Your job contains 1 sequence.
>psy11827
MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL
RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA
KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA
KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV
PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS
IWSKQYEKPCDRHSSEESVSEPPVFQKLKPVASSPL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11827
(336 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 660 8.5e-65 1
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 625 4.3e-61 1
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 620 1.5e-60 1
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 616 3.9e-60 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 616 3.9e-60 1
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 604 7.3e-59 1
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 602 1.2e-58 1
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 601 1.5e-58 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 596 5.1e-58 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 566 7.8e-55 1
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 437 1.8e-40 1
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 430 1.2e-39 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 402 1.9e-37 1
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 396 2.1e-37 2
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 408 2.3e-37 1
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 395 3.2e-36 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 367 5.8e-33 1
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 342 8.9e-32 2
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 338 4.0e-30 1
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 331 6.2e-30 1
UNIPROTKB|Q5T397 - symbol:EXO1 "Exonuclease 1" species:96... 270 1.8e-23 1
GENEDB_PFALCIPARUM|PF07_0105 - symbol:PF07_0105 "exonucle... 227 6.0e-23 2
UNIPROTKB|Q8IBK1 - symbol:PF07_0105 "Exonuclease I, putat... 227 6.0e-23 2
UNIPROTKB|Q5T398 - symbol:EXO1 "Exonuclease 1" species:96... 249 3.0e-21 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 188 2.4e-12 1
UNIPROTKB|Q5T399 - symbol:EXO1 "Exonuclease 1" species:96... 161 2.0e-11 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 174 1.0e-10 1
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 172 5.2e-10 1
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 172 5.2e-10 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 165 1.2e-09 1
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 166 1.3e-09 1
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 163 4.6e-09 2
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 163 4.6e-09 2
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 152 5.7e-09 2
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 158 7.3e-09 1
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 148 8.1e-09 2
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 148 8.1e-09 2
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 157 9.5e-09 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 156 1.2e-08 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 155 1.6e-08 1
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 154 2.1e-08 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 153 2.7e-08 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 150 6.0e-08 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 149 7.5e-08 1
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 149 7.9e-08 1
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 154 1.3e-07 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 145 2.4e-07 2
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 137 2.9e-07 2
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 144 2.9e-07 1
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 134 3.4e-07 2
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 126 2.1e-06 2
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 132 6.7e-06 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 130 1.2e-05 1
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 121 1.3e-05 1
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 129 1.6e-05 1
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 132 2.4e-05 1
CGD|CAL0001028 - symbol:orf19.652 species:5476 "Candida a... 122 3.0e-05 3
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 128 4.0e-05 2
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 128 4.4e-05 3
GENEDB_PFALCIPARUM|PF10_0080 - symbol:PF10_0080 "endonucl... 124 5.5e-05 1
UNIPROTKB|Q8IJW1 - symbol:PF10_0080 "Endonuclease, putati... 124 5.5e-05 1
SGD|S000000843 - symbol:YEN1 "Holliday junction resolvase... 102 6.9e-05 2
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 120 0.00015 1
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 120 0.00018 2
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 115 0.00019 2
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 118 0.00019 2
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 123 0.00024 1
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 123 0.00025 2
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 118 0.00036 2
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 120 0.00039 1
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 121 0.00040 1
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 121 0.00040 1
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 101 0.00044 2
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 112 0.00049 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 120 0.00051 1
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 117 0.00065 1
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 117 0.00069 1
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 115 0.00078 2
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 118 0.00083 2
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 137/291 (47%), Positives = 191/291 (65%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
+KY++MLL++ IK I+VFDG+HLPAK TE+ RR R K +AAELL L R EA+SH+
Sbjct: 60 LKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGRIEEARSHM 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
R+ VDVTH MAL +I+ CR+R VDCIVAP+EADAQMA+LN A A Y+ITEDSDL +FGA
Sbjct: 120 RRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGA 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
K II+KLDL+G+ ++ EKL A+ K+ KFR MCILSGCDY + G+GL KA
Sbjct: 180 KNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKA 239
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
++ D AL+KI Y + + +++ +++ +F F + +Y+P+ + +
Sbjct: 240 CKFILKTEQEDMRIALKKIPSYLNMRN-LEVDDDYIENFMKAEATFRHMFIYNPLERRMQ 298
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPD 291
L LE DE + + LE +QA LALGNL+PFS++ +D W P+
Sbjct: 299 RLCALEDYETDERYCSNAGTLLE-DSEQALHLALGNLNPFSMKRLDSWTPE 348
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 132/312 (42%), Positives = 201/312 (64%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK+++MLL+H IK I+VFDG LP+K+ E+ RR++R ++ K +LL + SEA+
Sbjct: 60 MKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+S+++TH MA +VI+A RA+GVDC+VAP+EADAQ+AYLN AG +ITEDSDLL FG
Sbjct: 120 TRSINITHAMAHSVIKAARAQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEVDQARLGKCKQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++KI Y K+ + + ++++ F N FLYQ V+DP++++++
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLKMN--ITVPEDYIEGFIRANNTFLYQLVFDPINRKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS 300
PLN E ++ D + LS + A Q+ALGN D +LE++D +NPD+ +P S
Sbjct: 297 PLNAYEDDI-DP--ATLSYAGRYIDDSVALQIALGNKDINTLEQIDDYNPDTV--MPAQS 351
Query: 301 IWSKQYEKPCDR 312
+K C +
Sbjct: 352 RSRSWNDKTCQK 363
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 133/312 (42%), Positives = 198/312 (63%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK ++MLL+H IK I+VFDG LP+K+ E+ RR++R ++ K +LL + SEA+
Sbjct: 60 MKLVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+S+++TH MA NVI+A R++GVDC+VAP+EADAQ+AYLN AG VITEDSDLL FG
Sbjct: 120 IRSINITHTMAHNVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD +RKI Y K+ + + ++++ F N FLYQ V+DP+ ++++
Sbjct: 239 CKLLRLANNPDILKVVRKIGHYLKMN--ITVPEDYIKGFIRANNTFLYQLVFDPIKRKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS 300
PLN E ++ + LS + A Q+ALGN D +LE++D +NPD+ +P S
Sbjct: 297 PLNAYEDDVDPKT---LSYAGQYVDDSIALQIALGNKDINTLEQIDHYNPDTA--MPAQS 351
Query: 301 IWSKQYEKPCDR 312
+K C +
Sbjct: 352 RSHSWTDKACQK 363
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 129/312 (41%), Positives = 196/312 (62%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK+++MLL+H IK +++FDG LP+K+ E+ RR++R ++ K +LL + SEA+
Sbjct: 60 MKFVNMLLSHGIKPVLIFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+S+++TH MA VI+A R++GVDC+VAP+EADAQ+AYLN AG +ITEDSDLL FG
Sbjct: 120 SRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++KI Y K+ + + ++++ F N FLYQ V+DPV ++++
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLKMN--ITVPEDYIKGFIRANNTFLYQLVFDPVRRKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS 300
PLN E ++ E LS A Q+ALGN D + E++D +NPD+ +P S
Sbjct: 297 PLNAYEDDIDPET---LSYAGQYFDDSIALQIALGNKDINTFEQIDDYNPDTA--MPAQS 351
Query: 301 IWSKQYEKPCDR 312
+K C +
Sbjct: 352 RSQSWNDKTCQK 363
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 130/312 (41%), Positives = 196/312 (62%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK+++MLL+H IK I+VFDG LP+K+ E RR++R ++ K +LL + SEA+
Sbjct: 60 MKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+S+++TH MA VI+A R++GVDC+VAP+EADAQ+AYLN AG +ITEDSDLL FG
Sbjct: 120 TRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++KI Y K+ + + ++++ F N FLYQ V+DP+ ++++
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLKMN--ITVPEDYINGFIRANNTFLYQLVFDPIKRKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS 300
PLN E ++ E LS + A Q+ALGN D + E++D +NPD+ +P S
Sbjct: 297 PLNAYEDDVDPET---LSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTA--MPAHS 351
Query: 301 IWSKQYEKPCDR 312
+K C +
Sbjct: 352 RSHSWDDKTCQK 363
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 127/312 (40%), Positives = 194/312 (62%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK++ MLL+ +K I+VFDGR+LP+K+ E+ RR++R ++ K +LL + +EA+
Sbjct: 60 MKFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREGKITEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+SV++T MA +VI+A R RGVDC+VAP+EADAQ+A+LN + A VITEDSDLL FG
Sbjct: 120 TRSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +++ L + FT+ KFRYMCILSGCDY + G+GL KA
Sbjct: 180 KKVILKMDKQGNGLEIEQCHLGRCKSLGNI-FTEEKFRYMCILSGCDYLQSLYGIGLGKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++K+ Y K+ + + +E++ F N FLYQ V+DP+ ++VV
Sbjct: 239 CKLLRMANNPDILKVIKKMGQYLKMD--ISVPEEYIEGFTKANNTFLYQLVFDPLRRKVV 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS 300
PLNP + + LS + ++ Q+ALGNLD +++ +D +NPD+ + P +
Sbjct: 297 PLNPYPDHINP---AALSYAGTNVGDEKGLQMALGNLDINTMQRIDDFNPDAPQTQPPKA 353
Query: 301 IWSKQYEKPCDR 312
S + CD+
Sbjct: 354 PRSSSWNDRCDK 365
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 128/310 (41%), Positives = 194/310 (62%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK+++MLL++ +K I++FDG LP+K+ E RR++R S+ K +LL + SEA+
Sbjct: 60 MKFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+S+++TH MA VI+A RA GVDC+VAP+EADAQ+AYLN AG VITEDSDLL FG
Sbjct: 120 ARSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDYLASLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++KI Y ++ + + ++++T F N FLYQ V+DP+ +++V
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLRMN--ITVPEDYITGFIRANNTFLYQLVFDPIQRKLV 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTS 300
PLN ++ E L+ + A Q+ALGN D + E++D ++PD+ +
Sbjct: 297 PLNAYGDDVNPET---LTYAGQYVGDSVALQIALGNRDVNTFEQIDDYSPDTMPAHSRSH 353
Query: 301 IWS-KQYEKP 309
W+ K +KP
Sbjct: 354 SWNEKAGQKP 363
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 135/323 (41%), Positives = 194/323 (60%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK + MLL+ IK ++VFDG LP+K+ E+ RR+KR ++ K +L + SEA+
Sbjct: 60 MKLVDMLLSFGIKPVLVFDGCTLPSKKEVEKARREKRQANLLKGKQLFREGKLSEARDCF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+SV+VTH MA VI+A RARGVDCIVAP+EADAQ+AYLN G +ITEDSDLL FG
Sbjct: 120 ARSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAIITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+ K+D GN +D+ +L + ++ FT+ KFRYMCILSGCDY + I G+GL KA
Sbjct: 180 KKVFLKIDKFGNGLEIDQARLGNCKQLGNI-FTEEKFRYMCILSGCDYLSSIHGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++K+ Y K+ + +++E++ F N FLYQ V+DP+ +++V
Sbjct: 239 CKLLKLANNPDIIKVIKKMGHYLKMN--ITVSEEYIQGFTRANNTFLYQLVFDPIKRKLV 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLP--- 297
PLN ++ E L FQ+ALGN+D ++E++D +NPD+ + P
Sbjct: 297 PLNDYADDIDPET---LLYAGRHFGDSTGFQIALGNIDIDTMEQIDNYNPDTAQLQPPVQ 353
Query: 298 -------------VTSIWSKQYE 307
V SIWSK Y+
Sbjct: 354 QRSHGWNDKRANHVNSIWSKDYK 376
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 129/313 (41%), Positives = 192/313 (61%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK+++MLL++ +K I+VFDG LP+K+ E RR++R S+ K +LL + SEA+
Sbjct: 60 MKFVNMLLSYGVKPILVFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+SV++TH MA VI+A RA GVDC+VAP+EADAQ+AYLN AG VITEDSDLL FG
Sbjct: 120 TRSVNITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDYLASLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++KI Y K+ + + ++++T F N FLYQ V+DP+ ++++
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLKMN--ITVPEDYITGFIRANNTFLYQLVFDPIQRKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQ-AFQLALGNLDPFSLEEMDQWNPDSEENLPVT 299
PLN ++ E + + D A Q+ALGN D + E++D +PD +
Sbjct: 297 PLNAYGDDVNPETLTYAG----QYVNDSVALQIALGNRDINTFEQIDDVSPDYTPAHSRS 352
Query: 300 SIWSKQYEKPCDR 312
W+ +K C +
Sbjct: 353 HSWN---DKACQK 362
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 121/291 (41%), Positives = 182/291 (62%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK +HMLL+ +K I+VFDG LP+K+ E+ RR+KR ++ K +LL + +EA+
Sbjct: 60 MKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+SV++T MA VI+A R+ GVD IVAP+EAD+Q+AYLN +A+ +ITEDSDLL FG
Sbjct: 120 SRSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KK++ K+D GN +D+ + + FT+ KFRYMCILSGCDY I G+GL KA
Sbjct: 180 KKVLLKMDKFGNGLEIDQARFGMCRSLGDV-FTEEKFRYMCILSGCDYLPSIHGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ +PD ++KI Y K + + + ++ F N FLYQ V+DPV ++++
Sbjct: 239 CKLLKVANNPDITKVIQKIGQYLKTN--ITVPEGYIEGFLRANNTFLYQLVFDPVERKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPD 291
PLNP +++ E +L+ + A Q+ALGN+D + +++D +NPD
Sbjct: 297 PLNPYGNDVNPE---ELNYAGPNMGDSVALQIALGNMDINTRKQIDDYNPD 344
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 437 (158.9 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 108/279 (38%), Positives = 156/279 (55%)
Query: 4 IHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQS 63
+ MLL +K +VFDG +LP+K TE DR+++R K EL R +EA L+++
Sbjct: 63 VRMLLFFGVKPYLVFDGDNLPSKSGTELDRQQRRHESKTLGMELYRKGRTAEAYQELQKA 122
Query: 64 VDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKI 123
VDVT MA +I+ + + +VAP+EADAQ+ YL G+ D +I+EDSDLLVFGAK++
Sbjct: 123 VDVTPLMARQLIEELKKLDIQYVVAPYEADAQLVYLEKHGFIDGIISEDSDLLVFGAKRL 182
Query: 124 IYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDY 183
+ KLD G ++R + ++ +TDA FR MCI+SGCDY I +GLK A
Sbjct: 183 LSKLDQHGELIEINRADFTACREVSFVGWTDADFRRMCIMSGCDYLPNIARVGLKTAYRS 242
Query: 184 VFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPL- 242
+ E ALR + G Y + ++L SF L FLYQ V+ P S ++VPL
Sbjct: 243 IRKYKS--VEKALRMLQFEGP---Y-HVPADYLQSFMQAELTFLYQRVFCPKSGKLVPLT 296
Query: 243 NPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFS 281
+P + DE L ++ + A +A G+LDP S
Sbjct: 297 SPDDGVNLDE----LPFIGADMDPETAVGVANGDLDPTS 331
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 430 (156.4 bits), Expect = 1.2e-39, P = 1.2e-39
Identities = 112/324 (34%), Positives = 175/324 (54%)
Query: 2 KYIHMLLAHKIKVI--------MVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRG 53
KY+ + H+++++ +VFDG LP+K TE R K+R+ K ELL +
Sbjct: 54 KYVDFAM-HRVRMVKYFGATPYIVFDGDFLPSKALTEASRAKRREESKKAGMELLKAGKP 112
Query: 54 SEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDS 113
++A ++++DVT +MA +I+ + V +VAP+EADAQM YL GY +I+EDS
Sbjct: 113 AQAYQEFQKAIDVTPEMARELIEELKKIDVPYVVAPYEADAQMVYLERNGYVSGIISEDS 172
Query: 114 DLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 173
DLLVFGAK+++ KLD G C ++R + + ++ L +TDA+FR M I SGCDY GI
Sbjct: 173 DLLVFGAKRLLTKLDQHGQCIEVNRREFCAVREISLTGWTDAEFRQMAIFSGCDYLDGIN 232
Query: 174 GMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYD 233
MGLK A + P E +R++ GK KI++ +L +F L F++Q V+
Sbjct: 233 KMGLKTAYRMIRKHKTP--EKVIRQLQFEGKH----KISENYLAAFKQAELTFMHQRVFC 286
Query: 234 PVSKEVVPLNPLESEMRDEVFSQLSLK-ELELPKDQAFQLALGNLDPFSLEEMDQWNPDS 292
P +E+V L S + E + K + EL + +A G+++P + E + P S
Sbjct: 287 PEKQELVLLTEPTSGLDVEEMPFIGAKVDPELSR----AIACGDVNPITKERIILPTPPS 342
Query: 293 EE--NLPVTSIW---SKQYEKPCD 311
+ + P S SK KP +
Sbjct: 343 TKWRSFPTKSTVPAPSKPLGKPIE 366
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 101/257 (39%), Positives = 151/257 (58%)
Query: 1 MKY-IH---MLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAEL--LILDRGS 54
+KY IH ML + +K ++VFDG LP K +TE+ R+++R +A EL + D G
Sbjct: 56 LKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQ----EAFELGKKLWDEGK 111
Query: 55 EAQSHLRQS--VDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITED 112
++Q+ ++ S VDVT +MA +I A R G++ IVAP+EADAQ+ YL D +ITED
Sbjct: 112 KSQAIMQFSRCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITED 171
Query: 113 SDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGI 172
SD+LVFGA+ +++K+D GNC + R + +A + L + K R+M I SGCDY G+
Sbjct: 172 SDMLVFGAQTVLFKMDGFGNCITIRRNDIANAQDLNL-RLPIEKLRHMAIFSGCDYTDGV 230
Query: 173 KGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVY 232
GMGLK A Y+ +P A+R + ++ +K+ F F +L F +Q VY
Sbjct: 231 AGMGLKTALRYLQKYPEP--RAAIRAM----RLDKSLKVPVSFEKEFALADLAFRHQRVY 284
Query: 233 DPVSKEVVPLNPLESEM 249
P K +V L+P E E+
Sbjct: 285 CPKDKTLVHLSPPEREL 301
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 396 (144.5 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 92/244 (37%), Positives = 140/244 (57%)
Query: 4 IHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQS 63
I ML+++K+ +++FDG LP K+ E++R + R+ +K KA L+ S+A +++
Sbjct: 63 IKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLLEGNKSQANICFQKA 122
Query: 64 VDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKI 123
VD+T +MA +I+ RA V+ +VAP+EADAQ+ YL+I G D +ITEDSDL+ FGA I
Sbjct: 123 VDITPRMAFLLIKELRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGATHI 182
Query: 124 IYKLDLSGNCCFMDREKLPSALK--MPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAK 181
I+K+D G + E L S K F R MCILSGCDY + GMGLK +
Sbjct: 183 IFKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTS- 241
Query: 182 DYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVP 241
F ++ + + K+ Y K ++E+ F+ + F +Q V+DPVS+ +
Sbjct: 242 ---FKLLKQHRD--IEKVFKYLK-REKSNFSQEYEQQFYKADFTFKHQRVFDPVSRILTT 295
Query: 242 LNPL 245
L PL
Sbjct: 296 LLPL 299
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 269 AFQLALGNLDPFSLEEMDQWNP 290
A ++ALG +DP + E+ D+ P
Sbjct: 348 AEKIALGIIDPETHEQFDKTQP 369
Score = 39 (18.8 bits), Expect = 7.0e-37, Sum P(2) = 7.0e-37
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 237 KEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEM 285
K+ +P P+ S D + S PK + NL+ SL +
Sbjct: 983 KKKLPSTPISSSSNDIISKYFSSPSKVGPKSEGAPPTPVNLEGMSLRSV 1031
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 408 (148.7 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 100/281 (35%), Positives = 148/281 (52%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
M +++L H +K IMVFDG LP K E R + R + A+A E S A
Sbjct: 60 MHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECY 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
++VD++ +A +IQ R VD +VAP+EADAQMA+L I D +ITEDSDL+ FG
Sbjct: 120 SKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
+II+K+D G+ KLP + L+ F+ MCILSGCDY + GMGLK+A
Sbjct: 180 LRIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRA 239
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
+ ++ ++ + Y S V + + SF L F +Q VYDP +++++
Sbjct: 240 HALITKFKS--YDRVIKHLK-Y----STVSVPPLYEESFKRALLTFKHQRVYDPNAEDII 292
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFS 281
L ++ D + +P+D A +ALG LDPF+
Sbjct: 293 HL----CDISDNLGEDSDFVGPSMPQDIAKGIALGQLDPFT 329
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 395 (144.1 bits), Expect = 3.2e-36, P = 3.2e-36
Identities = 105/276 (38%), Positives = 144/276 (52%)
Query: 2 KYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLR 61
KY+ LL V+MVFDGR LPAK+ T E+RR+ R+ K A LL EA+ R
Sbjct: 61 KYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDTYR 120
Query: 62 QSVDVTHKMALNVIQACRAR-GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+ ++ + N IQ R+ VD +VAP+EADAQ+AYL D VITEDSDL+VFG
Sbjct: 121 LATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVFGC 180
Query: 121 KKIIYKLD-LSGNCCFMDREKLPSALKMPLA--KFTDAKFRYMCILSGCDYW-TGIKGMG 176
+ I +K +G C ++ L + L KF KFR +CILSGCDY G+ G+G
Sbjct: 181 EMIYFKWQSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRRICILSGCDYLQAGLPGVG 240
Query: 177 LKKAKDYVFSIMD-PDFENALRKINVYGKIGSYVK-ITKEFLTSFHNTNLMFLYQPVYDP 234
L A + FS+ D LRK+ Y K + + EF+ +F F +Q V+DP
Sbjct: 241 LSTAAKF-FSMTSIKDLRTLLRKVPSYLKNPKLKEHVNDEFIRNFEKAENTFKHQIVFDP 299
Query: 235 VSKEVVPLNPLESEMRDEVFSQLS-LKELELPKDQA 269
+ PL P E+ L + +L+ PK A
Sbjct: 300 RERCQKPLTPYPKEVLMTGVDDLEEVIDLDSPKKTA 335
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 367 (134.2 bits), Expect = 5.8e-33, P = 5.8e-33
Identities = 91/254 (35%), Positives = 133/254 (52%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
+K +L K++ +VFDG +P K++TE RR KR +KA A L A +
Sbjct: 60 IKRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
++ VD+T +MA +I C+ G+ IVAPFEAD+QM YL +I+EDSDLLVFG
Sbjct: 120 QKCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGC 179
Query: 121 KKIIYKLDLSGNCCFMDRE---KLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGL 177
+++I KL+ G C + R+ KLP K PL T+ + M LSGCDY GI +GL
Sbjct: 180 RRLITKLNDYGECLEICRDNFIKLPK--KFPLGSLTNEEIITMVCLSGCDYTNGIPKVGL 237
Query: 178 KKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSK 237
A V E + I GK+ I ++ + L F +Q V+ P+ K
Sbjct: 238 ITAMKLVRRFNT--IERIILSIQREGKL----MIPDTYINEYEAAVLAFQFQRVFCPIRK 291
Query: 238 EVVPLNPLESEMRD 251
++V LN + ++D
Sbjct: 292 KIVSLNEIPLYLKD 305
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 342 (125.4 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 95/281 (33%), Positives = 138/281 (49%)
Query: 4 IHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQS 63
I ML I VFDG LP K+ T +R+ KR K A + + + A ++
Sbjct: 63 IQMLNHFGITPYFVFDGASLPTKQETNRERQLKRQEAKELAEKYIAANNRKLAYKQFMKA 122
Query: 64 VDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKI 123
VT +MA +V+ + IVAP+EAD QM YL G D +++EDSDLL+FG KK+
Sbjct: 123 AYVTSQMAKSVMCELDNLSIKYIVAPYEADPQMVYLEKMGIVDGILSEDSDLLIFGCKKL 182
Query: 124 IYKLDLSGNCCFMDREKLPSALKMP-LAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKD 182
I KL G C ++R+K ++P L ++ + R + +LSGCDY G+ G+GLK A
Sbjct: 183 ITKLKDDGTCVEINRDKFDKVKEIPYLNQYNMEQLRLVAMLSGCDYTKGVPGIGLKTAFQ 242
Query: 183 YVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPL 242
V + F + + GK KI F NL F +Q V+DP S+++ L
Sbjct: 243 LVRKYNN--FTKIMIALRSMGK-----KIPDTFSDEVKLANLAFQFQKVFDPTSQKLTTL 295
Query: 243 NPLESEMRDEVFSQLSLKELELPK---DQAFQ-LALGNLDP 279
N + EV + L E K D+ +Q L G + P
Sbjct: 296 NEYPQD-GTEVEADQGLLESCCGKTLTDEIYQQLCNGKIHP 335
Score = 38 (18.4 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 282 LEEMDQWNPDSEENL 296
+E++ NP +EENL
Sbjct: 480 IEKIQPENPTTEENL 494
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 338 (124.0 bits), Expect = 4.0e-30, P = 4.0e-30
Identities = 95/316 (30%), Positives = 163/316 (51%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
M +++L ++I ++V DG ++P K AT ++R +KR ++ AA + + + A + L
Sbjct: 63 MHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKAN-FDAAMVKLKEGNVAAATEL 121
Query: 61 RQ-SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIA----GYADYVITEDSDL 115
Q +V VT MA +IQ ++ V+ IVAP+EADAQ+AYL+ G VITEDSDL
Sbjct: 122 FQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSDL 181
Query: 116 LVFGAKKIIYKLDLSGNCCFMDREKLPSAL--KMPLAKFTDAKFRYMCILSGCDYWTGIK 173
L +G K +I+K+D G + + + A+ K F F MC+L+GCD+ +
Sbjct: 182 LAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVP 241
Query: 174 GMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYD 233
G+G+ +A ++ + + K GK+ + ++ +SF +F + VYD
Sbjct: 242 GVGISRAHAFISKYQSVELVLSFLKTKK-GKL-----VPDDYSSSFTEAVSVFQHARVYD 295
Query: 234 PVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSE 293
+K++ L PL + + QL +L A +A GN+DP +++ + ++ +
Sbjct: 296 FDAKKLKHLKPLSHNLLNLPVEQLEFLGPDLSPSVAVAIAEGNVDPITMKAFNHFSVSRK 355
Query: 294 E-NLPVTSIWSKQYEK 308
PV S K+ EK
Sbjct: 356 PLKTPVRSF--KEQEK 369
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 88/245 (35%), Positives = 129/245 (52%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
+K + +L KIK +VFDG L K TE RRKKR ++ A +L A +
Sbjct: 60 IKRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGNRYNAMEYF 119
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
++SVD+T +MA +I C+ + IVAPFEAD QM YL G +I+EDSDLLVFG
Sbjct: 120 QKSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSAL--KMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLK 178
K +I KL+ G + ++ SAL PL + ++ +FR + L+GCDY +GI +G+
Sbjct: 180 KTLITKLNDQGKALEISKDDF-SALPENFPLGELSEQQFRNLVCLAGCDYTSGIWKVGVV 238
Query: 179 KAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKE 238
A V + ++ L +I K+ +K F N F YQ V+ P+S +
Sbjct: 239 TAMKIVKRYSE--MKDILIQIERTEKLC----FSKAFKQQVEFANYAFQYQRVFCPLSNQ 292
Query: 239 VVPLN 243
+ LN
Sbjct: 293 ITTLN 297
>UNIPROTKB|Q5T397 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR019974 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00484 SMART:SM00485
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511 IPI:IPI00844071
SMR:Q5T397 STRING:Q5T397 Ensembl:ENST00000423131
HOGENOM:HOG000264445 Uniprot:Q5T397
Length = 169
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 56/116 (48%), Positives = 79/116 (68%)
Query: 26 KEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDC 85
K A E ++R ++ K +LL + SEA+ +S+++TH MA VI+A R++GVDC
Sbjct: 45 KLAKGEPTDRRRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDC 104
Query: 86 IVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKL 141
+VAP+EADAQ+AYLN AG +ITEDSDLL FG KK+I K+D GN +D+ +L
Sbjct: 105 LVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARL 160
>GENEDB_PFALCIPARUM|PF07_0105 [details] [associations]
symbol:PF07_0105 "exonuclease i, putative"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0006298 "mismatch repair" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 EMBL:AL844506 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 227 (85.0 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 10 HKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLR----QSVD 65
H IKV+ VFDG LP K+ R+ +R+ K + E++ + + Q++
Sbjct: 69 HNIKVVFVFDGEELPEKKKENMIRKNRREKAKMELQEIISKVKNPRTNEMVLKKCIQAIS 128
Query: 66 VTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIY 125
V+ ++ +V + CR + +D I++P+EADAQ++YL G+ I+EDSDLLV+G +++Y
Sbjct: 129 VSKEIIDSVKEFCRKKNIDYIISPYEADAQLSYLCRMGFISCAISEDSDLLVYGCPRVLY 188
Query: 126 KLDLSGNC 133
KL +G C
Sbjct: 189 KLKNTGEC 196
Score = 104 (41.7 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 29/99 (29%), Positives = 45/99 (45%)
Query: 149 LAKFTDAKFRYMCILSGCDYWTG--IKGMGLKKAKDYVFSIMDPD--FENALRKINVYGK 204
L F F MC+LSGCDY I GMG+K A + +F + + F + K
Sbjct: 330 LQYFNIDMFLTMCVLSGCDYSNDFHITGMGIKTAYNLIFQHKNIENIFHFLISNDRWRNK 389
Query: 205 IGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLN 243
I + + + +F FL VYD + ++ +P+N
Sbjct: 390 IPENLNTFDKLMNTFQKIKNAFLNHQVYDFILRKNIPIN 428
Score = 51 (23.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 193 ENALRKINVYGKI-GSYVKITKEFLTSFHNTNLMFLYQPV------YDPVSK-----EVV 240
+NA VY I + I + F +SF N N F+ Q + YDP+ K +
Sbjct: 408 KNAFLNHQVYDFILRKNIPINESFKSSFVNKNSHFIIQQITEASLLYDPLLKIDNCLNIY 467
Query: 241 P-LN--PLES-EMRDEVFSQ 256
P LN PL S +++D+ +++
Sbjct: 468 PQLNDIPLSSPQIQDDDYNK 487
Score = 43 (20.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 179 KAKDYVFSIMDPDFENALRKINVYGKI 205
K ++F ++ D ++ +NV GK+
Sbjct: 833 KKNFFLFKTLNEDMNTPIKSLNVKGKM 859
Score = 38 (18.4 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 218 SFHNTNLMFLYQPVY 232
SFH+ N+M Y Y
Sbjct: 766 SFHSNNIMETYNDHY 780
>UNIPROTKB|Q8IBK1 [details] [associations]
symbol:PF07_0105 "Exonuclease I, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 EMBL:AL844506
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 227 (85.0 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 10 HKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLR----QSVD 65
H IKV+ VFDG LP K+ R+ +R+ K + E++ + + Q++
Sbjct: 69 HNIKVVFVFDGEELPEKKKENMIRKNRREKAKMELQEIISKVKNPRTNEMVLKKCIQAIS 128
Query: 66 VTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIY 125
V+ ++ +V + CR + +D I++P+EADAQ++YL G+ I+EDSDLLV+G +++Y
Sbjct: 129 VSKEIIDSVKEFCRKKNIDYIISPYEADAQLSYLCRMGFISCAISEDSDLLVYGCPRVLY 188
Query: 126 KLDLSGNC 133
KL +G C
Sbjct: 189 KLKNTGEC 196
Score = 104 (41.7 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 29/99 (29%), Positives = 45/99 (45%)
Query: 149 LAKFTDAKFRYMCILSGCDYWTG--IKGMGLKKAKDYVFSIMDPD--FENALRKINVYGK 204
L F F MC+LSGCDY I GMG+K A + +F + + F + K
Sbjct: 330 LQYFNIDMFLTMCVLSGCDYSNDFHITGMGIKTAYNLIFQHKNIENIFHFLISNDRWRNK 389
Query: 205 IGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLN 243
I + + + +F FL VYD + ++ +P+N
Sbjct: 390 IPENLNTFDKLMNTFQKIKNAFLNHQVYDFILRKNIPIN 428
Score = 51 (23.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 193 ENALRKINVYGKI-GSYVKITKEFLTSFHNTNLMFLYQPV------YDPVSK-----EVV 240
+NA VY I + I + F +SF N N F+ Q + YDP+ K +
Sbjct: 408 KNAFLNHQVYDFILRKNIPINESFKSSFVNKNSHFIIQQITEASLLYDPLLKIDNCLNIY 467
Query: 241 P-LN--PLES-EMRDEVFSQ 256
P LN PL S +++D+ +++
Sbjct: 468 PQLNDIPLSSPQIQDDDYNK 487
Score = 43 (20.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 179 KAKDYVFSIMDPDFENALRKINVYGKI 205
K ++F ++ D ++ +NV GK+
Sbjct: 833 KKNFFLFKTLNEDMNTPIKSLNVKGKM 859
Score = 38 (18.4 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 218 SFHNTNLMFLYQPVY 232
SFH+ N+M Y Y
Sbjct: 766 SFHSNNIMETYNDHY 780
>UNIPROTKB|Q5T398 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR019974 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00484 SMART:SM00485
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511 HOGENOM:HOG000264445
IPI:IPI00644243 SMR:Q5T398 STRING:Q5T398 Ensembl:ENST00000437497
Uniprot:Q5T398
Length = 166
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 54/116 (46%), Positives = 77/116 (66%)
Query: 26 KEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDC 85
K A E ++R ++ K +LL + SEA+ +S+++TH MA +A R++GVDC
Sbjct: 45 KLAKGEPTDRRRQANLLKGKQLLREGKVSEARECFTRSINITHAMAH---KAARSQGVDC 101
Query: 86 IVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKL 141
+VAP+EADAQ+AYLN AG +ITEDSDLL FG KK+I K+D GN +D+ +L
Sbjct: 102 LVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARL 157
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 188 (71.2 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 63/185 (34%), Positives = 90/185 (48%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEA--QSHLRQSV 64
LL + IK + VFDG+ P ++ E +R +R KA + D G +A + R+ V
Sbjct: 74 LLDNGIKPVYVFDGKP-PDLKSGELAKRAERREEAEKALKAAT-DAGDDAGIEKFNRRLV 131
Query: 65 DVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKII 124
VT + A + GV + AP EA+AQ A L AG TED D L FG+ K++
Sbjct: 132 RVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLL 191
Query: 125 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 184
L S +E L LA + +F +CIL GCDY IKG+G K+A + +
Sbjct: 192 RYLTYSEARKMPVKEFSYDKLLEGLA-INNREFIDLCILLGCDYCESIKGIGPKRAIELI 250
Query: 185 FSIMD 189
+ D
Sbjct: 251 NTYRD 255
>UNIPROTKB|Q5T399 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0002455 "humoral immune response mediated
by circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0002455 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0045190 PANTHER:PTHR11081 GO:GO:0016446
HOGENOM:HOG000112413 EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511
GO:GO:0043566 IPI:IPI01012173 SMR:Q5T399 STRING:Q5T399
Ensembl:ENST00000450748 Uniprot:Q5T399
Length = 135
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
MK+++MLL+H IK I+VFDG LP+K+ E RR++R ++ K +LL + SEA+
Sbjct: 60 MKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 61 RQSVDVTHKMALNVIQ 76
+S+++TH MA VI+
Sbjct: 120 TRSINITHAMAHKVIK 135
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 174 (66.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 53/175 (30%), Positives = 89/175 (50%)
Query: 12 IKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGS--EAQSHLRQSVDVTHK 69
+K + VFDG+ P + E ++R +R + KA ++G EA+ R+ V VT +
Sbjct: 79 VKPVYVFDGKP-PDMKGGELEKRSERRAEAEKALTEA-KEKGDVKEAEKFERRLVKVTKQ 136
Query: 70 MALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDL 129
+ G+ + AP EA+AQ A+L AG +TED D L FG+ ++ + L
Sbjct: 137 QNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGST-VLLRHFL 195
Query: 130 SGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 184
+ + ++ +L + K + +F +CIL GCDY I+G+G KKA + +
Sbjct: 196 APVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELI 250
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 172 (65.6 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 73/236 (30%), Positives = 110/236 (46%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELL--ILDRGS--EAQSHLRQ 62
L+ + +K I VFDG K + E R +KR KA ELL + G+ E + +
Sbjct: 76 LMENGLKPIYVFDGAPPELKGSELEKRGEKRQ----KAEELLKKAKEEGNLEEIKKQSGR 131
Query: 63 SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKK 122
+V VT K + G+ I AP EA++Q A+L A TED+D LVFG K
Sbjct: 132 TVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKI 191
Query: 123 IIYKLDLSGNCCFMDREKLPSA---------LKMPLA--KFTDAKFRYMCILSGCDYWTG 171
+I L+ + ++ K S L+ L T +F CIL GCDY
Sbjct: 192 LIRNLNANATSN-QNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDT 250
Query: 172 IKGMGLKKAKDYV--FSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLM 225
IKG+G K A + + ++ ++ EN + N Y ++ S + +E SF N N++
Sbjct: 251 IKGIGSKTAYNLIKEYNCIEKIIENIDQ--NKY-QVPSNFRF-QEARKSFINPNVL 302
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 172 (65.6 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 73/236 (30%), Positives = 110/236 (46%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELL--ILDRGS--EAQSHLRQ 62
L+ + +K I VFDG K + E R +KR KA ELL + G+ E + +
Sbjct: 76 LMENGLKPIYVFDGAPPELKGSELEKRGEKRQ----KAEELLKKAKEEGNLEEIKKQSGR 131
Query: 63 SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKK 122
+V VT K + G+ I AP EA++Q A+L A TED+D LVFG K
Sbjct: 132 TVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKI 191
Query: 123 IIYKLDLSGNCCFMDREKLPSA---------LKMPLA--KFTDAKFRYMCILSGCDYWTG 171
+I L+ + ++ K S L+ L T +F CIL GCDY
Sbjct: 192 LIRNLNANATSN-QNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDT 250
Query: 172 IKGMGLKKAKDYV--FSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLM 225
IKG+G K A + + ++ ++ EN + N Y ++ S + +E SF N N++
Sbjct: 251 IKGIGSKTAYNLIKEYNCIEKIIENIDQ--NKY-QVPSNFRF-QEARKSFINPNVL 302
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 55/184 (29%), Positives = 83/184 (45%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
L++ IK I VFDG K R+ +R K E + E Q ++ + V
Sbjct: 75 LISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNEEVQKFAKRVITV 134
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYK 126
T K + I+ GV + AP EA+AQ A + G A +ED D L G+ ++ +
Sbjct: 135 TRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMDSLTLGSTVLLRR 194
Query: 127 LDLSGNCCFMDREKLPSALKMPLAK------FTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
L F + +K+P L+ L T +F + IL GCDY IKG+G K+A
Sbjct: 195 L------FFSEAKKMP-ILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIKGIGPKRA 247
Query: 181 KDYV 184
+ +
Sbjct: 248 IELI 251
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 55/174 (31%), Positives = 83/174 (47%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
LL IK + VFDG+ K R KR A + + + + +++V V
Sbjct: 75 LLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKV 134
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKII-Y 125
T + + + R GV + A EA+AQ A L +G V +ED D L FGA K + +
Sbjct: 135 TKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRH 194
Query: 126 KLDLSGNCC-FMDRE--KLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 176
+D S M+ E K+ L++ + +F D +CILSGCDY I+G+G
Sbjct: 195 LMDPSSRKIPVMEFEVAKILEELQLTMDQFID-----LCILSGCDYCDSIRGIG 243
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 163 (62.4 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 47/174 (27%), Positives = 89/174 (51%)
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+ ++++ +M ++ G+ I +P EA+AQ +YLN Y D +I++DSD+LVF
Sbjct: 1202 KNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSG 1261
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
K +I + +K A++ L + + + +L GCDY G+ G+G+ A
Sbjct: 1262 KTVIKNFFNKKKTVEVYEKK---AIEEKLGLYQEELIN-ISLLCGCDYTIGVHGIGIVNA 1317
Query: 181 KDYVFSIMDPDFENA--LRKI--NVYGKIGS--YVKITKEFLTSFHNTNLMFLY 228
+ + + P+FE+ L+ I N + KI Y + ++FL + N L +++
Sbjct: 1318 LEIIKAF--PNFEDLKILKDIVSNPFRKIDKNMYNEEIQQFLNTHKNYKLNWIF 1369
Score = 51 (23.0 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRR-KKRDSHKA--KAAELLI 49
LL + I+ I +FDG K T R KKR+ + K AE L+
Sbjct: 93 LLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAEKLV 138
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 163 (62.4 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 47/174 (27%), Positives = 89/174 (51%)
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+ ++++ +M ++ G+ I +P EA+AQ +YLN Y D +I++DSD+LVF
Sbjct: 1202 KNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSG 1261
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
K +I + +K A++ L + + + +L GCDY G+ G+G+ A
Sbjct: 1262 KTVIKNFFNKKKTVEVYEKK---AIEEKLGLYQEELIN-ISLLCGCDYTIGVHGIGIVNA 1317
Query: 181 KDYVFSIMDPDFENA--LRKI--NVYGKIGS--YVKITKEFLTSFHNTNLMFLY 228
+ + + P+FE+ L+ I N + KI Y + ++FL + N L +++
Sbjct: 1318 LEIIKAF--PNFEDLKILKDIVSNPFRKIDKNMYNEEIQQFLNTHKNYKLNWIF 1369
Score = 51 (23.0 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRR-KKRDSHKA--KAAELLI 49
LL + I+ I +FDG K T R KKR+ + K AE L+
Sbjct: 93 LLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAEKLV 138
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 152 (58.6 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 46 ELLILDR-----GSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLN 100
E+ +LD+ G E + R + V+ +M + + G+ I+AP EA+AQ A++
Sbjct: 896 EIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFME 955
Query: 101 IAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAK---FTDAKF 157
+ D ++T+DSD+ +FGA+ + YK N F DR+ + + + K + K
Sbjct: 956 QSNLVDGIVTDDSDVFLFGARSV-YK-----NI-FDDRKYVETYFMKDIEKELGLSRDKI 1008
Query: 158 RYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPD 191
M +L G DY GI G+G+ A + V + + D
Sbjct: 1009 IRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEED 1042
Score = 62 (26.9 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAK---AAELLILDR 52
LL + K I VFDG K T RR++R++ + K AE L+L+R
Sbjct: 65 LLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNR 113
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 158 (60.7 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 58/182 (31%), Positives = 89/182 (48%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL----RQ 62
+L IK + VFDG+ P ++ E ++R +R +A+A +LL + + Q ++ ++
Sbjct: 74 MLESGIKPVYVFDGKP-PQLKSGELEKRVER---RAEAEKLLAQAQEAGEQENIDKFSKR 129
Query: 63 SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKK 122
V VT + + GV I AP EA+A A L AG TED D L FG
Sbjct: 130 LVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTV 189
Query: 123 IIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKD 182
++ L S +E S + + + T +F +CIL GCDY IKG+G K+A D
Sbjct: 190 LLRHLTASEAKKLPIQEFHFSRILQDM-ELTHQQFIDLCILLGCDYCGTIKGIGPKRAID 248
Query: 183 YV 184
+
Sbjct: 249 LI 250
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 148 (57.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 47/128 (36%), Positives = 65/128 (50%)
Query: 57 QSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116
Q R S +VT M +V + + G+ I AP EA+AQ A L G D ++T+DSD
Sbjct: 716 QKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCF 775
Query: 117 VFGAKKIIYK--LDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKG 174
+FG KI YK D F ++ L + KM L T K + +L G DY GIKG
Sbjct: 776 LFGGDKI-YKNMFDQKQYVEFYLQDDLFN--KMAL---TQHKLIELALLLGSDYTEGIKG 829
Query: 175 MGLKKAKD 182
+G +A +
Sbjct: 830 IGPVQAME 837
Score = 61 (26.5 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 7 LLAHKIKVIMVFDGRHLPA-KEATEEDRRKKRD----SHKAKAAELLILDRGSEAQSHLR 61
LL I I VFDG +PA K+ T +R+++R+ S + A +LL + EA++ L
Sbjct: 65 LLYFGILPIFVFDGG-VPALKKQTINNRKQRREKNSESRQETAQKLLAIQLQREAENALN 123
Query: 62 QS 63
+S
Sbjct: 124 RS 125
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 148 (57.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 47/128 (36%), Positives = 65/128 (50%)
Query: 57 QSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116
Q R S +VT M +V + + G+ I AP EA+AQ A L G D ++T+DSD
Sbjct: 716 QKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCF 775
Query: 117 VFGAKKIIYK--LDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKG 174
+FG KI YK D F ++ L + KM L T K + +L G DY GIKG
Sbjct: 776 LFGGDKI-YKNMFDQKQYVEFYLQDDLFN--KMAL---TQHKLIELALLLGSDYTEGIKG 829
Query: 175 MGLKKAKD 182
+G +A +
Sbjct: 830 IGPVQAME 837
Score = 61 (26.5 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 7 LLAHKIKVIMVFDGRHLPA-KEATEEDRRKKRD----SHKAKAAELLILDRGSEAQSHLR 61
LL I I VFDG +PA K+ T +R+++R+ S + A +LL + EA++ L
Sbjct: 65 LLYFGILPIFVFDGG-VPALKKQTINNRKQRREKNSESRQETAQKLLAIQLQREAENALN 123
Query: 62 QS 63
+S
Sbjct: 124 RS 125
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 157 (60.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 63/243 (25%), Positives = 101/243 (41%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
++ + IK + VFDG+ K R ++R + + + G E + ++ V V
Sbjct: 74 MMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAGEEVEKFTKRLVKV 133
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYK 126
T + GV + AP EA+A A L AG TED D L FG+ ++
Sbjct: 134 TKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRH 193
Query: 127 LDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFS 186
L S +E S + L +F +CIL G DY I+G+G K+A D +
Sbjct: 194 LTASEAKKLPIQEFHLSRVLQELG-LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK 252
Query: 187 IMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLE 246
E +R+++ Y + + +L +FL V DP + E+ P E
Sbjct: 253 --HKSIEEIVRRLDP----NKY-PVPENWLHK--EAQQLFLEPEVLDPEAVELKWSEPNE 303
Query: 247 SEM 249
E+
Sbjct: 304 EEL 306
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 156 (60.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 63/243 (25%), Positives = 101/243 (41%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
++ + IK + VFDG+ K R ++R + + E +E + ++ V V
Sbjct: 74 MMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKV 133
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYK 126
T + G+ + AP EA+A A L AG TED D L FG+ ++
Sbjct: 134 TKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRH 193
Query: 127 LDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFS 186
L S +E S + L +F +CIL G DY I+G+G K+A D +
Sbjct: 194 LTASEAKKLPIQEFHLSRILQELG-LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK 252
Query: 187 IMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLE 246
E +R+++ Y + + +L +FL V DP S E+ P E
Sbjct: 253 --HKSIEEIVRRLDP----NKY-PVPENWLHK--EAQQLFLEPEVLDPESVELKWSEPNE 303
Query: 247 SEM 249
E+
Sbjct: 304 EEL 306
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 155 (59.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 68/252 (26%), Positives = 108/252 (42%)
Query: 1 MKYIHMLLAHKIKVIMVFDGR--HLPAKE-ATEEDRRKKRDSHKAKAAELLILDRGSEAQ 57
M Y + + + IK + VFDG+ L + E A +RR + + +A E + + E +
Sbjct: 66 MFYRTIRMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEE---EVE 122
Query: 58 SHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLV 117
++ V VT + G+ + AP EA+A A L AG TED D L
Sbjct: 123 KFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLT 182
Query: 118 FGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGL 177
FG+ ++ L S +E S + L +F +CIL G DY I+G+G
Sbjct: 183 FGSPVLMRHLTASEAKKLPIQEFHLSRVLQELG-LNQEQFVDLCILLGSDYCESIRGIGA 241
Query: 178 KKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSK 237
K+A D + E +R+++ S + + +L +FL V DP S
Sbjct: 242 KRAVDLIQK--HKSIEEIVRRLDP-----SKYPVPENWLHK--EAQQLFLEPEVVDPESV 292
Query: 238 EVVPLNPLESEM 249
E+ P E E+
Sbjct: 293 ELKWSEPNEEEL 304
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 154 (59.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 55/183 (30%), Positives = 86/183 (46%)
Query: 7 LLAHKIKVIMVFDGR--HLPAKE-ATEEDRRKKRDSHKAKAAELLILDRGSEA--QSHLR 61
++ + IK + VFDG+ L + E A +RR + + H +A E G EA + +
Sbjct: 74 MVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEA-----GEEANIEKFSK 128
Query: 62 QSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAK 121
+ V VT + + G+ + AP EA+A A L AG TED D L FG+
Sbjct: 129 RLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSP 188
Query: 122 KIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAK 181
++ L S +E + + L T +F +CIL GCDY I+G+G K+A
Sbjct: 189 VLMRHLTASEAKKLPIQEFHLNRVLQDLG-LTWEQFVDLCILLGCDYCESIRGIGPKRAV 247
Query: 182 DYV 184
+ +
Sbjct: 248 ELI 250
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 153 (58.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 62/243 (25%), Positives = 101/243 (41%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
++ + IK + VFDG+ K R ++R + + + E + ++ V V
Sbjct: 74 MMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKV 133
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYK 126
T + G+ + AP EA+A A L AG TED D L FG+ ++
Sbjct: 134 TKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRH 193
Query: 127 LDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFS 186
L S +E S + L +F +CIL G DY I+G+G K+A D +
Sbjct: 194 LTASEAKKLPIQEFHLSRILQELG-LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK 252
Query: 187 IMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLE 246
E +R+++ Y + + +L + +FL V DP S E+ P E
Sbjct: 253 --HKSIEEIVRRLDP----NKY-PVPENWLHK--EAHQLFLEPEVLDPESVELKWSEPNE 303
Query: 247 SEM 249
E+
Sbjct: 304 EEL 306
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 150 (57.9 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 63/245 (25%), Positives = 106/245 (43%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSE--AQSHLRQSV 64
++ + IK + +FDG+ P ++ E +R +R + K + + G+E + ++ V
Sbjct: 74 MMENGIKPVYIFDGKP-PQLKSGELAKRSERRAEAEKQLQQA-QEAGAEEEVEKFTKRLV 131
Query: 65 DVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKII 124
VT + G+ + AP EA+A A L AG TED D L FG+ ++
Sbjct: 132 KVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLM 191
Query: 125 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 184
L S +E S + L +F +CIL G DY ++G+G K+A D +
Sbjct: 192 RHLTASEAKKLPIQEFHLSRVLQELG-LNQEQFVDLCILLGSDYCESVRGIGPKRAVDLI 250
Query: 185 FSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNP 244
E +R+++ S + + +L +FL V DP S E+ P
Sbjct: 251 QK--HKSIEEIVRRLDP-----SKYPVPENWLHK--EARQLFLEPEVLDPESVELKWSEP 301
Query: 245 LESEM 249
E E+
Sbjct: 302 NEEEL 306
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 149 (57.5 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 49/174 (28%), Positives = 82/174 (47%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRR--KKRDSHKAKAAELLILDRGS--EAQSHLRQ 62
++ + IK + VFDG+ P + E ++R ++ ++ K K A + D G+ E ++
Sbjct: 75 MVENNIKPVYVFDGKP-PVLKGGELEKRLLRREEAQKQKTA---LGDEGTVEEVLKFEKR 130
Query: 63 SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKK 122
V VT + + + G+ C+ AP EA+AQ A L G +ED D L +
Sbjct: 131 LVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPF 190
Query: 123 IIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 176
++ L S M +++ + T +F +CIL GCDY IKG+G
Sbjct: 191 LLRHLTFS-EARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIG 243
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 149 (57.5 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 61/243 (25%), Positives = 100/243 (41%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
++ + IK + VFDG+ K R ++R + + + E + ++ V V
Sbjct: 74 MMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKV 133
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYK 126
T + G+ + AP EA+A A L AG TED D L FG+ ++
Sbjct: 134 TKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRH 193
Query: 127 LDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFS 186
L S +E + + L +F +CIL G DY I+G+G K+A D +
Sbjct: 194 LTASEAKKLPIQEFHLNRILQELG-LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK 252
Query: 187 IMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLE 246
E +R+++ Y + + +L +FL V DP S E+ P E
Sbjct: 253 --HKSIEEIVRRLDP----NKY-PVPENWLHK--EAQQLFLEPEVLDPESVELKWSEPNE 303
Query: 247 SEM 249
E+
Sbjct: 304 EEL 306
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 154 (59.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 48/171 (28%), Positives = 79/171 (46%)
Query: 26 KEATEEDRRKKRDSHKAKAAELLILDRGS---EAQSHLRQSVDVTHKMALNVIQACRARG 82
K+A E + +K + A L +R E R + ++ +M+++ + R G
Sbjct: 833 KDAAEALKSQKTSEELQELATNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFG 892
Query: 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMD--REK 140
+ IVAP EA+AQ A+LN IT+DSD+ +FG + + YK + N M+ E+
Sbjct: 893 IPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTV-YKNFFAQNKHVMEFRAEQ 951
Query: 141 LPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPD 191
+ K + C++ G DY TGI G+G A + + S D
Sbjct: 952 IEQTFNCNRGKL----IQLACLV-GSDYTTGIHGIGAVTALEILASFSGQD 997
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 145 (56.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 56/187 (29%), Positives = 88/187 (47%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELL-ILDRGSEAQS---HLRQ 62
++ H IK + VFDG+ P ++ E +R +R +A+A +LL + E ++ ++
Sbjct: 74 MVEHGIKPVYVFDGKP-PQMKSGELAKRSER---RAEAEKLLEAAEEAGEVENIEKFTKR 129
Query: 63 SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKK 122
V VT + + G+ + AP EA+A A L AG TED D L FG
Sbjct: 130 LVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPV 189
Query: 123 IIYKLDLSGNCCFMDREKLPSA---LKMPLAKF--TDAKFRYMCILSGCDYWTGIKGMGL 177
++ L S + +KLP L + T +F +CIL G DY I+G+G
Sbjct: 190 LLRHLTAS------EAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGP 243
Query: 178 KKAKDYV 184
K+A D +
Sbjct: 244 KRAIDLI 250
Score = 38 (18.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 251 DEVFSQLSLKELELPKDQAFQLALGN-LDPFSLEEMD----QWNPDSEENLPVTSIWSKQ 305
DE+ + LK+ +P++ + A L+P + + D +W EE L KQ
Sbjct: 257 DEIIDNIDLKKYPVPENWLHKEAKHLFLEP-EVVDTDITELKWIEPDEEGLVAFMCGEKQ 315
Query: 306 YEK 308
+ +
Sbjct: 316 FSE 318
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 137 (53.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDRE-- 139
GV CI AP EA+A A+L G + V +ED D L FG ++ +L+ + +
Sbjct: 121 GVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSEITEYSLP 180
Query: 140 KLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
KL AL++ +F D +CIL GCDY I G+G +A
Sbjct: 181 KLLEALQLKYEEFVD-----LCILLGCDYCDKIGGLGPSRA 216
Score = 45 (20.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 8 LAHKIKVIMVFDGRHLPAKEATEEDR 33
L H IK + V DG+ K A E R
Sbjct: 66 LEHDIKPVFVLDGKPPHQKRAVLEKR 91
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 58/188 (30%), Positives = 90/188 (47%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELL-ILDRGSEAQS---HLRQ 62
+L H IK + VFDG+ P ++ E +R +R +A+A +LL + E ++ ++
Sbjct: 74 MLEHGIKPVYVFDGKP-PQMKSGELAKRSER---RAEAEKLLEAAEEAGEVENIEKFNKR 129
Query: 63 SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKK 122
V VT + + G+ + AP EA+A A L AG TED D L FG
Sbjct: 130 LVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPV 189
Query: 123 IIYKLDLSGNCCFMDREKLPSALKMPLAK-FTDA-----KFRYMCILSGCDYWTGIKGMG 176
++ L S + +KLP + L + F D +F +CIL G DY I+G+G
Sbjct: 190 LLRHLTAS------EAKKLPIQ-EFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIG 242
Query: 177 LKKAKDYV 184
K+A D +
Sbjct: 243 PKRAIDLI 250
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 134 (52.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 40/117 (34%), Positives = 54/117 (46%)
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
R S +VT M V + G+ I AP EA+AQ A L D +IT+DSD+ +FG
Sbjct: 762 RDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGG 821
Query: 121 KKIIYKLDLSGNCC-FMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 176
KI + N F D E + L + + + L G DY G+KGMG
Sbjct: 822 TKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIE-----LAQLLGSDYTNGLKGMG 873
Score = 61 (26.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEAT----EEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQ 62
LL I+ + VFDG K T +E R+ KR+S K+ A +LL L + + +++
Sbjct: 65 LLYFGIRPVFVFDGGVPVLKRETIRQRKERRQGKRESAKSTARKLLALQLQNGSNDNVKN 124
Query: 63 S 63
S
Sbjct: 125 S 125
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 126 (49.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 54 SEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDS 113
S+ + R + +VT M Q R G+ I AP EA+AQ A L G D +IT+DS
Sbjct: 792 SQQKKDRRDADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDS 851
Query: 114 DLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 173
D+ +FG ++ YK ++ +++ L + L+ A + +L G DY GI
Sbjct: 852 DIFLFGGTRV-YK-NMFNQSKYVECY-LTADLEKEYALHRRKLISFAHLL-GSDYTEGIP 907
Query: 174 GMG 176
G+G
Sbjct: 908 GIG 910
Score = 63 (27.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAE----LLI--LDRGSEAQSHL 60
LL IK + VFDG K T +R+K+R+ + A + LL L R +E +S
Sbjct: 65 LLYFGIKPVFVFDGGAPVLKRQTIANRKKRREGRREDAVQTASKLLAVQLQRTAEQESAK 124
Query: 61 RQS 63
R+S
Sbjct: 125 RRS 127
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 51/179 (28%), Positives = 81/179 (45%)
Query: 12 IKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSE--AQSHLRQSVDVTHK 69
IK VFDG+ P ++ E +R R KA+ + + G+ +++V VT +
Sbjct: 80 IKPCFVFDGKP-PTLKSGELAKRVARHQ-KAREDQEETKEVGTAEMVDRFAKRTVKVTRQ 137
Query: 70 MALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDL 129
+ G+ + AP EA+AQ A L +G +ED D L F A ++ L
Sbjct: 138 HNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTF 197
Query: 130 SGN----CCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 184
S + EK + L M + +F D +CIL GCDY I+G+G +A + +
Sbjct: 198 SEQRKEPISEYNIEKALNGLDMSVEQFVD-----LCILLGCDYCEPIRGVGPARAVELI 251
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 52/171 (30%), Positives = 77/171 (45%)
Query: 12 IKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGS--EAQSHLRQSVDVTHK 69
IK + VFDG P ++ E RR +R + E + G+ + + R++V VT +
Sbjct: 79 IKPLYVFDGAP-PKLKSGELARRYQRKQEALEGLEEA-RETGTAEDVEKFSRRTVRVTRE 136
Query: 70 MALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDL 129
Q + G+ I+AP EA+AQ A L AG +ED D L F + ++ L
Sbjct: 137 HNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTF 196
Query: 130 SGNCCFMDRE----KLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 176
S +E K+ L M +F D +CIL GCDY I +G
Sbjct: 197 SEARKEPIQEIHVDKVLEGLDMDRKQFVD-----LCILLGCDYLDPIPKVG 242
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 121 (47.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 75 IQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCC 134
+Q GV + A EA+A AYLN G+ D IT D D+ ++GA+ + ++
Sbjct: 75 LQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKLS 134
Query: 135 FMDREK---LPSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
F + S++K L ++ + +L GCDY GI G+G ++A
Sbjct: 135 FKEPHLDCYTMSSIKEKLGCDRESLIG-LAVLLGCDYLPKGIPGVGKEQA 183
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 56/182 (30%), Positives = 82/182 (45%)
Query: 12 IKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGS--EAQSHLRQSVDVTHK 69
IK + VFDG P K + E ++ H+A A + G+ + + R++V VT +
Sbjct: 79 IKPLYVFDGA--PPKLKSGELAKRSARKHEATEAHEEAKETGTAEDVEKFSRRTVRVTRE 136
Query: 70 MALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDL 129
+ + G+ I AP EA+AQ A L AG +ED D L F A ++ L
Sbjct: 137 HNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTF 196
Query: 130 SGNCCFMDRE-KLPSALK---MPLAKFTDAKFRYMCILSGCDYWTGIKGMG----LKKAK 181
S +E L AL+ M +F D +CIL GCDY I +G LK +
Sbjct: 197 SEQRKEPIQEIHLNRALEGLGMDRNQFID-----LCILLGCDYLEPIPKVGPNTALKLIR 251
Query: 182 DY 183
D+
Sbjct: 252 DH 253
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 132 (51.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 48/180 (26%), Positives = 86/180 (47%)
Query: 4 IHMLLAHKIKVIMVFDGR--HLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLR 61
I L +K++ V +G HL A ++ ++ + S K + + +SH +
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGKTWSQKT--------GRSHFK 111
Query: 62 QSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAK 121
+ K L++++ C G+ + A EA+A AYLN +GY D +T D D ++GA+
Sbjct: 112 SVL----KECLDMLE-CL--GIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQ 164
Query: 122 KIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
+ ++ +D + S++K L DA + IL GCDY G+ G+G ++A
Sbjct: 165 TVYRNFTMNTKDPHVDCYTM-SSIKSKLGLNRDALVG-LAILLGCDYLPKGVPGVGKEQA 222
>CGD|CAL0001028 [details] [associations]
symbol:orf19.652 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 CGD:CAL0001028 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15339 EMBL:AACQ01000173
RefSeq:XP_711995.1 ProteinModelPortal:Q59QM2 GeneID:3646389
KEGG:cal:CaO19.652 Uniprot:Q59QM2
Length = 684
Score = 122 (48.0 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 55/200 (27%), Positives = 89/200 (44%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
M I L+ I VI+VFDG P K ++E+ ++ + L ++ SE +
Sbjct: 67 MAKILALVGLNISVIVVFDGILKPLKLKSKENEGL---IYEDELQRLALISNYSEYNPFV 123
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
V + +++ N I+ + AP E +AQ AYL G DYVI++D D LVFGA
Sbjct: 124 ---VQLKIELSNNKIEY--------VQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFGA 172
Query: 121 KKII-----YKLDLSGNCC-FMDREKLPSALKMPL--------AKFTDAKFRYMCILSGC 166
++++ + D+ + D S P+ T ++ ++ L G
Sbjct: 173 RRVLRNFSRFAEDIGKSPPKSSDITARSSYYVTPVDMDKVEQETGLTTSRLVFLASLRGG 232
Query: 167 DYWTGIKGMGLKKAKDYVFS 186
DY G K MG+ AK+ S
Sbjct: 233 DYSVGAKKMGIVNAKNLALS 252
Score = 47 (21.6 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 258 SLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEE 294
S+ EL+ P D+A LD F+ + D+ N D+EE
Sbjct: 607 SIPELK-PNDKAIIEDNPFLDSFNSTKEDERNKDNEE 642
Score = 41 (19.5 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 191 DFENALRKINVYGK------IGSYVKITKEFLTSFHNTNLMFLYQPVYDPV 235
+F++ L+K+N Y K G V +EF + T +++L+ V D V
Sbjct: 318 NFDSLLKKMNFYLKEQNRDIFGRKVTFQEEFEFDEYYT-MLYLFPLVSDQV 367
Score = 41 (19.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/90 (22%), Positives = 38/90 (42%)
Query: 178 KKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSK 237
+K D+ F + + ENA++ I + FL SF++T + + +
Sbjct: 588 QKQLDF-FLVKQNNKENAMKSIPELKPNDKAIIEDNPFLDSFNSTKEDERNKDNEEVKQQ 646
Query: 238 EVVPLNPLESEMRDEV-FSQLSLKELELPK 266
E NP+E + +E S+L+ L +
Sbjct: 647 EEEKSNPIEKTITEESDSSELTFPTFSLDR 676
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 128 (50.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 40/129 (31%), Positives = 62/129 (48%)
Query: 54 SEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDS 113
S+ Q R + VT +M L + R G+ I AP EA+AQ A L++ IT+DS
Sbjct: 769 SQKQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDS 828
Query: 114 DLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 173
D+ +FGA+ + YK S N + + ++ L + +K + L G DY GI
Sbjct: 829 DVWLFGARHV-YKNFFSRNKYVEYYQYIDFQNQLGLDR---SKLINLAYLLGSDYTEGIP 884
Query: 174 GMGLKKAKD 182
+G A +
Sbjct: 885 NVGFVTAME 893
Score = 47 (21.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDS---HKAKAAELLI 49
LL +I+ + VFDG K T RR +++ K AE L+
Sbjct: 65 LLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKLL 110
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 23 LPAKEATEEDRRKKRDSHKAKAAELLI 49
LPA E +E+R S + + E+L+
Sbjct: 587 LPATEGPKEEREGASQSEDSDSDEMLL 613
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 128 (50.1 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 40/129 (31%), Positives = 62/129 (48%)
Query: 54 SEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDS 113
S+ Q R + VT +M L + R G+ I AP EA+AQ A L++ IT+DS
Sbjct: 700 SQKQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDS 759
Query: 114 DLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 173
D+ +FGA+ + YK S N + + ++ L + +K + L G DY GI
Sbjct: 760 DVWLFGARHV-YKNFFSRNKYVEYYQYIDFQNQLGLDR---SKLINLAYLLGSDYTEGIP 815
Query: 174 GMGLKKAKD 182
+G A +
Sbjct: 816 NVGFVTAME 824
Score = 47 (21.6 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDS---HKAKAAELLI 49
LL +I+ + VFDG K T RR +++ K AE L+
Sbjct: 65 LLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKLL 110
Score = 40 (19.1 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 253 VFSQLSLKELELPKDQAFQLA 273
V QL+L++ +L D F+LA
Sbjct: 928 VIKQLNLQQTQLRIDSFFRLA 948
>GENEDB_PFALCIPARUM|PF10_0080 [details] [associations]
symbol:PF10_0080 "endonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 39/167 (23%), Positives = 76/167 (45%)
Query: 35 KKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADA 94
+K++ K E+++ + G + + K A ++ + + +A+
Sbjct: 189 EKKNLKKKNQMEIIVDEDGIHDLFKKNIFIKINSKTANDIYNYLLLENIPIFITKNDAEK 248
Query: 95 QMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTD 154
+ A + + D V+++D+D L FGA +I + +++E+L + L + +F D
Sbjct: 249 ECA-IQCSHERDIVVSDDTDALAFGAPNLIRFITNKKKRHIINKEELLNELNINYEQFID 307
Query: 155 AKFRYMCILSGCDYWTGIKGMGLKKAKDYV--FSIMDPDFE-NALRK 198
CILSGCDY I G+G KA + + + ++ E NA K
Sbjct: 308 -----FCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNK 349
>UNIPROTKB|Q8IJW1 [details] [associations]
symbol:PF10_0080 "Endonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 39/167 (23%), Positives = 76/167 (45%)
Query: 35 KKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADA 94
+K++ K E+++ + G + + K A ++ + + +A+
Sbjct: 189 EKKNLKKKNQMEIIVDEDGIHDLFKKNIFIKINSKTANDIYNYLLLENIPIFITKNDAEK 248
Query: 95 QMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTD 154
+ A + + D V+++D+D L FGA +I + +++E+L + L + +F D
Sbjct: 249 ECA-IQCSHERDIVVSDDTDALAFGAPNLIRFITNKKKRHIINKEELLNELNINYEQFID 307
Query: 155 AKFRYMCILSGCDYWTGIKGMGLKKAKDYV--FSIMDPDFE-NALRK 198
CILSGCDY I G+G KA + + + ++ E NA K
Sbjct: 308 -----FCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNK 349
>SGD|S000000843 [details] [associations]
symbol:YEN1 "Holliday junction resolvase" species:4932
"Saccharomyces cerevisiae" [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA;IGI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IMP;IDA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 SGD:S000000843 EMBL:U18796
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
EMBL:BK006939 GO:GO:0008821 GO:GO:0000014 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:U13615 PIR:S50544
RefSeq:NP_010959.2 ProteinModelPortal:P40028 DIP:DIP-6450N
IntAct:P40028 MINT:MINT-680602 STRING:P40028 EnsemblFungi:YER041W
GeneID:856764 KEGG:sce:YER041W CYGD:YER041w HOGENOM:HOG000142381
KO:K15339 OMA:WLFECGF OrthoDB:EOG4MWCG5 NextBio:982941
Genevestigator:P40028 GermOnline:YER041W Uniprot:P40028
Length = 759
Score = 102 (41.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 27/121 (22%), Positives = 59/121 (48%)
Query: 7 LLAHKIKVIMVFDGRHLPA--KEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSV 64
LL+ ++ ++VFDG P+ ++ E D K + + E + + +
Sbjct: 106 LLSLNVEFLLVFDGVMKPSFKRKFNHEQNATTCDDEKEYYSSWEQHVKNHEVYGNCKGLL 165
Query: 65 DVTHKMALNVIQACR-ARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKI 123
+ +++++ + ++A E +AQ +L ++G D++++ DSD LVFG +KI
Sbjct: 166 APSDPEFISLVRKLLDLMNISYVIACGEGEAQCVWLQVSGAVDFILSNDSDTLVFGGEKI 225
Query: 124 I 124
+
Sbjct: 226 L 226
Score = 70 (29.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 141 LPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 192
LP K+ KF + +L G DY G+KG+G K+ DP+F
Sbjct: 262 LPKINKVAGKKFDRLSLLFFSVLLGADYNRGVKGLGKNKSLQLA-QCEDPNF 312
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 47/174 (27%), Positives = 73/174 (41%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDV 66
++ + IK VFDG+ K R +R + K AE E R+ V V
Sbjct: 75 MIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATT---ELEKMKQERRLVKV 131
Query: 67 THKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYK 126
+ + + G+ I+AP EA+AQ A L G +ED D L + ++
Sbjct: 132 SKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRH 191
Query: 127 LDLSGN----CCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 176
L S +D E + L + + +F D +CI+ GCDY I+G+G
Sbjct: 192 LTFSEAKKEPIHEIDTELVLRGLDLTIEQFVD-----LCIMLGCDYCESIRGVG 240
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 57/212 (26%), Positives = 84/212 (39%)
Query: 4 IHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQS 63
I LL KI I+VFD ++ A + E + D + E + R S S
Sbjct: 61 IQRLLELKIIPIVVFD--NINASSSAHESK----DQN-----EFVPRKRRSFGDSPFTNL 109
Query: 64 VDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKI 123
VD +K N + G+ I+AP + +AQ A L G IT D D +FG K +
Sbjct: 110 VDHVYKT--NALLT--ELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNL 165
Query: 124 IYKLDL----SGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLK 178
Y+ D S C D L K + IL GCDY+ G++ +G+
Sbjct: 166 -YRFDFTAGTSSTACLHDIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIV 224
Query: 179 KAKDYVFSIMDPDFENALRKINVYGKIGSYVK 210
D + D E + + + SYV+
Sbjct: 225 SVFDILGEFGDDGNEEIDPHV-ILDRFASYVR 255
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 220 HNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAF-QLAL 274
HN M+L +P PVS E+ + P + + +++ +KE P + +LAL
Sbjct: 289 HNAITMYL-RP---PVSSEIPKIIPRAANFQQ--VAEIMMKECGWPATRTQKELAL 338
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 115 (45.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 39/129 (30%), Positives = 61/129 (47%)
Query: 54 SEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDS 113
++ Q R + VT +M L + R GV I AP EA+AQ A L++ IT+DS
Sbjct: 751 AQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDS 810
Query: 114 DLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 173
D+ +FGA+ + YK + N + + ++ L + K + L G DY GI
Sbjct: 811 DIWLFGARHV-YKNFFNKNKFVEYYQYVDFYSQLGLDR---NKLINLAYLLGSDYTEGIP 866
Query: 174 GMGLKKAKD 182
+G A +
Sbjct: 867 TVGCVTAME 875
Score = 56 (24.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDS 39
LL +I+ I VFDG K+ T RR+++DS
Sbjct: 65 LLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDS 97
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 118 (46.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 49/178 (27%), Positives = 80/178 (44%)
Query: 25 AKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSV--DVTHKMALNVIQACRARG 82
A+++ E + D +A + LL +AQ ++ V VT +M L + R G
Sbjct: 737 AEDSLHEWQDIDLDELEALESNLLTQQNTLKAQKQQQERVAATVTGQMFLESQELLRLFG 796
Query: 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLP 142
+ I AP EA+AQ A L++ IT+DSD+ +FGA+ + YK + N + +
Sbjct: 797 IPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHV-YKNFFNKNKFVEYYQYVD 855
Query: 143 SALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKIN 200
++ L + K + L G DY GI +G A + + E LRK +
Sbjct: 856 FHNQLGLDR---NKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLE-PLRKFS 909
Score = 53 (23.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRD 38
LL +I+ I VFDG K+ T RR K+D
Sbjct: 65 LLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKD 96
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKL 141
G+ + A EA+A AYLN G+ D +T D D ++GA+ + ++ +D +
Sbjct: 125 GIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMNTKDPHVDCYTM 184
Query: 142 PSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
S++K L DA + IL GCDY G+ G+G ++A
Sbjct: 185 -SSIKSKLGLDRDALVG-LAILLGCDYLPKGVPGVGKEQA 222
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 123 (48.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 75 IQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCC 134
+Q GV + A EA+A AYLN G+ D IT D D+ ++GA+ + ++
Sbjct: 53 LQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEP 112
Query: 135 FMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
+D + S++K L ++ + +L GCDY GI G+G ++A
Sbjct: 113 HLDCYTM-SSIKEKLGCDRESLIG-LAVLLGCDYLPKGIPGVGKEQA 157
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 266 KDQAFQLALGNLDPFSLEEMDQWNPDSE-ENLP 297
K+QA +L L+ +QW SE +N P
Sbjct: 154 KEQALKLIETLRGQNLLQRFEQWKEQSEHDNNP 186
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 118 (46.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 49/178 (27%), Positives = 80/178 (44%)
Query: 25 AKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSV--DVTHKMALNVIQACRARG 82
A+++ E + D +A + LL +AQ ++ V VT +M L + R G
Sbjct: 1151 AEDSLHEWQDIDLDELEALESNLLTQQNTLKAQKQQQERVAATVTGQMFLESQELLRLFG 1210
Query: 83 VDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLP 142
+ I AP EA+AQ A L++ IT+DSD+ +FGA+ + YK + N + +
Sbjct: 1211 IPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHV-YKNFFNKNKFVEYYQYVD 1269
Query: 143 SALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKIN 200
++ L + K + L G DY GI +G A + + E LRK +
Sbjct: 1270 FHNQLGLDR---NKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLE-PLRKFS 1323
Score = 53 (23.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRD 38
LL +I+ I VFDG K+ T RR K+D
Sbjct: 489 LLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKD 520
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00039
Identities = 36/118 (30%), Positives = 55/118 (46%)
Query: 73 NVIQACR----ARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLD 128
+V++ C + G+ C+ P EA+A A+LN G D VI++DSD +GA ++
Sbjct: 121 HVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFS 180
Query: 129 LS---------GNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMG 176
+S G D ++ S + F K M +L GCDY GI G+G
Sbjct: 181 VSTQGAQAAAGGAVDIYDMREITSRMD-----FGQQKIIVMALLCGCDYCPDGIGGIG 233
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKL 141
G+ + A EA+A AYLN +G+ D +T D D ++GA+ + ++ +D
Sbjct: 125 GIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTA 184
Query: 142 PSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
S++K L DA + IL GCDY G+ G+G ++A
Sbjct: 185 -SSIKSKLGLDRDALVG-LAILLGCDYLPKGVPGVGKEQA 222
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKL 141
G+ + A EA+A AYLN +G+ D +T D D ++GA+ + ++ +D +
Sbjct: 125 GMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTI 184
Query: 142 PSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
S++K L DA + +L GCDY G+ G+G ++A
Sbjct: 185 -SSIKSKLGLDRDALVG-LAVLLGCDYLPKGVPGVGKEQA 222
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 101 (40.6 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 51/204 (25%), Positives = 91/204 (44%)
Query: 21 RH-LPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSV--DVTHKMALNVIQA 77
+H +P+++ E ++ D +A L+ D HL S D T ++ ++ +
Sbjct: 421 KHKVPSEDEEIEWDPQRYDKPSTSSAPALMED-----YIHLNYSDEDDKTPELYRDLQEF 475
Query: 78 CRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMD 137
G+ I +P EA+AQ L G D V+++DSD+ FGA+ + Y+ S N
Sbjct: 476 LTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHV-YRHMFSKNRRVQR 534
Query: 138 REKLPSALKMPLAKFTDAKFRYMCI--LSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENA 195
+ +A + F + Y+ I LSG DY G+ +G A + V ++ +N
Sbjct: 535 YGEQTTANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELVSEYVECRIDNT 594
Query: 196 LRKINVYGKIGSYVK-ITKEFLTS 218
+ +I +K + FLT+
Sbjct: 595 NDLKVIENRIMRLLKNVESLFLTA 618
Score = 64 (27.6 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 7 LLAHKIKVIMVFDGRHLPA-KEATEEDRRKKRDS 39
LL +KI+ + VFDG +P K E RR+KR +
Sbjct: 61 LLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQN 94
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
Identities = 35/116 (30%), Positives = 56/116 (48%)
Query: 75 IQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDL----S 130
+Q GV + A EA+A AYLN G+ D IT D D+ ++GA+ + + S
Sbjct: 128 LQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKSS 187
Query: 131 GNCCFMDREK-----LPSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
C + +E S++K L ++ + +L GCDY GI G+G ++A
Sbjct: 188 QKCTWKLKEPHLDCYTMSSIKEKLGCDRESLIG-LAVLLGCDYLPKGIPGVGKEQA 242
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKL 141
G+ + A EA+A AYLN +G+ D +T D D ++GA+ + ++ +D +
Sbjct: 125 GMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTV 184
Query: 142 PSALKMPLAKFTDAKFRYMCILSGCDYWT-GIKGMGLKKA 180
S++K L DA + +L GCDY G+ G+G ++A
Sbjct: 185 -SSIKSKLGLDRDALVG-LAVLLGCDYLPKGVPGVGKEQA 222
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 117 (46.2 bits), Expect = 0.00065, P = 0.00065
Identities = 49/189 (25%), Positives = 84/189 (44%)
Query: 4 IHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEA--QSHLR 61
+ L+A +I+V DG +P + RR K A I D G E ++ L+
Sbjct: 61 LRALIALNCSIILVSDGA-IPGIKVPTYKRRLK--------ARFEIADDGVEPSKETSLK 111
Query: 62 QSVDVTHKMALNVIQACRAR-GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+++ + + + G+ C+ EA+AQ A LN D + DSD+ +FGA
Sbjct: 112 RNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGA 171
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
K + ++ L + E K+ L + + + +L G DY G++G+ +KA
Sbjct: 172 KTVYREICLGEGGYVVCYEMDDIKKKLGLGRNS---LIALALLLGSDYSQGVRGLRQEKA 228
Query: 181 KDYVFSIMD 189
+ V SI D
Sbjct: 229 CELVRSIGD 237
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 53/177 (29%), Positives = 84/177 (47%)
Query: 39 SHKAKA-AELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMA 97
S +A+A A+ L+ R ++ ++ V++ + + V+ RA+G E +A A
Sbjct: 106 STEAEASADALVQPRNAKFTRYVEDCVELLEYLGMPVL---RAKG--------EGEALCA 154
Query: 98 YLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-----CFMDREKLPSALKMPLAKF 152
LN G+ D IT DSD +FGAK +I K+ L NC C+ + + S L + +
Sbjct: 155 QLNNQGHVDACITSDSDAFLFGAKTVI-KV-LRSNCKEPFECY-NMADIESGLGLKRKQM 211
Query: 153 TDAKFRYMCILSGCDY-WTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSY 208
M +L G D+ G+ G G + A +V + D D N L K+ GK G Y
Sbjct: 212 VA-----MALLVGSDHDLHGVPGFGPETALRFV-QLFDED--NVLAKLYEIGK-GVY 259
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 115 (45.5 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 54 SEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDS 113
++ Q R + VT +M L + R G+ I AP EA+AQ A L++ IT+DS
Sbjct: 753 AQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDS 812
Query: 114 DLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 173
D+ +FGA+ + YK + N + + ++ L + K + L G DY GI
Sbjct: 813 DIWLFGARHV-YKNFFNKNKFVEYYQYVDFHNQLGLDR---NKLINLAYLLGSDYTEGIP 868
Query: 174 GMGLKKAKD 182
+G A +
Sbjct: 869 TVGCVTAME 877
Score = 50 (22.7 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRD 38
LL +I+ I VFDG K+ T RR ++D
Sbjct: 65 LLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKD 96
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 118 (46.6 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 57 QSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLL 116
Q R S VT +M + R GV IVAP EA+AQ A L+ IT+DSD+
Sbjct: 645 QQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIW 704
Query: 117 VFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 176
+FG + + Y+ + N +++ ++ ++ L +K + L G DY GI G+G
Sbjct: 705 LFGGRHV-YRNFFNQNK-YVEHYQIVD-MQNQLG-LDRSKLINLAYLLGSDYTEGIPGVG 760
Score = 45 (20.9 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 7 LLAHKIKVIMVFDGRHLPAKEATEEDRRKKRD 38
LL +I+ + V+DG K+ T RR++R+
Sbjct: 65 LLFFRIRPVFVYDGDAPLLKKQTLAVRRQRRE 96
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 336 325 0.00087 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 79
No. of states in DFA: 615 (65 KB)
Total size of DFA: 228 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.40u 0.08s 27.48t Elapsed: 00:00:04
Total cpu time: 27.41u 0.09s 27.50t Elapsed: 00:00:04
Start: Thu Aug 15 11:19:37 2013 End: Thu Aug 15 11:19:41 2013