BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11828
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna (Complex Ii)
pdb|3QEB|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna And Mn2+ (Complex Iii)
Length = 352
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 182 GARNEGRSLLSAVTER-------NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFM 234
AR++G L A E N AG +ITEDSDLL FG KK+I K+D GN +
Sbjct: 136 AARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEI 195
Query: 235 DREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 290
D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA + +PD
Sbjct: 196 DQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDI 250
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 71 AELLHSG-SSIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGI 129
++LL G +I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY + +
Sbjct: 172 SDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSL 230
Query: 130 KGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKIT 169
+G+GL KA + +PD + V KIG Y+K+
Sbjct: 231 RGIGLAKACKVLRLANNPDI------VKVIKKIGHYLKMN 264
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKE 52
YV +CMK++NMLL+H IK I+VFDG LP+K+
Sbjct: 55 YVGFCMKFVNMLLSHGIKPILVFDGCTLPSKK 86
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
pdb|3QE9|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
Length = 352
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 182 GARNEGRSLLSAVTER-------NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFM 234
AR++G L A E N AG +ITEDS LL FG KK+I K+D GN +
Sbjct: 136 AARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGNGLEI 195
Query: 235 DREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 290
D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA + +PD
Sbjct: 196 DQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDI 250
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 68 QKAAELLHSGSSIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWT 127
+ +A L +I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY +
Sbjct: 170 EDSALLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLS 228
Query: 128 GIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKIT 169
++G+GL KA + +PD + V KIG Y+K+
Sbjct: 229 SLRGIGLAKACKVLRLANNPDI------VKVIKKIGHYLKMN 264
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKE 52
YV +CMK++NMLL+H IK I+VFDG LP+K+
Sbjct: 55 YVGFCMKFVNMLLSHGIKPILVFDGCTLPSKK 86
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
Length = 336
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 160 GKIGSYVKITKEFLTSGAPQPF-GARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGA 218
G++ Y+ + + L S PF A +EG + + + + G +Y ++D D L+FG+
Sbjct: 124 GRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAK---GDVEYTGSQDYDSLLFGS 180
Query: 219 KK------IIYKLDLSGNCCFMDREKLPSALKMPLAKF--TDAKFRYMCILSGCDYWTGI 270
+ I K L G ++D + L+ L + T + + IL G DY G+
Sbjct: 181 PRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGV 240
Query: 271 KGMGLKKAKDYVFSIMD 287
KG+G+KKA +Y+ + D
Sbjct: 241 KGVGVKKALNYIKTYGD 257
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 117 MCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
+ IL G DY G+KG+G+KKA +Y+ + D
Sbjct: 228 IAILVGTDYNEGVKGVGVKKALNYIKTYGD 257
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 21/96 (21%)
Query: 208 TEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPS-----ALKMPL---------AKFTDA 253
++D D L+FGA +++ L ++G + KLP +K L K T
Sbjct: 171 SQDYDSLLFGAPRLVRNLTITG------KRKLPGKNVYVEIKPELIILEEVLKELKLTRE 224
Query: 254 KFRYMCILSGCDYWTG-IKGMGLKKAKDYVFSIMDP 288
K + IL G DY G IKG+GLKKA + V DP
Sbjct: 225 KLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDP 260
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 108 KFTDAKFRYMCILSGCDYWTG-IKGMGLKKAKDYVFSIMDP 147
K T K + IL G DY G IKG+GLKKA + V DP
Sbjct: 220 KLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDP 260
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ ++ L S A K+P+ +F
Sbjct: 168 AGKVYAAATEDMDCLTFGSPVLMRHLTAS------------EAKKLPIQEFHLSRILQEL 215
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 282
+F +CIL G DY I+G+G K+A D +
Sbjct: 216 GLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 249
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+ M A K+P+ +F +F +CIL G DY I+G+G K+
Sbjct: 185 GSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKR 244
Query: 137 AKDYV 141
A D +
Sbjct: 245 AVDLI 249
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ ++ L S A K+P+ +F
Sbjct: 168 AGKVYAAATEDMDCLTFGSPVLMRHLTAS------------EAKKLPIQEFHLSRILQEL 215
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 282
+F +CIL G DY I+G+G K+A D +
Sbjct: 216 GLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 249
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+ M A K+P+ +F +F +CIL G DY I+G+G K+
Sbjct: 185 GSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKR 244
Query: 137 AKDYV 141
A D +
Sbjct: 245 AVDLI 249
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED L FG+ ++ L S A K+P+ +F
Sbjct: 168 AGKVYAAATEDMACLTFGSPVLMRHLTAS------------EAKKLPIQEFHLSRILQEL 215
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 282
+F +CIL G DY I+G+G K+A D +
Sbjct: 216 GLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 249
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+ M A K+P+ +F +F +CIL G DY I+G+G K+
Sbjct: 185 GSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKR 244
Query: 137 AKDYV 141
A D +
Sbjct: 245 AVDLI 249
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 21/96 (21%)
Query: 208 TEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPS-----ALKMPLA---------KFTDA 253
++D D L+FGA ++I L ++G + K+P +K L K T
Sbjct: 171 SQDYDSLLFGAPRLIRNLTITG------KRKMPGKDVYVEIKPELVVLDEVLKELKITRE 224
Query: 254 KFRYMCILSGCDYWTG-IKGMGLKKAKDYVFSIMDP 288
K + IL G DY G +KG+G KKA + V DP
Sbjct: 225 KLIELAILVGTDYNPGGVKGIGPKKALEIVRYSRDP 260
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 108 KFTDAKFRYMCILSGCDYWTG-IKGMGLKKAKDYVFSIMDP 147
K T K + IL G DY G +KG+G KKA + V DP
Sbjct: 220 KITREKLIELAILVGTDYNPGGVKGIGPKKALEIVRYSRDP 260
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCC-FMDREKLPSALKMPLAKFTDAKFRYMCILSGC 264
V+++D D L++GA +++ L + ++ ++ L++ L D + I G
Sbjct: 169 VVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEVLEDLRISLDDLID-----IAIFMGT 223
Query: 265 DYWTG-IKGMGLKKAKDYVFS 284
DY G +KG+G K+A + V S
Sbjct: 224 DYNPGGVKGIGFKRAYELVRS 244
>pdb|3EBY|A Chain A, Crystal Structure Of The Beta Subunit Of A Putative
Aromatic-Ring- Hydroxylating Dioxygenase
(Yp_001165631.1) From Novosphingobium Aromaticivorans
Dsm 12444 At 1.75 A Resolution
Length = 163
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 28/106 (26%)
Query: 152 ALRKINVYGKIGSYVKITKEFLTSGAPQPFGARNEGRSLLSAVTERNIAGYADYVITE-- 209
ALRK NV+ P+ F GR++++ V ++ A YV+ +
Sbjct: 76 ALRKANVF------------------PEHFNRHLIGRAVITGVEGDQVSAEASYVVFQTR 117
Query: 210 -DSDLLVFGAKKIIYKLDLSGN-------CCFMDREKLPSALKMPL 247
D + ++ A K + + DLSG C D ++ + L P+
Sbjct: 118 NDGETRIYNAGKYVDRFDLSGGTVRLKSRTCIYDTLRIATLLATPI 163
>pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
Length = 363
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 23/164 (14%)
Query: 130 KGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGS-YVKITKEFLTSGAPQPFGARNEGR 188
K + + AK Y ++ D E A R + K+ V+ K L + A EG
Sbjct: 109 KAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGE 168
Query: 189 SLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGN-------------CCFMD 235
+ + + ++ A YA ++D D L+FG+ K++ L +SG ++
Sbjct: 169 AQAAYIVKKGDA-YAS--ASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIE 225
Query: 236 REKLPSALKMPLAKFTDAKFRYMCILSGCDYW-TGIKGMGLKKA 278
+KL L + L D + IL G DY G +G+G KKA
Sbjct: 226 LDKLLVQLGITLENLID-----IGILLGTDYNPDGFEGIGPKKA 264
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 116 YMCI--LSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFL 173
+ C+ L GC Y +K++K + +D +NALR++ + +G + + + F
Sbjct: 24 FKCVKRLDGCIY-------AIKRSKKPLAGSVDE--QNALREVYAHAVLGQHSHVVRYFS 74
Query: 174 TSGAPQPFGARNE---GRSLLSAVTER-NIAGYADYVITEDSDLLVFGAKKIIY------ 223
+NE G SL A++E I Y + E DLL+ + + Y
Sbjct: 75 AWAEDDHMLIQNEYCNGGSLADAISENYRIMSY--FKEAELKDLLLQVGRGLRYIHSMSL 132
Query: 224 -KLDLSGNCCFMDREKLPSA 242
+D+ + F+ R +P+A
Sbjct: 133 VHMDIKPSNIFISRTSIPNA 152
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 116 YMCI--LSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFL 173
+ C+ L GC Y +K++K + +D +NALR++ + +G + + + F
Sbjct: 26 FKCVKRLDGCIY-------AIKRSKKPLAGSVDE--QNALREVYAHAVLGQHSHVVRYFS 76
Query: 174 TSGAPQPFGARNE---GRSLLSAVTER-NIAGYADYVITEDSDLLVFGAKKIIY------ 223
+NE G SL A++E I Y + E DLL+ + + Y
Sbjct: 77 AWAEDDHMLIQNEYCNGGSLADAISENYRIMSY--FKEAELKDLLLQVGRGLRYIHSMSL 134
Query: 224 -KLDLSGNCCFMDREKLPSA 242
+D+ + F+ R +P+A
Sbjct: 135 VHMDIKPSNIFISRTSIPNA 154
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 116 YMCI--LSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFL 173
+ C+ L GC Y +K++K + +D +NALR++ + +G + + + F
Sbjct: 26 FKCVKRLDGCIY-------AIKRSKKPLAGSVDE--QNALREVYAHAVLGQHSHVVRYFS 76
Query: 174 TSGAPQPFGARNE---GRSLLSAVTER-NIAGYADYVITEDSDLLVFGAKKIIY------ 223
+NE G SL A++E I Y + E DLL+ + + Y
Sbjct: 77 AWAEDDHMLIQNEYCNGGSLADAISENYRIMSY--FKEAELKDLLLQVGRGLRYIHSMSL 134
Query: 224 -KLDLSGNCCFMDREKLPSA 242
+D+ + F+ R +P+A
Sbjct: 135 VHMDIKPSNIFISRTSIPNA 154
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 116 YMCI--LSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFL 173
+ C+ L GC Y +K++K + +D +NALR++ + +G + + + F
Sbjct: 28 FKCVKRLDGCIY-------AIKRSKKPLAGSVDE--QNALREVYAHAVLGQHSHVVRYFS 78
Query: 174 TSGAPQPFGARNE---GRSLLSAVTER-NIAGYADYVITEDSDLLVFGAKKIIY------ 223
+NE G SL A++E I Y + E DLL+ + + Y
Sbjct: 79 AWAEDDHMLIQNEYCNGGSLADAISENYRIMSY--FKEAELKDLLLQVGRGLRYIHSMSL 136
Query: 224 -KLDLSGNCCFMDREKLPSA 242
+D+ + F+ R +P+A
Sbjct: 137 VHMDIKPSNIFISRTSIPNA 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,074,466
Number of Sequences: 62578
Number of extensions: 544937
Number of successful extensions: 1854
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 32
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)