Query psy11827
Match_columns 336
No_of_seqs 248 out of 1733
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:00:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe9_Y Exonuclease 1; exonucle 100.0 1.2E-75 4.1E-80 570.1 29.5 289 1-297 60-350 (352)
2 3q8k_A Flap endonuclease 1; he 100.0 8.3E-47 2.8E-51 365.9 19.4 224 3-240 69-296 (341)
3 3ory_A Flap endonuclease 1; hy 100.0 8.2E-46 2.8E-50 361.5 14.5 242 3-269 78-333 (363)
4 1b43_A Protein (FEN-1); nuclea 100.0 4.3E-46 1.5E-50 360.8 11.3 209 3-233 64-286 (340)
5 2izo_A FEN1, flap structure-sp 100.0 1.4E-45 4.9E-50 358.0 11.3 216 3-234 61-290 (346)
6 1ul1_X Flap endonuclease-1; pr 100.0 1.1E-44 3.9E-49 355.6 7.9 270 2-292 68-346 (379)
7 1a76_A Flap endonuclease-1 pro 100.0 4.6E-44 1.6E-48 344.7 8.8 206 3-233 64-272 (326)
8 1rxw_A Flap structure-specific 100.0 6.9E-42 2.4E-46 330.8 17.2 211 2-233 63-286 (336)
9 1exn_A 5'-exonuclease, 5'-nucl 99.9 3.6E-27 1.2E-31 223.1 10.2 127 65-201 98-235 (290)
10 1bgx_T TAQ DNA polymerase; DNA 99.9 1.8E-28 6.3E-33 260.9 -12.6 180 5-222 53-239 (832)
11 3h7i_A Ribonuclease H, RNAse H 99.3 8.8E-12 3E-16 117.7 10.3 93 72-178 110-211 (305)
12 3pie_A 5'->3' exoribonuclease 97.9 1.4E-05 4.8E-10 86.8 8.0 163 15-178 82-302 (1155)
13 2y35_A LD22664P; hydrolase-DNA 97.9 2.1E-05 7.2E-10 86.0 9.5 163 13-177 80-298 (1140)
14 3fqd_A Protein DHP1, 5'-3' exo 97.9 0.00011 3.8E-09 77.8 14.0 185 15-204 103-373 (899)
15 2a1j_A DNA repair endonuclease 91.2 0.17 5.8E-06 36.3 3.5 25 170-196 7-31 (63)
16 1z00_B DNA repair endonuclease 89.5 0.3 1E-05 37.3 3.7 26 171-198 22-47 (84)
17 1kft_A UVRC, excinuclease ABC 84.9 0.37 1.3E-05 35.7 1.8 27 170-198 27-53 (78)
18 1z00_A DNA excision repair pro 84.7 0.8 2.7E-05 34.6 3.7 27 170-198 22-48 (89)
19 1x2i_A HEF helicase/nuclease; 83.9 0.89 3E-05 32.7 3.5 27 170-198 17-43 (75)
20 2a1j_B DNA excision repair pro 81.2 1.1 3.8E-05 34.0 3.3 26 170-197 35-60 (91)
21 2ztd_A Holliday junction ATP-d 75.7 1.5 5.2E-05 39.1 2.8 36 149-189 75-110 (212)
22 1ixr_A Holliday junction DNA h 74.1 1.4 4.9E-05 38.5 2.3 19 171-189 76-94 (191)
23 2nrt_A Uvrabc system protein C 72.7 1.9 6.4E-05 38.7 2.6 24 170-195 171-194 (220)
24 3vdp_A Recombination protein R 69.4 5.4 0.00018 35.5 4.8 50 170-240 29-78 (212)
25 1cuk_A RUVA protein; DNA repai 69.2 1.5 5.2E-05 38.7 1.3 19 171-189 77-95 (203)
26 1vdd_A Recombination protein R 65.7 6.8 0.00023 35.2 4.8 49 170-239 15-63 (228)
27 3c65_A Uvrabc system protein C 61.3 1.7 5.9E-05 39.1 0.0 25 170-196 176-200 (226)
28 2duy_A Competence protein come 60.5 3.2 0.00011 30.1 1.4 19 170-188 30-48 (75)
29 2bgw_A XPF endonuclease; hydro 60.0 4.9 0.00017 35.2 2.8 24 171-196 166-189 (219)
30 4gfj_A Topoisomerase V; helix- 55.1 8 0.00027 38.1 3.5 25 171-197 472-496 (685)
31 4gco_A Protein STI-1; structur 50.5 20 0.00069 27.5 4.7 43 40-82 16-61 (126)
32 2bcq_A DNA polymerase lambda; 47.3 14 0.00048 34.8 3.8 26 171-197 100-125 (335)
33 1jms_A Terminal deoxynucleotid 44.8 15 0.00052 35.3 3.7 26 171-197 125-150 (381)
34 1s5l_U Photosystem II 12 kDa e 43.6 6.4 0.00022 32.5 0.7 16 171-186 67-82 (134)
35 3b0x_A DNA polymerase beta fam 43.5 19 0.00063 36.4 4.3 29 171-199 97-125 (575)
36 2fmp_A DNA polymerase beta; nu 43.0 14 0.00049 34.8 3.2 27 170-197 101-127 (335)
37 2ihm_A POL MU, DNA polymerase 42.5 16 0.00053 34.9 3.3 25 171-196 106-130 (360)
38 2w9m_A Polymerase X; SAXS, DNA 42.3 19 0.00066 36.3 4.2 28 170-198 100-127 (578)
39 2ztd_A Holliday junction ATP-d 42.2 9.3 0.00032 33.9 1.6 36 152-188 108-144 (212)
40 4gcn_A Protein STI-1; structur 40.6 36 0.0012 26.0 4.7 28 41-68 12-39 (127)
41 2otd_A Glycerophosphodiester p 39.1 23 0.00079 31.2 3.7 43 73-116 198-240 (247)
42 1ixr_A Holliday junction DNA h 36.1 17 0.00058 31.5 2.3 22 167-188 107-128 (191)
43 3ch0_A Glycerophosphodiester p 35.4 26 0.0009 31.2 3.5 44 72-116 226-269 (272)
44 2qip_A Protein of unknown func 34.1 50 0.0017 27.3 4.9 49 69-117 61-123 (165)
45 3rkv_A Putative peptidylprolyl 33.8 54 0.0019 25.5 4.9 34 33-66 7-40 (162)
46 3arc_U Photosystem II 12 kDa e 32.2 16 0.00055 28.3 1.3 17 170-186 29-45 (97)
47 1rvv_A Riboflavin synthase; tr 32.1 63 0.0021 27.0 5.1 45 65-109 25-76 (154)
48 2hr2_A Hypothetical protein; a 31.1 56 0.0019 27.3 4.7 34 36-69 10-43 (159)
49 3nq4_A 6,7-dimethyl-8-ribityll 30.9 50 0.0017 27.7 4.3 45 65-109 25-77 (156)
50 1di0_A Lumazine synthase; tran 30.8 41 0.0014 28.3 3.7 45 65-109 23-74 (158)
51 3ax2_A Mitochondrial import re 30.7 38 0.0013 24.8 3.1 31 38-68 18-48 (73)
52 1kz1_A 6,7-dimethyl-8-ribityll 30.6 70 0.0024 26.9 5.1 45 65-109 30-82 (159)
53 2ziu_A MUS81 protein; helix-ha 30.6 39 0.0013 31.0 4.0 30 170-201 240-269 (311)
54 3e61_A Putative transcriptiona 30.5 26 0.0009 30.3 2.6 54 70-124 140-196 (277)
55 1vd6_A Glycerophosphoryl diest 30.3 28 0.00094 30.3 2.7 44 72-116 176-219 (224)
56 2i5h_A Hypothetical protein AF 30.2 20 0.00067 31.6 1.7 47 153-199 113-167 (205)
57 2pz0_A Glycerophosphoryl diest 30.2 26 0.0009 31.0 2.6 44 72-116 201-244 (252)
58 1c2y_A Protein (lumazine synth 30.0 59 0.002 27.3 4.6 45 65-109 26-76 (156)
59 3hcw_A Maltose operon transcri 29.3 22 0.00075 31.4 1.9 117 2-120 82-207 (295)
60 2xw6_A MGS, methylglyoxal synt 29.3 65 0.0022 26.3 4.6 34 76-109 42-79 (134)
61 3ks6_A Glycerophosphoryl diest 28.8 29 0.00098 30.8 2.6 41 74-115 196-236 (250)
62 3qvq_A Phosphodiesterase OLEI0 28.7 31 0.0011 30.5 2.8 42 73-115 201-242 (252)
63 1hqk_A 6,7-dimethyl-8-ribityll 28.2 68 0.0023 26.8 4.7 45 65-109 25-76 (154)
64 2obx_A DMRL synthase 1, 6,7-di 28.1 46 0.0016 28.0 3.6 45 65-109 24-75 (157)
65 2oog_A Glycerophosphoryl diest 27.1 32 0.0011 31.1 2.6 44 72-116 231-274 (287)
66 3upv_A Heat shock protein STI1 26.9 85 0.0029 23.0 4.7 29 40-68 7-35 (126)
67 3ma5_A Tetratricopeptide repea 26.8 63 0.0021 23.2 3.9 22 45-66 49-70 (100)
68 2o55_A Putative glycerophospho 26.8 32 0.0011 30.4 2.6 44 72-116 202-249 (258)
69 1zcc_A Glycerophosphodiester p 26.7 40 0.0014 29.7 3.1 44 72-116 184-228 (248)
70 1cuk_A RUVA protein; DNA repai 26.6 22 0.00075 31.1 1.3 20 168-187 109-128 (203)
71 2l6j_A TPR repeat-containing p 26.0 80 0.0027 22.1 4.3 28 41-68 8-35 (111)
72 3l12_A Putative glycerophospho 25.7 37 0.0013 31.1 2.8 43 73-116 259-301 (313)
73 3no3_A Glycerophosphodiester p 25.5 32 0.0011 30.3 2.2 43 73-116 187-229 (238)
74 3ma5_A Tetratricopeptide repea 25.4 74 0.0025 22.8 4.0 42 41-82 11-55 (100)
75 1vq8_Y 50S ribosomal protein L 25.1 15 0.00052 33.1 0.0 25 169-195 17-42 (241)
76 3vtx_A MAMA; tetratricopeptide 24.6 67 0.0023 25.2 4.0 42 41-82 9-53 (184)
77 1na3_A Designed protein CTPR2; 24.2 82 0.0028 21.1 3.9 24 43-66 15-38 (91)
78 4gco_A Protein STI-1; structur 24.0 37 0.0013 25.9 2.1 27 42-68 52-78 (126)
79 2edu_A Kinesin-like protein KI 23.9 37 0.0013 25.7 2.1 18 170-187 43-60 (98)
80 1ejb_A Lumazine synthase; anal 23.4 1.2E+02 0.0042 25.6 5.4 45 65-109 29-85 (168)
81 2kc7_A BFR218_protein; tetratr 22.0 84 0.0029 21.8 3.7 25 42-66 5-29 (99)
82 3fhg_A Mjogg, N-glycosylase/DN 21.9 41 0.0014 29.1 2.2 17 170-186 120-136 (207)
83 1ci4_A Protein (barrier-TO-aut 21.8 33 0.0011 26.2 1.3 32 169-204 20-51 (89)
84 1om2_A Protein (mitochondrial 21.3 63 0.0022 24.9 2.9 30 38-67 21-50 (95)
85 3gyz_A Chaperone protein IPGC; 21.2 1E+02 0.0034 24.6 4.4 43 40-82 39-84 (151)
86 1o1z_A GDPD, glycerophosphodie 21.1 38 0.0013 29.7 1.8 43 72-116 188-230 (234)
87 1hxi_A PEX5, peroxisome target 21.0 96 0.0033 23.2 4.0 28 41-68 21-48 (121)
88 2fbn_A 70 kDa peptidylprolyl i 20.9 1.6E+02 0.0055 23.5 5.7 37 31-67 32-68 (198)
89 2yxb_A Coenzyme B12-dependent 20.8 1.5E+02 0.0052 24.3 5.5 46 68-114 83-131 (161)
90 2dl1_A Spartin; SPG20, MIT, st 20.4 3.3E+02 0.011 21.6 8.3 61 29-99 14-76 (116)
91 3fhf_A Mjogg, N-glycosylase/DN 20.2 37 0.0013 29.9 1.5 18 171-188 129-146 (214)
No 1
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=1.2e-75 Score=570.08 Aligned_cols=289 Identities=43% Similarity=0.732 Sum_probs=269.2
Q ss_pred ChHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHH
Q psy11827 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRA 80 (336)
Q Consensus 1 mk~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~ 80 (336)
++++++|+++||+|||||||.++|.|+.++.+|+++|+++.++||+++++|+.++|+++|+++++||++|+..++++|+.
T Consensus 60 ~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~ 139 (352)
T 3qe9_Y 60 MKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARS 139 (352)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCeeeeccccccccccCCcCC--CCHHHHH
Q psy11827 81 RGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAK--FTDAKFR 158 (336)
Q Consensus 81 ~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~~~i~~~~l~~~~~~~~~~--lt~~qf~ 158 (336)
+||+|++||||||||||||+++|++++|+|+|+|+|+||+++|+++++..+++..++.+.+.. +..++ ++++||+
T Consensus 140 ~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~g~~l~~~q~i 216 (352)
T 3qe9_Y 140 QGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGNGLEIDQARLGM---CRQLGDVFTEEKFR 216 (352)
T ss_dssp TTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTSEEEEEEGGGGTT---CCTTCSSCCHHHHH
T ss_pred cCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCCCcEEEeHHHHHH---HHHhCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999888777787766532 33567 9999999
Q ss_pred HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCCc
Q psy11827 159 YMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKE 238 (336)
Q Consensus 159 ~~~iL~GcDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~~ 238 (336)
|+|+|+||||+|||||||+|||++||++|++++++++++++.++++ .+..+|++|.+.|.+|+.||+||+||||.+++
T Consensus 217 d~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~--~~~~vp~~~~~~~~~A~~~F~~q~V~dp~~~~ 294 (352)
T 3qe9_Y 217 YMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLK--MNITVPEDYINGFIRANNTFLYQLVFDPIKRK 294 (352)
T ss_dssp HHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHT--CCCCCCHHHHHHHHHHHHHHHHCEEEETTTTE
T ss_pred HHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhc--cCCCCCHHHHHHHHHHHHHhCCCEEECCCCCe
Confidence 9999999999999999999999999999977789999999998876 45689999999999999999999999999999
Q ss_pred eeECCCCCCCCCccchhhhcccCCCCCHHHHHHHHcCCCCcccccccccCCCCCCCCCC
Q psy11827 239 VVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLP 297 (336)
Q Consensus 239 ~~~L~~~~~~~~~~~~~~~~~G~~~l~~~~~~~ia~G~~~p~t~~~~~~~~p~~~~~~~ 297 (336)
+++|+|+|++++++++++ +|+. +++++|++||.|++||+|+|+|++|+|++++++.
T Consensus 295 ~~~l~~~~~~~~~~~~~~--~G~~-~~~~~~~~ia~G~~~p~t~~~~~~~~~~~~~~~~ 350 (352)
T 3qe9_Y 295 LIPLNAYEDDVDPETLSY--AGQY-VDDSIALQIALGNKDINTFEQIDDYNPDTAMPAH 350 (352)
T ss_dssp EEESSCCCSSCCGGGCCT--TCCC-CCHHHHHHHHHTCBCTTTCCBCCCCCTTCC----
T ss_pred EeeCCCCCCCCChhhhhh--cCCC-CCHHHHHHHhCCCCCcccccccccCCCCCCCCCC
Confidence 999999999999999988 9997 9999999999999999999999999999987543
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=8.3e-47 Score=365.94 Aligned_cols=224 Identities=25% Similarity=0.339 Sum_probs=201.1
Q ss_pred HHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcC
Q psy11827 3 YIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARG 82 (336)
Q Consensus 3 ~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~g 82 (336)
++..|+++||+|+|||||.+++.|.++..+|+++|.++.+++.++.+.|..+++.++++++++||++++..++++|+.+|
T Consensus 69 ~~~~ll~~~i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~g 148 (341)
T 3q8k_A 69 RTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMG 148 (341)
T ss_dssp HHHHHHTTTCEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcC
Confidence 44557789999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCC---e-eeeccccccccccCCcCCCCHHHHH
Q psy11827 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGN---C-CFMDREKLPSALKMPLAKFTDAKFR 158 (336)
Q Consensus 83 V~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~---~-~~i~~~~l~~~~~~~~~~lt~~qf~ 158 (336)
|||++||||||||||+|++.|.+++|+|+|+|+|+||+++|+++++..++ . ..++.+.+.+ .+|++++||+
T Consensus 149 ip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~-----~~gl~~~q~i 223 (341)
T 3q8k_A 149 IPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ-----ELGLNQEQFV 223 (341)
T ss_dssp CCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHH-----HHTCCHHHHH
T ss_pred CCEEECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHH-----HhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999876432 1 3577776655 7899999999
Q ss_pred HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCCc
Q psy11827 159 YMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKE 238 (336)
Q Consensus 159 ~~~iL~GcDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~~ 238 (336)
|+|+|+||||++||||||+|||++||++|+ +++++++++.+. +..+|++|. |.+|+.+|.|+.|.+|.+..
T Consensus 224 d~~~L~G~D~~~gipGiG~KtA~kll~~~g--sle~i~~~~~~~-----k~~~~~~~~--~~~~r~l~l~~~V~~~~~~~ 294 (341)
T 3q8k_A 224 DLCILLGSDYCESIRGIGPKRAVDLIQKHK--SIEEIVRRLDPN-----KYPVPENWL--HKEAHQLFLEPEVLDPESVE 294 (341)
T ss_dssp HHHHHHCCSSSCCCTTCCHHHHHHHHHHHC--SHHHHHHHSCTT-----TSCCCTTCC--HHHHHHHHHSCCCCCTTTSC
T ss_pred HHHHhcCCCCCCCCCCccHHHHHHHHHHcC--CHHHHHHHHHhc-----CCCCCcccc--hHHHHHHhCCCCCCCCcccc
Confidence 999999999999999999999999999998 799999988642 246788887 78899999999999987644
Q ss_pred ee
Q psy11827 239 VV 240 (336)
Q Consensus 239 ~~ 240 (336)
+.
T Consensus 295 l~ 296 (341)
T 3q8k_A 295 LK 296 (341)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 3
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=8.2e-46 Score=361.50 Aligned_cols=242 Identities=26% Similarity=0.285 Sum_probs=202.0
Q ss_pred HHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcC
Q psy11827 3 YIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARG 82 (336)
Q Consensus 3 ~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~g 82 (336)
++..|+.+||+|+|||||.+++.|.++..+|++.|++..+...+++++|+.++|.++|+++++||++|+..++++|+.+|
T Consensus 78 r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~G 157 (363)
T 3ory_A 78 RTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMG 157 (363)
T ss_dssp HHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCC
Confidence 44556789999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCe-------------eeeccccccccccCCc
Q psy11827 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-------------CFMDREKLPSALKMPL 149 (336)
Q Consensus 83 V~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~-------------~~i~~~~l~~~~~~~~ 149 (336)
|+|++||||||||||+|+++|++++|+|+|+|+|+||+++|+++++..+.+ ..++.+.+.+ .
T Consensus 158 Ip~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~-----~ 232 (363)
T 3ory_A 158 IPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLV-----Q 232 (363)
T ss_dssp CCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHH-----H
T ss_pred CCEEEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHH-----H
Confidence 999999999999999999999999999999999999999999998765432 2355555544 7
Q ss_pred CCCCHHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhcc
Q psy11827 150 AKFTDAKFRYMCILSGCDYWT-GIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLY 228 (336)
Q Consensus 150 ~~lt~~qf~~~~iL~GcDy~~-~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~ 228 (336)
+|++++||+|+|+|+||||+| ||||||+|||++||++|+ |++++++++.. ..+|- .|.+++.+|+|
T Consensus 233 ~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~g--sle~il~~~~~-------~~~~~----~~~~~~~~f~~ 299 (363)
T 3ory_A 233 LGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYG--GIEKIPKPILK-------SPIEV----DVIAIKKYFLQ 299 (363)
T ss_dssp HTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHT--SSTTSCGGGCC-------CSSCC----CHHHHHHHHHS
T ss_pred hCcCHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcC--CHHHHHHhccc-------ccCCC----CHHHHHHHhcC
Confidence 899999999999999999999 999999999999999998 67888877653 12332 35789999999
Q ss_pred CceecCCCCceeECCCCCCCCCccchhhhcccCCCCCHHHH
Q psy11827 229 QPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQA 269 (336)
Q Consensus 229 ~~V~dP~~~~~~~L~~~~~~~~~~~~~~~~~G~~~l~~~~~ 269 (336)
+.|.| +-++.+-.|.. +....|+ ++...++++-.
T Consensus 300 p~v~~--~~~~~w~~pd~----~~l~~fl-~~~~~f~~~rv 333 (363)
T 3ory_A 300 PQVTD--NYRIEWHTPDP----DAVKRIL-VDEHDFSIDRV 333 (363)
T ss_dssp CCCCS--CCCCCCCCCCH----HHHHHHH-TTTTCCCHHHH
T ss_pred CCCCC--CCCCCCCCCCH----HHHHHHH-HhccCCCHHHH
Confidence 99998 22343322211 2334555 55555666443
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=4.3e-46 Score=360.78 Aligned_cols=209 Identities=29% Similarity=0.365 Sum_probs=185.6
Q ss_pred HHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcC
Q psy11827 3 YIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARG 82 (336)
Q Consensus 3 ~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~g 82 (336)
++..|+++||+|||||||.+++.|.++..+|+++|+++.+++.++++.|+.+++.++++++.++|+.++..++++|+.+|
T Consensus 64 ~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~g 143 (340)
T 1b43_A 64 RTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMG 143 (340)
T ss_dssp HHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 44567789999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCe-------------eeeccccccccccCCc
Q psy11827 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-------------CFMDREKLPSALKMPL 149 (336)
Q Consensus 83 V~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~-------------~~i~~~~l~~~~~~~~ 149 (336)
|||++||||||||||+|+++|++++|+|+|||+|+||+++|+++++..|.+ ..++.+.+.+ .
T Consensus 144 ip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~-----~ 218 (340)
T 1b43_A 144 IPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLK-----E 218 (340)
T ss_dssp CCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHH-----H
T ss_pred CcEEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHH-----H
Confidence 999999999999999999999999999999999999999999999876543 1355555544 7
Q ss_pred CCCCHHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhcc
Q psy11827 150 AKFTDAKFRYMCILSGCDYWT-GIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLY 228 (336)
Q Consensus 150 ~~lt~~qf~~~~iL~GcDy~~-~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~ 228 (336)
+|++++||+|+|+|+||||+| ||||||+|||++||++|+ ++++++++. ++|. +.+++.+|+|
T Consensus 219 ~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~g--sle~il~~~-------------~~~~--~~~~~~~~~~ 281 (340)
T 1b43_A 219 LKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSK--DPLAKFQKQ-------------SDVD--LYAIKEFFLN 281 (340)
T ss_dssp HTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCS--SGGGGTGGG-------------CSSC--HHHHHHHHHS
T ss_pred hCCCHHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcC--CHHHHHcCC-------------CCcc--HHHHHHHHhC
Confidence 899999999999999999999 999999999999999997 577766542 2221 5678899999
Q ss_pred Cceec
Q psy11827 229 QPVYD 233 (336)
Q Consensus 229 ~~V~d 233 (336)
++|.|
T Consensus 282 ~~v~d 286 (340)
T 1b43_A 282 PPVTD 286 (340)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99998
No 5
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-45 Score=358.00 Aligned_cols=216 Identities=25% Similarity=0.345 Sum_probs=137.1
Q ss_pred HHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcC
Q psy11827 3 YIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARG 82 (336)
Q Consensus 3 ~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~g 82 (336)
++..|+++||+|||||||.+++.|.++..+|++.|++..+...++++.|+.++|.+++++++.+|+.++..++++|+.+|
T Consensus 61 ~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~g 140 (346)
T 2izo_A 61 RTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMG 140 (346)
T ss_dssp HHHHHHHHTEEEEEEECC----------------------------------------------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCC
Confidence 44557788999999999999889999999999999988877777889999999999999999999999999999999999
Q ss_pred CceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCe-------------eeeccccccccccCCc
Q psy11827 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-------------CFMDREKLPSALKMPL 149 (336)
Q Consensus 83 V~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~-------------~~i~~~~l~~~~~~~~ 149 (336)
|+|++||||||||||+|+++|++++|+|+|+|+++||+++|+++++..|++ ..++.+.+.+ .
T Consensus 141 i~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~-----~ 215 (346)
T 2izo_A 141 IPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLK-----K 215 (346)
T ss_dssp CCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHH-----H
T ss_pred CCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHH-----H
Confidence 999999999999999999999999999999999999999999998765432 1355555544 7
Q ss_pred CCCCHHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhcc
Q psy11827 150 AKFTDAKFRYMCILSGCDYWT-GIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLY 228 (336)
Q Consensus 150 ~~lt~~qf~~~~iL~GcDy~~-~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~ 228 (336)
+|++++||+++|+|+||||+| ||||||+|||++||++|+ +++++++++... .++++|. |.++..+|+|
T Consensus 216 ~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~g--sle~i~~~~~~~-------k~~~~~~--~~~l~~i~~~ 284 (346)
T 2izo_A 216 LGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYG--KIEKAMEYGEIS-------KKDINFN--IDEIRGLFLN 284 (346)
T ss_dssp HTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSS--CC--------------------------CTTHHHHHHS
T ss_pred cCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcC--CHHHHHHHHHhc-------cCCCCcc--HHHHHHHhhC
Confidence 899999999999999999999 999999999999999997 689999887652 2677775 8999999999
Q ss_pred CceecC
Q psy11827 229 QPVYDP 234 (336)
Q Consensus 229 ~~V~dP 234 (336)
+.|.++
T Consensus 285 ~~v~~~ 290 (346)
T 2izo_A 285 PQVVKP 290 (346)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 999885
No 6
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.1e-44 Score=355.64 Aligned_cols=270 Identities=22% Similarity=0.305 Sum_probs=190.1
Q ss_pred hHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHc
Q psy11827 2 KYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRAR 81 (336)
Q Consensus 2 k~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~ 81 (336)
.++..|+++||+|+|||||.+++.|..+..+|+++|++..+.+|+++++|+.+++.++++++++||+.++..++++|+.+
T Consensus 68 ~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~ 147 (379)
T 1ul1_X 68 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLM 147 (379)
T ss_dssp HHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCC----eeeeccccccccccCCcCCCCHHHH
Q psy11827 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGN----CCFMDREKLPSALKMPLAKFTDAKF 157 (336)
Q Consensus 82 gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~----~~~i~~~~l~~~~~~~~~~lt~~qf 157 (336)
||+|++||||||||||+|++.|.+++|+|+|||+|+||+++|+++++..+. ...++.+.+.+ .+|++++||
T Consensus 148 Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~-----~~gl~~~q~ 222 (379)
T 1ul1_X 148 GIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ-----ELGLNQEQF 222 (379)
T ss_dssp TCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHH-----HHTCCHHHH
T ss_pred CCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHH-----HhCCCHHHH
Confidence 999999999999999999999999999999999999999999999876432 23677777655 789999999
Q ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCC
Q psy11827 158 RYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSK 237 (336)
Q Consensus 158 ~~~~iL~GcDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~ 237 (336)
+++|+|+||||+++|||||+|||++||++|+ ++++++.++... +..+|++|. |.+|+.+|.|+.|.+|.+-
T Consensus 223 id~~~L~G~D~~d~IpGIG~KtA~kLl~~~g--sle~i~~~~~~~-----k~~~~~~~~--~~~ar~l~l~~~v~~~~~~ 293 (379)
T 1ul1_X 223 VDLCILLGSDYCESIRGIGPKRAVDLIQKHK--SIEEIVRRLDPN-----KYPVPENWL--HKEAHQLFLEPEVLDPESV 293 (379)
T ss_dssp HHHHHHHHCSSSCCCTTCCHHHHHHHHHHSS--SHHHHHTTCCCT-----TSCCCSSCC--HHHHHHHHHSCCCCCGGGC
T ss_pred HHHHHHhCCCcCCCCCCcCHHHHHHHHHHcC--CHHHHHHHHHhh-----cccCCCcCC--HHHHHHHhcCCeeCCCCCc
Confidence 9999999999999999999999999999997 799998887542 235777774 4579999999999986543
Q ss_pred ceeECCCCCCCCCccch-hhhcccCCCCCHHH----HHHHHcCCCCcccccccccCCCCC
Q psy11827 238 EVVPLNPLESEMRDEVF-SQLSLKELELPKDQ----AFQLALGNLDPFSLEEMDQWNPDS 292 (336)
Q Consensus 238 ~~~~L~~~~~~~~~~~~-~~~~~G~~~l~~~~----~~~ia~G~~~p~t~~~~~~~~p~~ 292 (336)
.+..-.| +.+.+ .++ +....+.++- ...+-.. +...+...+|+|++..
T Consensus 294 ~l~~~~p-----d~~~l~~fl-~~~~~f~~~rv~~~~~rl~~~-~~~~~q~~l~~ff~~~ 346 (379)
T 1ul1_X 294 ELKWSEP-----NEEELIKFM-CGEKQFSEERIRSGVKRLSKS-RQGSTQGRLDDFFKVT 346 (379)
T ss_dssp CCCCCCC-----CHHHHHHHT-TTTSCCCHHHHHHHHHHHHHH-HSCCSBCCHHHHSEEE
T ss_pred cCCCCCC-----CHHHHHHHH-HHHcCCCHHHHHHHHHHHHHh-hccCCCCcHHhhcCCC
Confidence 2221111 12223 323 4333454332 2333222 2444677888888764
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=4.6e-44 Score=344.72 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=183.6
Q ss_pred HHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcC
Q psy11827 3 YIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARG 82 (336)
Q Consensus 3 ~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~g 82 (336)
++..|+.+||+|+|||||.+++.|.++..+|++.|++..+...++++.|+.++|.+++++++.+|+.++..++++|+.+|
T Consensus 64 ~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~g 143 (326)
T 1a76_A 64 KTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMG 143 (326)
T ss_dssp HHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 34455689999999999999989999998898888877666656677899899999999999999999999999999999
Q ss_pred CceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCe-eeeccccccccccCCcCCCCHHHHHHHH
Q psy11827 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-CFMDREKLPSALKMPLAKFTDAKFRYMC 161 (336)
Q Consensus 83 V~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~-~~i~~~~l~~~~~~~~~~lt~~qf~~~~ 161 (336)
|+|++||||||||||+|+++|++++|+|+|||+++||+++|+++++..++. ..++.+.+.+ .+|++++||+|+|
T Consensus 144 i~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~v~~-----~~gl~~~q~id~~ 218 (326)
T 1a76_A 144 IPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEVLE-----DLRISLDDLIDIA 218 (326)
T ss_dssp CCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCSSCCEEEEHHHHHH-----HHTCCHHHHHHHH
T ss_pred CCeEECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCCCceEEEEHHHHHH-----HcCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877643 3677777765 7899999999999
Q ss_pred HHhCCCCCC-CCCCCCHHHHHHHHHHcCCCcHHHHH-HHHhhhcccCcccccchhHHHHHHhHhhhhccCceec
Q psy11827 162 ILSGCDYWT-GIKGMGLKKAKDYVFSIMDPDFENAL-RKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYD 233 (336)
Q Consensus 162 iL~GcDy~~-~ipgiG~ktA~kli~~~~~~si~~vl-~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~d 233 (336)
+|+||||+| ||||||+|||++||++ + ++++++ +++.. |.+++.+|+|+.|.+
T Consensus 219 ~L~GsD~~p~GvpGiG~ktA~kli~~-g--sle~i~~~~~~~-----------------~~~~~~~~l~~~l~~ 272 (326)
T 1a76_A 219 IFMGTDYNPGGVKGIGFKRAYELVRS-G--VAKDVLKKEVEY-----------------YDEIKRIFKEPKVTD 272 (326)
T ss_dssp HHHCCTTSTTTTTTCCHHHHHHHHHH-T--CHHHHHHHHSTT-----------------HHHHHHHHHSCCCCC
T ss_pred HHcCCCCCCCCCCCcCHHHHHHHHHc-C--CHHHHHHHHHhH-----------------HHHHHHHHhCCCCCC
Confidence 999999999 9999999999999999 6 699988 76532 357889999999997
No 8
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=6.9e-42 Score=330.80 Aligned_cols=211 Identities=27% Similarity=0.375 Sum_probs=182.0
Q ss_pred hHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHc
Q psy11827 2 KYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRAR 81 (336)
Q Consensus 2 k~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~ 81 (336)
.++..|++++|+|||||||..++.|..+..+|+..|.+..+.+.++.+.|+ +++..+++++.+||++++..++++|+.+
T Consensus 63 ~~l~~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~vt~~~~~~~~~lL~~~ 141 (336)
T 1rxw_A 63 YRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGRVDEYIVDSAKTLLSYM 141 (336)
T ss_dssp HHHHHHHHHTCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhccCCHHHHHHHHHHHHhC
Confidence 345577889999999999999999999999999999998888888888998 8888899999999999999999999999
Q ss_pred CCceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCe-------------eeeccccccccccCC
Q psy11827 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-------------CFMDREKLPSALKMP 148 (336)
Q Consensus 82 gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~-------------~~i~~~~l~~~~~~~ 148 (336)
||+|++||||||||||+|+++|++++|+|+|+|+++||+++|+++++..+.+ ..++.+.+.+
T Consensus 142 gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----- 216 (336)
T 1rxw_A 142 GIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLK----- 216 (336)
T ss_dssp TCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHH-----
T ss_pred CCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHH-----
Confidence 9999999999999999999999999999999999999999999998765421 2355555544
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhcc
Q psy11827 149 LAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLY 228 (336)
Q Consensus 149 ~~~lt~~qf~~~~iL~GcDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~ 228 (336)
.+|++++||+|+|+|+||||+||+||||+|||++||++|+ +++++++++... ++ .+.+...+|.+
T Consensus 217 ~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~g--sle~i~~~~~~~--------l~-----~~~~l~~i~~~ 281 (336)
T 1rxw_A 217 RLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYG--DIFRALKALKVN--------ID-----HVEEIRNFFLN 281 (336)
T ss_dssp HHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHS--SHHHHHHHHTC-----------------CHHHHHHHHS
T ss_pred HcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcC--CHHHHHHhCCCC--------Cc-----cHHHHHHHHhC
Confidence 7899999999999999999999999999999999999997 699999987531 11 12367788888
Q ss_pred Cceec
Q psy11827 229 QPVYD 233 (336)
Q Consensus 229 ~~V~d 233 (336)
..|-+
T Consensus 282 ~~v~~ 286 (336)
T 1rxw_A 282 PPVTD 286 (336)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.94 E-value=3.6e-27 Score=223.14 Aligned_cols=127 Identities=14% Similarity=0.188 Sum_probs=109.6
Q ss_pred cchHHHHHHHHHHHHH--cCCceecCc-cchHHHHHHHHHc----CCeEEEecCCCceEeecccEE-EEecCCCCCeeee
Q psy11827 65 DVTHKMALNVIQACRA--RGVDCIVAP-FEADAQMAYLNIA----GYADYVITEDSDLLVFGAKKI-IYKLDLSGNCCFM 136 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~--~gV~~ivAP-yEADAQlA~L~~~----g~vdaViT~DSDll~fg~~~v-i~kl~~~g~~~~i 136 (336)
.+.++|+..++++|+. +||+++.+| ||||+|||+|++. |....|+|+|+|+++|++++| +++.. ....+
T Consensus 98 ~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~---~~~~~ 174 (290)
T 1exn_A 98 ALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFT---TRREY 174 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEETT---TTEEE
T ss_pred hHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEECC---CCEEE
Confidence 3455656789999999 999999999 7999999999985 888899999999999999887 44421 33457
Q ss_pred ccccccccccCCcCCCCH-HHHHHHHHHhC--CCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhh
Q psy11827 137 DREKLPSALKMPLAKFTD-AKFRYMCILSG--CDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINV 201 (336)
Q Consensus 137 ~~~~l~~~~~~~~~~lt~-~qf~~~~iL~G--cDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~ 201 (336)
+.+.+.. .+|+++ +||+|+|+|+| |||+||+||||+|||.+||++|+ +++++++++..
T Consensus 175 ~~~~v~e-----k~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~g--sle~i~~~~~~ 235 (290)
T 1exn_A 175 HLRDMYE-----HHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFG--NVLDIIDQLPL 235 (290)
T ss_dssp CGGGHHH-----HHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHC--SHHHHHHHCSC
T ss_pred cHHHHHH-----HcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcC--CHHHHHHHHHH
Confidence 7766665 789999 99999999999 99999999999999999999998 79999998865
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.92 E-value=1.8e-28 Score=260.89 Aligned_cols=180 Identities=20% Similarity=0.276 Sum_probs=138.2
Q ss_pred HHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcCCc
Q psy11827 5 HMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVD 84 (336)
Q Consensus 5 ~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~gV~ 84 (336)
++|+++++.|+|||||..++-|.....+++..|.+.- +-+. ..+..++++|+.+||+
T Consensus 53 ~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~p----------------e~l~-------~q~~~i~~~l~~~gi~ 109 (832)
T 1bgx_T 53 KALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTP----------------EDFP-------RQLALIKELVDLLGLA 109 (832)
T ss_dssp HGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCC----------------TTST-------TGGGTHHHHHHHTTCC
T ss_pred HHHHHcCCeEEEEEcCCCccccccchHHHHhccccCh----------------HHHH-------HHHHHHHHHHHHCCCC
Confidence 4455667999999999876666555554444443221 1111 1235688999999999
Q ss_pred eecCc-cchHHHHHHHHH----cCCeEEEecCCCceEeecccEEEEecCCCCCeeeeccccccccccCCcCCCCHHHHHH
Q psy11827 85 CIVAP-FEADAQMAYLNI----AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRY 159 (336)
Q Consensus 85 ~ivAP-yEADAQlA~L~~----~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~~~i~~~~l~~~~~~~~~~lt~~qf~~ 159 (336)
|+++| ||||+|||+|++ .|+.++|+|+|+|+++|++++|.+... .| ..++.+.+.+ .+|++++||+|
T Consensus 110 ~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~-~g--~~~~~~~v~~-----~~gv~p~q~id 181 (832)
T 1bgx_T 110 RLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP-EG--YLITPAWLWE-----KYGLRPDQWAD 181 (832)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS-SS--CCBCSTTHHH-----HTCCCGGGTTT
T ss_pred EEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC-CC--cEEcHHHHHH-----HHCcCHHHHHH
Confidence 99999 699999999988 799999999999999999999876654 33 5677777765 78999999999
Q ss_pred HHHHhC--CCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhH
Q psy11827 160 MCILSG--CDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNT 222 (336)
Q Consensus 160 ~~iL~G--cDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A 222 (336)
+|+|+| |||+|||||||+|||.+||++|+ ++++++.++.+.. ..+++.+.+....|
T Consensus 182 ~~~L~GD~sDnipGVpGIG~KtA~kLl~~~g--sle~i~~~~~~~~-----~~~~~~l~~~~~~a 239 (832)
T 1bgx_T 182 YRALTGDESDNLPGVKGIGEKTARKLLEEWG--SLEALLKNLDRLK-----PAIREKILAHMDDL 239 (832)
T ss_dssp TTTSSCCSSSCCCCCCCSSSCTTTTTGGGTT--SSCSSSSSCCCCC-----TTTSHHHHSSCSST
T ss_pred HHHhcCCccccCCCCCCcCchHHHHHHHHCC--CHHHHHHHHHHhC-----hHHHHHHHHhHHHH
Confidence 999999 99999999999999999999997 6788887765421 13555555444333
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.29 E-value=8.8e-12 Score=117.74 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCceecCc-cchHHHHHHHHH----cCCeEEEecCCCceEeecc-cEE-EEecCCCCCeeeecccccccc
Q psy11827 72 LNVIQACRARGVDCIVAP-FEADAQMAYLNI----AGYADYVITEDSDLLVFGA-KKI-IYKLDLSGNCCFMDREKLPSA 144 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAP-yEADAQlA~L~~----~g~vdaViT~DSDll~fg~-~~v-i~kl~~~g~~~~i~~~~l~~~ 144 (336)
..+.++|+.+||+++..| ||||..+|.|++ .|.--.|+|+|.|++++.. +.| +++.. . .+.+.+
T Consensus 110 p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~~~~~~--~------~~~V~e- 180 (305)
T 3h7i_A 110 KVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVKQWSPM--H------KKWVKI- 180 (305)
T ss_dssp HHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEEEEETT--T------TEEECS-
T ss_pred HHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeEEEecC--C------HHHHHH-
Confidence 568889999999999988 899999999987 5777789999999999986 554 23321 1 122322
Q ss_pred ccCCcCCCCHHHHHHHHHHhC--CCCCCCCCCCCHH
Q psy11827 145 LKMPLAKFTDAKFRYMCILSG--CDYWTGIKGMGLK 178 (336)
Q Consensus 145 ~~~~~~~lt~~qf~~~~iL~G--cDy~~~ipgiG~k 178 (336)
.+|+ ++|++|+++|+| +|..||+||||+.
T Consensus 181 ----k~Gv-P~q~iD~~aL~GDsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 181 ----KSGS-AEIDCMTKILKGDKKDNVASVKVRSDF 211 (305)
T ss_dssp ----SCSC-HHHHHHHHHHHCBGGGTBCCTTSCTTH
T ss_pred ----HhCC-HHHHhhHHheeCccccCCCCCCcCCcc
Confidence 6787 999999999999 9999999999974
No 12
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=97.93 E-value=1.4e-05 Score=86.83 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=91.8
Q ss_pred EEEecCCCCccchhhHHHHHhhhhhhHHH-HHHHHhhcchHHHHHhhhhcccchH--HHHHHHHHHHHH-----------
Q psy11827 15 IMVFDGRHLPAKEATEEDRRKKRDSHKAK-AAELLILDRGSEAQSHLRQSVDVTH--KMALNVIQACRA----------- 80 (336)
Q Consensus 15 ifVFDG~~~p~K~~t~~~R~~~r~~~~~~-a~~~~~~g~~~~a~~~f~~~~~it~--~m~~~l~~~L~~----------- 80 (336)
++.+||..|-+|-....+||-+.....+. ...+.++|..-.-.+.|. +..||| +.+..+...|+.
T Consensus 82 yiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fd-sn~ITPGT~FM~~L~~~L~~~i~~k~~~d~~ 160 (1155)
T 3pie_A 82 YMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFD-SNAITPGTEFMAKLTENLKYFIHDKITNDTR 160 (1155)
T ss_pred EEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccc-cccccCCcHHHHHHHHHHHHHHHHHhhCCcC
Confidence 68999999988887665555433221111 122344453211112232 345665 445555544442
Q ss_pred -cCCceecC----ccchHHHHHHHHHc---------CCeEEEecCCCceEeecc----cE--EEEecCCCCC--------
Q psy11827 81 -RGVDCIVA----PFEADAQMAYLNIA---------GYADYVITEDSDLLVFGA----KK--IIYKLDLSGN-------- 132 (336)
Q Consensus 81 -~gV~~ivA----PyEADAQlA~L~~~---------g~vdaViT~DSDll~fg~----~~--vi~kl~~~g~-------- 132 (336)
.++.+|.+ |+|++.-+.-+.+. +..++|++.|+||+++|- ++ |++.-...+.
T Consensus 161 w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~ 240 (1155)
T 3pie_A 161 WQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTL 240 (1155)
T ss_pred ccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCccccccccc
Confidence 26778875 89999887766552 568999999999999983 22 3443111110
Q ss_pred ---e-eeeccccccccc--cC----C--cCCCCH----HHHHHHHHHhCCCCCCCCCCCCHH
Q psy11827 133 ---C-CFMDREKLPSAL--KM----P--LAKFTD----AKFRYMCILSGCDYWTGIKGMGLK 178 (336)
Q Consensus 133 ---~-~~i~~~~l~~~~--~~----~--~~~lt~----~qf~~~~iL~GcDy~~~ipgiG~k 178 (336)
. ..+...-|.+-+ .+ . ...++. +.|+.||.|+|+||+|++|.+.+.
T Consensus 241 ~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~ 302 (1155)
T 3pie_A 241 ETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLK 302 (1155)
T ss_pred ccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCcC
Confidence 0 112211111100 00 0 123343 357779999999999999998754
No 13
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.93 E-value=2.1e-05 Score=85.99 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=90.3
Q ss_pred EEEEEecCCCCccchhhHHHHHhhhhhhHHH-HHHHHhhcchHHHHHhhhhcccchH--HHHHHHHHHHHH---------
Q psy11827 13 KVIMVFDGRHLPAKEATEEDRRKKRDSHKAK-AAELLILDRGSEAQSHLRQSVDVTH--KMALNVIQACRA--------- 80 (336)
Q Consensus 13 ~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~-a~~~~~~g~~~~a~~~f~~~~~it~--~m~~~l~~~L~~--------- 80 (336)
..++-+||..|-+|-.+..+||-+.....+. ..++...|...+ .+.|. +..||| +.+..+.+.|+.
T Consensus 80 ll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~-~~~fd-sn~ITPGT~FM~~l~~~L~~~i~~k~~~d 157 (1140)
T 2y35_A 80 LFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELRE-HERFD-SNCITPGTEFMVRLQEGLRAFLKTKISTD 157 (1140)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCC-SGGGSTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccc-cccCC-ccccCCCcHHHHHHHHHHHHHHHHHhccC
Confidence 3578999999988886665555432221111 112233443222 22342 345666 444444333332
Q ss_pred ---cCCceecC----ccchHHHHHHHHH---------cCCeEEEecCCCceEeecc----cE--EEEecCCCCC------
Q psy11827 81 ---RGVDCIVA----PFEADAQMAYLNI---------AGYADYVITEDSDLLVFGA----KK--IIYKLDLSGN------ 132 (336)
Q Consensus 81 ---~gV~~ivA----PyEADAQlA~L~~---------~g~vdaViT~DSDll~fg~----~~--vi~kl~~~g~------ 132 (336)
.++.+|++ |+|++.-+-.+.+ .+.-++|++.|+||+++|- ++ |++.-...|.
T Consensus 158 ~~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~ 237 (1140)
T 2y35_A 158 PLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTS 237 (1140)
T ss_dssp GGGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCC
T ss_pred ccccceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccccc
Confidence 36888875 8999987776555 2578999999999999982 32 3443221211
Q ss_pred ----ee-eeccccccc----c---ccCCcCCCCH----HHHHHHHHHhCCCCCCCCCCCCH
Q psy11827 133 ----CC-FMDREKLPS----A---LKMPLAKFTD----AKFRYMCILSGCDYWTGIKGMGL 177 (336)
Q Consensus 133 ----~~-~i~~~~l~~----~---~~~~~~~lt~----~qf~~~~iL~GcDy~~~ipgiG~ 177 (336)
.+ .++...+.+ . +......++. +.|+.||.|+|+||+|++|++.+
T Consensus 238 ~~~~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I 298 (1140)
T 2y35_A 238 VEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298 (1140)
T ss_dssp GGGCEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCT
T ss_pred ccccceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCcccc
Confidence 11 121111111 0 0011234453 46778999999999999999864
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=97.90 E-value=0.00011 Score=77.84 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=101.6
Q ss_pred EEEecCCCCccchhhHHHHHhhhhhhHHHH--------HHHHhhcchH--HH--HHhhhhcccchH--HHHHHHHHHHHH
Q psy11827 15 IMVFDGRHLPAKEATEEDRRKKRDSHKAKA--------AELLILDRGS--EA--QSHLRQSVDVTH--KMALNVIQACRA 80 (336)
Q Consensus 15 ifVFDG~~~p~K~~t~~~R~~~r~~~~~~a--------~~~~~~g~~~--~a--~~~f~~~~~it~--~m~~~l~~~L~~ 80 (336)
++.+||..|-+|-.+..+||-+.....+.+ ..+..+|... +. .+.| .+..||| +.+..|...|+.
T Consensus 103 y~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~f-DsN~ITPGT~FM~~L~~~L~~ 181 (899)
T 3fqd_A 103 FIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSW-DSNCITPGTPFMDTLAKSLRY 181 (899)
T ss_dssp EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHSCCCC-CGGGSSTTSHHHHHHHHHHHH
T ss_pred EEeecCCCCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCccccccccCC-CcCccCCccHHHHHHHHHHHH
Confidence 688999999898877666654432211111 1122334221 10 1122 1345676 555555554442
Q ss_pred ------------cCCceecC----ccchHHHHHHHHHc---------CCeEEEecCCCceEeecc----c--EEEEecCC
Q psy11827 81 ------------RGVDCIVA----PFEADAQMAYLNIA---------GYADYVITEDSDLLVFGA----K--KIIYKLDL 129 (336)
Q Consensus 81 ------------~gV~~ivA----PyEADAQlA~L~~~---------g~vdaViT~DSDll~fg~----~--~vi~kl~~ 129 (336)
.++.+|++ |+|++.-+.-+.+. +..++|++.|+||+++|- + .|++.--.
T Consensus 182 ~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~ 261 (899)
T 3fqd_A 182 YIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVF 261 (899)
T ss_dssp HHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC
T ss_pred HHHHHhhcCcccccceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecc
Confidence 37788875 89999888776652 578999999999999983 2 34443211
Q ss_pred CCC---------e--------------------e-eecc----ccccccccCC--cCCCCH----HHHHHHHHHhCCCCC
Q psy11827 130 SGN---------C--------------------C-FMDR----EKLPSALKMP--LAKFTD----AKFRYMCILSGCDYW 169 (336)
Q Consensus 130 ~g~---------~--------------------~-~i~~----~~l~~~~~~~--~~~lt~----~qf~~~~iL~GcDy~ 169 (336)
.+. | + .+.. +.|..-+.+. ...++. +.|+.||.|+|+||+
T Consensus 262 ~~~~q~~~~~~~~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFL 341 (899)
T 3fqd_A 262 FQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFL 341 (899)
T ss_dssp ---------CTTTTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSS
T ss_pred cCcCccccchhhhccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccC
Confidence 110 0 0 1111 1111111111 123444 478889999999999
Q ss_pred CCCCCCCHH-HHHHHHHHcCCCcHHHHHHHHhhhcc
Q psy11827 170 TGIKGMGLK-KAKDYVFSIMDPDFENALRKINVYGK 204 (336)
Q Consensus 170 ~~ipgiG~k-tA~kli~~~~~~si~~vl~~~~~~~k 204 (336)
|++|.+.+. .|+.++-.. ..+++.++..|+.
T Consensus 342 PhlP~l~I~egaid~L~~~----Yk~~l~~~~gYlt 373 (899)
T 3fqd_A 342 PHLPSLDIRDGAVERLTEI----WRASLPHMGGYLT 373 (899)
T ss_dssp CCCTTCCGGGTHHHHHHHH----HHHHHHHHSSCSE
T ss_pred CCCCccCcCCChHHHHHHH----HHHHHHHcCCeee
Confidence 999988653 344443321 1234455555553
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.23 E-value=0.17 Score=36.34 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENAL 196 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl 196 (336)
..|||||++++..|++.|+ |+.++.
T Consensus 7 ~~IpGIG~kr~~~LL~~Fg--s~~~i~ 31 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVK--NIAELA 31 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCS--SHHHHH
T ss_pred HcCCCCCHHHHHHHHHHcC--CHHHHH
Confidence 4799999999999999998 566554
No 16
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=89.52 E-value=0.3 Score=37.28 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENALRK 198 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl~~ 198 (336)
.|||||++++..|++.|+ |+.++...
T Consensus 22 ~IpGIG~kr~~~LL~~Fg--Sl~~i~~A 47 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVK--NIAELAAL 47 (84)
T ss_dssp TCSSCCHHHHHHHHHHSS--CHHHHHHS
T ss_pred hCCCCCHHHHHHHHHHcC--CHHHHHHC
Confidence 799999999999999998 56665543
No 17
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=84.92 E-value=0.37 Score=35.65 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRK 198 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~ 198 (336)
.+|||||+++|.+|++.|+ +++.++..
T Consensus 27 ~~I~gIG~~~A~~Ll~~fg--sl~~l~~a 53 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMG--GLQGLRNA 53 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHS--CHHHHHHC
T ss_pred hcCCCCCHHHHHHHHHHcC--CHHHHHHC
Confidence 4799999999999999997 46665543
No 18
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=84.75 E-value=0.8 Score=34.62 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRK 198 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~ 198 (336)
.+|||||+++|.+|++.++ ++..++..
T Consensus 22 ~~IpgIG~~~A~~Ll~~fg--sl~~l~~a 48 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFG--SLEQLIAA 48 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTC--BHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHCC--CHHHHHhC
Confidence 4799999999999999997 56665543
No 19
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=83.92 E-value=0.89 Score=32.73 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRK 198 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~ 198 (336)
.+|||||+++|.+|+..|+ ++..++..
T Consensus 17 ~~i~giG~~~a~~Ll~~fg--s~~~l~~a 43 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFG--SVERVFTA 43 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHC--SHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcC--CHHHHHhC
Confidence 4799999999999999997 46666543
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=81.20 E-value=1.1 Score=34.00 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALR 197 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~ 197 (336)
.+|||||+++|.+|+..++ ++..++.
T Consensus 35 ~~IpgIG~~~A~~Ll~~fg--s~~~l~~ 60 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTFG--SLEQLIA 60 (91)
T ss_dssp TTSTTCCHHHHHHHHHHHS--SHHHHHS
T ss_pred HcCCCCCHHHHHHHHHHCC--CHHHHHh
Confidence 3799999999999999997 4665543
No 21
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=75.73 E-value=1.5 Score=39.05 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=25.3
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy11827 149 LAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 189 (336)
Q Consensus 149 ~~~lt~~qf~~~~iL~GcDy~~~ipgiG~ktA~kli~~~~~ 189 (336)
.+||....=+.+..++. +|+|||||+|..++..++.
T Consensus 75 LyGF~~~~Er~lf~~L~-----sv~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 75 LYGFPDGETRDLFLTLL-----SVSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp EEEESSHHHHHHHHHHH-----TSTTCCHHHHHHHHHHSCH
T ss_pred eEecCcHHHHHHHHHhc-----CcCCcCHHHHHHHHHhCCH
Confidence 56775444444444222 3999999999999999874
No 22
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=74.14 E-value=1.4 Score=38.48 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHcCC
Q psy11827 171 GIKGMGLKKAKDYVFSIMD 189 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~ 189 (336)
+|+|||||+|..++..++.
T Consensus 76 ~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPP 94 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCH
T ss_pred cCCCcCHHHHHHHHHhCCh
Confidence 5999999999999999974
No 23
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=72.67 E-value=1.9 Score=38.71 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENA 195 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~v 195 (336)
.+|||||+++|.+|++.|+ +++++
T Consensus 171 dgIpGIG~k~ak~Ll~~Fg--Sl~~i 194 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFG--SLENI 194 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHC--SHHHH
T ss_pred cCCCCcCHHHHHHHHHHcC--CHHHH
Confidence 6899999999999999998 56554
No 24
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=69.44 E-value=5.4 Score=35.47 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCCcee
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~~~~ 240 (336)
..+||||+|+|.++.-.- +..+++..+.+-+|....+..+.+|..-+.+.
T Consensus 29 ~~LPGIG~KsA~RlA~hL---------------------L~~~~~~~~~La~al~~~~~~i~~C~~C~nlt 78 (212)
T 3vdp_A 29 SKLPGIGPKTAQRLAFFI---------------------INMPLDEVRSLSQAIIEAKEKLRYCKICFNIT 78 (212)
T ss_dssp HTSTTCCHHHHHHHHHHH---------------------TTSCHHHHHHHHHHHHHHHHHCEECTTTCCEE
T ss_pred HHCCCCCHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHHHhCCcCCCCCCCC
Confidence 379999999999987431 12456666777777777777777776555543
No 25
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=69.19 E-value=1.5 Score=38.68 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHHcCC
Q psy11827 171 GIKGMGLKKAKDYVFSIMD 189 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~ 189 (336)
+|+|||+|+|..++..++.
T Consensus 77 ~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCH
T ss_pred cCCCcCHHHHHHHHhhCCh
Confidence 4999999999999999974
No 26
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=65.69 E-value=6.8 Score=35.15 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCCce
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEV 239 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~~~ 239 (336)
..+||||+|+|.++.-.- +..+++..+.+-+|....+..+.+|..-+.+
T Consensus 15 ~~LPGIG~KSA~RlA~hL---------------------L~~~~~~~~~La~al~~~~~~i~~C~~C~nl 63 (228)
T 1vdd_A 15 SRLPGIGPKSAQRLAFHL---------------------FEQPREDIERLASALLEAKRDLHVCPICFNI 63 (228)
T ss_dssp HTSTTCCHHHHHHHHHHH---------------------SSSCHHHHHHHHHHHHHHHHHCEECSSSCCE
T ss_pred hHCCCCCHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHHhcCeEcCCCCCC
Confidence 379999999999987531 1245566666777777666677777655554
No 27
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=61.31 E-value=1.7 Score=39.10 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENAL 196 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl 196 (336)
.+|||||+++|.+|++.|+ |++++.
T Consensus 176 ~~IpGIG~k~ak~Ll~~FG--Sl~~i~ 200 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFG--SVKKMK 200 (226)
T ss_dssp ---------------------------
T ss_pred cccCCCCHHHHHHHHHHhC--CHHHHH
Confidence 5899999999999999997 455543
No 28
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=60.49 E-value=3.2 Score=30.10 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHHHcC
Q psy11827 170 TGIKGMGLKKAKDYVFSIM 188 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~ 188 (336)
..+||||+++|.+++...+
T Consensus 30 ~~ipGIG~~~A~~Il~~r~ 48 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGRP 48 (75)
T ss_dssp TTSTTCCHHHHHHHHHTCC
T ss_pred HhCCCCCHHHHHHHHHHcc
Confidence 3689999999999998764
No 29
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=59.95 E-value=4.9 Score=35.24 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENAL 196 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl 196 (336)
+|||||+++|.+|++.|+ ++.+++
T Consensus 166 ~i~gVg~~~a~~Ll~~fg--s~~~l~ 189 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFG--SLERFF 189 (219)
T ss_dssp TSTTCCHHHHHHHHHHHS--SHHHHT
T ss_pred cCCCCCHHHHHHHHHHcC--CHHHHH
Confidence 799999999999999998 455543
No 30
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=55.14 E-value=8 Score=38.10 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENALR 197 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl~ 197 (336)
+|||||+.+|.+|+.+|| +++++..
T Consensus 472 AIaGIGp~tAeRLLEkFG--SVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYG--GYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHT--SHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhc--CHHHHHh
Confidence 799999999999999998 5666544
No 31
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=50.45 E-value=20 Score=27.51 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=30.2
Q ss_pred hHHHHHHHHhhcchHHHHHhhhhcccchH---HHHHHHHHHHHHcC
Q psy11827 40 HKAKAAELLILDRGSEAQSHLRQSVDVTH---KMALNVIQACRARG 82 (336)
Q Consensus 40 ~~~~a~~~~~~g~~~~a~~~f~~~~~it~---~m~~~l~~~L~~~g 82 (336)
...+|..+++.|+.++|.++|.+++.+.| .....+-.++..+|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc
Confidence 44678889999999999999999987765 23333334444444
No 32
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=47.26 E-value=14 Score=34.82 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENALR 197 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl~ 197 (336)
.|||||+|||.++..+ +-.+++.+..
T Consensus 100 ~v~GiG~k~a~~l~~~-Gi~tledL~~ 125 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQ-GFRSLEDIRS 125 (335)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHHH
T ss_pred cCCCcCHHHHHHHHHc-CCCCHHHHHH
Confidence 7999999999999988 7667777654
No 33
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=44.82 E-value=15 Score=35.30 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENALR 197 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl~ 197 (336)
+|||||+|||.++.++ |-.+++.+.+
T Consensus 125 ~I~GvGpk~a~~ly~~-Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRM-GFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHc-CCCcHHHHHh
Confidence 7999999999999988 7667777654
No 34
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=43.63 E-value=6.4 Score=32.50 Aligned_cols=16 Identities=25% Similarity=0.085 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFS 186 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~ 186 (336)
.+||||+++|.++|+.
T Consensus 67 ~LpGiGp~~A~~II~~ 82 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKN 82 (134)
T ss_dssp GSTTCTHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHc
Confidence 5999999999999953
No 35
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=43.45 E-value=19 Score=36.39 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENALRKI 199 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl~~~ 199 (336)
+|+|||||+|.+++...+-.+++.+...+
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 79999999999998874434555554443
No 36
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=43.03 E-value=14 Score=34.75 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALR 197 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~ 197 (336)
-.|||||++||.++..+ +-.+++.+..
T Consensus 101 ~~V~GiGpk~a~~l~~~-Gi~tledL~~ 127 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVDE-GIKTLEDLRK 127 (335)
T ss_dssp TTSTTCCHHHHHHHHHT-TCCSHHHHHT
T ss_pred hCCCCCCHHHHHHHHHc-CCCCHHHHHH
Confidence 47999999999999988 7667777655
No 37
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=42.48 E-value=16 Score=34.89 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCcHHHHH
Q psy11827 171 GIKGMGLKKAKDYVFSIMDPDFENAL 196 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~~~si~~vl 196 (336)
+|||||+|||.++.++ |-.+++.+.
T Consensus 106 ~I~GvG~kta~~l~~~-Gi~tledL~ 130 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQE-GLRTLDELR 130 (360)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHc-CCCCHHHHH
Confidence 7999999999999988 766777654
No 38
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=42.32 E-value=19 Score=36.33 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRK 198 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~ 198 (336)
-+|+|||+|+|.+++.. +-.+++.+...
T Consensus 100 ~~v~GVGpk~A~~i~~~-G~~s~edL~~a 127 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLA-GIDSLERLREA 127 (578)
T ss_dssp TTSTTCCHHHHHHHHHT-TCCSHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHc-CCCCHHHHHHH
Confidence 48999999999999987 43456655554
No 39
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=42.17 E-value=9.3 Score=33.88 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHhC-CCCCCCCCCCCHHHHHHHHHHcC
Q psy11827 152 FTDAKFRYMCILSG-CDYWTGIKGMGLKKAKDYVFSIM 188 (336)
Q Consensus 152 lt~~qf~~~~iL~G-cDy~~~ipgiG~ktA~kli~~~~ 188 (336)
++.+.|... |+.+ -+.+..+||||.|||-+++....
T Consensus 108 ~~~~~l~~a-I~~~d~~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 108 HDAPALRQV-LADGNVAALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp SCHHHHHHH-HHTTCHHHHHTSTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHhCCHHHHhhCCCCCHHHHHHHHHHHH
Confidence 556665432 3333 34446899999999999998765
No 40
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=40.57 E-value=36 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcchHHHHHhhhhcccchH
Q psy11827 41 KAKAAELLILDRGSEAQSHLRQSVDVTH 68 (336)
Q Consensus 41 ~~~a~~~~~~g~~~~a~~~f~~~~~it~ 68 (336)
...|..+++.|+.++|.++|.+++.+.|
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p 39 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDP 39 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3567788999999999999999987766
No 41
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=39.07 E-value=23 Score=31.19 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 73 NVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 73 ~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
.+++.++..|+++.+-.-.-.+++.+|...| ||+|+|++-+.+
T Consensus 198 ~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~G-vdgI~TD~p~~~ 240 (247)
T 2otd_A 198 ARVMQLKDAGLRILVYTVNKPQHAAELLRWG-VDCICTDAIDVI 240 (247)
T ss_dssp HHHHHHHHTTCEEEEECCCCHHHHHHHHHHT-CSEEEESCTTTS
T ss_pred HHHHHHHHCCCEEEEEccCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 4556677788877765433345566666666 778888777654
No 42
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=36.12 E-value=17 Score=31.54 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHcC
Q psy11827 167 DYWTGIKGMGLKKAKDYVFSIM 188 (336)
Q Consensus 167 Dy~~~ipgiG~ktA~kli~~~~ 188 (336)
+.+..+||||.|+|.+++....
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 4456899999999999987654
No 43
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=35.43 E-value=26 Score=31.20 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.-.-.+++.+|...| ||+|+|+.-+.+
T Consensus 226 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~l~~~G-vdgIiTD~P~~~ 269 (272)
T 3ch0_A 226 KKDIDAAHKLGMRVIPWTVNTKEEIETLISLG-VDGIITDYPDLF 269 (272)
T ss_dssp HHHHHHHHHTTCEECCBCCCSHHHHHHHHHHT-CSEEEESCGGGG
T ss_pred HHHHHHHHHcCCEEEEeccCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 45667788899888776544445667777777 889999877654
No 44
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=34.06 E-value=50 Score=27.26 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCceecCc----------cchHHHHHH----HHHcCCeEEEecCCCceEe
Q psy11827 69 KMALNVIQACRARGVDCIVAP----------FEADAQMAY----LNIAGYADYVITEDSDLLV 117 (336)
Q Consensus 69 ~m~~~l~~~L~~~gV~~ivAP----------yEADAQlA~----L~~~g~vdaViT~DSDll~ 117 (336)
.....+++.|+..|+.++.-| ..+|-.|+- ++..--.-.++|+|||+.-
T Consensus 61 ~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~p 123 (165)
T 2qip_A 61 PKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSL 123 (165)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHH
T ss_pred hhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHH
Confidence 345668889999999887655 245655553 2323333456899999763
No 45
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=33.84 E-value=54 Score=25.50 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=27.0
Q ss_pred HHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccc
Q psy11827 33 RRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66 (336)
Q Consensus 33 R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~i 66 (336)
|.+.-..-...|..++..|+.++|..+|.+++.+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444455667888999999999999999998876
No 46
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=32.25 E-value=16 Score=28.27 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFS 186 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~ 186 (336)
..+||||+++|.++|..
T Consensus 29 ~~lpGIG~~~A~~IV~~ 45 (97)
T 3arc_U 29 IQYRGLYPTLAKLIVKN 45 (97)
T ss_dssp GGSTTCTTHHHHHHHHH
T ss_pred hHCCCCCHHHHHHHHHc
Confidence 36999999999999984
No 47
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=32.06 E-value=63 Score=27.05 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHHHcCCc-----eecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARGVD-----CIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~gV~-----~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+..|+. .+.-| ||-=..+..|+++|-.|+|+
T Consensus 25 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1rvv_A 25 FITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAII 76 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 56778888899999999874 44456 67666667788888899987
No 48
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=31.14 E-value=56 Score=27.29 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHhhcchHHHHHhhhhcccchHH
Q psy11827 36 KRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHK 69 (336)
Q Consensus 36 ~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~ 69 (336)
........|..+...|+.++|..+|.+++.+.|.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 3445567788889999999999999999888776
No 49
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=30.95 E-value=50 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHHHcC-C-----ceecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARG-V-----DCIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~g-V-----~~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+..| + ..+.-| ||-=..+..|.++|..|+|+
T Consensus 25 ~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 77 (156)
T 3nq4_A 25 FINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVV 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 567788888999999999 5 444445 77667777788888889987
No 50
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=30.82 E-value=41 Score=28.34 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHHHcCCc-----eecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARGVD-----CIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~gV~-----~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+..|+. .+.-| ||-=-.+..|+++|-.|+|+
T Consensus 23 ~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 74 (158)
T 1di0_A 23 DIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 56778888889999998863 44456 67666667788999899987
No 51
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.73 E-value=38 Score=24.83 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHhhcchHHHHHhhhhcccchH
Q psy11827 38 DSHKAKAAELLILDRGSEAQSHLRQSVDVTH 68 (336)
Q Consensus 38 ~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~ 68 (336)
.+..+.+.++..+|+.++|..+|.+++.|.+
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3446788899999999999999999987753
No 52
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=30.58 E-value=70 Score=26.93 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHH-cCCc-----eecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRA-RGVD-----CIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~-~gV~-----~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+. .|+. .+.-| ||-=..+..|+++|..|+||
T Consensus 30 ~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 82 (159)
T 1kz1_A 30 QAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVI 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 5677888888899998 8864 55556 67666667788888889987
No 53
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=30.58 E-value=39 Score=30.98 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhh
Q psy11827 170 TGIKGMGLKKAKDYVFSIMDPDFENALRKINV 201 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~ 201 (336)
-.||||++++|..++.+|+ ++..++.++..
T Consensus 240 ~~IpGVs~~~A~~I~~~yp--Tp~~L~~Ay~~ 269 (311)
T 2ziu_A 240 MQISGVSGDKAAAVLEHYS--TVSSLLQAYDK 269 (311)
T ss_dssp TTBTTCCHHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHCC--CHHHHHHHHHh
Confidence 3799999999999999997 56777666643
No 54
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=30.49 E-value=26 Score=30.31 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCcee---cCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEE
Q psy11827 70 MALNVIQACRARGVDCI---VAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKII 124 (336)
Q Consensus 70 m~~~l~~~L~~~gV~~i---vAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi 124 (336)
-..-+.+.|++.|+++. ...+..+.-...|.+....+||++ -+|.+..|+-+.+
T Consensus 140 R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al 196 (277)
T 3e61_A 140 RVQGIKYILDQQRIDYKMLEATLLDNDKKFIDLIKELSIDSIIC-SNDLLAINVLGIV 196 (277)
T ss_dssp HHHHHHHHHHC---CEEEEEGGGGGSHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceecCCCCHHHHHHHhhcCCCCCEEEE-CCcHHHHHHHHHH
Confidence 34457788888898764 223332222222777777899995 4677777764433
No 55
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=30.33 E-value=28 Score=30.25 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.-.-..++.+|...| ||+|+|++-+.+
T Consensus 176 ~~~v~~~~~~G~~v~~wtvn~~~~~~~l~~~G-vdgI~TD~p~~~ 219 (224)
T 1vd6_A 176 EEAVAGWRKRGLFVVAWTVNEEGEARRLLALG-LDGLIGDRPEVL 219 (224)
T ss_dssp HHHHHHHHHTTCEEEEECCCCHHHHHHHHHTT-CSEEEESCHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcC-CCEEEcCCHHHH
Confidence 44667778889888876544455677777777 889998776543
No 56
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=30.20 E-value=20 Score=31.63 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHhC---CC--CCCCCCCCCHHHHHHHHHHc--CC-CcHHHHHHHH
Q psy11827 153 TDAKFRYMCILSG---CD--YWTGIKGMGLKKAKDYVFSI--MD-PDFENALRKI 199 (336)
Q Consensus 153 t~~qf~~~~iL~G---cD--y~~~ipgiG~ktA~kli~~~--~~-~si~~vl~~~ 199 (336)
.++.|+++.--++ .+ =+..+||||+++|.++|... +. .|++.+...+
T Consensus 113 ~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV 167 (205)
T 2i5h_A 113 DEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV 167 (205)
T ss_dssp THHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred chhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 3566777643333 12 22379999999999999743 11 2555554434
No 57
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=30.16 E-value=26 Score=30.98 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.-.-.+++.+|.+.| ||+|+|++-+.+
T Consensus 201 ~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~G-vdgIiTD~P~~~ 244 (252)
T 2pz0_A 201 PELVEGCKKNGVKLFPWTVDRKEDMERMIKAG-VDGIITDDPETL 244 (252)
T ss_dssp HHHHHHHHHTTCEECCBCCCSHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHcC-CCEEEcCCHHHH
Confidence 45667778899888876544455667777777 889998876644
No 58
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=29.99 E-value=59 Score=27.27 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHcCC----ceecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARGV----DCIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~gV----~~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+..|+ ..+.-| ||-=-.+..|+++|-.|+|+
T Consensus 26 ~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (156)
T 1c2y_A 26 FVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 76 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 5677888889999999986 344456 66556667788888899987
No 59
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.30 E-value=22 Score=31.44 Aligned_cols=117 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred hHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHc
Q psy11827 2 KYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRAR 81 (336)
Q Consensus 2 k~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~ 81 (336)
..++.|.+.|| |++++|............-.-..++....-+..+++.|...-+.=.-........+-..-+.+.|++.
T Consensus 82 ~~~~~l~~~~i-PvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~ 160 (295)
T 3hcw_A 82 PIKQMLIDESM-PFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQF 160 (295)
T ss_dssp HHHHHHHHTTC-CEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-CEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHc
Q ss_pred CCceec-----CccchHHHHHHHHHcC----CeEEEecCCCceEeecc
Q psy11827 82 GVDCIV-----APFEADAQMAYLNIAG----YADYVITEDSDLLVFGA 120 (336)
Q Consensus 82 gV~~iv-----APyEADAQlA~L~~~g----~vdaViT~DSDll~fg~ 120 (336)
|+++.+ .+.++...+..|.+.+ ..+||+ --+|.+.+|+
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~ 207 (295)
T 3hcw_A 161 NLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAI 207 (295)
T ss_dssp TCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHH
T ss_pred CCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHH
No 60
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=29.28 E-value=65 Score=26.29 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=26.7
Q ss_pred HHHHH-cCCceec--C-ccchHHHHHHHHHcCCeEEEe
Q psy11827 76 QACRA-RGVDCIV--A-PFEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 76 ~~L~~-~gV~~iv--A-PyEADAQlA~L~~~g~vdaVi 109 (336)
++|++ .|+++-. . |.|.|.|+.-+.++|.+|.||
T Consensus 42 ~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVI 79 (134)
T 2xw6_A 42 RRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVI 79 (134)
T ss_dssp HHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEE
Confidence 34555 7877753 3 448999999999999999998
No 61
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=28.78 E-value=29 Score=30.77 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=20.6
Q ss_pred HHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCce
Q psy11827 74 VIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDL 115 (336)
Q Consensus 74 l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDl 115 (336)
+++.++..|+++.+-.-.-.+++..|...| ||+|+|++-|.
T Consensus 196 ~v~~~~~~G~~V~~WTvn~~~~~~~l~~~G-VDgIiTD~P~~ 236 (250)
T 3ks6_A 196 LMAQVQAAGLDFGCWAAHTPSQITKALDLG-VKVFTTDRPTL 236 (250)
T ss_dssp HHHHHHHTTCEEEEECCCSHHHHHHHHHHT-CSEEEESCHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHcC-CCEEEcCCHHH
Confidence 444555566665553322233444555554 56666655443
No 62
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=28.68 E-value=31 Score=30.54 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCce
Q psy11827 73 NVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDL 115 (336)
Q Consensus 73 ~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDl 115 (336)
.+++.+++.|+++.+-.-.-..++..|...| ||+|+|++-|.
T Consensus 201 ~~v~~~~~~G~~v~~WTvn~~~~~~~l~~~G-VdgIiTD~P~~ 242 (252)
T 3qvq_A 201 QQVSDIKAAGYKVLAFTINDESLALKLYNQG-LDAVFSDYPQK 242 (252)
T ss_dssp HHHHHHHHTTCEEEEECCCCHHHHHHHHHTT-CCEEEESSHHH
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHcC-CCEEEeCCHHH
Confidence 3455667777777664433344555666665 67777766554
No 63
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=28.24 E-value=68 Score=26.80 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHHHHcCCc-----eecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARGVD-----CIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~gV~-----~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+..|+. .+.-| ||-=..+..|+++|-.|+|+
T Consensus 25 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1hqk_A 25 ALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVI 76 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 56778888899999999874 44456 67666667788888899987
No 64
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=28.07 E-value=46 Score=27.96 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHHcCCc-----eecCc--cchHHHHHHHHHcCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARGVD-----CIVAP--FEADAQMAYLNIAGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~gV~-----~ivAP--yEADAQlA~L~~~g~vdaVi 109 (336)
.|+..|..-.++.|+..|+. .+.-| ||-=-.+..|+++|-.|+||
T Consensus 24 ~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 75 (157)
T 2obx_A 24 DIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVL 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 56778888899999998864 44456 67666667788888899987
No 65
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=27.12 E-value=32 Score=31.09 Aligned_cols=44 Identities=23% Similarity=0.116 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.-.-.+++..|...| ||+|+|++-|.+
T Consensus 231 ~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~G-VdgIiTD~P~~~ 274 (287)
T 2oog_A 231 EQNTHHLKDLGFIVHPYTVNEKADMLRLNKYG-VDGVFTNFADKY 274 (287)
T ss_dssp HHHHHHHHHTTCEECCBCCCSHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 34667788999988876544455677777777 899999877654
No 66
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.88 E-value=85 Score=22.98 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=23.3
Q ss_pred hHHHHHHHHhhcchHHHHHhhhhcccchH
Q psy11827 40 HKAKAAELLILDRGSEAQSHLRQSVDVTH 68 (336)
Q Consensus 40 ~~~~a~~~~~~g~~~~a~~~f~~~~~it~ 68 (336)
....|..++..|+.++|..+|.+++.+.|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 35 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP 35 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34567788899999999999998877654
No 67
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=26.84 E-value=63 Score=23.24 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=12.3
Q ss_pred HHHHhhcchHHHHHhhhhcccc
Q psy11827 45 AELLILDRGSEAQSHLRQSVDV 66 (336)
Q Consensus 45 ~~~~~~g~~~~a~~~f~~~~~i 66 (336)
..+...|+.++|.+.|.+++.+
T Consensus 49 ~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 49 KLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 3344556666666666665544
No 68
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=26.80 E-value=32 Score=30.41 Aligned_cols=44 Identities=9% Similarity=0.008 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCceecCcc----chHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPF----EADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPy----EADAQlA~L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.- .-.+++.+|...| ||+|+|.+-+.+
T Consensus 202 ~~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l~~~G-vdgI~TD~p~~~ 249 (258)
T 2o55_A 202 KEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKCLELQ-VDLICSNYPFGL 249 (258)
T ss_dssp HHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHHCCCEEEEeeCCCCCCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 3466677788888776544 4445666677666 788888766543
No 69
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=26.72 E-value=40 Score=29.74 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCceecCccchHHHHHH-HHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPFEADAQMAY-LNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPyEADAQlA~-L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.-.-.+++.. |...| ||+|+|++-+.+
T Consensus 184 ~~~v~~~~~~G~~v~~wTvn~~~~~~~~l~~~G-vdgIiTD~p~~~ 228 (248)
T 1zcc_A 184 PGIIEASRKAGLEIMVYYGGDDMAVHREIATSD-VDYINLDRPDLF 228 (248)
T ss_dssp HHHHHHHHHHTCEEEEECCCCCHHHHHHHHHSS-CSEEEESCHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcC-CCEEEECCHHHH
Confidence 567778888898888754333345556 66666 889998776654
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=26.63 E-value=22 Score=31.13 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCCCCCCCHHHHHHHHHHc
Q psy11827 168 YWTGIKGMGLKKAKDYVFSI 187 (336)
Q Consensus 168 y~~~ipgiG~ktA~kli~~~ 187 (336)
.+..+||||.|+|.+++...
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 44589999999999998754
No 71
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=25.96 E-value=80 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcchHHHHHhhhhcccchH
Q psy11827 41 KAKAAELLILDRGSEAQSHLRQSVDVTH 68 (336)
Q Consensus 41 ~~~a~~~~~~g~~~~a~~~f~~~~~it~ 68 (336)
...|..++..|+.++|.++|.+++.+.|
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p 35 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQP 35 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456667778888888888888766654
No 72
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=25.65 E-value=37 Score=31.05 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 73 NVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 73 ~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
.+++.+++.|+++.+-.-.-.+++..|...| ||+|+|++-|.+
T Consensus 259 ~~v~~~~~~Gl~V~~WTVn~~~~~~~l~~~G-VDgIiTD~P~~~ 301 (313)
T 3l12_A 259 ELVAEAHDLGLIVLTWTVNEPEDIRRMATTG-VDGIVTDYPGRT 301 (313)
T ss_dssp HHHHHHHHTTCEEEEBCCCSHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 4556667778877765433345566666666 778887766543
No 73
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=25.45 E-value=32 Score=30.25 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 73 NVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 73 ~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
.+++.+++.|+++.+-.-.-.+++..|...| ||+|+|++-|.+
T Consensus 187 ~~v~~~~~~G~~v~~WTVn~~~~~~~l~~~G-VdgIiTD~P~~~ 229 (238)
T 3no3_A 187 DWVKDCKVLGMTSNVWTVDDPKLMEEMIDMG-VDFITTDLPEET 229 (238)
T ss_dssp THHHHHHHTTCEEEEECCCSHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHcC-CCEEECCCHHHH
Confidence 4667788889888776544455677777777 889998776643
No 74
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=25.42 E-value=74 Score=22.83 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcchHHHHHhhhhcccchH---HHHHHHHHHHHHcC
Q psy11827 41 KAKAAELLILDRGSEAQSHLRQSVDVTH---KMALNVIQACRARG 82 (336)
Q Consensus 41 ~~~a~~~~~~g~~~~a~~~f~~~~~it~---~m~~~l~~~L~~~g 82 (336)
...|..++..|+.++|..+|.+++.+.| .....+-.++...|
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 55 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD 55 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 3456777889999999999999877655 22333444444444
No 75
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=25.08 E-value=15 Score=33.10 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHH-cCCCcHHHH
Q psy11827 169 WTGIKGMGLKKAKDYVFS-IMDPDFENA 195 (336)
Q Consensus 169 ~~~ipgiG~ktA~kli~~-~~~~si~~v 195 (336)
+..|||||+++|.+|+.. ++ +++.+
T Consensus 17 L~~IpGIGpk~a~~Ll~~gf~--sve~L 42 (241)
T 1vq8_Y 17 LTDISGVGPSKAESLREAGFE--SVEDV 42 (241)
T ss_dssp ----------------------------
T ss_pred HhcCCCCCHHHHHHHHHcCCC--CHHHH
Confidence 347999999999999987 43 45544
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=24.64 E-value=67 Score=25.22 Aligned_cols=42 Identities=7% Similarity=-0.046 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcchHHHHHhhhhcccchHH---HHHHHHHHHHHcC
Q psy11827 41 KAKAAELLILDRGSEAQSHLRQSVDVTHK---MALNVIQACRARG 82 (336)
Q Consensus 41 ~~~a~~~~~~g~~~~a~~~f~~~~~it~~---m~~~l~~~L~~~g 82 (336)
...|..+...|+.++|.++|.+++.+.|. ....+-.++...|
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 53 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG 53 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34566778899999999999999887663 2333444444444
No 77
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=24.17 E-value=82 Score=21.12 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=14.2
Q ss_pred HHHHHHhhcchHHHHHhhhhcccc
Q psy11827 43 KAAELLILDRGSEAQSHLRQSVDV 66 (336)
Q Consensus 43 ~a~~~~~~g~~~~a~~~f~~~~~i 66 (336)
.|..+...|+.++|..+|.+++.+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc
Confidence 344555666666666666665544
No 78
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=23.98 E-value=37 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=18.7
Q ss_pred HHHHHHHhhcchHHHHHhhhhcccchH
Q psy11827 42 AKAAELLILDRGSEAQSHLRQSVDVTH 68 (336)
Q Consensus 42 ~~a~~~~~~g~~~~a~~~f~~~~~it~ 68 (336)
..|..++..|+.++|.+.|.+++.+.|
T Consensus 52 ~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 52 NRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 455566777777777777777766654
No 79
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=23.93 E-value=37 Score=25.67 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHc
Q psy11827 170 TGIKGMGLKKAKDYVFSI 187 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~~ 187 (336)
..|||||+++|.+++...
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 369999999999999875
No 80
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=23.38 E-value=1.2e+02 Score=25.61 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHcCCc-----eecCc--cchHHHHHHHHH-----cCCeEEEe
Q psy11827 65 DVTHKMALNVIQACRARGVD-----CIVAP--FEADAQMAYLNI-----AGYADYVI 109 (336)
Q Consensus 65 ~it~~m~~~l~~~L~~~gV~-----~ivAP--yEADAQlA~L~~-----~g~vdaVi 109 (336)
.|+..|..-.++.|+..|+. .+.-| ||-=..+..|.+ +|-.|+||
T Consensus 29 ~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavI 85 (168)
T 1ejb_A 29 VIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVI 85 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEE
Confidence 56778888899999999874 33456 665555566666 67788887
No 81
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.01 E-value=84 Score=21.83 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=13.9
Q ss_pred HHHHHHHhhcchHHHHHhhhhcccc
Q psy11827 42 AKAAELLILDRGSEAQSHLRQSVDV 66 (336)
Q Consensus 42 ~~a~~~~~~g~~~~a~~~f~~~~~i 66 (336)
..|..++..|+.++|.+.|.+++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~ 29 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT 29 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666555444
No 82
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=21.95 E-value=41 Score=29.12 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy11827 170 TGIKGMGLKKAKDYVFS 186 (336)
Q Consensus 170 ~~ipgiG~ktA~kli~~ 186 (336)
-++||||++||--++.-
T Consensus 120 ~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 120 LNIKGIGMQEASHFLRN 136 (207)
T ss_dssp TTSTTCCHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHHH
Confidence 48999999999888764
No 83
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=21.83 E-value=33 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcc
Q psy11827 169 WTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGK 204 (336)
Q Consensus 169 ~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k 204 (336)
..-+||||++.+.+|..+- +.+...-+.+++-
T Consensus 20 V~evpGIG~~~~~~L~~~G----f~kAy~lLGqFL~ 51 (89)
T 1ci4_A 20 VGSLAGIGEVLGKKLEERG----FDKAYVVLGQFLV 51 (89)
T ss_dssp GGGSTTCCHHHHHHHHHTT----CCSHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHcC----ccHHHHHHHHHHH
Confidence 3469999999999999862 3445555666653
No 84
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.31 E-value=63 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHhhcchHHHHHhhhhcccch
Q psy11827 38 DSHKAKAAELLILDRGSEAQSHLRQSVDVT 67 (336)
Q Consensus 38 ~~~~~~a~~~~~~g~~~~a~~~f~~~~~it 67 (336)
.+..+.+.+++.+|+.+.|..||.+++.|.
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 344678889999999999999999988774
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=21.17 E-value=1e+02 Score=24.63 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhcchHHHHHhhhhcccchH---HHHHHHHHHHHHcC
Q psy11827 40 HKAKAAELLILDRGSEAQSHLRQSVDVTH---KMALNVIQACRARG 82 (336)
Q Consensus 40 ~~~~a~~~~~~g~~~~a~~~f~~~~~it~---~m~~~l~~~L~~~g 82 (336)
....|..++..|+.++|..+|.+++.+.| .....+-.++...|
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 34567778889999999999998887765 22333444444444
No 86
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=21.09 E-value=38 Score=29.67 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCceecCccchHHHHHHHHHcCCeEEEecCCCceE
Q psy11827 72 LNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116 (336)
Q Consensus 72 ~~l~~~L~~~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll 116 (336)
..+++.+++.|+++.+-.-.-..++.+|.+. ||+|+|++-+.+
T Consensus 188 ~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~--vdgIiTD~P~~~ 230 (234)
T 1o1z_A 188 VEVLRSFRKKGIVIFVWTLNDPEIYRKIRRE--IDGVITDEVELF 230 (234)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHGGG--CSEEEESCHHHH
T ss_pred HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHh--CCEEEcCCHHHH
Confidence 5677788999999887654444556667666 999999876643
No 87
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=21.02 E-value=96 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcchHHHHHhhhhcccchH
Q psy11827 41 KAKAAELLILDRGSEAQSHLRQSVDVTH 68 (336)
Q Consensus 41 ~~~a~~~~~~g~~~~a~~~f~~~~~it~ 68 (336)
...|..+++.|+.++|...|.+++.+.|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P 48 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP 48 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4456667777777777777777665544
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=20.86 E-value=1.6e+02 Score=23.50 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=28.0
Q ss_pred HHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccch
Q psy11827 31 EDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVT 67 (336)
Q Consensus 31 ~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it 67 (336)
..+.+.-......|..++..|+.++|.++|.+++.+.
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 68 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF 68 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344444555677888899999999999999887653
No 89
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.85 E-value=1.5e+02 Score=24.30 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcC---CceecCccchHHHHHHHHHcCCeEEEecCCCc
Q psy11827 68 HKMALNVIQACRARG---VDCIVAPFEADAQMAYLNIAGYADYVITEDSD 114 (336)
Q Consensus 68 ~~m~~~l~~~L~~~g---V~~ivAPyEADAQlA~L~~~g~vdaViT~DSD 114 (336)
...+..+++.|++.| +++++.-.-.....+.|.+.| +|+|++.+++
T Consensus 83 ~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G-~d~v~~~~~~ 131 (161)
T 2yxb_A 83 LHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLG-IREIFLPGTS 131 (161)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTT-CCEEECTTCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCC-CcEEECCCCC
Confidence 356778888888875 677775433333344566666 5898888875
No 90
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.41 E-value=3.3e+02 Score=21.63 Aligned_cols=61 Identities=13% Similarity=-0.022 Sum_probs=39.6
Q ss_pred hHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHcCCceec--CccchHHHHHHH
Q psy11827 29 TEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIV--APFEADAQMAYL 99 (336)
Q Consensus 29 t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~gV~~iv--APyEADAQlA~L 99 (336)
+..+...+.-+...+|..+-+.|+.++|.++|++. +..+.+..+|++-. ...+.+.....|
T Consensus 14 ~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~G----------I~eLe~Gl~I~~~~~~~~g~~we~Ar~l 76 (116)
T 2dl1_A 14 IIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQG----------IGHLLRGISISSKESEHTGPGWESARQM 76 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH----------HHHHHHHHSSCCCCTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH----------HHHHHHhccccccCCCCCChhHHHHHHH
Confidence 33344444455566777777789999999998753 45567888898874 335555444443
No 91
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=20.18 E-value=37 Score=29.88 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHHHcC
Q psy11827 171 GIKGMGLKKAKDYVFSIM 188 (336)
Q Consensus 171 ~ipgiG~ktA~kli~~~~ 188 (336)
++||||+|||--++.-.+
T Consensus 129 ~LpGVG~KTA~~vL~~~g 146 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRNVG 146 (214)
T ss_dssp HSTTCCHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 799999999987766433
Done!