RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1183
         (106 letters)



>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
           sobria} PDB: 3hjr_A
          Length = 600

 Score = 27.6 bits (60), Expect = 0.92
 Identities = 5/23 (21%), Positives = 7/23 (30%), Gaps = 2/23 (8%)

Query: 6   SSILSIFSFSSTHFWG--PVANW 26
           +  L      S  F+G      W
Sbjct: 525 TKGLRDMRMLSNKFYGESAQGTW 547


>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
           DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
           SCOP: b.18.1.20 c.41.1.1
          Length = 471

 Score = 26.6 bits (58), Expect = 2.0
 Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 12  FSFSSTHFWG--PVANW 26
           ++F +TH W   P   W
Sbjct: 424 WAFMTTHSWDEDPAGEW 440


>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
           like protease, serine protease; HET: NDG; 1.90A
           {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
           1r64_A* 1ot5_A*
          Length = 503

 Score = 25.8 bits (56), Expect = 2.9
 Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 12  FSFSSTHFWG--PVANW 26
           ++F S   WG   V +W
Sbjct: 439 WTFMSVAHWGENGVGDW 455


>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding,
          metal-binding, zinc- finger, metal binding protein; NMR
          {Homo sapiens} PDB: 2ko0_A 2l1g_A*
          Length = 87

 Score = 23.7 bits (51), Expect = 9.1
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 51 LCLYSIVFMRFAWKVQPRNLLLLSCHFTNECAQIVQGSRFIKYNYI 96
          LC      +R       +   + S HFT +C +    ++ +K N +
Sbjct: 32 LCKEWEAAVRRKNFKPTKYSSICSEHFTPDCFKRECNNKLLKENAV 77


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,516,144
Number of extensions: 72188
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 6
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)