BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11830
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 204 DWQKGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGY 262
W G+ CKV GF+ +SI T+ MI+++R+ I R + A+K HR + +++
Sbjct: 99 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 158
Query: 263 VYASIMGAL-PMFGISSYSTTSI-C-LPMDTRHLGSKIYVHTLLLFSSLVFAMICV---C 316
S++ A+ P+FG +Y+ + C D S + L +F F I + C
Sbjct: 159 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 218
Query: 317 YFQIYSSLGN 326
YF I S+ N
Sbjct: 219 YFNIVMSVSN 228
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 204 DWQKGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGY 262
W G+ CKV GF+ +SI T+ MI+++R+ I R + A+K HR + +++
Sbjct: 100 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 159
Query: 263 VYASIMGAL-PMFGISSYSTTSI-C-LPMDTRHLGSKIYVHTLLLFSSLVFAMICV---C 316
S++ A+ P+FG +Y+ + C D S + L +F F I + C
Sbjct: 160 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 219
Query: 317 YFQIYSSLGN 326
YF I S+ N
Sbjct: 220 YFNIVMSVSN 229
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 225 SIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG---ISSYST 281
S+F+L I +ER+ ++ + N R I +V + I+G LP+ G IS+ S+
Sbjct: 149 SVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSS 208
Query: 282 TSICLPMDTRHLGSKIYVHTLLLFSSLVFAM----ICVCYFQIYS 322
S LP+ +H +LF + VF + I + Y +IYS
Sbjct: 209 CSTVLPLYHKH---------YILFCTTVFTLLLLSIVILYCRIYS 244
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V ++ ++V + + LA AD+ + +LAI + F A
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVG----VLAIPFAITISTGFCAAC---- 74
Query: 208 GYGCK-VAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKL-TIHRTTYFILVGYVYA 265
+GC +A FV V +Q SIF+L I ++R+ +I+ L N L T R I + +V +
Sbjct: 75 -HGCLFIACFVLVL-TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 132
Query: 266 SIMGALPMFG 275
+G PM G
Sbjct: 133 FAIGLTPMLG 142
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V ++ ++V + + LA AD+ + + AI + F A
Sbjct: 48 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAAC---- 99
Query: 208 GYGCK-VAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKL-TIHRTTYFILVGYVYA 265
+GC +A FV V +Q SIF+L I ++R+ +I+ L N L T R I + +V +
Sbjct: 100 -HGCLFIACFVLVL-TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 157
Query: 266 SIMGALPMFG 275
+G PM G
Sbjct: 158 FAIGLTPMLG 167
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAAHILMKM---WTF 109
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI+TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 110 GNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 169
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 170 GLTSFLPI 177
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V ++ ++V + + LA AD+ + +LAI + F A
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVG----VLAIPFAITISTGFCAAC---- 74
Query: 208 GYGCK-VAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKL-TIHRTTYFILVGYVYA 265
+GC +A FV V A Q SIF+L I ++R+ +I L N L T R I + +V +
Sbjct: 75 -HGCLFIACFVLVLA-QSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLS 132
Query: 266 SIMGALPMFG 275
+G PM G
Sbjct: 133 FAIGLTPMLG 142
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL-AIKDLQSTEVYFNYAYDWQ 206
GN V+ ++V + I+ LA ADL M ++ A L T + N+ W
Sbjct: 22 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNF---W- 77
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 78 ----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 133
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 134 GLTSFLPI 141
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V ++ ++V + + LA AD+ + + AI + F A
Sbjct: 38 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAAC---- 89
Query: 208 GYGCK-VAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKL-TIHRTTYFILVGYVYA 265
+GC +A FV V +Q SIF+L I ++R+ +I+ L N L T R I + +V +
Sbjct: 90 -HGCLFIACFVLVL-TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 147
Query: 266 SIMGALPMFG 275
+G PM G
Sbjct: 148 FAIGLTPMLG 157
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 149 NAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG 208
N L VT+ ++ +++ +LA+ADL M F + S YF +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPT---- 109
Query: 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268
GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 110 -GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 269 GALPMFGISSY 279
A P+ G S Y
Sbjct: 169 AAPPLVGWSRY 179
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 149 NAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG 208
N L VT+ ++ +++ +LA+ADL M F + S YF +
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPT---- 108
Query: 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268
GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 109 -GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 167
Query: 269 GALPMFGISSY 279
A P+ G S Y
Sbjct: 168 AAPPLVGWSRY 178
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 149 NAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG 208
N L VT+ ++ +++ +LA+ADL M F + S YF +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPT---- 109
Query: 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268
GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 110 -GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 269 GALPMFGISSY 279
A P+ G S Y
Sbjct: 169 AAPPLVGWSRY 179
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 149 NAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG 208
N L VT+ ++ +++ +LA+ADL M F + S YF +
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPT---- 108
Query: 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268
GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 109 -GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 167
Query: 269 GALPMFGISSY 279
A P+ G S Y
Sbjct: 168 AAPPLVGWSRY 178
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 149 NAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG 208
N L VT+ ++ +++ +LA+ADL M F + S YF +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPT---- 109
Query: 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268
GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 110 -GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 269 GALPMFGISSY 279
A P+ G S Y
Sbjct: 169 AAPPLVGWSRY 179
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 149 NAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG 208
N L VT+ ++ +++ +LA+ADL M F + S YF +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT--SLHGYFVFGPT---- 109
Query: 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268
GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 110 -GCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 269 GALPMFGISSY 279
A P+ G S Y
Sbjct: 169 AAPPLVGWSRY 179
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 27 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAAHILMKM---WTF 78
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 79 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 138
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 139 GLTSFLPI 146
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 50 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAAHILMKM---WTF 101
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 102 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 161
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 162 GLTSFLPI 169
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 51 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAAHILMKM---WTF 102
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 103 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 162
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 163 GLTSFLPI 170
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ V L T K+ I +LA+AD L+LL + Q T++ + W
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALAD-----TLVLLTLP-FQGTDILLGF---WPF 192
Query: 208 GYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVG-YVYA 265
G CK + + S FTL ++++R+ +I + A + + V + A
Sbjct: 193 GNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALA 252
Query: 266 SIMG-ALPMFGISSYSTTSI-CL---PMDTRHLGSKIYVHTLLLFSSLVFAM-ICVCY 317
S++G + + G + I CL P + G ++ + LFS +V + I VCY
Sbjct: 253 SVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGP-VFAICIFLFSFIVPVLVISVCY 309
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL-AIKDLQSTEVYFNYAYDWQ 206
GN V+ ++V + I+ LA ADL M ++ A L T + N+ W
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNF---W- 254
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 255 ----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 310
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 311 GLTSFLPI 318
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 87 PGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQ 146
P + + A+ + R E+SVPR+ +M F + + +DL E D
Sbjct: 486 PDHVDLAALEIYRDRERSVPRYNEFRRSM------FMIPITKWEDLTEDEEAIEVLDDVY 539
Query: 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL-LLLAIKDLQSTEVY 198
G+ L + + +EK + F IS AFY+ L++A + L++ +
Sbjct: 540 DGDVEELDLLVGLMAEKKIKGFAISE-------TAFYIFLIMATRRLEADRFF 585
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 57 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAAHILMKM---WTF 108
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 109 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 168
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 169 GLTSFLPI 176
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAAHILMKM---WTF 109
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 110 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 169
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 170 GLTSFLPI 177
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ ++V + I+ LA ADL M LA+ + + W
Sbjct: 26 GNVLVITAIAKFERLQTVTNYFITSLACADLVMG-----LAVVPFGAACILMKM---WTF 77
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
G + C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 78 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 137
Query: 266 SIMGALPM 273
+ LP+
Sbjct: 138 GLTSFLPI 145
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 209 YGCK-VAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKL-TIHRTTYFILVGYVYAS 266
+GC +A FV V + SIF+L I ++R+ +I+ L N L T R I + +V +
Sbjct: 75 HGCLFIACFVLVLTAS-SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 267 IMGALPMFG 275
+G PM G
Sbjct: 134 AIGLTPMLG 142
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 34 VIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVL 93
+++L N I+ I AFNG+Q+ + S N +F G + +
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDEL------------NLSDNNNLEELPNDVFHGASGPV 205
Query: 94 AVTLSRTSEKSVPRFLISHL 113
+ +SRT S+P + + +L
Sbjct: 206 ILDISRTRIHSLPSYGLENL 225
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 155 VTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYG---C 211
+ L+ ++V + + +LA A+ MA + +T V F YA + YG C
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAEASMAAF----------NTVVNFTYAVHNEWYYGLFYC 105
Query: 212 KVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGAL 271
K F + A SI+++ + +R+ +I L +L+ T I V +V A ++
Sbjct: 106 KFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL-QPRLSATATKVVICVIWVLALLLA-- 162
Query: 272 PMFGISSYSTTS 283
F YSTT
Sbjct: 163 --FPQGYYSTTE 172
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 18/178 (10%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ V + T K+ I +LA+AD L ++ L T + N
Sbjct: 34 GNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNIL----- 88
Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILV-GYVYAS 266
CK+ + + SIFTL ++++R+ ++ + A R + V ++ +S
Sbjct: 89 ---CKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSS 145
Query: 267 IMGALPMF-GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFA------MICVCY 317
+G MF + Y SI + H Y LL +FA +I VCY
Sbjct: 146 AIGLPVMFMATTKYRQGSIDCTLTFSH--PTWYWENLLKICVFIFAFIMPVLIITVCY 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,848,113
Number of Sequences: 62578
Number of extensions: 359332
Number of successful extensions: 777
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 54
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)