Query psy1183
Match_columns 106
No_of_seqs 103 out of 423
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 20:03:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1183.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1183hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 22.1 13 0.00094 25.9 0.9 23 24-46 169-191 (218)
2 d2oqoa1 d.2.1.10 (A:57-243) Pe 22.1 9 0.00066 26.5 0.1 41 11-53 102-142 (187)
3 d1v54j_ f.23.4.1 (J:) Mitochon 20.8 11 0.00083 22.0 0.3 25 39-63 26-50 (58)
4 d2uubb1 c.23.15.1 (B:7-240) Ri 16.5 19 0.0014 25.4 0.8 23 24-46 172-194 (234)
5 d2olua1 d.2.1.10 (A:68-292) Pe 15.8 14 0.001 26.2 -0.1 41 11-53 122-162 (225)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 12.2 60 0.0044 16.5 1.8 17 47-63 6-22 (32)
7 d1vi6a_ c.23.15.1 (A:) Ribosom 8.9 47 0.0034 22.7 0.8 22 24-45 130-151 (193)
8 d2fmpa2 a.60.12.1 (A:92-148) D 7.2 46 0.0034 18.7 0.1 40 14-53 9-51 (57)
9 d1vjua_ d.248.1.1 (A:) Hypothe 5.8 60 0.0043 23.9 0.0 20 59-78 91-110 (302)
10 d1xd7a_ a.4.5.55 (A:) Hypothet 5.6 86 0.0063 18.9 0.8 14 34-48 58-71 (127)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=22.08 E-value=13 Score=25.89 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.5
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.+=+||+.|+.|.+-+|+.|+.+
T Consensus 169 ~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 169 NNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp HHTTCCEEECCCSSSCGGGCTEE
T ss_pred HHcCCCEEEEeeCCCCCccCcee
Confidence 47799999999999999999854
No 2
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=22.08 E-value=9 Score=26.51 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=32.6
Q ss_pred ccceeeeeecccccccccccccccccCCCCcccchhhhHHHHH
Q psy1183 11 IFSFSSTHFWGPVANWGIPLAAIADLKKDPSIISGKMTFALCL 53 (106)
Q Consensus 11 ~~~~~TvhFWaP~~kWgl~iA~l~D~~kppe~IS~~qt~aL~~ 53 (106)
+.|++++.| |+=. +|+--|+-.=+.|||..++..|.+.|+.
T Consensus 102 e~YLN~v~~-G~~~-yGi~aAa~~yFgk~~~~Lt~~EaA~La~ 142 (187)
T d2oqoa1 102 ELYLNQIYL-GSGA-YGVEAAAQVYFGKHVWELSLDEAALLAA 142 (187)
T ss_dssp HHHHHHCBC-STTC-BSHHHHHHHHHSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHccC-CCch-hhHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 456666654 7655 6888888888999999999999988864
No 3
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.84 E-value=11 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCcccchhhhHHHHHHHHHHhhhhe
Q psy1183 39 DPSIISGKMTFALCLYSIVFMRFAW 63 (106)
Q Consensus 39 ppe~IS~~qt~aL~~tg~iw~Rys~ 63 (106)
++|.|-.+-|.+||+-|.+++=|++
T Consensus 26 ~~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 26 ATDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999987654
No 4
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=16.53 E-value=19 Score=25.40 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.0
Q ss_pred cccccccccccccCCCCcccchh
Q psy1183 24 ANWGIPLAAIADLKKDPSIISGK 46 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~~ 46 (106)
.+=+||+-|+.|.+-+|+.|+.+
T Consensus 172 ~~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 172 RKLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp HHHTCCEEEEECTTSCGGGCSEE
T ss_pred HhhCCCEEEEeecCCCccCCcEE
Confidence 46789999999999999999753
No 5
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=15.77 E-value=14 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=33.7
Q ss_pred ccceeeeeecccccccccccccccccCCCCcccchhhhHHHHH
Q psy1183 11 IFSFSSTHFWGPVANWGIPLAAIADLKKDPSIISGKMTFALCL 53 (106)
Q Consensus 11 ~~~~~TvhFWaP~~kWgl~iA~l~D~~kppe~IS~~qt~aL~~ 53 (106)
+.|++++ +||+= -+|+--|+-.=+.|||..+|..+.+-|+.
T Consensus 122 e~YLN~v-~~G~~-~yGi~aAa~~YFgK~~~~Lt~~EaA~La~ 162 (225)
T d2olua1 122 QVYLNKI-YYSDG-VTGIKAAAKYYFNKDLKDLNLAEEAYLAG 162 (225)
T ss_dssp HHHHHHC-BCSTT-EESHHHHHHHHHSCCGGGCCHHHHHHHHH
T ss_pred HHHHHhh-hccCC-cccHHHHHHHHhccChhhhchhhhhhhee
Confidence 5677777 66775 46888888888999999999999988864
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.19 E-value=60 Score=16.54 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhhhhe
Q psy1183 47 MTFALCLYSIVFMRFAW 63 (106)
Q Consensus 47 qt~aL~~tg~iw~Rys~ 63 (106)
-.+|+.-+|+||.-|.+
T Consensus 6 l~aa~lsfglifvgwgl 22 (32)
T d2e74f1 6 LYAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhHH
Confidence 46789999999988864
No 7
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.85 E-value=47 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.4
Q ss_pred cccccccccccccCCCCcccch
Q psy1183 24 ANWGIPLAAIADLKKDPSIISG 45 (106)
Q Consensus 24 ~kWgl~iA~l~D~~kppe~IS~ 45 (106)
.|=+||+.|+.|.+-+|+.|+.
T Consensus 130 ~~l~IPvI~ivDTn~~p~~vdy 151 (193)
T d1vi6a_ 130 TAVGIPVVALCDSNNSSADVDL 151 (193)
T ss_dssp HHTTCCEEEEECTTCCCTTCSE
T ss_pred HHcCCCeeeEeccCCCCcccce
Confidence 4678999999999999999864
No 8
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.19 E-value=46 Score=18.74 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=24.7
Q ss_pred eeeeeecccc--cccc-cccccccccCCCCcccchhhhHHHHH
Q psy1183 14 FSSTHFWGPV--ANWG-IPLAAIADLKKDPSIISGKMTFALCL 53 (106)
Q Consensus 14 ~~TvhFWaP~--~kWg-l~iA~l~D~~kppe~IS~~qt~aL~~ 53 (106)
+..||==||. -||- --+-.|.|+++++++++..|...|--
T Consensus 9 l~~I~GvGp~~A~~l~~~Gi~ti~dLr~~~~~Lt~~Q~iGLky 51 (57)
T d2fmpa2 9 LTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKY 51 (57)
T ss_dssp HTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHT
T ss_pred HhccccccHHHHHHHHHhCCCCHHHHHhhhhhCCHHHHHHHHH
Confidence 3444444553 2441 12335678888899999999877643
No 9
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]}
Probab=5.78 E-value=60 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.0
Q ss_pred hhhheeeeccchhhhhhhhh
Q psy1183 59 MRFAWKVQPRNLLLLSCHFT 78 (106)
Q Consensus 59 ~Rys~~I~P~Ny~L~acn~~ 78 (106)
|--|+||.|+|-..-++|+-
T Consensus 91 tGiSvV~HP~NP~vPt~H~N 110 (302)
T d1vjua_ 91 MGVSLVIHPKNPHVPTSHAN 110 (302)
T ss_dssp EEEEEEEEESSTTSCEEEEE
T ss_pred ecceeeeeccCCcCcceeec
Confidence 34589999999999999974
No 10
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=5.64 E-value=86 Score=18.85 Aligned_cols=14 Identities=50% Similarity=0.449 Sum_probs=11.6
Q ss_pred cccCCCCcccchhhh
Q psy1183 34 ADLKKDPSIISGKMT 48 (106)
Q Consensus 34 ~D~~kppe~IS~~qt 48 (106)
. +.|||+.||...-
T Consensus 58 y-Lar~p~~Itl~dI 71 (127)
T d1xd7a_ 58 S-LKKDPADISLLEV 71 (127)
T ss_dssp E-ESSCGGGCBHHHH
T ss_pred c-ccCCHHhCcHHHH
Confidence 5 8999999997654
Done!