: 3 GRKITFFCMAEG-FPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP-ATQ 58
+ T C +G FP + D L GN++ +K + A
Sbjct: 18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLN-------PTVTYGNDSFSAKASVSVTAED 70
Query: 59 KDAGYYECVADNP 71
+ C
Sbjct: 71 EGTQRLTCAVILG 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 55.9 bits (135), Expect = 4e-11
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 6/72 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
GR C P + W + + H L + T+ D
Sbjct: 365 SEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL----NFSHVLLSD 418
Query: 61 AGYYECVADNPF 72
G Y C+ N
Sbjct: 419 TGVYTCMVTNVA 430
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 54.2 bits (130), Expect = 6e-11
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 15/68 (22%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ +T + P + + G T+ + +D+G
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKN-----------IQGGKTLS----VSQLELQDSG 156
Query: 63 YYECVADN 70
+ C
Sbjct: 157 TWTCTVLQ 164
Score = 50.4 bits (120), Expect = 2e-09
Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 12/81 (14%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKM--------- 51
G + C A W + L F N+ S+
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 52 -EIDPATQKDAGYYECVADNP 71
I +D+ Y C ++
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQ 90
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 53.6 bits (128), Expect = 7e-11
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 24/99 (24%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-------------- 48
G K+ G P P + W K + +
Sbjct: 33 GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 92
Query: 49 ----------SKMEIDPATQKDAGYYECVADNPFAIDRR 77
S ++ A ++D G Y NP D+
Sbjct: 93 RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 131
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 51.9 bits (125), Expect = 9e-11
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
LG++I C WTK+ + + +V K+ I A +D
Sbjct: 20 NLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVV-----QKGRIHKLVIANALTED 72
Query: 61 AGYYECVADN 70
G Y D
Sbjct: 73 EGDYVFAPDA 82
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 52.0 bits (125), Expect = 9e-11
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ F P+ + W K+ E+ + + + I+ D
Sbjct: 23 GGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNCQMTDDS 76
Query: 63 YYECVADN 70
Y A +
Sbjct: 77 EYYVTAGD 84
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 52.4 bits (125), Expect = 1e-10
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 3 GRKITFFCMAEGFPRP--HITWTKDDIEL---TFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
G ++F C A W D+ L Y + + + +
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 58 QKDAGYYECVADNPF 72
G Y+CV N F
Sbjct: 85 FTSEGXYQCVISNHF 99
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 54.8 bits (131), Expect = 1e-10
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 15/70 (21%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
+ G+ +T + P + + G T+ + +D
Sbjct: 109 LQGQSLTLTLESPPGSSPSVQCRSPRGKN-----------IQGGKTLS----VSQLELQD 153
Query: 61 AGYYECVADN 70
+G + C
Sbjct: 154 SGTWTCTVLQ 163
Score = 49.8 bits (118), Expect = 6e-09
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 16/83 (19%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---------- 52
G + C A W + Q G + + + +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGN--QGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 53 ----IDPATQKDAGYYECVADNP 71
I +D+ Y C ++
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQ 89
Score = 40.2 bits (93), Expect = 2e-05
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 18/70 (25%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK--SKMEIDPATQKD 60
+ C G P + + L N K + + +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLS----------------LKLENKEAKVSKREKAVWVLNPE 339
Query: 61 AGYYECVADN 70
AG ++C+ +
Sbjct: 340 AGMWQCLLSD 349
Score = 37.1 bits (85), Expect = 2e-04
Identities = 6/69 (8%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNN-TIKSKMEIDPATQKDAGY 63
++ + + IT+ + E++ + Q + +G + + +G
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 64 YECVADNPF 72
+
Sbjct: 272 LTLALEAKT 280
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 51.6 bits (124), Expect = 1e-10
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F E + W + +++ + + G + + + D G
Sbjct: 23 GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE--GT---RHTLTVREVGPADQG 76
Query: 63 YYECVADN 70
Y +A +
Sbjct: 77 SYAVIAGS 84
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 51.5 bits (123), Expect = 2e-10
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 3 GRKITFFCMAEGFP---RPHITWTKD---DIELTFHKYFQVHEWFLGNNTI-KSKMEIDP 55
G ITF G P + W K D+ ++ Q+H+ + + + ++ I
Sbjct: 19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78
Query: 56 ATQKDAGYYECVADNPFAIDRRGFR 80
A G Y C D F
Sbjct: 79 AQPAFTGSYRCEVSTKDKFDCSNFN 103
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 51.7 bits (124), Expect = 2e-10
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
++ C P + WTKD E+ + + ++ + +D+G
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSG 81
Query: 63 YYECVADN 70
Y C D+
Sbjct: 82 EYLCEIDD 89
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.7 bits (126), Expect = 2e-10
Identities = 14/72 (19%), Positives = 17/72 (23%), Gaps = 14/72 (19%)
Query: 2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
LG KI C W K + L + K E +
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLK------------EDALPGQKTEFKVDSDD 59
Query: 60 DAGYYECVADNP 71
G Y CV
Sbjct: 60 QWGEYSCVFLPE 71
Score = 49.3 bits (117), Expect = 4e-09
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 1 MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPAT- 57
G C +E P W K +F+ ++ +S++ I+
Sbjct: 96 NEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNM 155
Query: 58 QKDAGYYECVADNPF 72
+ D G Y C +
Sbjct: 156 EADPGQYRCNGTSSK 170
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 53.3 bits (127), Expect = 2e-10
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 1 MLGRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDP 55
+G K+ C A W + K + +K S + ID
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 56 ATQKDAGYYECVADNPF 72
T+ D G Y C A +
Sbjct: 178 VTRSDQGLYTCAASSGL 194
Score = 35.5 bits (81), Expect = 6e-04
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ + C+ +++ E F W K I AG
Sbjct: 24 NKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW-----DSKKGFTIPSYMISYAG 77
Query: 63 YYECVADN 70
C A
Sbjct: 78 MVFCEAKI 85
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 53.7 bits (128), Expect = 2e-10
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 2 LGRKITFFCMAEGFPRP----HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
+G C A I W + + ++ + + T
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301
Query: 58 QKDAGY-YECVADNPF 72
++ G Y C N +
Sbjct: 302 EEYIGNTYTCRGHNYY 317
Score = 52.1 bits (124), Expect = 8e-10
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 3 GRKITFFC-MAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
I +C + +ITW K++ EL + L I +D
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNL---------IIHNPELED 193
Query: 61 AGYYECVADNP 71
+G Y+C
Sbjct: 194 SGRYDCYVHYD 204
Score = 35.2 bits (80), Expect = 8e-04
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 8/75 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE---WFLGNNTIKSKMEIDPAT 57
LG + C + D + + K + + N + I T
Sbjct: 42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLW----IANYT 97
Query: 58 QKDAG-YYECVADNP 71
D+ Y C
Sbjct: 98 SNDSHRRYLCTVTTK 112
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.8 bits (122), Expect = 3e-10
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G T C+ P + W + L + + + ++ + +D+G
Sbjct: 23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSG 76
Query: 63 YYECVADN 70
Y C +
Sbjct: 77 RYSCSFGD 84
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 53.1 bits (127), Expect = 3e-10
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEW-FLGNNTIKSKMEIDPATQKDA 61
+ C AEG+P+ + WT D ++ K + + S + I+
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TN 187
Query: 62 GYYECVADNP 71
+ C
Sbjct: 188 EIFYCTFRRL 197
Score = 31.9 bits (72), Expect = 0.013
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 18/89 (20%)
Query: 1 MLGRKITFFCMAEGFPRP-----HITWTKDDIELTFHKYFQVHEW-----------FLGN 44
G +T C + + W +D + + + L +
Sbjct: 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD 73
Query: 45 NTIKSK--MEIDPATQKDAGYYECVADNP 71
++I +DAG Y C+
Sbjct: 74 QLSLGNAALQITDVKLQDAGVYRCMISYG 102
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 53.0 bits (126), Expect = 4e-10
Identities = 15/85 (17%), Positives = 21/85 (24%), Gaps = 16/85 (18%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKME------ 52
G IT C ++TW T ++ G S++
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210
Query: 53 ------IDPATQKDAGYYECVADNP 71
I A DAG C
Sbjct: 211 GARNLVIRAAKITDAGRVWCELATG 235
Score = 43.0 bits (100), Expect = 1e-06
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 27/105 (25%)
Query: 2 LGRKITFFC---MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME------ 52
G + C +A P I+W K K F+ + + G + +
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75
Query: 53 ------------------IDPATQKDAGYYECVADNPFAIDRRGF 79
+ +D G Y C G
Sbjct: 76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL 120
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 50.4 bits (121), Expect = 4e-10
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 6/68 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G F P H W L ++ E + K + + G
Sbjct: 20 GETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNCQLGMTG 73
Query: 63 YYECVADN 70
A N
Sbjct: 74 EVSFQAAN 81
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 52.4 bits (125), Expect = 4e-10
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+T C++ +I W + L + + + N+ + IDP ++DAG
Sbjct: 125 LDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ---NNSI----LRIDPIKREDAG 176
Query: 63 YYECVADNP 71
Y+C NP
Sbjct: 177 EYQCEISNP 185
Score = 42.3 bits (99), Expect = 2e-06
Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 17/83 (20%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---------- 52
+ W K + T ++ + +N +
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGN---TTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 53 ----IDPATQKDAGYYECVADNP 71
T KD G Y +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDE 93
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 50.5 bits (121), Expect = 5e-10
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G T C + W K L + + + + + +++I + DAG
Sbjct: 23 GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAG 75
Query: 63 YYECVADN 70
Y C+
Sbjct: 76 EYSCMCGQ 83
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 50.0 bits (120), Expect = 6e-10
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G ++ C ++ W K+ E+ + G K + I+ AT+ D
Sbjct: 20 YCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK---KHILIIEGATKAD 75
Query: 61 AGYYECVADN 70
A Y +
Sbjct: 76 AAEYSVMTTG 85
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 52.2 bits (124), Expect = 9e-10
Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 18/70 (25%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ T C A G P P + KD E T+ G
Sbjct: 385 NSQQTPMCQAWGNPLPELKCLKD------------------GTFPLPIGESVTVTRDLEG 426
Query: 63 YYECVADNPF 72
Y C A +
Sbjct: 427 TYLCRARSTQ 436
Score = 40.6 bits (94), Expect = 1e-05
Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 17/71 (23%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++T C A + + ++++ + + +
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGP-----------------RAQLLLKATPEDNGR 340
Query: 63 YYECVADNPFA 73
+ C A A
Sbjct: 341 SFSCSATLEVA 351
Score = 35.6 bits (81), Expect = 6e-04
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 3 GRKITFFCMAEG-FPRPHIT--WTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G+ +T C EG PR ++T + + EL T +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE----PAEVTTT----VLVRRDH 152
Query: 60 DAGYYECVADN 70
+ C +
Sbjct: 153 HGANFSCRTEL 163
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.9 bits (117), Expect = 2e-09
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G C + W K L + + + + +++I +D
Sbjct: 32 TEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAED 84
Query: 61 AGYYECVADN 70
AG Y C+
Sbjct: 85 AGEYLCMCGK 94
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 48.9 bits (117), Expect = 2e-09
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
F C E P +TW K +EL Q + + ++ I + D+
Sbjct: 23 KGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSD 76
Query: 63 YYECVA 68
Y C
Sbjct: 77 TYTCDI 82
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 51.0 bits (121), Expect = 3e-09
Identities = 11/67 (16%), Positives = 15/67 (22%), Gaps = 9/67 (13%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
+P ITW ++ L A + G Y C
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNL---------SFLIALISNNGNYTC 194
Query: 67 VADNPFA 73
V P
Sbjct: 195 VVTYPEN 201
Score = 46.4 bits (109), Expect = 9e-08
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 10/87 (11%)
Query: 1 MLGRKITFFCMA----EGFPRPHITWTKDDIELTFHKYFQVHE-----WFLGNNTIKSKM 51
G ++ C R + WT D + + T +
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298
Query: 52 EIDPATQKDAGY-YECVADNPFAIDRR 77
I T +D Y C A + +
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAK 325
Score = 43.7 bits (102), Expect = 7e-07
Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 8/73 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKD----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
+ F + W D+E + + + + P
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL----WFRPTLL 88
Query: 59 KDAGYYECVADNP 71
D G Y C+ N
Sbjct: 89 NDTGNYTCMLRNT 101
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 49.0 bits (116), Expect = 3e-09
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPAT 57
G K+ C A W + K + +K S + ID T
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 58 QKDAGYYECVADNPF 72
+ D G Y C A +
Sbjct: 83 RSDQGLYTCAASSGL 97
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 50.0 bits (119), Expect = 3e-09
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
++ C A G+P ++W + + + S + + P +
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLY----QVTSVLRLKPQ---PSR 170
Query: 63 YYECVADNP 71
+ C+ N
Sbjct: 171 NFSCMFWNA 179
Score = 40.8 bits (95), Expect = 8e-06
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE--WFLGNNTIKSK--MEIDPA 56
+G ++ C + + + ++ + E L K I
Sbjct: 15 DVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 57 TQKDAGYYECVADN 70
+D+G Y C+
Sbjct: 75 QVRDSGQYRCLVIC 88
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 48.1 bits (115), Expect = 4e-09
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G KI + W K+ E+ KY G K + I + D
Sbjct: 31 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESI---GA---KRTLTISQCSLAD 83
Query: 61 AGYYECVADN 70
Y+CV
Sbjct: 84 DAAYQCVVGG 93
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 49.5 bits (118), Expect = 4e-09
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 16/69 (23%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
T C P + +D L + ++ T +
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHL----------------KLSQRVITHKWTTSLSA 158
Query: 63 YYECVADNP 71
++C A N
Sbjct: 159 KFKCTAGNK 167
Score = 46.4 bits (110), Expect = 5e-08
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 1 MLGRKITFFC--MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEID 54
LG+ I I W K + ++ + E F +T K ++I
Sbjct: 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71
Query: 55 PATQKDAGYYECVADNP 71
D Y+ +
Sbjct: 72 HLKTDDQDIYKVSIYDT 88
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 48.8 bits (116), Expect = 1e-08
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 18/74 (24%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-----SKMEIDPAT 57
G +T C + + L F +++G+ T++ S+ +I A
Sbjct: 185 GNLVTLSCETKLLLQRPGLQ------LYF-------SFYMGSKTLRGRNTSSEYQILTAR 231
Query: 58 QKDAGYYECVADNP 71
++D+G Y C A
Sbjct: 232 REDSGLYWCEAATE 245
Score = 44.5 bits (105), Expect = 4e-07
Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 16/69 (23%)
Query: 3 GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+T C P W + T I A+ D+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTAT---------------QTSTPSYRITSASVNDS 60
Query: 62 GYYECVADN 70
G Y C
Sbjct: 61 GEYRCQRGL 69
Score = 44.1 bits (104), Expect = 5e-07
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 14/70 (20%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G + C A ++ + ++ F + S + I
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW-------------NSNLTILKTNISHN 143
Query: 62 GYYECVADNP 71
G Y C
Sbjct: 144 GTYHCSGMGK 153
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 48.7 bits (116), Expect = 1e-08
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
LG +T C + + + + E + + N + +D
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSN-EQVLSQGSNGSV-SVRNGDL----FFKKVQVED 312
Query: 61 AGYYECVADNP 71
G Y C A
Sbjct: 313 GGVYTCYAMGE 323
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 47.6 bits (112), Expect = 3e-08
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C P I W +D + + + + ++K E++ +G
Sbjct: 128 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSG 180
Query: 63 YYECVADNPFAIDRRGF 79
YY C D +
Sbjct: 181 YYVCYPRGSKPEDANFY 197
Score = 44.9 bits (105), Expect = 2e-07
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 15/68 (22%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
+ C +ITW KD + F K K + + G
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGF------------LTEDKKKWNLGSNAKDPRG 62
Query: 63 YYECVADN 70
Y+C
Sbjct: 63 MYQCKGSQ 70
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 47.1 bits (111), Expect = 4e-08
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+G ++ C G P +W + I+ + S + ++P + +
Sbjct: 15 IGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGT-------TSTLTMNPVSFGNE 66
Query: 62 GYYECVADN 70
Y C A
Sbjct: 67 HSYLCTATC 75
Score = 47.1 bits (111), Expect = 4e-08
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 1 MLGRKITFFCMAEG---FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
G+ IT C F R I K D + ++ + + ++ P
Sbjct: 104 EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS-LEVTFTPVI 162
Query: 58 QKDAGYYECVADNP 71
+ C A
Sbjct: 163 EDIGKVLVCRAKLH 176
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 46.4 bits (110), Expect = 6e-08
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G+ + C + + + KD L + N + I AT +D+
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----------YEN---HNISITNATVEDS 146
Query: 62 GYYECVADNP 71
G Y C
Sbjct: 147 GTYYCTGKVW 156
Score = 43.7 bits (103), Expect = 5e-07
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 16/71 (22%)
Query: 1 MLGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G +T C F W + S + I A +
Sbjct: 17 FKGENVTLTCNGNNFFEVSSTKWFHNGSLSE---------------ETNSSLNIVNAKFE 61
Query: 60 DAGYYECVADN 70
D+G Y+C
Sbjct: 62 DSGEYKCQHQQ 72
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 46.3 bits (109), Expect = 9e-08
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 3 GRKITFFCMAEGF-PRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEI 53
+ C + P P ITW ++ L + + G ++ S + +
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193
Query: 54 DPATQKDAGYYECVADNPFAIDRRG 78
+ C A R G
Sbjct: 194 RLRKDDRDASFHCAAHYSLPEGRHG 218
Score = 31.3 bits (70), Expect = 0.019
Identities = 12/98 (12%), Positives = 18/98 (18%), Gaps = 17/98 (17%)
Query: 1 MLGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME------- 52
M G+ + C G + + W D +
Sbjct: 13 MRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQ 72
Query: 53 --------IDPATQKDAGYYECVADNPFAIDRRGFRTD 82
+ A D Y CV A
Sbjct: 73 LDSQGRLVLAEAQVGDERDYVCVVRA-GAAGTAEATAR 109
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 46.4 bits (110), Expect = 1e-07
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ F+C P +TW KDD EL + N + I+ D G
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR-----YNGNDYGLTINRVKGDDKG 551
Query: 63 YYECVADNPF 72
Y A N +
Sbjct: 552 EYTVRAKNSY 561
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 45.8 bits (108), Expect = 1e-07
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 3 GRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C++ G P ITW D + G T+ S + P++Q D
Sbjct: 131 EPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFL--SGTVTVTSLWILVPSSQVDG 188
Query: 62 GYYECVADNP 71
C ++
Sbjct: 189 KQVTCKVEHE 198
Score = 30.8 bits (69), Expect = 0.030
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 18/84 (21%)
Query: 1 MLGRKITFFCMAEGFPRP-----HITWTKDDIELTFHKYFQVHE-------------WFL 42
LG +T C + +TW + + + Q L
Sbjct: 12 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 71
Query: 43 GNNTIKSKMEIDPATQKDAGYYEC 66
G + + + +D G Y C
Sbjct: 72 GAELRDASLRMFGLRVEDEGSYTC 95
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.0 bits (103), Expect = 2e-07
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 3 GRKITFFCMAEGFP---RPHITWTKD---DIELTFHKYFQVHEWFLGNNTIKS-KMEIDP 55
G+ G +P I W K ++ F E + + + ++ I
Sbjct: 27 GKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGK 86
Query: 56 ATQKDAGYYECVADNPFAIDRRGF 79
D GYY D GF
Sbjct: 87 VVLGDRGYYRLEVKAKDTCDSCGF 110
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 43.3 bits (102), Expect = 3e-07
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 22/79 (27%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKY-------FQV-----HEWFLGNNTI 47
+ G C + + W+ + L F ++ HE +
Sbjct: 19 VEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI----- 73
Query: 48 KSKMEIDPATQKDAGYYEC 66
+ + D G Y C
Sbjct: 74 ----SVSDVSLSDEGQYTC 88
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 44.8 bits (105), Expect = 4e-07
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G+ TF C A G I++ ++ + + T++D
Sbjct: 177 NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI--ASFNVVNTTKRD 234
Query: 61 AGYYECVADNPF 72
AG Y C+
Sbjct: 235 AGKYRCMIRTEG 246
Score = 30.9 bits (69), Expect = 0.031
Identities = 5/65 (7%), Positives = 10/65 (15%), Gaps = 14/65 (21%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
+ + P + W W + I
Sbjct: 94 LNVYVKVNNGPLGNPIWNISG--------DPTRTWNRAE------LAISTFWPNFYQVIF 139
Query: 66 CVADN 70
V +
Sbjct: 140 EVITS 144
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 44.0 bits (104), Expect = 4e-07
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 14/71 (19%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G I C + P +T+ ++ F + I A +
Sbjct: 100 GETIMLRCHSWKDKPLVKVTFFQNGKSQKFS----------HLD---PTFSIPQANHSHS 146
Query: 62 GYYECVADNPF 72
G Y C + +
Sbjct: 147 GDYHCTGNIGY 157
Score = 43.7 bits (103), Expect = 6e-07
Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 16/69 (23%)
Query: 3 GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+T C P I W + + T A D+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIP---------------THTQPSYRFKANNNDS 63
Query: 62 GYYECVADN 70
G Y C
Sbjct: 64 GEYTCQTGQ 72
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 43.8 bits (102), Expect = 7e-07
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
F C + + ++ + S + I ++DAG
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-RILLNPQDKDGSFS-VVITGLRKEDAG 303
Query: 63 YYECVADNPF 72
Y C A +
Sbjct: 304 RYLCGAHSDG 313
Score = 40.4 bits (93), Expect = 1e-05
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 1 MLGRKITFFCMAEGFPRPHIT-WTKDDIELTFHKYFQV------HEWFLGNNTIKSK--- 50
+ G + C I W + V + G ++ +
Sbjct: 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN 403
Query: 51 ----MEIDPATQKDAGYYECVADNP 71
+ ++ T +DAG+Y C+ +
Sbjct: 404 GTFTVILNQLTSRDAGFYWCLTNGD 428
Score = 39.6 bits (91), Expect = 2e-05
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYY 64
F C + + W + + + F N+ + ++ T+ D G+Y
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 524
Query: 65 ECVADNPFAIDR 76
C
Sbjct: 525 WCGVKQGHFYGE 536
Score = 33.4 bits (75), Expect = 0.004
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 4 RKITFFCMAEGFPRPHITW----TKDDIELTFHKYFQVHEWFLGNNTIKSK--------M 51
R +T C + L V+ + G + + +
Sbjct: 128 RTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSV 187
Query: 52 EIDPATQKDAGYYECVADN 70
I+ DAG Y C A +
Sbjct: 188 VINQLRLSDAGQYLCQAGD 206
Score = 32.7 bits (73), Expect = 0.007
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 14/83 (16%)
Query: 3 GRKITFFCMAE---GFPRPHITWTKDDIELTFHKYFQ----VHEWFLGNNTIKSK----- 50
G ++ C W + V + G + +
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 51 --MEIDPATQKDAGYYECVADNP 71
+ I +Q D+G Y+C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGIN 97
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 41.8 bits (98), Expect = 2e-06
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 16/71 (22%)
Query: 1 MLGRKITFFCMAEGFPRPHIT-WTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
+ +T C P + T W ++ ++ + S ID AT
Sbjct: 20 LEKDSVTLKCQGAYSPEDNSTQWFHNESLIS---------------SQASSYFIDAATVN 64
Query: 60 DAGYYECVADN 70
D+G Y C +
Sbjct: 65 DSGEYRCQTNL 75
Score = 41.4 bits (97), Expect = 4e-06
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
I C + + +T+ ++ + + + S I AT KD+
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------------NSDFHIPKATLKDS 149
Query: 62 GYYECVADNP 71
G Y C
Sbjct: 150 GSYFCRGLVG 159
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 41.3 bits (96), Expect = 3e-06
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 22/81 (27%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKY-------FQV-----HEWFLGNNTI 47
+ G + C + + W+ + L F + Q+ HE +
Sbjct: 51 VAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSI----- 105
Query: 48 KSKMEIDPATQKDAGYYECVA 68
I D G Y C
Sbjct: 106 ----SISNVALADEGEYTCSI 122
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.1 bits (96), Expect = 3e-06
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 3 GRKITFFCMAEGFPRPHITWTK--------DDIELTFHKYFQVHEWFLGNNTIKSKMEID 54
G+ +T C+ + W ++ + + +Q+ +I +
Sbjct: 16 GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSIT----VP 71
Query: 55 PATQKDAGYYECVA 68
T +D G Y+C+
Sbjct: 72 NVTLQDEGVYKCLH 85
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 41.4 bits (97), Expect = 4e-06
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 14/70 (20%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
I C + +T+ ++ + + S I AT KD+
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH-------------NSDFYIPKATLKDS 149
Query: 62 GYYECVADNP 71
G Y C
Sbjct: 150 GSYFCRGLVG 159
Score = 40.6 bits (95), Expect = 9e-06
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 20/73 (27%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---IDPAT 57
+ +T C P T WF + I S+ ID AT
Sbjct: 20 LEKDSVTLKCQGAYSPEDQSTQ-----------------WFHNESLISSQASSYFIDAAT 62
Query: 58 QKDAGYYECVADN 70
D+G Y C
Sbjct: 63 VDDSGEYRCQTQL 75
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 41.5 bits (97), Expect = 4e-06
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 3 GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
C G FP PH++W ++ EL + + SK++ + T
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS- 179
Query: 62 GYYECVADNP 71
+ C+
Sbjct: 180 --FMCLIKYG 187
Score = 31.9 bits (72), Expect = 0.011
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 10/81 (12%)
Query: 1 MLGRKITFFCM----AEGFPRPHITWTKDDIELTFHKYFQVHEW--FLGNNTIKSK---- 50
+ T C E + I W K+ + ++ W +
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66
Query: 51 MEIDPATQKDAGYYECVADNP 71
+ I D G YECV
Sbjct: 67 IVILALRPSDEGTYECVVLKY 87
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 41.4 bits (96), Expect = 6e-06
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 19/73 (26%)
Query: 3 GRKITFFCMAEG-FPRPH---ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
G T G P P TWTKDD NNT + + + AT
Sbjct: 17 GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-------------NNT--ATLTVADATS 61
Query: 59 KDAGYYECVADNP 71
++AG Y+ +
Sbjct: 62 ENAGSYKVTVQDT 74
Score = 36.7 bits (84), Expect = 2e-04
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 2 LGRKITFFCM--------AEGFPRPHITWT----KDDIELTFHKYFQVHEWFLGNN-TIK 48
LG +I+ + + G P I + ++ +V E G + T
Sbjct: 198 LGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPD 257
Query: 49 SKMEIDPATQKDAGYYECVADNPFAIDRR 77
+ + AT D + CVA I+
Sbjct: 258 GHLFKESATYDDTAKFWCVAKLYQQIEDE 286
Score = 32.5 bits (73), Expect = 0.007
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 38 HEWFLGNNTIKS--KMEIDPATQKDAGYYECVADNPF 72
+ W G + I + + I T G Y
Sbjct: 132 YSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGES 168
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 40.2 bits (93), Expect = 1e-05
Identities = 12/98 (12%), Positives = 20/98 (20%), Gaps = 22/98 (22%)
Query: 2 LGRKITFFCMAEGFPRPH---ITWTKDDIELT------------FHKYFQVHEWFLGNNT 46
+G C + + W T FQ F
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191
Query: 47 IKSKME-------IDPATQKDAGYYECVADNPFAIDRR 77
+ + + + D G Y C R+
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK 229
Score = 38.3 bits (88), Expect = 7e-05
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 18/89 (20%)
Query: 1 MLGRKITFFCM---AEGFPRPHITWTKDD-----IELTFHKY---------FQVHEWFLG 43
+G + C+ E + W E Y FQ +G
Sbjct: 18 HVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG 77
Query: 44 NNTIKS-KMEIDPATQKDAGYYECVADNP 71
+ + + + D G Y C
Sbjct: 78 DTFHNDGSLLLQDVQKADEGIYTCEIRLK 106
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 39.2 bits (91), Expect = 2e-05
Identities = 6/66 (9%), Positives = 12/66 (18%), Gaps = 16/66 (24%)
Query: 6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
T C + + L + + ++
Sbjct: 113 ATLTCEVLEGTDVELKLYQGKEHL----------------RSLRQKTMSYQWTNLRAPFK 156
Query: 66 CVADNP 71
C A N
Sbjct: 157 CKAVNR 162
Score = 38.0 bits (88), Expect = 6e-05
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 12/79 (15%)
Query: 1 MLGRKITFFC--MAEGFPRPHITWTKDDIELTFHK------YFQVHEWFLGNNTIKSKME 52
LG I + W + + K L N ++
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD----LK 64
Query: 53 IDPATQKDAGYYECVADNP 71
I T+ D+G Y +
Sbjct: 65 IKNLTRDDSGTYNVTVYST 83
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 39.1 bits (90), Expect = 3e-05
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 9/70 (12%)
Query: 2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G +T C E + W H + ++ + D
Sbjct: 20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA--------GMGRRLLLRSVQLHD 71
Query: 61 AGYYECVADN 70
+G Y C
Sbjct: 72 SGNYSCYRAG 81
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 38.3 bits (88), Expect = 4e-05
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 3 GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G C + RPH+TW K + + W N + +P D
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 85
Query: 62 GYYECVADNPFAI 74
G Y C A+ +
Sbjct: 86 GSYRCSANFQSNL 98
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 38.4 bits (89), Expect = 5e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSK---MEIDP 55
++ +TF P + W K ++ + F+ F + + + I
Sbjct: 8 VVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66
Query: 56 ATQKDAGYYECVADN 70
T D YE + N
Sbjct: 67 LTSSDEDEYEMESPN 81
Score = 35.7 bits (82), Expect = 4e-04
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 13 EGFPRPHITWTKDDIELTFHKYFQVHE-------WFLGNNTIKS--KMEIDPATQKDAGY 63
E +P I W + LT V E + G ++S + +
Sbjct: 94 EMVSKPMIYWECSNATLTCE----VLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAP 149
Query: 64 YECVADNP 71
++C A N
Sbjct: 150 FKCKAVNR 157
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.8 bits (87), Expect = 9e-05
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 3 GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
I C + G +P+P I W+ + E V +G + + + +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM---RGSSG 189
Query: 62 GYYECVADNP 71
C +
Sbjct: 190 EGVSCTIRSS 199
Score = 27.0 bits (59), Expect = 0.67
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 18/89 (20%)
Query: 1 MLGRKITFFC---MAEGFPRPHITWTKDDIELTFHKYFQVHE-------------WFLGN 44
M+G C + W + + Y E L +
Sbjct: 17 MVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD 76
Query: 45 NTIKSK--MEIDPATQKDAGYYECVADNP 71
K + I T D+G Y C +
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCYFQDG 105
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.2 bits (85), Expect = 1e-04
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 16 PRPHITWTK---DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72
RP++TW K W + + P D G Y C +
Sbjct: 43 HRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 102
Query: 73 AI 74
+
Sbjct: 103 QV 104
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 36.7 bits (84), Expect = 1e-04
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C P I W +D + + + + ++K E++ +G
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSG 73
Query: 63 YYECVADN 70
YY C
Sbjct: 74 YYVCYPRG 81
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 37.2 bits (86), Expect = 1e-04
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 16 PRPHITWTKDDIELT--FHKYFQVH-EWFLGNNTIKS--KMEIDPATQKDAGYYECVADN 70
+P I W + LT + V + + G ++S + + ++C A N
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVN 166
Query: 71 P 71
Sbjct: 167 R 167
Score = 30.6 bits (69), Expect = 0.027
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
+ + + + + F F+ N + I +++D G Y +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGA---LRIYNVSKEDRGDYYMRMLH 90
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 37.1 bits (85), Expect = 1e-04
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 15/73 (20%)
Query: 3 GRKITFFCM----AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
GR C E P +WT + + T S++ + P +
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL-----------DPETTRSSELTLTPRPE 186
Query: 59 KDAGYYECVADNP 71
C
Sbjct: 187 DHGTNLTCQMKRQ 199
Score = 25.6 bits (55), Expect = 2.4
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 19 HITWTKDDIE-------LTFHKYFQVHE------WFLGNNTIKSK-MEIDPATQKDAGYY 64
++ W +D T + +V LG+ K+ + I A +D G Y
Sbjct: 38 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 97
Query: 65 ECVADN 70
+
Sbjct: 98 FFRVER 103
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 36.0 bits (82), Expect = 3e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 17/69 (24%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ-KDA 61
G + C + ++ W K+ EL + + + ++ +D+
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELP------------QKH--DKHLVLQDFSEVEDS 57
Query: 62 GYYECVADN 70
GYY C
Sbjct: 58 GYYVCYTPA 66
Score = 34.5 bits (78), Expect = 0.001
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 12/57 (21%)
Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
G I W KD ++ N K+ + + G Y+C
Sbjct: 130 GLTDKTIKWLKDGSIIS------------PLNATKNTWNLGNNAKDPRGTYQCQGAK 174
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 36.1 bits (83), Expect = 5e-04
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 13/88 (14%)
Query: 1 MLGRKITFFCM-------AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEI 53
L T C+ +I W + + +Y + N T S
Sbjct: 16 QLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII------NRTASSVTFT 69
Query: 54 DPATQKDAGYYECVADNPFAIDRRGFRT 81
D A+ + + G
Sbjct: 70 DIASLNIQLTCNILTFGQLEQNVYGITI 97
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 35.3 bits (81), Expect = 6e-04
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 16/70 (22%)
Query: 3 GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
++ C E W L+ N T+ I
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQ----------PNLTVSWDPRIS-----SE 168
Query: 62 GYYECVADNP 71
Y C+A+N
Sbjct: 169 QDYTCIAENA 178
Score = 33.8 bits (77), Expect = 0.002
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 1 MLGRKITFFC-MAEGFPRPHITWTKDDIELTF--------------HKYFQVHEWFLGNN 45
+LG +T G ITW ++ L F + F +
Sbjct: 11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 46 TIKSKMEIDPATQKDAGYYECVADN 70
+++ + +D G Y
Sbjct: 71 SLQ----LSNLKMEDTGSYRAQIST 91
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.5 bits (79), Expect = 7e-04
Identities = 13/82 (15%), Positives = 18/82 (21%), Gaps = 16/82 (19%)
Query: 2 LGRKITFFCMAEGFPRP--HITWTKDDIEL-TFHKYFQVHEW--------FLGNNTIKSK 50
G I C + W + D L + H +
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLT-- 74
Query: 51 MEIDPATQKDAGYYEC-VADNP 71
+ T D G Y C P
Sbjct: 75 --LQSLTVNDTGEYFCIYHTYP 94
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 34.5 bits (79), Expect = 0.001
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 1 MLGRKITFFCMAEGF-PRPHI--TWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
+LG + C G + TWT + + G ++ S +
Sbjct: 260 LLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERD--LCGCYSVSSVLPGCAEP 317
Query: 58 QKDAGYYECVADNP 71
+ C A P
Sbjct: 318 WNHGKTFTCTAAYP 331
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 33.7 bits (77), Expect = 0.003
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
L + C A + K+ Y ++ N + ID
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNS------TYREIGRRLKFWNETDPEFVIDHMDANK 75
Query: 61 AGYYECVADNP 71
AG Y+C
Sbjct: 76 AGRYQCQYRIG 86
Score = 32.5 bits (74), Expect = 0.006
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
M G I+ C + P + K+ + L H+ + F + P
Sbjct: 118 MPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFS----------LGPVDLN 167
Query: 60 DAGYYECVA 68
+G Y C
Sbjct: 168 VSGIYRCYG 176
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 33.0 bits (74), Expect = 0.005
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
LG C + W D L + ++T +S + + A+
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLDTSL----------GAVQSDTGRSVLTVRNASLSA 70
Query: 61 AGYYECVADNP 71
AG CV
Sbjct: 71 AGTRVCVGSCG 81
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 31.8 bits (72), Expect = 0.008
Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 14/81 (17%)
Query: 1 MLGRKITFFC-MAEGFPRPHITWTK----------DDIELTFHKYFQVHEWFLGNNTIKS 49
+ G +T + +TW F F+ +
Sbjct: 17 VSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG--- 73
Query: 50 KMEIDPATQKDAGYYECVADN 70
+ I ++D Y
Sbjct: 74 ALYISKVQKEDNSTYIMRVLK 94
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 32.2 bits (73), Expect = 0.010
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 1 MLGRKITFFCMAEGF-PRP---HITWTKDDIELTFHKYFQVHEWFLGNNT--IKSKMEID 54
++ C+ +W D++E+ H N+T + S + I
Sbjct: 243 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEV--HTAQTQPREEQFNSTFRVVSALPIM 300
Query: 55 PATQKDAGYYECVADNP 71
+ ++C ++
Sbjct: 301 HQDWLNGKEFKCRVNSA 317
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 32.1 bits (73), Expect = 0.011
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +T +C K++ + + + K++ I T+ A
Sbjct: 18 WGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKN------KARFSIPSMTEDYA 70
Query: 62 GYYECVADNP 71
G Y C +P
Sbjct: 71 GRYRCYYRSP 80
Score = 28.3 bits (63), Expect = 0.23
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G+ +T C + P K+ G +++ + P T G
Sbjct: 114 GKSVTLLCQSR-SPMDTFLLCKER----AAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGG 168
Query: 63 YYEC 66
Y C
Sbjct: 169 TYRC 172
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 31.8 bits (72), Expect = 0.012
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G ++ C ++ H K+ I K + + K+ I P AG
Sbjct: 133 GERVILQCWSDIMF-EHFFLHKEGI----SKDPSRLVGQIHDGVSKANFSIGPMMLALAG 187
Query: 63 YYECVADNP 71
Y C
Sbjct: 188 TYRCYGSVT 196
Score = 29.8 bits (67), Expect = 0.070
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +T C + K+D ++H + + P T A
Sbjct: 37 RGGHVTLRCHYRH-RFNNFMLYKED---------RIHIPIFHGRIFQESFNMSPVTTAHA 86
Query: 62 GYYEC 66
G Y C
Sbjct: 87 GNYTC 91
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 31.4 bits (71), Expect = 0.016
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 1 MLGRKITFFCMAEGF-PRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
+ +++ C+ +GF P + W + +K G+ + SK+ +D +
Sbjct: 255 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW 314
Query: 59 KDAGYYECVADNP 71
+ + C +
Sbjct: 315 QQGNVFSCSVMHE 327
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer
cell, HLA, major histocompatibility complex class I
(MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 257
Score = 29.9 bits (67), Expect = 0.054
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ C ++ H ++ K + K+ I P Q A
Sbjct: 20 SEETVILQCWSDV-RFQHFLLHREGK----FKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74
Query: 62 GYYEC 66
G Y C
Sbjct: 75 GTYRC 79
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 29.5 bits (66), Expect = 0.085
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+++T C + + F V K K I + A
Sbjct: 20 KEKQVTICCQGN-YGAVEYQLHFEG------SLFAVDRPKPPERINKVKFYIPDMNSRMA 72
Query: 62 GYYECVADNP 71
G Y C+
Sbjct: 73 GQYSCIYRVG 82
Score = 25.3 bits (55), Expect = 2.4
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G K+TF+C + K+ + + + P T G
Sbjct: 116 GEKVTFYCRLDTAT-SMFLLLKEG---RSSHVQRGYGKVQAEFPL------GPVTTAHRG 165
Query: 63 YYECVA 68
Y C
Sbjct: 166 TYRCFG 171
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 29.3 bits (64), Expect = 0.098
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 10 CMAEGFPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67
C + + W + L KY + L I ++ D+G Y+C+
Sbjct: 555 CSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNL---------LIFNLSEGDSGVYQCL 604
Query: 68 A 68
+
Sbjct: 605 S 605
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 28.6 bits (64), Expect = 0.16
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 7/70 (10%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+++T C + + + K K I + A
Sbjct: 17 KEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERIN------KVKFYIPDMNSRMA 69
Query: 62 GYYECVADNP 71
G Y C+
Sbjct: 70 GQYSCIYRVG 79
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.3 bits (63), Expect = 0.19
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
+ C ++ H ++ + + K+ I TQ A
Sbjct: 21 SEETVILQCWSD-VMFEHFLLHREGM----FNDTLRLIGEHHDGVSKANFSISRMTQDLA 75
Query: 62 GYYEC 66
G Y C
Sbjct: 76 GTYRC 80
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.3 bits (63), Expect = 0.21
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPATQK 59
G +T C ++ K+ ++ Q + ++ + P +
Sbjct: 113 NSGGNVTLQCDSQ-VAFDGFILCKEGE----DEHPQCLNSQPHARGSSRAIFSVGPVSPS 167
Query: 60 DAGYYECVA 68
+Y C A
Sbjct: 168 RRWWYRCYA 176
Score = 27.1 bits (60), Expect = 0.50
Identities = 9/73 (12%), Positives = 17/73 (23%), Gaps = 11/73 (15%)
Query: 1 MLGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
G +T C + ++ + K + I T
Sbjct: 17 TQGSPVTLRCQG---GQETQEYRLYREKKTAPWITRIPQELVK------KGQFPIPSITW 67
Query: 59 KDAGYYECVADNP 71
+ G Y C +
Sbjct: 68 EHTGRYRCYYGSD 80
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 28.3 bits (63), Expect = 0.23
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 3 GRKITFFCMAEGF-PRPH-ITWTKDDIELTFH 32
G C+ + + P+P ++W + H
Sbjct: 234 GGTAALGCLVKDYFPQPVTVSWNSGALTSGVH 265
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 27.5 bits (61), Expect = 0.27
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 2 LGRKITFFCMAEGFPRP-----HITWTKDD---IELTFHKYFQVHEW------FLGNNTI 47
LG +T C + +TW + FH+ F+
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 48 KSKME----IDPATQKDAGYYEC 66
+ +D G Y C
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTC 96
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 27.5 bits (61), Expect = 0.34
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 11/72 (15%)
Query: 2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
G +T C K+ + + K++ I T+
Sbjct: 18 RGNSVTIRCQG---TLEAQEYRLVKEGSPEPWDTQNPLEPKN------KARFSIPSMTEH 68
Query: 60 DAGYYECVADNP 71
AG Y C +P
Sbjct: 69 HAGRYRCYYYSP 80
Score = 25.2 bits (55), Expect = 2.3
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 3 GRKITFFCMAEGFPRPHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
G +T C + T++ D +L++ Q+ + ++ + P T
Sbjct: 114 GENVTLQCGSR-LRFDRFILTEEGDHKLSWTLDSQLT----PSGQFQALFPVGPVTPSHR 168
Query: 62 GYYECVA 68
C
Sbjct: 169 WMLRCYG 175
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 27.8 bits (60), Expect = 0.39
Identities = 13/68 (19%), Positives = 16/68 (23%), Gaps = 16/68 (23%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C + ITWT D + I DAG
Sbjct: 21 GEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLT--------------IQVKEFGDAG 64
Query: 63 YYECVADN 70
Y C
Sbjct: 65 QYTCHKGG 72
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 27.5 bits (60), Expect = 0.47
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTF 31
++G ITF C+++ + + +
Sbjct: 211 LVGSDITFCCVSQEKVLSALIGHTNCPLIHL 241
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A
{Homo sapiens}
Length = 397
Score = 26.5 bits (59), Expect = 0.83
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 3 GRKITFFCMAEGF-PRP-HITWTKDDIEL 29
G+ C GF P + K+ +
Sbjct: 21 GKSNFLNCYVSGFHPSDIEVDLLKNGERI 49
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 25.8 bits (56), Expect = 0.92
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
G + C + ++ W K+ EL + ++ D + +D+G
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELP------------QKHDKHLVLQ-DFSEVEDSG 58
Query: 63 YYECVADN 70
YY C
Sbjct: 59 YYVCYTPA 66
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 25.8 bits (57), Expect = 0.95
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 2 LGRKITFFCMAEGF-PRP-HITWTKDDIELT 30
G++ T C GF P I K+ +
Sbjct: 17 YGKENTLICYVSGFHPPDISIELLKNGEVIA 47
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 26.3 bits (58), Expect = 0.96
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 10/66 (15%)
Query: 1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
G +T C + K+ + ++ I T
Sbjct: 106 SSGGDVTLQCQTR-YGFDQFALYKEG---------DPAPYKNPERWYRASFPIITVTAAH 155
Query: 61 AGYYEC 66
+G Y C
Sbjct: 156 SGTYRC 161
Score = 26.3 bits (58), Expect = 1.2
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 53 IDPATQKDAGYYECVADNP 71
I + AG Y C N
Sbjct: 56 IPAMKRSLAGRYRCSYQNG 74
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 26.5 bits (57), Expect = 1.0
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 10/40 (25%)
Query: 39 EWFLGNNTIKSKME----------IDPATQKDAGYYECVA 68
W N +S I+ T + G+Y C A
Sbjct: 532 SWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEA 571
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 25.8 bits (57), Expect = 1.1
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 1 MLGRKITFFCMAEGFPRPHI--TWTKDDIELT 30
G+ C F PHI K+ ++
Sbjct: 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP 47
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET:
BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Length = 166
Score = 26.0 bits (57), Expect = 1.3
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQ 36
+ E + T K L +Y+
Sbjct: 101 VLEEKLEKEDFTRGKLMSSLHLKRYYG 127
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 25.9 bits (57), Expect = 1.6
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 2 LGRKITFFCMAEGF-PRP-HITWTKDDIELT 30
LG+ T C + P +ITW ++ +T
Sbjct: 103 LGQPNTLICFVDNIFPPVINITWLRNSKSVT 133
>1c8u_A Acyl-COA thioesterase II; internal repeats, hydrolase; HET: LDA;
1.90A {Escherichia coli} SCOP: d.38.1.3 d.38.1.3
Length = 285
Score = 25.4 bits (55), Expect = 2.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 11 MAEGFPRPHITWTKDDIELTFHKYFQVHEWFL 42
GF P I D + FH+ F ++EW L
Sbjct: 214 HGIGFLEPGIQIATIDHSMWFHRPFNLNEWLL 245
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 24.7 bits (54), Expect = 3.4
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 53 IDPATQKDAGYYEC 66
+DAG Y+C
Sbjct: 60 FAVTNLEDAGTYQC 73
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 24.5 bits (53), Expect = 3.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 53 IDPATQKDAGYYECVADNP 71
I + D+G Y C + P
Sbjct: 77 ISNTNRGDSGVYCCRIEVP 95
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 24.0 bits (52), Expect = 5.1
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 20 ITWTKDDIELTFHKYF-------QVHEWFLGNNTIKSK---MEIDPATQKDAGYYEC 66
+ W + L ++ + VH ++G + S + + KD G Y+C
Sbjct: 31 VFWQDQE-NLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 24.3 bits (53), Expect = 6.7
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 3 GRKITFFCMAEGFPRPHI--TWTKD 25
G+ C F PHI K+
Sbjct: 41 GKPNILNCYVTQFHPPHIEIQMLKN 65
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 23.9 bits (52), Expect = 7.9
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 2 LGRKITFFCMAEGFPRPHI--TWTKDDIELT 30
L C + F P + TW ++ +T
Sbjct: 99 LREPNVLICFIDKFTPPVVNVTWLRNGKPVT 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 23.4 bits (51), Expect = 8.0
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 18 PHITWTKDDIELTFHKYFQVHEWFLGNN 45
P +K+D+ F Y + + + N
Sbjct: 31 PLKNVSKEDLFRIFSPYGHIMQINIKNA 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.473
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,353,233
Number of extensions: 63847
Number of successful extensions: 802
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 368
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)