RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11827
(336 letters)
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 207
Score = 116 bits (291), Expect = 8e-32
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
LL + I I VFDG KE T + RR+ ++ + K E + + EA +
Sbjct: 61 FYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYA 120
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
++ +T KM N G+ + AP E +AQ +Y+ G V+++D D L++GA
Sbjct: 121 KRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGA 180
Query: 121 KKIIYKLDLSGNCC-FMDREKLPSALK 146
+++ L + ++ ++ L+
Sbjct: 181 PRVVRNLTTTKEMPELIELNEVLEDLR 207
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 217
Score = 110 bits (276), Expect = 2e-29
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
+ + ++ I+ + VFDG K+A + RKKR + + + +A+ +
Sbjct: 60 LYRVSNMVEVGIRPVFVFDGEPPEFKKAEI-EERKKRRAEAEEMWIAALQAGDKDAKKYA 118
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+ + V + + G+ + AP E +AQ AY+ G +Y ++D D L+FG+
Sbjct: 119 QAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGS 178
Query: 121 KKIIYKLDLSGN 132
++ L ++G
Sbjct: 179 PRLARNLAITGK 190
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 107 bits (267), Expect = 3e-28
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
L+ IK + VFDG K+ E RR+ R+ + K E L EA+ +
Sbjct: 61 FYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYA 120
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
+++ V + + + G+ + AP E +AQ AY+ G ++D D L+FGA
Sbjct: 121 QRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGA 180
Query: 121 KKIIYKLDLSGNCCFMDREK 140
+++ L ++G +
Sbjct: 181 PRLVRNLTITGKRKLPGKNV 200
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 216
Score = 104 bits (260), Expect = 3e-27
Identities = 32/134 (23%), Positives = 52/134 (38%)
Query: 1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
++ + IK + VFDG+ K R ++R + + + E +
Sbjct: 67 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFT 126
Query: 61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
++ V VT + G+ + AP EA+A A L AG TED D L FG+
Sbjct: 127 KRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGS 186
Query: 121 KKIIYKLDLSGNCC 134
++ L S
Sbjct: 187 PVLMRHLTASEAKK 200
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 54.6 bits (131), Expect = 5e-10
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 156 KFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEF 215
+F +CIL G DY I+G+G K+A D + E +R+++ K
Sbjct: 5 QFVDLCILLGSDYCESIRGIGPKRAVDLI--QKHKSIEEIVRRLD-------PNKYPVPE 55
Query: 216 LTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALG 275
+ +FL V DP S E+ P E E+ + + E + +
Sbjct: 56 NWLHKEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFSEERI--RSGVKRLSK 113
Query: 276 NLDPFSLEEMDQW 288
+ + +D +
Sbjct: 114 SRQGSTQGRLDDF 126
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 35.3 bits (81), Expect = 0.002
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 17/112 (15%)
Query: 153 TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKIT 212
T + + IL G DY G+KG+G+KK AL I YG I +K
Sbjct: 2 TREQLIDIAILVGTDYNEGVKGVGVKK---------------ALNYIKTYGDIFRALKAL 46
Query: 213 KEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELEL 264
K + FL PV D E + + + + + +
Sbjct: 47 KVNIDHVEEIRNFFLNPPVTDDYRIEFREPD--FEKAIEFLCEEHDFSRERV 96
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 34.5 bits (79), Expect = 0.005
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 153 TDAKFRYMCILSGCDY-WTGIKGMGLKKA 180
T K + IL G DY GIKG+GLKKA
Sbjct: 2 TREKLIELAILVGTDYNPGGIKGIGLKKA 30
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 167
Score = 31.0 bits (69), Expect = 0.13
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 6/71 (8%)
Query: 46 ELLILDRGSEAQSHLRQSVDVTHKMALNV------IQACRARGVDCIVAPFEADAQMAYL 99
+ +S +A+ V A G P + +
Sbjct: 84 ASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIA 143
Query: 100 NIAGYADYVIT 110
+ Y D V+
Sbjct: 144 EVKLYGDVVLR 154
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 108
Score = 29.4 bits (66), Expect = 0.22
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 153 TDAKFRYMCILSGCDY-WTGIKGMGLKKA 180
+ + I G DY G+KG+G K+A
Sbjct: 2 SLDDLIDIAIFMGTDYNPGGVKGIGFKRA 30
>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Corn (Zea mays) [TaxId: 4577]}
Length = 172
Score = 28.3 bits (62), Expect = 0.80
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 6/79 (7%)
Query: 38 DSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNV------IQACRARGVDCIVAPFE 91
A L + A+ +AL V +A A G P +
Sbjct: 71 AHGADAATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVD 130
Query: 92 ADAQMAYLNIAGYADYVIT 110
+ Y D V+
Sbjct: 131 LGRGFRLAEVELYGDVVLR 149
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 28.3 bits (63), Expect = 1.2
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 301 IWSKQYEKPCDRHSSEESVSEPPVFQKL 328
IWS Y+ C F +L
Sbjct: 146 IWSTIYQDNCFTIGETGESLAKDAFYRL 173
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 27.0 bits (60), Expect = 3.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 125 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAK 156
Y+ D GN FMD +PS L +P ++ +
Sbjct: 286 YETDGMGNYNFMDDANVPSLLSIPYLEYKGIE 317
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 27.0 bits (60), Expect = 3.6
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 125 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAK 156
+++D GN MD +PS + +P
Sbjct: 295 FEVDGFGNQLLMDDANVPSLIALPYLGDVKVT 326
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 26.5 bits (57), Expect = 5.2
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 148 PLAKFTDAKFRYMCILSGCD-YWT 170
P+A +TD+ FR + G D ++
Sbjct: 7 PMAGYTDSAFRTLAFEWGADFAFS 30
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase
UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Length = 240
Score = 26.1 bits (56), Expect = 6.0
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 73 NVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLV 117
+I+A R G++ +V D + DY+ + DL
Sbjct: 185 GIIEASRKAGLEIMVYYGGDDMAVHREIATSDVDYINLDRPDLFA 229
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,257,582
Number of extensions: 59601
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 18
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)