Query psy1183
Match_columns 106
No_of_seqs 103 out of 423
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:03:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n91_A Uncharacterized protein 24.5 6.5 0.00022 31.7 -2.2 25 62-86 159-183 (323)
2 3bbn_B Ribosomal protein S2; s 23.4 25 0.00087 26.7 1.0 24 23-46 176-199 (231)
3 3r8n_B 30S ribosomal protein S 20.2 32 0.0011 25.9 1.0 23 24-46 169-191 (218)
4 2vqe_B 30S ribosomal protein S 19.3 34 0.0012 26.5 0.9 23 24-46 178-200 (256)
5 3hjr_A Extracellular serine pr 19.0 28 0.00095 28.4 0.4 20 14-33 533-554 (600)
6 1vi6_A 30S ribosomal protein S 16.8 40 0.0014 25.3 0.8 23 24-46 135-157 (208)
7 2xzm_B RPS0E; ribosome, transl 15.1 50 0.0017 25.3 1.0 23 24-46 134-156 (241)
8 3bch_A 40S ribosomal protein S 12.8 59 0.002 25.2 0.8 23 24-46 171-193 (253)
9 3j20_B 30S ribosomal protein S 12.0 65 0.0022 24.0 0.8 23 24-46 131-153 (202)
10 2oxa_A Extracellular serine pr 9.8 73 0.0025 26.3 0.4 22 14-35 533-556 (600)
No 1
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=24.50 E-value=6.5 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=22.6
Q ss_pred heeeeccchhhhhhhhhhhhhhHHH
Q psy1183 62 AWKVQPRNLLLLSCHFTNECAQIVQ 86 (106)
Q Consensus 62 s~~I~P~Ny~L~acn~~~~~~q~~Q 86 (106)
.|.|+|++|.|+++...|--.|.|+
T Consensus 159 ~w~v~pkdyvLy~vky~N~y~G~Yl 183 (323)
T 3n91_A 159 DWSILPQNFVLYAVKYVNPWHGEYL 183 (323)
T ss_dssp GEEECCCSEEEEEEEEECTTCEEEE
T ss_pred ccccCCCcEEEEEEEEeccCceEEE
Confidence 4999999999999999999888875
No 2
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=23.43 E-value=25 Score=26.71 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred ccccccccccccccCCCCcccchh
Q psy1183 23 VANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 23 ~~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
..|=|||+.|+.|.+-||+.|+.+
T Consensus 176 A~~l~IPvIaivDTn~dp~~Vdy~ 199 (231)
T 3bbn_B 176 CITLGIPTICLIDTNCNPDLADIS 199 (231)
T ss_dssp HHTTTCCEEECCCSSSCCSSCSEE
T ss_pred HHHhCCCEEEEecCCCCccceeEE
Confidence 468899999999999999999854
No 3
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=20.17 E-value=32 Score=25.85 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.3
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.+=|||+.|+.|.+-||+.|+.+
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~ 191 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEE
T ss_pred HHhCCCEEEEEeCcCCCcccceE
Confidence 47799999999999999999854
No 4
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=19.25 E-value=34 Score=26.49 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.|=|||+.|+.|.+-||+.|+.+
T Consensus 178 ~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 178 RKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp HHTTCCCEECCCTTSCGGGCSEE
T ss_pred HHcCCCEEEEecCCCCchhcceE
Confidence 57799999999999999999754
No 5
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=19.04 E-value=28 Score=28.43 Aligned_cols=20 Identities=20% Similarity=0.684 Sum_probs=16.4
Q ss_pred eeeeeecc--cccccccccccc
Q psy1183 14 FSSTHFWG--PVANWGIPLAAI 33 (106)
Q Consensus 14 ~~TvhFWa--P~~kWgl~iA~l 33 (106)
+.|+|||| |.=+|-|-+.-.
T Consensus 533 f~s~~~wGE~~~G~WtL~V~D~ 554 (600)
T 3hjr_A 533 MLSNKFYGESAQGTWRLEVTDV 554 (600)
T ss_dssp EEECTTTTCBCCEEEEEEEEEB
T ss_pred eecccccCCCCCccEEEEEEEC
Confidence 57999999 888999987543
No 6
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=16.77 E-value=40 Score=25.32 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.|=|||+.|+.|.+-||+.|+.+
T Consensus 135 ~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 135 TAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHhCCCEEEEeCCCCCccccCEE
Confidence 57899999999999999998744
No 7
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=15.12 E-value=50 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.|=|||+.|+.|.+-||+.|+.+
T Consensus 134 ~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 134 SYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp TTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHhCCCEEEEecCCCCcccccEE
Confidence 57899999999999999988744
No 8
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=12.84 E-value=59 Score=25.23 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=20.3
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.|=|||+.|+.|.+-||+.|+.+
T Consensus 171 ~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 171 SYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHhCCCEEEEEcCCCCcccCceE
Confidence 57899999999999999998744
No 9
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=12.03 E-value=65 Score=24.01 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.7
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.|=|||+.|+.|.+-||+.|+.+
T Consensus 131 ~~l~IP~Ial~DTn~~p~~Vd~~ 153 (202)
T 3j20_B 131 VEIGIPIVALVDTENLLSYVDLA 153 (202)
T ss_dssp HHHTCCEEEEECTTCCCTTCCEE
T ss_pred HHcCCCEEEEEcCCCCccccCEE
Confidence 45689999999999999998754
No 10
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A
Probab=9.82 E-value=73 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.691 Sum_probs=17.7
Q ss_pred eeeeeecc--cccccccccccccc
Q psy1183 14 FSSTHFWG--PVANWGIPLAAIAD 35 (106)
Q Consensus 14 ~~TvhFWa--P~~kWgl~iA~l~D 35 (106)
+.|+|||| |.=+|-|-+.-..+
T Consensus 533 f~s~~~wgE~~~G~WtL~V~D~~~ 556 (600)
T 2oxa_A 533 MLSNKFYGESAQGTWRLEVTDVAN 556 (600)
T ss_dssp EEECTTTTCBCCEEEEEEEEEBCC
T ss_pred EEehhhcCCCCCCcEEEEEEECCC
Confidence 78899999 77789999766554
Done!