RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11828
(443 letters)
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 207
Score = 47.8 bits (113), Expect = 6e-07
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 198 NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCC-FMDREKLPSALK 244
G V+++D D L++GA +++ L + ++ ++ L+
Sbjct: 160 AKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEVLEDLR 207
Score = 37.8 bits (87), Expect = 0.001
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 14/155 (9%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSGSSI 80
N LL + I I VFDG KE T + RR+ E + +
Sbjct: 56 AYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEE 115
Query: 81 IYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDY 140
K L + + + + M K
Sbjct: 116 AAK-------YAKRVSYLTPKMVENCKYLLS-LMGIPYVEAPSEGEAQASYMAKKGDVWA 167
Query: 141 VFSIMDPDF-----ENALRKINVYGKIGSYVKITK 170
V S D D +R + ++ +++ +
Sbjct: 168 VVS-QDYDALLYGAPRVVRNLTTTKEMPELIELNE 201
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 47.5 bits (112), Expect = 9e-07
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 198 NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREK 238
G ++D D L+FGA +++ L ++G +
Sbjct: 160 AAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNV 200
Score = 33.6 bits (76), Expect = 0.028
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 8/123 (6%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSGSSI 80
+++ L+ IK + VFDG + E ++R+ A ++K E L G
Sbjct: 56 HLSGLFYRTINLMEAGIKPVYVFDGEPPE-FKKKELEKRREAREEAEEKWREALEKGEIE 114
Query: 81 IYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDY 140
+ + + + AK + + + M K +
Sbjct: 115 EARKYAQRATRV-------NEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYA 167
Query: 141 VFS 143
S
Sbjct: 168 SAS 170
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 217
Score = 46.3 bits (109), Expect = 2e-06
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 198 NIAGYADYVITEDSDLLVFGAKKIIYKLDLSGN 230
G +Y ++D D L+FG+ ++ L ++G
Sbjct: 158 AAKGDVEYTGSQDYDSLLFGSPRLARNLAITGK 190
Score = 40.5 bits (94), Expect = 2e-04
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 21 YVNYCMKYINMLLAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAELLHSGSSI 80
+++ + ++ ++ I+ + VFDG K+A E+R+KR + A L
Sbjct: 55 HLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDA 114
Query: 81 IYKLDLSGNCCFMDREKLPSALKMPLAKFT------DAKFRYMCILSGCDY 125
+G + + L F +A+ YM +Y
Sbjct: 115 KKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEY 165
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 216
Score = 44.8 bits (105), Expect = 5e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 192 SAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCC 232
++ AG TED D L FG+ ++ L S
Sbjct: 160 ASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKK 200
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 113 KFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKIN 157
+F +CIL G DY I+G+G K+A D + E +R+++
Sbjct: 5 QFVDLCILLGSDYCESIRGIGPKRAVDLI--QKHKSIEEIVRRLD 47
Score = 38.4 bits (89), Expect = 3e-04
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 254 KFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPD 289
+F +CIL G DY I+G+G K+A D + +
Sbjct: 5 QFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIE 40
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 36.0 bits (83), Expect = 0.001
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 251 TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYV--FSIMDPDFENRKEYVKYAK 301
T + + IL G DY G+KG+G+KKA +Y+ + + + K + + +
Sbjct: 2 TREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNIDHVE 54
Score = 34.1 bits (78), Expect = 0.006
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 110 TDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKI 156
T + + IL G DY G+KG+G+KKA +Y+ D AL+ +
Sbjct: 2 TREQLIDIAILVGTDYNEGVKGVGVKKALNYI--KTYGDIFRALKAL 46
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 33.7 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 110 TDAKFRYMCILSGCDY-WTGIKGMGLKKA 137
T K + IL G DY GIKG+GLKKA
Sbjct: 2 TREKLIELAILVGTDYNPGGIKGIGLKKA 30
Score = 33.7 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 251 TDAKFRYMCILSGCDY-WTGIKGMGLKKA 278
T K + IL G DY GIKG+GLKKA
Sbjct: 2 TREKLIELAILVGTDYNPGGIKGIGLKKA 30
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 108
Score = 32.9 bits (75), Expect = 0.017
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 251 TDAKFRYMCILSGCDY-WTGIKGMGLKKAKDYV--FSIMDPDFENRKEYVKYAKVFPLTA 307
+ + I G DY G+KG+G K+A + V D + + Y + ++F
Sbjct: 2 SLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYYDEIKRIFKEPK 61
Query: 308 ILD 310
+ D
Sbjct: 62 VTD 64
Score = 29.4 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 110 TDAKFRYMCILSGCDY-WTGIKGMGLKKA 137
+ + I G DY G+KG+G K+A
Sbjct: 2 SLDDLIDIAIFMGTDYNPGGVKGIGFKRA 30
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 29.0 bits (65), Expect = 1.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 51 KEATEEDRRKRAEIRHK-QKAAELLHSGSSII--YKLDLSGNCCFMDREKLPSALKMPLA 107
+E E+ R EI + +K ++ G + Y+ D GN FMD +PS L +P
Sbjct: 252 EELKEKADSLREEIDNAIEKHGKVYKEGFGEVYAYETDGMGNYNFMDDANVPSLLSIPYL 311
Query: 108 KFTDAK 113
++ +
Sbjct: 312 EYKGIE 317
Score = 27.0 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 223 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAK 254
Y+ D GN FMD +PS L +P ++ +
Sbjct: 286 YETDGMGNYNFMDDANVPSLLSIPYLEYKGIE 317
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 28.4 bits (62), Expect = 1.9
Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 2/117 (1%)
Query: 15 KLLQHLYVNYCMKYINML--LAHKIKVIMVFDGRHLPAKEATEEDRRKRAEIRHKQKAAE 72
+ Q + + IN + +A + + P D + R +
Sbjct: 149 HIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDC 208
Query: 73 LLHSGSSIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGI 129
+ I + + + +K L ++ G DY+T
Sbjct: 209 KVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHT 265
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 26.9 bits (59), Expect = 2.1
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 71 AELLHSGSSIIYKLDLSGNCCFMDREKLPSALKMPLA-----KFTDAKFRYMCILSG 122
+ + + + S N ++ L + L K + + +SG
Sbjct: 58 LRIESDSGNWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVSG 114
>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 495
Score = 27.4 bits (60), Expect = 4.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 186 EGRSLLSAVTERNIAGYADYVITEDSDLLVFGAKKIIYKLDLS 228
E ++++ N + Y +++ E+ L GAK I+ +L
Sbjct: 16 ESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLV 58
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 27.0 bits (60), Expect = 4.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 82 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAK 113
+++D GN MD +PS + +P
Sbjct: 295 FEVDGFGNQLLMDDANVPSLIALPYLGDVKVT 326
Score = 27.0 bits (60), Expect = 4.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 223 YKLDLSGNCCFMDREKLPSALKMPLAKFTDAK 254
+++D GN MD +PS + +P
Sbjct: 295 FEVDGFGNQLLMDDANVPSLIALPYLGDVKVT 326
>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 478
Score = 26.2 bits (57), Expect = 9.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 196 ERNIAGYADYVITEDSDLLVFGAKKIIYKLDLS 228
E +I Y+ +++ED D L GA++ ++ ++
Sbjct: 21 EPDIYNYSALLLSEDKDTLYIGAREAVFAVNAL 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.140 0.435
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,811,426
Number of extensions: 90885
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 30
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)