BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11828
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1
Length = 732
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%)
Query: 198 NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRY 257
N A A Y+ITEDSDL +FGAK II+KLDL+G+ ++ EKL A+ K+ KFR
Sbjct: 159 NRADVAQYIITEDSDLTLFGAKNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRR 218
Query: 258 MCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 290
MCILSGCDY + G+GL KA ++ D
Sbjct: 219 MCILSGCDYLDSLPGIGLAKACKFILKTEQEDM 251
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 20 LYVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSG 77
+Y+ YC+KY+NMLL++ IK I+VFDG+HLPAK TE+ RR+ + + K++AAELL G
Sbjct: 54 VYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTEK-RRRDSRKQSKERAAELLRLG 110
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 74 LHSGSSIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMG 133
L +II+KLDL+G+ ++ EKL A+ K+ KFR MCILSGCDY + G+G
Sbjct: 176 LFGAKNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIG 235
Query: 134 LKKAKDYVFSIMDPDFENALRKINVY 159
L KA ++ D AL+KI Y
Sbjct: 236 LAKACKFILKTEQEDMRIALKKIPSY 261
>sp|Q9QZ11|EXO1_MOUSE Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2
Length = 837
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 198 NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRY 257
N AG VITEDSDLL FG KK+I K+D GN +D+ +L K FT+ KFRY
Sbjct: 159 NKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARL-GMCKQLGDVFTEEKFRY 217
Query: 258 MCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 290
MCILSGCDY ++G+GL KA + +PD
Sbjct: 218 MCILSGCDYLASLRGIGLAKACKVLRLANNPDI 250
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 80 IIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKD 139
+I K+D GN +D+ +L K FT+ KFRYMCILSGCDY ++G+GL KA
Sbjct: 182 VILKMDQFGNGLEVDQARL-GMCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKACK 240
Query: 140 YVFSIMDPDFENALRKINVYGKIGSYVKITKEFLT 174
+ +PD ++KI Y ++ + + ++++T
Sbjct: 241 VLRLANNPDIVKVIKKIGHYLRMN--ITVPEDYIT 273
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKE 52
YV +CMK++NMLL++ +K I++FDG LP+K+
Sbjct: 55 YVGFCMKFVNMLLSYGVKPILIFDGCTLPSKK 86
>sp|Q9UQ84|EXO1_HUMAN Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2
Length = 846
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 182 GARNEGRSLLSAVTER-------NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFM 234
AR++G L A E N AG +ITEDSDLL FG KK+I K+D GN +
Sbjct: 136 AARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEI 195
Query: 235 DREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPD 289
D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA + +PD
Sbjct: 196 DQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPD 249
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 80 IIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKD 139
+I K+D GN +D+ +L ++ FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 182 VILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKACK 240
Query: 140 YVFSIMDPDFENALRKINVYGKIGSYVKIT 169
+ +PD + V KIG Y+K+
Sbjct: 241 VLRLANNPDI------VKVIKKIGHYLKMN 264
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKE 52
YV +CMK++NMLL+H IK I+VFDG LP+K+
Sbjct: 55 YVGFCMKFVNMLLSHGIKPILVFDGCTLPSKK 86
>sp|Q9W6K2|EXO1_XENLA Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1
Length = 734
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 182 GARNEGRSLLSAVTER-------NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFM 234
AR+EG + A E N +A+ +ITEDSDLL FG KK++ K+D GN +
Sbjct: 136 AARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKVLLKMDKFGNGLEI 195
Query: 235 DREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 290
D+ + + FT+ KFRYMCILSGCDY I G+GL KA + +PD
Sbjct: 196 DQARFGMCRSLGDV-FTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDI 250
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 80 IIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKD 139
++ K+D GN +D+ + + FT+ KFRYMCILSGCDY I G+GL KA
Sbjct: 182 VLLKMDKFGNGLEIDQARFGMCRSLGDV-FTEEKFRYMCILSGCDYLPSIHGIGLAKACK 240
Query: 140 YVFSIMDPDFENALRKINVYGKIG 163
+ +PD ++KI Y K
Sbjct: 241 LLKVANNPDITKVIQKIGQYLKTN 264
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSG 77
YV +CMK ++MLL+ +K I+VFDG LP+K+ E+ RR++ + + QK +LL G
Sbjct: 55 YVQFCMKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQT-NLQKGKQLLREG 110
>sp|P53695|EXO1_SCHPO Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo1 PE=1 SV=1
Length = 571
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 204 DYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSG 263
D +ITEDSD+LVFGA+ +++K+D GNC + R + +A + L + K R+M I SG
Sbjct: 165 DGIITEDSDMLVFGAQTVLFKMDGFGNCITIRRNDIANAQDLNL-RLPIEKLRHMAIFSG 223
Query: 264 CDYWTGIKGMGLKKAKDYVFSIMDP 288
CDY G+ GMGLK A Y+ +P
Sbjct: 224 CDYTDGVAGMGLKTALRYLQKYPEP 248
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 73 LLHSGSSIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGM 132
L+ ++++K+D GNC + R + +A + L + K R+M I SGCDY G+ GM
Sbjct: 175 LVFGAQTVLFKMDGFGNCITIRRNDIANAQDLNL-RLPIEKLRHMAIFSGCDYTDGVAGM 233
Query: 133 GLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEF 172
GLK A Y+ +P A+R + + + V KEF
Sbjct: 234 GLKTALRYLQKYPEP--RAAIRAMRLDKSLKVPVSFEKEF 271
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAEL 73
Y+ Y + ML + +K ++VFDG LP K +TE+ R++R +Q+A EL
Sbjct: 55 YLKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKER-----RQEAFEL 102
>sp|Q803U7|EXO1_DANRE Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1
Length = 806
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 198 NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC-----CFMDREKLPSALKMPLAKFTD 252
N + A VITEDSDLL FG KK+I K+D GN C + R K + FT+
Sbjct: 159 NKSDIAQAVITEDSDLLAFGCKKVILKMDKQGNGLEIEQCHLGRCKSLGNI------FTE 212
Query: 253 AKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDF 290
KFRYMCILSGCDY + G+GL KA + +PD
Sbjct: 213 EKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPDI 250
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSG 77
YV+YCMK+++MLL+ +K I+VFDGR+LP+K+ E+ RR+R + + QK +LL G
Sbjct: 55 YVSYCMKFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQA-NLQKGKQLLREG 110
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 80 IIYKLDLSGNC-----CFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGL 134
+I K+D GN C + R K + FT+ KFRYMCILSGCDY + G+GL
Sbjct: 182 VILKMDKQGNGLEIEQCHLGRCKSLGNI------FTEEKFRYMCILSGCDYLQSLYGIGL 235
Query: 135 KKAKDYVFSIMDPDFENALRKINVYGKIGSYVKI 168
KA + +PD + V K+G Y+K+
Sbjct: 236 GKACKLLRMANNPDI------LKVIKKMGQYLKM 263
>sp|Q8L6Z7|EXO1_ARATH Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2
Length = 735
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 199 IAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYM 258
I D +ITEDSDL+ FG +II+K+D G+ KLP + L+ F+ M
Sbjct: 160 ITKQVDAIITEDSDLIPFGCLRIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEM 219
Query: 259 CILSGCDYWTGIKGMGLKKA 278
CILSGCDY + GMGLK+A
Sbjct: 220 CILSGCDYLQSLPGMGLKRA 239
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 80 IIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
II+K+D G+ KLP + L+ F+ MCILSGCDY + GMGLK+A
Sbjct: 182 IIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRA 239
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSGSS 79
++ YCM +N+L H +K IMVFDG LP K +E++R R+ + +A E +G+S
Sbjct: 55 HIQYCMHRVNLLRHHGVKPIMVFDGGPLPMK-LEQENKRARSRKENLARALEHEANGNS 112
>sp|Q54ED2|EXO1_DICDI Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1
Length = 1046
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 192 SAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALK--MPLAK 249
+ +T +I G D +ITEDSDL+ FGA II+K+D G + E L S K
Sbjct: 153 AQLTYLSITGQVDAIITEDSDLVAFGATHIIFKMDKYGYAQEIKTEDLGSCKKDGYDFID 212
Query: 250 FTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
F R MCILSGCDY + GMGLK +
Sbjct: 213 FNQTMLRQMCILSGCDYLPSLSGMGLKTS 241
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDR-RKRAEIRHKQKA--AELLHSG 77
Y+NY + I ML+++K+ +++FDG LP K+ E++R R R E ++K KA E S
Sbjct: 55 YINYFISRIKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLLEGNKSQ 114
Query: 78 SSIIYK--LDLSGNCCFMDREKLPSALKMP--LAKF-TDAKFRYMCILSGCD 124
++I ++ +D++ F+ ++L ALK+ +A + DA+ Y+ I D
Sbjct: 115 ANICFQKAVDITPRMAFLLIKEL-RALKVEYLVAPYEADAQLTYLSITGQVD 165
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 77 GSSIIYKLDLSGNCCFMDREKLPSALK--MPLAKFTDAKFRYMCILSGCDYWTGIKGMGL 134
+ II+K+D G + E L S K F R MCILSGCDY + GMGL
Sbjct: 179 ATHIIFKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGL 238
Query: 135 KKA 137
K +
Sbjct: 239 KTS 241
>sp|Q60GC1|EXO1_ORYSJ Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1
Length = 836
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 204 DYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSG 263
D VITEDSDL+ FG +II+K+D G +L ++ L FT MCILSG
Sbjct: 165 DAVITEDSDLIPFGCSRIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSG 224
Query: 264 CDYWTGIKGMGLKKA 278
CDY + GMG+K+A
Sbjct: 225 CDYLPSLPGMGVKRA 239
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 14 KKLLQHLYVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAEL 73
K L ++ YCM +NML H +K I+VFDG HLP K +E +R+R+ + ++A E
Sbjct: 48 KGLPTTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMK-GDQETKRERSRKENLERAKEH 106
Query: 74 LHSGSS 79
+G+S
Sbjct: 107 ESAGNS 112
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 78 SSIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
S II+K+D G +L ++ L FT MCILSGCDY + GMG+K+A
Sbjct: 180 SRIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRA 239
>sp|P39875|EXO1_YEAST Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=EXO1 PE=1 SV=2
Length = 702
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 186 EGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDRE---KLPSA 242
E S + + ++NI +I+EDSDLLVFG +++I KL+ G C + R+ KLP
Sbjct: 150 EADSQMVYLEQKNIV---QGIISEDSDLLVFGCRRLITKLNDYGECLEICRDNFIKLPK- 205
Query: 243 LKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGL 275
K PL T+ + M LSGCDY GI +GL
Sbjct: 206 -KFPLGSLTNEEIITMVCLSGCDYTNGIPKVGL 237
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 80 IIYKLDLSGNCCFMDRE---KLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGL 134
+I KL+ G C + R+ KLP K PL T+ + M LSGCDY GI +GL
Sbjct: 182 LITKLNDYGECLEICRDNFIKLPK--KFPLGSLTNEEIITMVCLSGCDYTNGIPKVGL 237
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRR-KRAE 63
Y+ + +K ++L K++ +VFDG +P K++TE RR KR E
Sbjct: 55 YLQFFIKRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKE 98
>sp|Q12086|DIN7_YEAST DNA damage-inducible protein DIN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIN7 PE=2 SV=1
Length = 430
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 201 GYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSAL--KMPLAKFTDAKFRYM 258
G +I+EDSDLLVFG K +I KL+ G + ++ SAL PL + ++ +FR +
Sbjct: 162 GLIQGIISEDSDLLVFGCKTLITKLNDQGKALEISKDDF-SALPENFPLGELSEQQFRNL 220
Query: 259 CILSGCDYWTGIKGMGLKKA 278
L+GCDY +GI +G+ A
Sbjct: 221 VCLAGCDYTSGIWKVGVVTA 240
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 73 LLHSGSSIIYKLDLSGNCCFMDREKLPSAL--KMPLAKFTDAKFRYMCILSGCDYWTGIK 130
L+ ++I KL+ G + ++ SAL PL + ++ +FR + L+GCDY +GI
Sbjct: 175 LVFGCKTLITKLNDQGKALEISKDDF-SALPENFPLGELSEQQFRNLVCLAGCDYTSGIW 233
Query: 131 GMGLKKA 137
+G+ A
Sbjct: 234 KVGVVTA 240
>sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1
Length = 382
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 23/86 (26%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----- 254
AG V++ED D L FGA K + L MD PS+ K+P+ +F AK
Sbjct: 170 AGKVYGVVSEDMDSLTFGAPKFLRHL--------MD----PSSKKIPVMEFEVAKILEEL 217
Query: 255 ------FRYMCILSGCDYWTGIKGMG 274
F +CILSGCDY I+G+G
Sbjct: 218 NMTMDQFIDLCILSGCDYCDSIRGIG 243
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 11/46 (23%)
Query: 99 PSALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMG 133
PS+ K+P+ +F AK F +CILSGCDY I+G+G
Sbjct: 198 PSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIG 243
>sp|B4MR84|FEN1_DROWI Flap endonuclease 1 OS=Drosophila willistoni GN=Fen1 PE=3 SV=1
Length = 388
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +FT
Sbjct: 169 AGKVYATATEDMDALTFGSSKLLRYLTYS------------EARKMPVKEFTYEKLLQGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+F +CIL GCDY IKG+G K+A + + S D
Sbjct: 217 ELNQREFIDLCILLGCDYCESIKGIGPKRAIELINSYRD 255
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +FT +F +CIL GCDY IKG+G K+A + + S D
Sbjct: 198 EARKMPVKEFTYEKLLQGLELNQREFIDLCILLGCDYCESIKGIGPKRAIELINSYRD 255
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2
SV=1
Length = 382
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----- 254
AG TED D L FG+ ++ L S A KMP+ +F+ AK
Sbjct: 169 AGKVYATATEDMDALTFGSGILLRHLTFS------------EARKMPVKEFSYAKVLDGF 216
Query: 255 ------FRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
F +CIL GCDY GI+G+G K+A + + S D
Sbjct: 217 GLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKD 255
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 100 SALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPD 148
A KMP+ +F+ AK F +CIL GCDY GI+G+G K+A + + S D
Sbjct: 198 EARKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYK--D 255
Query: 149 FENALRKIN 157
E L KI+
Sbjct: 256 IETILEKID 264
>sp|Q18HK0|FEN_HALWD Flap endonuclease 1 OS=Haloquadratum walsbyi (strain DSM 16790)
GN=fen PE=3 SV=1
Length = 326
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 196 ERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKF 255
E I G DYV +ED D L+FGA + +L G+ MD L + LK T +
Sbjct: 161 EMAIRGDVDYVGSEDYDTLLFGAPYTVRQLTSKGDPELMD---LQTTLKN--QNLTREQL 215
Query: 256 RYMCILSGCDYWTGIKGMGLKKA----KDY--VFSIMDPDFENRKEYVKYAK 301
+ IL G D+ GI G+G A D+ ++S++D R E++++A
Sbjct: 216 VDVAILCGTDFNDGISGIGPATAISAINDHGDLWSVLDA----RDEFIQHAD 263
>sp|A5KAL1|FEN1_PLAVS Flap endonuclease 1 OS=Plasmodium vivax (strain Salvador I) GN=FEN1
PE=3 SV=1
Length = 623
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 203 ADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPS----------------ALKMP 246
A TED+D LVFG K +I L+ + + ++ K S L +
Sbjct: 174 AHATATEDADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLS 233
Query: 247 LAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
+ +F D CIL GCDY IKG+G K A
Sbjct: 234 MNEFID-----FCILCGCDYCDTIKGIGSKTA 260
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 96 EKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
E++ L + + +F D CIL GCDY IKG+G K A
Sbjct: 224 EQVLKGLNLSMNEFID-----FCILCGCDYCDTIKGIGSKTA 260
>sp|Q97B98|FEN_THEVO Flap endonuclease 1 OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=fen PE=3
SV=1
Length = 335
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 166 VKITKEFLTSGAPQPFGARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKL 225
V TKE LT A +EG + S +T ++ AD VI++D D L+FGAKKI+
Sbjct: 131 VNDTKELLTYMGIPYVDAPSEGEAQASYMTRKD----ADGVISQDYDCLLFGAKKILRNF 186
Query: 226 DLSGNCCFMDREKLPSA------------LKMPLAK--FTDAKFRYMCILSGCDYWTGIK 271
+ G R K+P L L K + + IL G D+ GIK
Sbjct: 187 AIYG------RRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIK 240
Query: 272 GMGLKKA 278
G+G KKA
Sbjct: 241 GIGAKKA 247
>sp|B8AW67|FEN11_ORYSI Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3
SV=1
Length = 380
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 23/84 (27%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----------- 254
V +ED D L FGA + + L MD PS+ K+P+ +F AK
Sbjct: 176 VASEDMDSLTFGAPRFLRHL--------MD----PSSKKIPVMEFEVAKVLEELELTMDQ 223
Query: 255 FRYMCILSGCDYWTGIKGMGLKKA 278
F +CILSGCDY IKG+G + A
Sbjct: 224 FIDLCILSGCDYCDSIKGIGGQTA 247
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 11/50 (22%)
Query: 99 PSALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMGLKKA 137
PS+ K+P+ +F AK F +CILSGCDY IKG+G + A
Sbjct: 198 PSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTA 247
>sp|Q9SXQ6|FEN11_ORYSJ Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a
PE=2 SV=1
Length = 380
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 23/84 (27%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----------- 254
V +ED D L FGA + + L MD PS+ K+P+ +F AK
Sbjct: 176 VASEDMDSLTFGAPRFLRHL--------MD----PSSKKIPVMEFEVAKVLEELELTMDQ 223
Query: 255 FRYMCILSGCDYWTGIKGMGLKKA 278
F +CILSGCDY IKG+G + A
Sbjct: 224 FIDLCILSGCDYCDSIKGIGGQTA 247
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 11/50 (22%)
Query: 99 PSALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMGLKKA 137
PS+ K+P+ +F AK F +CILSGCDY IKG+G + A
Sbjct: 198 PSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTA 247
>sp|O65251|FEN1_ARATH Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2
Length = 383
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 23/84 (27%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----------- 254
V +ED D L FGA K + L MD PS+ K+P+ +F AK
Sbjct: 176 VASEDMDSLTFGAPKFLRHL--------MD----PSSRKIPVMEFEVAKILEELQLTMDQ 223
Query: 255 FRYMCILSGCDYWTGIKGMGLKKA 278
F +CILSGCDY I+G+G + A
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTA 247
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 11/50 (22%)
Query: 99 PSALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMGLKKA 137
PS+ K+P+ +F AK F +CILSGCDY I+G+G + A
Sbjct: 198 PSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
>sp|B3L014|FEN1_PLAKH Flap endonuclease 1 OS=Plasmodium knowlesi (strain H) GN=FEN1 PE=3
SV=1
Length = 595
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 203 ADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPS----------------ALKMP 246
A TED+D LVFG K +I L+ + + ++ K S L +
Sbjct: 174 AHATATEDADALVFGTKILIRNLNANASSTSQNKNKNSSKRGYILTEINLEQVLKGLNLN 233
Query: 247 LAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
+ +F D CIL GCDY IKG+G K A
Sbjct: 234 MNEFID-----FCILCGCDYCDTIKGIGSKTA 260
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 96 EKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
E++ L + + +F D CIL GCDY IKG+G K A
Sbjct: 224 EQVLKGLNLNMNEFID-----FCILCGCDYCDTIKGIGSKTA 260
>sp|B7XHS8|FEN1_ENTBH Flap endonuclease 1 OS=Enterocytozoon bieneusi (strain H348)
GN=FEN1 PE=3 SV=1
Length = 358
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDRE----KLPSALKMPLAKFTDAKF 255
+ + D V TED D L FG+ ++ + + + E K+ L+ + +F D
Sbjct: 168 SKFVDAVATEDMDSLCFGSPLLLRNFNTALSQKLPVEEYNLHKILEGLQFTMEQFVD--- 224
Query: 256 RYMCILSGCDYWTGIKGMGLKKAKDYV 282
+CIL GCDY I+G+G+K+A +Y+
Sbjct: 225 --LCILLGCDYSATIRGVGMKRAFEYI 249
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 108 KFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 141
+FT +F +CIL GCDY I+G+G+K+A +Y+
Sbjct: 216 QFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYI 249
>sp|B4LM90|FEN1_DROVI Flap endonuclease 1 OS=Drosophila virilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ K++ L S A KMP+ +F
Sbjct: 169 AGKVYATATEDMDALTFGSCKLLRYLTYS------------EARKMPVKEFSYDKVLQGL 216
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
T +F +CIL GCDY IKG+G K+A + + S D
Sbjct: 217 ELTSKEFIDLCILMGCDYCESIKGVGPKRAIELIKSYRD 255
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+C + A KMP+ +F T +F +CIL GCDY IKG+G K+
Sbjct: 186 GSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIKGVGPKR 245
Query: 137 AKDYVFSIMDPDFENALRKINV 158
A + + S D E L I+
Sbjct: 246 AIELIKSYR--DIETILENIDT 265
>sp|C5WU23|FEN12_SORBI Flap endonuclease 1-B OS=Sorghum bicolor GN=FEN1-B PE=3 SV=2
Length = 428
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 183 ARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKL-DLS---GNCCFMDREK 238
A E + +A+ E N YA V +ED D L FGA++ + L DL D K
Sbjct: 183 APGEAEAQCAALCE-NHQVYA--VASEDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSK 239
Query: 239 LPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
+ L + + +F D +CILSGCDY IKG+G ++A
Sbjct: 240 VLEELGLTMDQFID-----LCILSGCDYCENIKGIGGQRA 274
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 94 DREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
D K+ L + + +F D +CILSGCDY IKG+G ++A
Sbjct: 236 DVSKVLEELGLTMDQFID-----LCILSGCDYCENIKGIGGQRA 274
>sp|A8J2Z9|FEN1_CHLRE Flap endonuclease 1 OS=Chlamydomonas reinhardtii GN=FEN1 PE=3 SV=1
Length = 396
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF-----------TDAK 254
+ TED D L FGA ++I L PS+ +P+ +F TD +
Sbjct: 176 LATEDMDALTFGAPRVIRHL------------MAPSSQNVPVQEFDREVALRELELTDDQ 223
Query: 255 FRYMCILSGCDYWTGIKGMGLKKA 278
F +CIL GCDY I+G+G +A
Sbjct: 224 FIDLCILMGCDYCGTIRGIGAVRA 247
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 31/96 (32%)
Query: 99 PSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDP 147
PS+ +P+ +F TD +F +CIL GCDY I+G+G
Sbjct: 198 PSSQNVPVQEFDREVALRELELTDDQFIDLCILMGCDYCGTIRGIG-------------- 243
Query: 148 DFENALRKINVYGKIGSYVKITKEFLTSG--APQPF 181
A+R + + K GS + KE + P+PF
Sbjct: 244 ----AVRALQMIKKHGSIEGMLKELDPAKYPVPEPF 275
>sp|B3MDA3|FEN1_DROAN Flap endonuclease 1 OS=Drosophila ananassae GN=Fen1 PE=3 SV=1
Length = 388
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYEKLLDGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 GVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ + +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
>sp|B4QIG6|FEN1_DROSI Flap endonuclease 1 OS=Drosophila simulans GN=Fen1 PE=3 SV=1
Length = 385
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYDKLLEGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 AINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRD 255
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ + +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRD 255
>sp|B5DUR8|FEN1_DROPS Flap endonuclease 1 OS=Drosophila pseudoobscura pseudoobscura
GN=Fen1 PE=3 SV=1
Length = 386
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYDKLLEGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 EVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ + +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
>sp|B4GIM3|FEN1_DROPE Flap endonuclease 1 OS=Drosophila persimilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYDKLLEGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 EVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ + +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
>sp|B4HTA1|FEN1_DROSE Flap endonuclease 1 OS=Drosophila sechellia GN=Fen1 PE=3 SV=1
Length = 385
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYDKLLEGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 AINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRD 255
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ + +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRD 255
>sp|Q7K7A9|FEN1_DROME Flap endonuclease 1 OS=Drosophila melanogaster GN=Fen1 PE=2 SV=1
Length = 385
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYDKLLEGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 AINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRD 255
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ + +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRD 255
>sp|B4J6M4|FEN1_DROGR Flap endonuclease 1 OS=Drosophila grimshawi GN=Fen1 PE=3 SV=1
Length = 388
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ K++ L S A KMP+ +F
Sbjct: 169 AGKVYATATEDMDALTFGSCKLLRYLTYS------------EARKMPVKEFSYDKVLQGL 216
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
T +F +CIL GCDY I+G+G K+A + + S D
Sbjct: 217 ELTSKEFIDLCILMGCDYCESIRGVGPKRAIELIKSYRD 255
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+C + A KMP+ +F T +F +CIL GCDY I+G+G K+
Sbjct: 186 GSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIRGVGPKR 245
Query: 137 AKDYVFSIMDPDFENALRKINV 158
A + + S D E L I+
Sbjct: 246 AIELIKSYR--DIETILENIDT 265
>sp|B4KNM1|FEN1_DROMO Flap endonuclease 1 OS=Drosophila mojavensis GN=Fen1 PE=3 SV=1
Length = 388
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ K++ L S A KMP+ +F
Sbjct: 169 AGKVYATATEDMDALTFGSCKLLRYLTYS------------EARKMPVKEFSYDKVLQGL 216
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
T +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 ELTSKEFIDLCILMGCDYCDSIKGIGPKRAIELIKTYRD 255
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+C + A KMP+ +F T +F +CIL GCDY IKG+G K+
Sbjct: 186 GSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCDSIKGIGPKR 245
Query: 137 AKDYVFSIMDPDFENALRKINV 158
A + + + D E L I+
Sbjct: 246 AIELIKTYR--DIETILENIDT 265
>sp|Q2FNC9|FEN_METHJ Flap endonuclease 1 OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=fen PE=3 SV=1
Length = 333
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 199 IAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLA------KFTD 252
+ G ADYV+++D D L+FG ++ L +SG R+ ++ L+ T
Sbjct: 163 LKGDADYVVSQDYDTLLFGTPVLVRNLTISGKRRLHGRQITVQPERIVLSDVLSTLDITR 222
Query: 253 AKFRYMCILSGCDYWTGIKGM----GLKKAKDYVF-SIMD---PDFE 291
+ + IL+G D+ GI+G+ GLKK K F SI+ PDF+
Sbjct: 223 EQLIEIAILTGTDFNPGIRGIGAKTGLKKIKSGEFDSIIREKLPDFD 269
>sp|B4P5U9|FEN1_DROYA Flap endonuclease 1 OS=Drosophila yakuba GN=Fen1 PE=3 SV=1
Length = 387
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----- 254
AG TED D L FG+ K++ L S A KMP+ +F+ K
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYEKLLEGL 216
Query: 255 ------FRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 SINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 96 EKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
EKL L + +F D +CIL GCDY IKG+G K+A + + + D
Sbjct: 210 EKLLEGLSINSREFID-----LCILLGCDYCESIKGIGPKRAIELINNYRD 255
>sp|B3NP61|FEN1_DROER Flap endonuclease 1 OS=Drosophila erecta GN=Fen1 PE=3 SV=1
Length = 387
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFT-------- 251
AG TED D L FG+ K++ L S A KMP+ +F+
Sbjct: 169 AGKVYATATEDMDALTFGSTKLLRYLTYS------------EARKMPVKEFSYDKLLEGL 216
Query: 252 ---DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 287
+F +CIL GCDY IKG+G K+A + + + D
Sbjct: 217 SINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 100 SALKMPLAKFT-----------DAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
A KMP+ +F+ +F +CIL GCDY IKG+G K+A + + + D
Sbjct: 198 EARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRD 255
>sp|Q5UQW7|YL386_MIMIV Putative endonuclease L386 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L386 PE=3 SV=1
Length = 473
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 189 SLLSAVTERNIAGYADYVITEDSDLLVFGA----KKIIYKLDLSGNCCFMDREKLPSALK 244
S L A + N Y V TEDSD+L GA K ++ +L+ N + + + L
Sbjct: 163 SWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLKDVLGFLG 222
Query: 245 MPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
+ + +F D +C+L GCDY IKG+G K A
Sbjct: 223 LTMNEFID-----LCVLLGCDYCDNIKGIGPKNA 251
>sp|A9VB27|FEN1_MONBE Flap endonuclease 1 OS=Monosiga brevicollis GN=FEN1 PE=3 SV=1
Length = 368
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Query: 208 TEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLP--------SALKMPLAKFTDAKFRYMC 259
TED D L FG ++ + F + K+P L+M + +F D MC
Sbjct: 177 TEDMDALTFGTTVLLRHM------TFSEARKMPIQEFRLQKGGLEMSMEEFID-----MC 225
Query: 260 ILSGCDYWTGIKGMGLKKA 278
IL GCDY IKG+G +KA
Sbjct: 226 ILLGCDYCDSIKGIGRQKA 244
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 100 SALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
L+M + +F D MCIL GCDY IKG+G +KA
Sbjct: 212 GGLEMSMEEFID-----MCILLGCDYCDSIKGIGRQKA 244
>sp|Q75LI2|FEN12_ORYSJ Flap endonuclease 1-B OS=Oryza sativa subsp. japonica GN=FEN-1b
PE=2 SV=1
Length = 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 206 VITEDSDLLVFGAKKIIYKL-DLS---GNCCFMDREKLPSALKMPLAKFTDAKFRYMCIL 261
+ +ED D L FGA++ + L DLS + K+ L + + +F D +CIL
Sbjct: 176 IASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFID-----LCIL 230
Query: 262 SGCDYWTGIKGMGLKKA 278
SGCDY I+G+G ++A
Sbjct: 231 SGCDYCENIRGIGGQRA 247
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 109 FTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
T +F +CILSGCDY I+G+G ++A
Sbjct: 219 LTMDQFIDLCILSGCDYCENIRGIGGQRA 247
>sp|B8AMS4|FEN12_ORYSI Flap endonuclease 1-B OS=Oryza sativa subsp. indica GN=FEN1b PE=3
SV=1
Length = 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 206 VITEDSDLLVFGAKKIIYKL-DLS---GNCCFMDREKLPSALKMPLAKFTDAKFRYMCIL 261
+ +ED D L FGA++ + L DLS + K+ L + + +F D +CIL
Sbjct: 176 IASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFID-----LCIL 230
Query: 262 SGCDYWTGIKGMGLKKA 278
SGCDY I+G+G ++A
Sbjct: 231 SGCDYCENIRGIGGQRA 247
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 109 FTDAKFRYMCILSGCDYWTGIKGMGLKKA 137
T +F +CILSGCDY I+G+G ++A
Sbjct: 219 LTMDQFIDLCILSGCDYCENIRGIGGQRA 247
>sp|Q09708|YAGG_SCHPO Uncharacterized protein C12G12.16c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC12G12.16c PE=3 SV=1
Length = 496
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 180 PFGARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGN----CCFMD 235
P G E + SA+++ N+A YA V T+D+D+L+ G+ I LDL+ N MD
Sbjct: 296 PIGV--EAEAFASAISQNNLA-YA--VATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMD 350
Query: 236 REKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
K+ L + F D C++ G D+ + I +G +A
Sbjct: 351 PRKIAQELNLTFDGFQD-----YCLMCGTDFTSRIPKIGPVRA 388
>sp|Q7Q323|FEN1_ANOGA Flap endonuclease 1 OS=Anopheles gambiae GN=Fen1 PE=3 SV=2
Length = 383
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 23/90 (25%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ ++ L S A KMP+ +F
Sbjct: 169 AGKVYATATEDMDALTFGSNILLRHLTFS------------EARKMPVQEFAYEKVLKGF 216
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKA 278
T +F +CIL GCDY I+G+G KKA
Sbjct: 217 ELTQDEFIDLCILLGCDYCDTIRGIGPKKA 246
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Query: 100 SALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKKA 137
A KMP+ +F T +F +CIL GCDY I+G+G KKA
Sbjct: 198 EARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDTIRGIGPKKA 246
>sp|C5YUK3|FEN11_SORBI Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1
Length = 380
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 23/84 (27%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----------- 254
V +ED D L FGA + + L MD PS+ K+P+ +F AK
Sbjct: 176 VASEDMDSLTFGAPRFLRHL--------MD----PSSKKIPVMEFDVAKVLEELELTMDQ 223
Query: 255 FRYMCILSGCDYWTGIKGMGLKKA 278
F +CIL GCDY IKG+G + A
Sbjct: 224 FIDLCILCGCDYCDSIKGIGGQTA 247
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 99 PSALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMGLKKA 137
PS+ K+P+ +F AK F +CIL GCDY IKG+G + A
Sbjct: 198 PSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTA 247
>sp|B4FHY0|FEN1_MAIZE Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1
Length = 379
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 23/84 (27%)
Query: 206 VITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAK----------- 254
V +ED D L FGA + + L MD PS+ K+P+ +F AK
Sbjct: 176 VASEDMDSLTFGAPRFLRHL--------MD----PSSKKIPVMEFDVAKVLEELELTMDQ 223
Query: 255 FRYMCILSGCDYWTGIKGMGLKKA 278
F +CIL GCDY IKG+G + A
Sbjct: 224 FIDLCILCGCDYCDSIKGIGGQTA 247
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 99 PSALKMPLAKFTDAK-----------FRYMCILSGCDYWTGIKGMGLKKA 137
PS+ K+P+ +F AK F +CIL GCDY IKG+G + A
Sbjct: 198 PSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTA 247
>sp|Q9HJD4|FEN_THEAC Flap endonuclease 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=fen
PE=3 SV=1
Length = 336
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 24/110 (21%)
Query: 183 ARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSA 242
A +EG + S +T++N+ G VI++D D L+FGA+KI+ + G R K+P
Sbjct: 148 APSEGEAQASYMTKKNVDG----VISQDYDCLLFGARKILRNFAIYG------RRKVPRK 197
Query: 243 ------------LKMPLA--KFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
L L+ + + + IL G D+ GIKG+G KKA
Sbjct: 198 NIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKA 247
>sp|Q3IPG8|FEN_NATPD Flap endonuclease 1 OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=fen PE=3 SV=1
Length = 328
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 164 SYVKITKEFLTSGAPQPFGARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIY 223
+ V+ T+E L A EG + + + R G ADYV +ED D L+ GA +
Sbjct: 134 TIVETTRELLARLDVPVVEAPAEGEAQAAHMARR---GDADYVGSEDYDALLLGAPYTLR 190
Query: 224 KLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 278
L +G+ MD E S + DA IL G D+ G+ G+G K A
Sbjct: 191 GLTSNGDPECMDFEATLSTHDLSWEGLVDA-----AILMGTDFNEGLSGVGPKTA 240
>sp|A8XL25|FEN1_CAEBR Flap endonuclease 1 OS=Caenorhabditis briggsae GN=crn-1 PE=3 SV=1
Length = 382
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 200 AGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF--------- 250
AG TED D L FG+ C + P A K+P+ +F
Sbjct: 169 AGKVYGTATEDMDALTFGS------------CVLLRHLLAPEAKKIPIKEFHLARVLEEM 216
Query: 251 --TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 282
T +F +CIL GCDY I+G+G KKA + +
Sbjct: 217 QLTKDQFIDLCILLGCDYCGTIRGIGPKKAVELI 250
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 88 GNCCFMDREKLPSALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKK 136
G+C + P A K+P+ +F T +F +CIL GCDY I+G+G KK
Sbjct: 186 GSCVLLRHLLAPEAKKIPIKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIRGIGPKK 245
Query: 137 AKDYV 141
A + +
Sbjct: 246 AVELI 250
>sp|Q178M1|FEN1_AEDAE Flap endonuclease 1 OS=Aedes aegypti GN=Fen1 PE=3 SV=1
Length = 380
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 23/86 (26%)
Query: 208 TEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKF-----------TDAKFR 256
TED D L FG+ ++ L S A KMP+ +F T +F
Sbjct: 177 TEDMDALTFGSNILLRHLTFS------------EARKMPVQEFNYDKILQGLELTRDEFI 224
Query: 257 YMCILSGCDYWTGIKGMGLKKAKDYV 282
+CIL GCDY I+G+G KKA + +
Sbjct: 225 DLCILLGCDYCDSIRGIGPKKAVELI 250
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 11/53 (20%)
Query: 100 SALKMPLAKF-----------TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV 141
A KMP+ +F T +F +CIL GCDY I+G+G KKA + +
Sbjct: 198 EARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDSIRGIGPKKAVELI 250
>sp|O29975|FEN_ARCFU Flap endonuclease 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=fen PE=1
SV=1
Length = 336
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 160 GKIGSYVKITKEFLTSGAPQPF-GARNEGRSLLSAVTERNIAGYADYVITEDSDLLVFGA 218
G++ Y+ + + L S PF A +EG + + + + G +Y ++D D L+FG+
Sbjct: 124 GRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAK---GDVEYTGSQDYDSLLFGS 180
Query: 219 KK------IIYKLDLSGNCCFMDREKLPSALKMPLAKF--TDAKFRYMCILSGCDYWTGI 270
+ I K L G ++D + L+ L + T + + IL G DY G+
Sbjct: 181 PRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGV 240
Query: 271 KGMGLKKAKDYVFSIMD 287
KG+G+KKA +Y+ + D
Sbjct: 241 KGVGVKKALNYIKTYGD 257
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 117 MCILSGCDYWTGIKGMGLKKAKDYVFSIMD 146
+ IL G DY G+KG+G+KKA +Y+ + D
Sbjct: 228 IAILVGTDYNEGVKGVGVKKALNYIKTYGD 257
>sp|Q4UFP0|FEN1_THEAN Flap endonuclease 1 OS=Theileria annulata GN=FEN1 PE=3 SV=1
Length = 506
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 19/127 (14%)
Query: 162 IGSYVKITKEFLTS--------GAPQPFGARNEGRSLLSAVTERNIAGYADYVITEDSDL 213
+G VK+TK+ S G P A E + + + +N+ + V +ED+D
Sbjct: 129 VGRTVKVTKDMNDSAKKLLRLMGIP-VIEALEEAEAQCAYLVTKNLCHF---VASEDTDT 184
Query: 214 LVFGAKKIIYKLDLSGN--CCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIK 271
LVFG ++ + S N +D +K+ L+ +F D CIL GCDY ++
Sbjct: 185 LVFGGWFLLRNVTSSANKKIVKVDLQKVLDGLEFNFDQFVD-----FCILCGCDYCDTLE 239
Query: 272 GMGLKKA 278
G+G K A
Sbjct: 240 GVGPKTA 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,206,144
Number of Sequences: 539616
Number of extensions: 6875550
Number of successful extensions: 20231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 19896
Number of HSP's gapped (non-prelim): 389
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)