Query psy1183
Match_columns 106
No_of_seqs 103 out of 423
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:03:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 3.5E-52 7.6E-57 300.3 5.4 98 6-103 8-105 (119)
2 KOG1590|consensus 100.0 2.5E-49 5.5E-54 288.0 3.3 103 2-104 12-114 (132)
3 KOG1589|consensus 100.0 1.3E-47 2.9E-52 275.0 4.2 97 7-103 13-109 (118)
4 PF03083 MtN3_slv: Sugar efflu 96.7 0.00095 2.1E-08 43.8 2.0 59 37-97 28-86 (87)
5 KOG1623|consensus 91.4 0.19 4.1E-06 40.4 2.9 73 22-96 133-210 (243)
6 PF14795 Leucyl-specific: Leuc 40.6 11 0.00024 24.4 0.4 8 15-22 49-56 (56)
7 cd00928 Cyt_c_Oxidase_VIIa Cyt 36.7 23 0.00051 22.7 1.4 25 39-63 26-50 (55)
8 PLN02434 fatty acid hydroxylas 35.4 11 0.00024 30.2 -0.3 71 4-77 40-120 (237)
9 KOG1623|consensus 30.1 50 0.0011 26.7 2.6 58 37-95 34-91 (243)
10 PF09323 DUF1980: Domain of un 24.6 1.1E+02 0.0024 22.6 3.5 47 48-94 4-57 (182)
11 COG4095 Uncharacterized conser 23.7 1.6E+02 0.0034 20.7 3.9 58 37-96 30-87 (89)
12 PF15048 OSTbeta: Organic solu 23.2 66 0.0014 23.8 2.0 42 59-100 23-67 (125)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=3.5e-52 Score=300.33 Aligned_cols=98 Identities=42% Similarity=0.761 Sum_probs=94.2
Q ss_pred cccccccceeeeeecccccccccccccccccCCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhhhhHH
Q psy1183 6 SSILSIFSFSSTHFWGPVANWGIPLAAIADLKKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIV 85 (106)
Q Consensus 6 ~s~~~~~~~~TvhFWaP~~kWgl~iA~l~D~~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~~q~~ 85 (106)
+.+++.+||+|||||||++|||||||||+|++||||+||++||+|||+||+||||||++|+||||+||+||++|+++|++
T Consensus 8 ~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~ 87 (119)
T PF03650_consen 8 RFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLY 87 (119)
T ss_pred HHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhcccchhhhh
Q psy1183 86 QGSRFIKYNYIDSKKEQQ 103 (106)
Q Consensus 86 Ql~R~~~y~~~~~~~~~~ 103 (106)
|++|+++|++.+++++++
T Consensus 88 Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 88 QLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred HHHHHHHHHhhcCchhHH
Confidence 999999999988877654
No 2
>KOG1590|consensus
Probab=100.00 E-value=2.5e-49 Score=288.00 Aligned_cols=103 Identities=60% Similarity=1.044 Sum_probs=98.6
Q ss_pred hhhhcccccccceeeeeecccccccccccccccccCCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhh
Q psy1183 2 LQRISSILSIFSFSSTHFWGPVANWGIPLAAIADLKKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNEC 81 (106)
Q Consensus 2 ~~~~~s~~~~~~~~TvhFWaP~~kWgl~iA~l~D~~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~ 81 (106)
.+.++|++.++|++|||||||++|||||||+|.||+|+||.|||+||+|||+||.+||||+|.|+||||+||+||++|+.
T Consensus 12 ~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~t 91 (132)
T KOG1590|consen 12 QDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNET 91 (132)
T ss_pred HHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhhhhcccchhhhhh
Q psy1183 82 AQIVQGSRFIKYNYIDSKKEQQS 104 (106)
Q Consensus 82 ~q~~Ql~R~~~y~~~~~~~~~~~ 104 (106)
+|++|++|+++|+|..+.++++.
T Consensus 92 aQ~~Qg~Rf~~~~Y~~~~~e~~~ 114 (132)
T KOG1590|consen 92 AQLAQGSRFLNYNYGSTGEEKKK 114 (132)
T ss_pred HHHHHHHHHHHHHhcccchhhcc
Confidence 99999999999999887776653
No 3
>KOG1589|consensus
Probab=100.00 E-value=1.3e-47 Score=275.00 Aligned_cols=97 Identities=26% Similarity=0.444 Sum_probs=91.5
Q ss_pred ccccccceeeeeecccccccccccccccccCCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhhhhHHH
Q psy1183 7 SILSIFSFSSTHFWGPVANWGIPLAAIADLKKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIVQ 86 (106)
Q Consensus 7 s~~~~~~~~TvhFWaP~~kWgl~iA~l~D~~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~~q~~Q 86 (106)
-|..++||+|||||||++|||||+|||+|++||||+||+.|+.||++||+||+|||++|+|+||+||+||+|++++|+||
T Consensus 13 ~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~Q 92 (118)
T KOG1589|consen 13 LWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQ 92 (118)
T ss_pred HhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccchhhhh
Q psy1183 87 GSRFIKYNYIDSKKEQQ 103 (106)
Q Consensus 87 l~R~~~y~~~~~~~~~~ 103 (106)
|.|+++|+..++..+.+
T Consensus 93 L~Ri~~y~~~~~~~~~~ 109 (118)
T KOG1589|consen 93 LTRIANYQQQQKALEGE 109 (118)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999998776655443
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.74 E-value=0.00095 Score=43.83 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhhhhHHHhhhhhhhhccc
Q psy1183 37 KKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIVQGSRFIKYNYID 97 (106)
Q Consensus 37 ~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~~q~~Ql~R~~~y~~~~ 97 (106)
+|..|.+|..+..+..+-+.+|.+|.+.+ +|+.++.+|++-...+++|+.=++.|...+
T Consensus 28 ~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 28 TKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred CCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCCCC
Confidence 69999999999999999999999999988 599999999999999999999888876543
No 5
>KOG1623|consensus
Probab=91.38 E-value=0.19 Score=40.45 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=60.9
Q ss_pred ccccccccccccccc-----CCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhhhhHHHhhhhhhhhcc
Q psy1183 22 PVANWGIPLAAIADL-----KKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIVQGSRFIKYNYI 96 (106)
Q Consensus 22 P~~kWgl~iA~l~D~-----~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~~q~~Ql~R~~~y~~~ 96 (106)
-++|=..-.|+++++ +|..|.+..+.+.|+.+.+..|+=|.+.+ +|..++.-|+.-...++.||.=+.+|...
T Consensus 133 ~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~~QL~Ly~~y~~~ 210 (243)
T KOG1623|consen 133 AVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGLIQLILYFKYPKT 210 (243)
T ss_pred hhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHHHHHHHhhhcCCC
Confidence 344555556677776 48999999999999999999999999988 99999999999999999999977665443
No 6
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=40.60 E-value=11 Score=24.37 Aligned_cols=8 Identities=50% Similarity=1.427 Sum_probs=6.5
Q ss_pred eeeeeccc
Q psy1183 15 SSTHFWGP 22 (106)
Q Consensus 15 ~TvhFWaP 22 (106)
-|+|||-|
T Consensus 49 G~~h~WKP 56 (56)
T PF14795_consen 49 GTLHFWKP 56 (56)
T ss_dssp SSEEEEEE
T ss_pred CeEeecCC
Confidence 37999987
No 7
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=36.66 E-value=23 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.7
Q ss_pred CCcccchhhhHHHHHHHHHHhhhhe
Q psy1183 39 DPSIISGKMTFALCLYSIVFMRFAW 63 (106)
Q Consensus 39 ppe~IS~~qt~aL~~tg~iw~Rys~ 63 (106)
+.|++-.+-|.+||+-|..++=|++
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l 50 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLL 50 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHH
Confidence 4588999999999999999987764
No 8
>PLN02434 fatty acid hydroxylase
Probab=35.38 E-value=11 Score=30.21 Aligned_cols=71 Identities=10% Similarity=0.233 Sum_probs=44.7
Q ss_pred hhcccccccceeeeeeccccccccccccccc--ccCCCCcccchhhhHHHHHHHH-HHh-------hhheeeeccchhhh
Q psy1183 4 RISSILSIFSFSSTHFWGPVANWGIPLAAIA--DLKKDPSIISGKMTFALCLYSI-VFM-------RFAWKVQPRNLLLL 73 (106)
Q Consensus 4 ~~~s~~~~~~~~TvhFWaP~~kWgl~iA~l~--D~~kppe~IS~~qt~aL~~tg~-iw~-------Rys~~I~P~Ny~L~ 73 (106)
|+..+..+.-+..|+.|.|.+=|+.+++.+. .++ ...+.....++.+.|+ +|+ ||-+-+.|+|+...
T Consensus 40 rlF~~~~lE~lsrt~w~vvp~iw~pvv~~~~~~~~~---~~~~~~~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~ 116 (237)
T PLN02434 40 RFFESDVLEFLTRTVWWAVPLIWLPVVCWCLVKSVR---MGLPLSAVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGN 116 (237)
T ss_pred CCCCcHHHHHhcCCchhhhHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHH
Confidence 4555666667778899998888887764332 122 1122223445555664 444 99999999998665
Q ss_pred hhhh
Q psy1183 74 SCHF 77 (106)
Q Consensus 74 acn~ 77 (106)
..|+
T Consensus 117 ~~hf 120 (237)
T PLN02434 117 TAHY 120 (237)
T ss_pred HHHH
Confidence 5554
No 9
>KOG1623|consensus
Probab=30.06 E-value=50 Score=26.70 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=43.9
Q ss_pred CCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhhhhHHHhhhhhhhhc
Q psy1183 37 KKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIVQGSRFIKYNY 95 (106)
Q Consensus 37 ~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~~q~~Ql~R~~~y~~ 95 (106)
+|..|.+|+-=--.=.+-+++|+||.+...= .+++-.+|.+....+..=+.=++-|..
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~ 91 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAP 91 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecC
Confidence 6888888865554445677999999965443 799999999999988877776665543
No 10
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=24.56 E-value=1.1e+02 Score=22.64 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhh------hheeeecc-chhhhhhhhhhhhhhHHHhhhhhhhh
Q psy1183 48 TFALCLYSIVFMR------FAWKVQPR-NLLLLSCHFTNECAQIVQGSRFIKYN 94 (106)
Q Consensus 48 t~aL~~tg~iw~R------ys~~I~P~-Ny~L~acn~~~~~~q~~Ql~R~~~y~ 94 (106)
...|+++|.++++ +..-|.|| .+++..+=+.+...+++|+.|..+-+
T Consensus 4 ~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~ 57 (182)
T PF09323_consen 4 FLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRWFRPK 57 (182)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777776665 55678888 45777777777788888888877643
No 11
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=1.6e+02 Score=20.70 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCCCcccchhhhHHHHHHHHHHhhhheeeeccchhhhhhhhhhhhhhHHHhhhhhhhhcc
Q psy1183 37 KKDPSIISGKMTFALCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIVQGSRFIKYNYI 96 (106)
Q Consensus 37 ~kppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~acn~~~~~~q~~Ql~R~~~y~~~ 96 (106)
.|+...||..|-.-+..-=.+|.=|+..+. ++-+.-||..+....+.=++=+++|.+.
T Consensus 30 tK~t~~Isl~~fii~~ia~~lwliygILi~--~lPii~aN~i~~il~liIl~~kI~~~~k 87 (89)
T COG4095 30 TKNTASISLPMFIILNIALFLWLIYGILIN--DLPIIIANIISFILSLIILFYKIKYILK 87 (89)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHc--cCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 488899999987766655578888887776 8899999999999999999888888654
No 12
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.23 E-value=66 Score=23.82 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=34.8
Q ss_pred hhhheee---eccchhhhhhhhhhhhhhHHHhhhhhhhhcccchh
Q psy1183 59 MRFAWKV---QPRNLLLLSCHFTNECAQIVQGSRFIKYNYIDSKK 100 (106)
Q Consensus 59 ~Rys~~I---~P~Ny~L~acn~~~~~~q~~Ql~R~~~y~~~~~~~ 100 (106)
|+|.+++ +|=||.+++--++....++.-|.|-++-+...|..
T Consensus 23 mlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 23 MLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred HHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhccccccc
Confidence 5666766 68899999999999999999999999977666544
Done!