Query psy11830
Match_columns 387
No_of_seqs 401 out of 2097
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:04:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2087|consensus 100.0 8.5E-33 1.8E-37 255.4 16.2 207 63-329 3-224 (363)
2 KOG4219|consensus 100.0 2.4E-31 5.3E-36 248.1 10.4 226 117-384 35-278 (423)
3 PHA03234 DNA packaging protein 100.0 7.4E-29 1.6E-33 238.2 11.6 170 147-327 48-227 (338)
4 PHA02834 chemokine receptor-li 99.9 2.8E-26 6E-31 219.7 14.9 186 118-328 29-220 (323)
5 PHA03235 DNA packaging protein 99.9 1.5E-25 3.3E-30 220.1 14.9 192 114-329 29-236 (409)
6 KOG4220|consensus 99.9 3.7E-26 8.1E-31 213.0 7.8 188 120-332 33-228 (503)
7 PHA02638 CC chemokine receptor 99.9 1.2E-24 2.5E-29 214.7 15.9 187 116-328 98-304 (417)
8 PF00001 7tm_1: 7 transmembran 99.9 3.6E-25 7.9E-30 202.4 3.0 177 148-332 1-183 (257)
9 PHA03087 G protein-coupled che 99.9 2.1E-22 4.6E-27 193.9 16.4 188 118-329 41-235 (335)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.4 2.9E-12 6.2E-17 118.7 11.0 168 147-329 6-176 (257)
11 KOG2087|consensus 99.3 1.6E-12 3.4E-17 121.2 3.8 212 98-387 6-219 (363)
12 PF10328 7TM_GPCR_Srx: Serpent 99.0 3E-09 6.6E-14 99.5 11.3 177 147-330 9-190 (274)
13 PF10324 7TM_GPCR_Srw: Serpent 98.8 1.6E-08 3.5E-13 96.6 9.3 186 147-333 12-228 (318)
14 PF13855 LRR_8: Leucine rich r 98.6 3.9E-08 8.5E-13 69.9 4.1 47 7-53 2-48 (61)
15 PF11710 Git3: G protein-coupl 98.6 1.7E-06 3.8E-11 76.8 13.6 159 160-329 30-199 (201)
16 PF10323 7TM_GPCR_Srv: Serpent 98.4 1.3E-07 2.8E-12 88.9 3.8 162 162-329 29-195 (283)
17 PF05462 Dicty_CAR: Slime mold 98.3 7.4E-06 1.6E-10 77.3 10.8 127 147-288 22-149 (303)
18 PF12799 LRR_4: Leucine Rich r 98.2 9E-07 2E-11 58.3 2.5 42 6-48 1-42 (44)
19 PF05296 TAS2R: Mammalian tast 98.2 1.4E-05 3.1E-10 75.8 10.7 178 147-332 22-215 (303)
20 KOG4237|consensus 98.1 8.7E-07 1.9E-11 83.9 1.2 71 6-78 67-139 (498)
21 PF03402 V1R: Vomeronasal orga 97.9 0.00013 2.7E-09 67.3 10.9 162 161-332 6-182 (265)
22 PF13855 LRR_8: Leucine rich r 97.8 2.1E-05 4.6E-10 55.7 2.9 37 6-42 25-61 (61)
23 KOG4194|consensus 97.4 1.9E-05 4.2E-10 78.4 -1.3 84 5-90 316-403 (873)
24 PF10292 7TM_GPCR_Srab: Serpen 97.4 0.0064 1.4E-07 58.3 15.3 121 147-268 32-153 (324)
25 KOG4237|consensus 97.3 3.4E-05 7.3E-10 73.4 -0.8 83 6-90 274-357 (498)
26 PF10321 7TM_GPCR_Srt: Serpent 97.3 0.0021 4.5E-08 61.1 11.2 179 118-329 33-227 (313)
27 KOG4194|consensus 97.1 0.00014 3.1E-09 72.4 1.0 48 6-53 197-244 (873)
28 PF00002 7tm_2: 7 transmembran 96.8 0.00049 1.1E-08 62.9 1.6 126 147-286 16-144 (242)
29 KOG4219|consensus 96.7 0.0016 3.5E-08 62.4 4.2 47 84-130 48-94 (423)
30 PF14580 LRR_9: Leucine-rich r 96.4 0.0011 2.3E-08 57.6 0.9 39 7-47 43-81 (175)
31 PF14580 LRR_9: Leucine-rich r 96.4 0.0013 2.8E-08 57.1 1.2 45 6-50 64-108 (175)
32 PF00560 LRR_1: Leucine Rich R 96.4 0.0024 5.2E-08 35.1 1.8 18 31-48 1-18 (22)
33 PF00560 LRR_1: Leucine Rich R 96.2 0.0023 4.9E-08 35.3 1.2 22 7-29 1-22 (22)
34 PF10317 7TM_GPCR_Srd: Serpent 96.1 0.083 1.8E-06 49.8 12.0 123 147-274 14-141 (292)
35 smart00370 LRR Leucine-rich re 96.0 0.0027 5.8E-08 36.4 0.9 23 29-51 1-23 (26)
36 smart00369 LRR_TYP Leucine-ric 96.0 0.0027 5.8E-08 36.4 0.9 23 29-51 1-23 (26)
37 PF10316 7TM_GPCR_Srbc: Serpen 95.7 0.093 2E-06 48.9 10.1 96 147-248 21-118 (273)
38 KOG0444|consensus 95.6 0.0028 6.1E-08 64.0 -0.4 46 4-49 124-169 (1255)
39 smart00365 LRR_SD22 Leucine-ri 95.1 0.013 2.7E-07 33.7 1.4 21 29-49 1-21 (26)
40 PF02101 Ocular_alb: Ocular al 94.9 0.28 6.1E-06 47.1 10.5 97 167-270 68-170 (405)
41 KOG0472|consensus 94.7 0.01 2.2E-07 57.1 0.5 42 6-48 252-293 (565)
42 PF02117 7TM_GPCR_Sra: Serpent 94.6 0.41 8.8E-06 46.0 11.2 97 149-247 38-137 (328)
43 PF02118 Srg: Srg family chemo 94.4 0.091 2E-06 48.8 6.2 57 210-267 80-137 (275)
44 PF10326 7TM_GPCR_Str: Serpent 94.4 0.029 6.3E-07 53.2 2.8 111 147-257 14-128 (307)
45 PF13504 LRR_7: Leucine rich r 94.3 0.026 5.5E-07 28.9 1.2 15 31-45 2-16 (17)
46 smart00369 LRR_TYP Leucine-ric 93.8 0.027 5.7E-07 32.2 0.8 22 6-27 2-23 (26)
47 smart00370 LRR Leucine-rich re 93.8 0.027 5.7E-07 32.2 0.8 22 6-27 2-23 (26)
48 PF13504 LRR_7: Leucine rich r 93.7 0.038 8.2E-07 28.2 1.2 16 7-22 2-17 (17)
49 KOG0444|consensus 93.4 0.032 7E-07 56.7 1.2 47 6-53 103-149 (1255)
50 PLN00113 leucine-rich repeat r 93.2 0.035 7.7E-07 61.2 1.2 43 8-50 501-543 (968)
51 KOG0618|consensus 93.1 0.02 4.3E-07 60.5 -0.9 46 4-49 381-426 (1081)
52 KOG1644|consensus 93.0 0.058 1.2E-06 47.4 2.0 83 5-91 41-125 (233)
53 PF03383 Serpentine_r_xa: Caen 93.0 0.12 2.5E-06 43.5 3.7 72 217-288 50-129 (153)
54 PLN00113 leucine-rich repeat r 92.7 0.079 1.7E-06 58.5 3.0 48 6-53 523-570 (968)
55 PLN03150 hypothetical protein; 92.6 0.069 1.5E-06 55.9 2.2 46 8-53 420-465 (623)
56 PF10322 7TM_GPCR_Sru: Serpent 92.4 0.88 1.9E-05 43.2 9.2 111 212-328 104-226 (307)
57 PF13306 LRR_5: Leucine rich r 92.4 0.12 2.5E-06 41.8 3.0 45 7-53 13-57 (129)
58 PF10327 7TM_GPCR_Sri: Serpent 91.3 3.8 8.2E-05 38.9 12.3 180 147-330 24-226 (303)
59 KOG0617|consensus 91.3 0.033 7.1E-07 47.7 -1.5 68 6-77 33-100 (264)
60 KOG4579|consensus 91.0 0.042 9.2E-07 45.4 -1.1 47 6-53 53-99 (177)
61 KOG4579|consensus 91.0 0.026 5.6E-07 46.6 -2.4 72 7-82 78-150 (177)
62 KOG4193|consensus 90.8 0.96 2.1E-05 47.0 8.2 144 153-323 341-491 (610)
63 KOG1259|consensus 90.5 0.1 2.2E-06 48.6 0.7 46 6-52 284-329 (490)
64 PF13306 LRR_5: Leucine rich r 90.5 0.28 6E-06 39.6 3.3 46 6-53 35-80 (129)
65 PF06681 DUF1182: Protein of u 90.2 0.54 1.2E-05 41.3 4.9 39 209-247 115-153 (226)
66 PLN03150 hypothetical protein; 90.1 0.14 3.1E-06 53.6 1.5 54 6-61 442-495 (623)
67 PF12799 LRR_4: Leucine Rich r 89.9 0.17 3.7E-06 33.0 1.3 29 30-61 1-29 (44)
68 KOG1259|consensus 89.6 0.16 3.5E-06 47.4 1.3 42 5-48 306-347 (490)
69 PRK15370 E3 ubiquitin-protein 89.1 0.28 6.2E-06 52.3 2.9 40 6-48 199-238 (754)
70 PF04789 DUF621: Protein of un 88.7 4.3 9.3E-05 37.5 9.6 170 147-325 30-214 (305)
71 PRK15370 E3 ubiquitin-protein 88.5 0.42 9.2E-06 51.0 3.7 39 6-47 220-258 (754)
72 PHA03234 DNA packaging protein 88.1 0.16 3.4E-06 49.0 0.2 44 84-127 45-90 (338)
73 PF02175 7TM_GPCR_Srb: Serpent 87.6 13 0.00028 33.7 11.8 40 209-248 83-122 (236)
74 PRK15387 E3 ubiquitin-protein 87.6 0.31 6.7E-06 52.1 1.9 42 6-47 342-399 (788)
75 PRK15387 E3 ubiquitin-protein 85.5 0.64 1.4E-05 49.7 3.0 38 6-47 222-259 (788)
76 KOG0472|consensus 85.5 0.082 1.8E-06 51.1 -3.3 42 7-50 207-248 (565)
77 KOG0531|consensus 84.7 0.45 9.8E-06 47.2 1.4 46 6-52 95-140 (414)
78 KOG4220|consensus 83.0 0.68 1.5E-05 45.0 1.7 41 84-124 43-83 (503)
79 PHA02638 CC chemokine receptor 82.4 6.6 0.00014 39.1 8.5 40 84-124 111-150 (417)
80 smart00364 LRR_BAC Leucine-ric 81.1 0.87 1.9E-05 26.0 1.0 18 7-24 3-20 (26)
81 KOG1644|consensus 79.0 1.2 2.7E-05 39.3 1.8 43 6-48 64-106 (233)
82 PF13516 LRR_6: Leucine Rich r 78.2 1.1 2.3E-05 24.8 0.8 19 29-47 1-19 (24)
83 COG4886 Leucine-rich repeat (L 76.8 0.74 1.6E-05 45.1 -0.2 38 7-45 117-155 (394)
84 PHA02834 chemokine receptor-li 76.5 1.7 3.6E-05 41.5 2.2 40 84-124 41-80 (323)
85 PF00001 7tm_1: 7 transmembran 75.5 0.45 9.7E-06 42.5 -2.0 44 88-131 1-44 (257)
86 KOG4564|consensus 73.7 32 0.0007 34.6 10.3 133 154-290 167-304 (473)
87 KOG0532|consensus 73.0 0.9 1.9E-05 46.1 -0.7 39 6-46 189-227 (722)
88 TIGR00864 PCC polycystin catio 72.9 1.7 3.7E-05 51.8 1.4 32 12-43 1-32 (2740)
89 KOG0617|consensus 71.4 0.98 2.1E-05 38.9 -0.7 46 6-53 56-101 (264)
90 smart00368 LRR_RI Leucine rich 71.2 2.2 4.8E-05 24.7 1.0 15 30-44 2-16 (28)
91 COG4886 Leucine-rich repeat (L 71.2 2.6 5.6E-05 41.3 2.1 45 7-53 256-300 (394)
92 KOG0531|consensus 70.9 1.7 3.6E-05 43.2 0.6 43 6-50 118-160 (414)
93 KOG0618|consensus 70.6 0.83 1.8E-05 48.8 -1.6 49 5-53 358-406 (1081)
94 KOG1859|consensus 68.4 0.96 2.1E-05 47.3 -1.6 48 5-54 186-233 (1096)
95 PF01534 Frizzled: Frizzled/Sm 68.0 1.2E+02 0.0025 29.2 13.0 82 209-291 92-175 (328)
96 PF10318 7TM_GPCR_Srh: Serpent 66.4 58 0.0013 30.4 10.2 123 147-274 19-147 (302)
97 KOG3207|consensus 64.4 1.5 3.2E-05 43.1 -1.1 41 6-46 222-262 (505)
98 PHA03087 G protein-coupled che 64.4 7.9 0.00017 36.9 3.8 40 84-124 53-92 (335)
99 PHA03235 DNA packaging protein 64.1 2.7 5.9E-05 41.6 0.6 43 85-127 46-90 (409)
100 KOG2123|consensus 56.5 1.3 2.8E-05 41.1 -2.8 45 6-52 41-85 (388)
101 PF03125 Sre: C. elegans Sre G 56.2 83 0.0018 30.6 9.4 35 214-248 126-160 (365)
102 PLN03210 Resistant to P. syrin 55.0 8.9 0.00019 43.4 2.8 40 6-46 611-651 (1153)
103 KOG0532|consensus 49.7 9.3 0.0002 39.1 1.6 42 6-48 211-252 (722)
104 cd00116 LRR_RI Leucine-rich re 49.6 6.4 0.00014 36.9 0.5 44 6-50 165-213 (319)
105 KOG3207|consensus 46.7 9.2 0.0002 37.8 1.0 45 6-50 246-291 (505)
106 cd00116 LRR_RI Leucine-rich re 45.1 8.1 0.00018 36.2 0.4 47 7-53 52-104 (319)
107 PF10325 7TM_GPCR_Srz: Serpent 44.7 1.8E+02 0.0039 26.6 9.4 108 218-329 89-198 (267)
108 PLN03210 Resistant to P. syrin 39.5 39 0.00084 38.4 4.7 42 5-48 588-629 (1153)
109 KOG0473|consensus 33.3 3.3 7E-05 37.6 -4.0 40 7-47 43-82 (326)
110 KOG2739|consensus 33.2 25 0.00054 32.3 1.6 38 7-44 92-130 (260)
111 KOG1859|consensus 32.7 18 0.00038 38.4 0.6 42 5-47 208-249 (1096)
112 KOG2739|consensus 32.2 26 0.00056 32.2 1.5 41 6-46 65-107 (260)
113 PF10319 7TM_GPCR_Srj: Serpent 31.1 4.7E+02 0.01 24.9 13.4 108 147-255 20-133 (310)
114 PF13853 7tm_4: Olfactory rece 28.5 20 0.00042 29.8 0.1 23 305-327 65-87 (144)
115 KOG1909|consensus 28.4 28 0.0006 33.5 1.0 46 5-50 184-233 (382)
116 PF03821 Mtp: Golgi 4-transmem 27.0 4.7E+02 0.01 23.7 8.5 42 170-211 68-110 (233)
117 PRK15386 type III secretion pr 26.5 73 0.0016 31.7 3.6 39 5-47 51-90 (426)
118 COG5238 RNA1 Ran GTPase-activa 24.0 23 0.00051 33.0 -0.3 48 5-52 184-236 (388)
119 PF10320 7TM_GPCR_Srsx: Serpen 22.5 32 0.0007 31.6 0.3 45 85-129 4-48 (257)
120 PRK15386 type III secretion pr 22.0 52 0.0011 32.7 1.7 40 5-47 71-112 (426)
121 KOG2123|consensus 21.7 5.3 0.00011 37.2 -4.9 46 6-51 63-109 (388)
No 1
>KOG2087|consensus
Probab=100.00 E-value=8.5e-33 Score=255.37 Aligned_cols=207 Identities=40% Similarity=0.668 Sum_probs=191.4
Q ss_pred CCCccccCCCCCCCchhhhH-----H--------hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhh
Q psy11830 63 RPEQKLNPRPSAYNTYYNFT-----R--------LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129 (387)
Q Consensus 63 ~~~~~~~p~~~~~~~~~~~l-----~--------~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~ 129 (387)
..+..|.|+||+|+||++.+ | +|+.||.+|+..+..++.++++++|+|+|||+||++||+|+.+++.
T Consensus 3 ~~~~~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~ 82 (363)
T KOG2087|consen 3 PHVITCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIAS 82 (363)
T ss_pred CccceecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHH
Confidence 35678999999999998754 4 3799999999999999999999999999999999999999999999
Q ss_pred ccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCc
Q psy11830 130 KDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGY 209 (387)
Q Consensus 130 ~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~ 209 (387)
+|..++|+|.+|+++|+-| .
T Consensus 83 vD~~~~gey~~~ai~W~tg------------------------------------------------------------~ 102 (363)
T KOG2087|consen 83 VDAKTRGEYYKHAIDWQTG------------------------------------------------------------L 102 (363)
T ss_pred hhHHHHHHHHHHHHhhhhc------------------------------------------------------------C
Confidence 9999999999999999977 4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeecc
Q psy11830 210 GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPM 288 (387)
Q Consensus 210 ~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~ 288 (387)
.|++.||+..+++..|+++|+.+++||+++|++|++..+ ...|....+....|+.+++.+..|+++.+.|...+.|.|.
T Consensus 103 gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~~vClPL 182 (363)
T KOG2087|consen 103 GCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGASSVCLPL 182 (363)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcccceeeec
Confidence 899999999999999999999999999999999999988 6666699999999999999999999999999999999999
Q ss_pred CcCcccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 289 DTRHLGSK-IYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 289 ~~~~~~~~-~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
..++.... +|...+..+..+.+++|.++|++|+..+++...
T Consensus 183 ~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~ 224 (363)
T KOG2087|consen 183 HIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDL 224 (363)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC
Confidence 88887777 687888888899999999999999999988665
No 2
>KOG4219|consensus
Probab=99.97 E-value=2.4e-31 Score=248.13 Aligned_cols=226 Identities=22% Similarity=0.323 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
..+.++...++.++++ .||++|++++..+|++|+.+|+|++|||+||++++++..+....-..
T Consensus 35 ~~~wai~yg~l~~vAv--------------~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal--- 97 (423)
T KOG4219|consen 35 QALWAIAYGLLVFVAV--------------VGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL--- 97 (423)
T ss_pred HHHHHHHHHHHHHHHH--------------hcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH---
Confidence 3445555555555555 99999999999999999999999999999999999999888764433
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG 275 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~ 275 (387)
.++|.+| ..|++..|+...+..+|+++|++||+|||.||.||++.+ .++|++++.++++|++|++++ .|...
T Consensus 98 -----~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a-~P~~l 170 (423)
T KOG4219|consen 98 -----HQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR-PSRRSSKIIILLIWALALLLA-LPQLL 170 (423)
T ss_pred -----HhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC-CCCcceeehhHHHHHHHHHHh-cccee
Confidence 2489999 899999999999999999999999999999999999988 799999999999999999999 56554
Q ss_pred eccc----C----CceeeeccCcCc-----ccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeee
Q psy11830 276 ISSY----S----TTSICLPMDTRH-----LGSK----IYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITG 338 (387)
Q Consensus 276 ~~~~----~----~~~~C~~~~~~~-----~~~~----~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~ 338 (387)
..+. . ....|.-.+++. .... +..+.+++.+++|++++..+|..|.+.+|+.+..+..
T Consensus 171 ~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~----- 245 (423)
T KOG4219|consen 171 YSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQ----- 245 (423)
T ss_pred eeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccch-----
Confidence 3321 1 134554332222 1111 3344566778999999999999999999987652221
Q ss_pred eeeeccCCccccCCccccceeEEEEEeeeehhhhhhhhheeeeecc
Q psy11830 339 ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIY 384 (387)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~f~~cylpi~ 384 (387)
..++.+...+++++++++ ..+.+.|++||+|..
T Consensus 246 ----------~d~~~~~~kak~K~vkml---iiVV~~FaicWlPyh 278 (423)
T KOG4219|consen 246 ----------QDRKHEQLKAKKKVVKML---IIVVVIFAICWLPYH 278 (423)
T ss_pred ----------hchhhHHHHHHHHHHHHH---HHHHHHHHHhccChh
Confidence 112222222334444444 344577889999973
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.96 E-value=7.4e-29 Score=238.20 Aligned_cols=170 Identities=11% Similarity=0.158 Sum_probs=127.4
Q ss_pred hcccceeeee--eeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHH
Q psy11830 147 KGNAAVLAVT--LSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQ 223 (387)
Q Consensus 147 ~gN~lvi~vi--~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~ 223 (387)
+||++|++++ .+++++|+++|+|+.|||+||+++++..+|..... ...|++| ..||+.+++...+.+
T Consensus 48 ~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~----------~~~w~fG~~lCk~~~~~~~~~~~ 117 (338)
T PHA03234 48 PMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR----------EALFNFNQAFCQCVLFIYHASCS 117 (338)
T ss_pred hhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCccCchhHHHHHHHHHHHHHH
Confidence 9999999954 45667799999999999999999998777765421 2369999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheeccc--C-CceeeeccCcCcccchhhhH
Q psy11830 224 LSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSY--S-TTSICLPMDTRHLGSKIYVH 300 (387)
Q Consensus 224 ~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~--~-~~~~C~~~~~~~~~~~~~~~ 300 (387)
+|+++|++||+|||+||+||.+++. ++++....++++|+.+++.++|++...... + ....|...++.+.....+..
T Consensus 118 ~Si~~L~~ISiDRY~aIv~p~~~~~-~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 196 (338)
T PHA03234 118 YSICMLAIIATIRYKTLHRRKKNDK-KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLFIA 196 (338)
T ss_pred HHHHHHHHHHHHhHeeeechhhhhh-hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHHHHH
Confidence 9999999999999999999988653 334444556667999999886665543222 2 22468765543222122211
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11830 301 ----TLLLFSSLVFAMICVCYFQIYSSLGNV 327 (387)
Q Consensus 301 ----~~~~~~~iPl~ii~~~Y~~I~~~lr~~ 327 (387)
..++.+++|+++|++||.+|.++++++
T Consensus 197 ~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~ 227 (338)
T PHA03234 197 IKIVFCFIWGIFPTMIFSFFYVIFCKALHAL 227 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122345899999999999999998763
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=219.70 Aligned_cols=186 Identities=19% Similarity=0.273 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
....+...++.+.|+ +||+++++++.+++++ ++.|+++.|||+||++. ....|..+...
T Consensus 29 ~~~~~~~~li~v~~~--------------~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~----- 87 (323)
T PHA02834 29 YFVIVFYILLFIFGL--------------IGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND----- 87 (323)
T ss_pred hhHHHHHHHHHHHHH--------------hhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-----
Confidence 445555666666776 9999999988776554 57899999999999986 44566554221
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhee
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGI 276 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~ 276 (387)
.++|.+| ..|++.+++...+..+|++++++||+|||.+|++|+++++.+.+++...++++|+.+++.++||..++
T Consensus 88 ----~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~ 163 (323)
T PHA02834 88 ----LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLY 163 (323)
T ss_pred ----cCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1259999 89999999999999999999999999999999999987555567777888999999999997776544
Q ss_pred ccc--CCceeeeccCcCcccch--hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830 277 SSY--STTSICLPMDTRHLGSK--IYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVL 328 (387)
Q Consensus 277 ~~~--~~~~~C~~~~~~~~~~~--~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~ 328 (387)
... ++...|........... .+.. ..+..+++|+++|++||.+|++++|+++
T Consensus 164 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~ 220 (323)
T PHA02834 164 YVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCK 220 (323)
T ss_pred HhccCCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 322 23346863222111111 1111 1245568999999999999999998753
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.93 E-value=1.5e-25 Score=220.10 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeee-ccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11830 114 AMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLS-RTSE-KSVPRFLISHLAMADLCMAFYLLLLAIKD 191 (387)
Q Consensus 114 ~~ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~-~~~l-~t~~~~~i~nLavaDll~~~~~~~~~~~~ 191 (387)
+.+.....++..+++++|+ +||++|++++.+ +|.+ ++.+++|+.|||+||+++. +.+|..+..
T Consensus 29 ~~~~~~~~~~~~li~vvGi--------------igN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~ 93 (409)
T PHA03235 29 SAARTTETFINLLIISVGG--------------PLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS 93 (409)
T ss_pred hhhHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3345567777777777887 999999987543 3332 4567899999999999875 455555421
Q ss_pred hhccceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhh
Q psy11830 192 LQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGA 270 (387)
Q Consensus 192 ~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~ 270 (387)
. ...|..| ..|++.+++...+..+|++++++||+|||++|++|.++++.+++++..+++++|+.++++++
T Consensus 94 ---~------~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~ 164 (409)
T PHA03235 94 ---N------QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSG 164 (409)
T ss_pred ---c------CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHH
Confidence 0 1124445 78999999999999999999999999999999999866556788999999999999999996
Q ss_pred hhhhee-----ccc----CCceeeeccCcCcccc---hhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 271 LPMFGI-----SSY----STTSICLPMDTRHLGS---KIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 271 ~p~~~~-----~~~----~~~~~C~~~~~~~~~~---~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
|+.+.. +.+ .+...|...+..+... ..|.+. .++.+++|+++|++||.+|++++|++.+
T Consensus 165 P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~ 236 (409)
T PHA03235 165 PAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY 236 (409)
T ss_pred HHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 654321 111 1244687554433221 123333 3455799999999999999999987643
No 6
>KOG4220|consensus
Probab=99.93 E-value=3.7e-26 Score=213.01 Aligned_cols=188 Identities=19% Similarity=0.214 Sum_probs=155.9
Q ss_pred HHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy11830 120 MAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYF 199 (387)
Q Consensus 120 ~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~ 199 (387)
+++...+++.+++ .||++|++.+.-+|+++|..|+|+.+||+||+..|++.+|+.....+.
T Consensus 33 i~~v~~~lsLVTv--------------~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lm----- 93 (503)
T KOG4220|consen 33 IVVVTGSLSLVTV--------------VGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLM----- 93 (503)
T ss_pred eehhhhHHHHHhh--------------hccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHH-----
Confidence 4555666777776 999999999999999999999999999999999999999988755443
Q ss_pred ccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh-ee
Q psy11830 200 NYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF-GI 276 (387)
Q Consensus 200 ~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~-~~ 276 (387)
+.|++| .+|.+...+.++.+.+|++.|..||+|||+.|.+|+.|+. +|.+|+..+|++.|++|+++- +|.+ .|
T Consensus 94 ---g~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLW-aPaIl~W 169 (503)
T KOG4220|consen 94 ---GYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLW-APAILFW 169 (503)
T ss_pred ---cccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 379999 9999999999999999999999999999999999999999 999999999999999999998 6655 44
Q ss_pred cccC-----CceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830 277 SSYS-----TTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADL 332 (387)
Q Consensus 277 ~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~ 332 (387)
.... ..+.|.-.+-+.+. ......+..|-+|..+|.+.|++|++..+++.+...
T Consensus 170 qyivGkrTv~~~eC~iQFlsnp~--iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~ 228 (503)
T KOG4220|consen 170 QYIVGKRTVPDGECYIQFLSNPA--ITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELA 228 (503)
T ss_pred HhheeeeecCCCceEEEeecCce--eehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3322 35568644333211 112223556789999999999999999998877554
No 7
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=214.66 Aligned_cols=187 Identities=18% Similarity=0.347 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11830 116 ADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST 195 (387)
Q Consensus 116 ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~ 195 (387)
+.++..+|.+ +.+.|+ +||++|++++. +|++|+++|+++.|||++|++.++. .|..+...
T Consensus 98 ~~~l~~~y~l-vfvlgl--------------iGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~-lPf~i~~~--- 157 (417)
T PHA02638 98 SEYIKIFYII-IFILGL--------------FGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVID-FPFIIYNE--- 157 (417)
T ss_pred hhHHHHHHHH-HHHHHH--------------HHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHH---
Confidence 3455555554 555565 99999997765 4788999999999999999988654 44444221
Q ss_pred ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830 196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM 273 (387)
Q Consensus 196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~ 273 (387)
.++|.+| ..|++..++...+..+|+++++++++|||+||+||.++++ .+++++...++++|+.++++++|++
T Consensus 158 ------~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~ 231 (417)
T PHA02638 158 ------FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAY 231 (417)
T ss_pred ------hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHH
Confidence 1369999 8999999999999999999999999999999999999888 7888888899999999999998887
Q ss_pred heeccc---------C---CceeeeccCcCcccc-----hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830 274 FGISSY---------S---TTSICLPMDTRHLGS-----KIYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVL 328 (387)
Q Consensus 274 ~~~~~~---------~---~~~~C~~~~~~~~~~-----~~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~ 328 (387)
+..+.. + ....|...++.+... ..+.. ..++.+++|++++++||.+|++++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~ 304 (417)
T PHA02638 232 FIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK 304 (417)
T ss_pred HHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 643321 1 134686544322211 11111 2344568999999999999999997643
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.90 E-value=3.6e-25 Score=202.37 Aligned_cols=177 Identities=24% Similarity=0.397 Sum_probs=148.6
Q ss_pred cccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHHH
Q psy11830 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLSI 226 (387)
Q Consensus 148 gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si 226 (387)
||++++.++.++|++|++.++++.|||++|++.++..+|........ ++|..| ..|++..++...+..+|.
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--------~~~~~~~~~C~~~~~~~~~~~~~s~ 72 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--------DDWIFSSFLCRIFGFLFYFSSFSSI 72 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------SSCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--------ccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999998888755442 468888 899999999999999999
Q ss_pred HHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecc--cC--CceeeeccCcCcccchhhhHH
Q psy11830 227 FTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISS--YS--TTSICLPMDTRHLGSKIYVHT 301 (387)
Q Consensus 227 ~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~--~~--~~~~C~~~~~~~~~~~~~~~~ 301 (387)
++++++|+|||++|++|.++++ .+++++...++.+|+.+++.++++...... .. ....|............+...
T Consensus 73 ~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 152 (257)
T PF00001_consen 73 FSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYF 152 (257)
T ss_dssp HHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 999999999999999999999888665332 11 246798665544323334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830 302 LLLFSSLVFAMICVCYFQIYSSLGNVLTADL 332 (387)
Q Consensus 302 ~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~ 332 (387)
..+.+++|++++.++|.+|++.+|+++++..
T Consensus 153 ~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~ 183 (257)
T PF00001_consen 153 FIVFFILPLIIILICYIRILRKLRRQRKRIK 183 (257)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHCTC
T ss_pred cccccccceeeeeeecccccccccccccccc
Confidence 5666789999999999999999999888543
No 9
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.89 E-value=2.1e-22 Score=193.89 Aligned_cols=188 Identities=18% Similarity=0.255 Sum_probs=145.5
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
....++..++++.|+ +||+++++++.++ ++|++.|+++.|||++|++.++..++.. ...
T Consensus 41 ~~~~~~~~~i~~~gl--------------~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~-~~~----- 99 (335)
T PHA03087 41 TILIVVYSTIFFFGL--------------VGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQI-YYY----- 99 (335)
T ss_pred hHHHHHHHHHHHHHH--------------HhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHH-HHH-----
Confidence 445666666777777 9999999999888 8899999999999999998877644432 221
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG 275 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~ 275 (387)
...+|.+| ..|++..++...+..+|++++++||+|||++|++|+++++ .+++++..+++++|+.+++.+.|+...
T Consensus 100 ---~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~ 176 (335)
T PHA03087 100 ---ILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFV 176 (335)
T ss_pred ---hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhhe
Confidence 12368888 8999999999999999999999999999999999999988 999999999999999999988666554
Q ss_pred ecc--cCCceeeeccCcCcccc-hhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 276 ISS--YSTTSICLPMDTRHLGS-KIYVH--TLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 276 ~~~--~~~~~~C~~~~~~~~~~-~~~~~--~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
+.. ..+...|.+.++..... ..+.. ...+.+++|.++++++|.+|.++++++++
T Consensus 177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~ 235 (335)
T PHA03087 177 YTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK 235 (335)
T ss_pred eeeeccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 432 23345676555422221 22221 12345689999999999999998887643
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.37 E-value=2.9e-12 Score=118.71 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=114.8
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLS 225 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~S 225 (387)
+||+.++.++.++|++|+|.++++..+|++|++.+....|.....+. + -... ..|-.+.+...++....
T Consensus 6 ~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~--~--------~~i~~~~Cf~~~~~~~f~~~~q 75 (257)
T PF10320_consen 6 FGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR--D--------HQITRSECFWQIFFYIFFQCAQ 75 (257)
T ss_pred EccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh--h--------eeccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888877763321 1 1112 57988888888999999
Q ss_pred HHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeeccCcC-cccchhhhHHHH
Q psy11830 226 IFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTR-HLGSKIYVHTLL 303 (387)
Q Consensus 226 i~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~ 303 (387)
...+.+|++||++||+.|.+|++ .+++..........+.+.......+ ...+.+....|.+...- +.....+....
T Consensus 76 s~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~C~pp~a~~~~~~~~~~~~~- 153 (257)
T PF10320_consen 76 SVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGF-LYRDDETIVICNPPLAFHGTASQIWSYSN- 153 (257)
T ss_pred HHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhhee-EecCCcccccCCCccccCccHHHHHHHHH-
Confidence 99999999999999999999999 7776555555555555554432222 22223345678754322 22222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 304 LFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 304 ~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
++.-+++++.|...+...+++++
T Consensus 154 ---~~inv~tvivY~i~~~~~~~k~~ 176 (257)
T PF10320_consen 154 ---IIINVITVIVYIITIIIFKRKSR 176 (257)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcc
Confidence 22223345566666666666555
No 11
>KOG2087|consensus
Probab=99.29 E-value=1.6e-12 Score=121.24 Aligned_cols=212 Identities=27% Similarity=0.343 Sum_probs=144.8
Q ss_pred ccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHH
Q psy11830 98 SRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMAD 177 (387)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaD 177 (387)
..|+|++ ..+.-|..-.+....++..|+++..++ .||.+|+..+...+.+.+++.+++.|||+||
T Consensus 6 ~~C~P~~-da~~pcEdllg~~~lRi~vW~i~~lAi--------------~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad 70 (363)
T KOG2087|consen 6 ITCKPSP-DAFNPCEDLLGYWILRISVWVIALLAI--------------VGNLLVLLTRFTSRYELNSHRFLICNLAFAD 70 (363)
T ss_pred ceecCCC-CCCCcHHHhhccceeeehhhhhhhHHh--------------ccCeeeeeeeeehhhhccchHHHHHHHHHHH
Confidence 3455544 233444444456677888999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhh
Q psy11830 178 LCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYF 257 (387)
Q Consensus 178 ll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~ 257 (387)
+++|++...+..+|..++|+|++++..| +....+.-..+++..|-| -....+
T Consensus 71 ~~mGiYl~~ia~vD~~~~gey~~~ai~W------------~tg~gC~~aGflavFASE----------------lSv~~L 122 (363)
T KOG2087|consen 71 LLMGIYLGLIASVDAKTRGEYYKHAIDW------------QTGLGCPVAGFLAVFASE----------------LSVFLL 122 (363)
T ss_pred HHcchHHHHHHHhhHHHHHHHHHHHHhh------------hhcCCCchHHHHHHHHHH----------------HHHHHH
Confidence 9999999999999999999999998888 455555566777777777 111111
Q ss_pred hHHHHHHHHHHhhhhhheecccCCceeeeccCcCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeeee
Q psy11830 258 ILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKI-YVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLI 336 (387)
Q Consensus 258 i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~~~~~ 336 (387)
...+|--..... - +...+...... .....+..++..++.- ..+.
T Consensus 123 T~itlEr~l~i~-~---------------p~~~~~~~~lr~~~~ill~~wl~~~l~A-------------------~~Pl 167 (363)
T KOG2087|consen 123 TLITLERWLSIT-Y---------------PFRLDRKAKLRPLVLILLLGWLFAFLMA-------------------LLPL 167 (363)
T ss_pred HHHHHHHHhhee-c---------------cccCCCcccccHHHHHHHHHHHHHHHHH-------------------hccc
Confidence 111221111111 1 11111111111 1222222222222221 1155
Q ss_pred eeeeeeccCCccccCCcccccee-EEEEEeeeehhhhhhhhheeeeecccCC
Q psy11830 337 TGISSYSTTSICLPMDTRHLGSK-IYVHTLLLFSSLVFAMICVCYFQIYSSL 387 (387)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~f~~f~~cylpi~~~~ 387 (387)
.+.+.|++++.|.|.+.++.-++ -+....+.+|.+.|+++++||.-||+++
T Consensus 168 ~g~s~Y~~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l 219 (363)
T KOG2087|consen 168 FGISSYGASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSL 219 (363)
T ss_pred cCCCCCcccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 66799999999999988887666 3666677999999999999999998864
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.99 E-value=3e-09 Score=99.53 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=120.2
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSI 226 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si 226 (387)
+.|.+++..+.+.+++|++-+.+-.+.|++|.+.+.............+... ..+|. .=.+.+.........+.
T Consensus 9 ~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~---~~~~~---~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 9 ILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISF---LPSSL---NSIIFGFIGMFCYFIGP 82 (274)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CchHH---HHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999886554443333222111 11111 12334677778888899
Q ss_pred HHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecc---cCCceeeeccCcCcccchhhhH-H
Q psy11830 227 FTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISS---YSTTSICLPMDTRHLGSKIYVH-T 301 (387)
Q Consensus 227 ~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~---~~~~~~C~~~~~~~~~~~~~~~-~ 301 (387)
.+-.+||++|+.||..|.+|++ .+.+.+..++++.|+.++....++....+. ++....-+.. +.++.-..+.. .
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~-~~~~~C~~~~~~~ 161 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY-PTDPPCGNYSWYF 161 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec-CCCCccchhhhHH
Confidence 9999999999999999999999 999999999999999998766455442221 1111111111 11111112222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 302 LLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 302 ~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
......+-.+++..++..++.++++.+++
T Consensus 162 ~~~~~~~~~~~~~~lni~t~ikl~~~~~~ 190 (274)
T PF10328_consen 162 DFYKNFILVIISNILNIITFIKLRKFRKK 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22233455667777888888888877664
No 13
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.81 E-value=1.6e-08 Score=96.65 Aligned_cols=186 Identities=16% Similarity=0.065 Sum_probs=124.6
Q ss_pred hcccceeeeeeeccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-eeeccccCcccC-ccchhhhHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKS-VPRFLISHLAMADLCMAFYLLLLAIKDLQSTE-VYFNYAYDWQKG-YGCKVAGFVTVFASQ 223 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t-~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~-~~~~~~~~w~~g-~~C~~~~~~~~~~~~ 223 (387)
++|++-+.++. +|++|+ +.|.++..+|++|++..+...+.......... ...-....+... ....+...+...+..
T Consensus 12 ~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~ 90 (318)
T PF10324_consen 12 FINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRR 90 (318)
T ss_pred HHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 88988887774 566665 88999999999999999998887775543221 000000011111 234556678888999
Q ss_pred HHHHHHHHHHHHHHhheecccccc--c-cccchhhhhhHHHHHHHHHHhhhhhheeccc------CCceeeeccC---cC
Q psy11830 224 LSIFTLGMITLERWYSIKRALYAN--K-LTIHRTTYFILVGYVYASIMGALPMFGISSY------STTSICLPMD---TR 291 (387)
Q Consensus 224 ~Si~~L~~isidRy~aI~~P~~~~--~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~------~~~~~C~~~~---~~ 291 (387)
.|.|..++||+.|++++.+|++.+ + .+++.+...+.++++.+.++.++.++...-. .+...|.... ..
T Consensus 91 ~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~ 170 (318)
T PF10324_consen 91 ISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTF 170 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccc
Confidence 999999999999999999998875 4 6778888888888888888885555433211 1344586211 11
Q ss_pred ccc-----------c----hhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcccee
Q psy11830 292 HLG-----------S----KIYVHTLLLF-SSLVFAMICVCYFQIYSSLGNVLTADLL 333 (387)
Q Consensus 292 ~~~-----------~----~~~~~~~~~~-~~iPl~ii~~~Y~~I~~~lr~~~~~~~~ 333 (387)
+.. + ..+...-.+. -++|.++..+....+.+.+||.+++++.
T Consensus 171 ~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~ 228 (318)
T PF10324_consen 171 PRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKK 228 (318)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence 100 0 0111111223 4799999999999999999988876653
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=3.9e-08 Score=69.90 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=45.8
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+|+.||+..|+++++|+.|+|++|.|+.+++.+|.++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l 48 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNL 48 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCC
Confidence 68999999999999999999999999999999999999999999887
No 15
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.55 E-value=1.7e-06 Score=76.81 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=97.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11830 160 TSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYS 239 (387)
Q Consensus 160 ~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~a 239 (387)
+++++-.+-++.||.+||++.++..+.........+ +....+..|..+|++......++-+...+||+.-|+.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~-------~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~ 102 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARG-------GIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLI 102 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566999999999999988665444322211 1222237999999999999999999999999999999
Q ss_pred eecccc------ccc--c--ccchhhhhhHHHHHHHHHHhhhhhheecccCC-ceeeeccCcCcccchhhhHHHHHHHHH
Q psy11830 240 IKRALY------ANK--L--TIHRTTYFILVGYVYASIMGALPMFGISSYST-TSICLPMDTRHLGSKIYVHTLLLFSSL 308 (387)
Q Consensus 240 I~~P~~------~~~--~--t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~i 308 (387)
|.+|-. ..+ . .+..+.....+.|++...++..+ .+.+.|.+ ...|+-.......+ .....+--++
T Consensus 103 v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~-~~~~~Y~~~g~WCWi~~~~~~~R---l~l~y~~~~~ 178 (201)
T PF11710_consen 103 VFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG-LGGPGYGPAGAWCWIPSRYEWYR---LWLHYIWRFI 178 (201)
T ss_pred HhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhc-cccCcccccCcEEEECCCcHHHH---HHHHHHHHHH
Confidence 999922 111 1 11222233335555544444332 11222333 55787332222111 1122222345
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q psy11830 309 VFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 309 Pl~ii~~~Y~~I~~~lr~~~~ 329 (387)
-.+.+++.|..|+..+||+.+
T Consensus 179 ~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 179 IIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 667788899999999999876
No 16
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.45 E-value=1.3e-07 Score=88.90 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccceeeccccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhe
Q psy11830 162 EKSVPRFLISHLAMADLCMAFYLLLLAIKDLQ-STEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSI 240 (387)
Q Consensus 162 l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~-~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI 240 (387)
.+++-+-++.+-++||++..+........... ...+.+...++|. -++...........-....+.+|+.||.||
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~y~~~~~~~~gi~lls~nR~~ai 104 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYY----AAIYYNIAYYFLYIQCIGIVLLSLNRYLAI 104 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchh----HHHHHHHHHHHHHHHHHhHHHHHHhhhheE
Confidence 57899999999999999998875544432222 0111111112221 244444555566667788899999999999
Q ss_pred eccc-cccc-cccchhhhhhHHHHHHHHHHhhhhhheeccc--CCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHH
Q psy11830 241 KRAL-YANK-LTIHRTTYFILVGYVYASIMGALPMFGISSY--STTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVC 316 (387)
Q Consensus 241 ~~P~-~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~ 316 (387)
++|. ++++ .++.+...++++-|+.+.+.+ .|.+...+. +.... .+...+................+-.+..+++
T Consensus 105 ~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~-~~~~~~~~~~f~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~cv~~iv~ 182 (283)
T PF10323_consen 105 CFPTSRHTKFWQPAKIWIIILIQWIPPLLIS-LPFFFDTDFYFDNEEN-MSLFVDPEFIQRNFLIAFIFVSVTCVICIVC 182 (283)
T ss_pred EeecHHHhhhccccchhheeeeeehhhhhhe-eeeeccCceeeecccc-eeeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7777 889999999999999999988 554433322 11111 2111111111222222233345667788999
Q ss_pred HHHHHHHHhhhhc
Q psy11830 317 YFQIYSSLGNVLT 329 (387)
Q Consensus 317 Y~~I~~~lr~~~~ 329 (387)
|..++..+||+.+
T Consensus 183 Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 183 YGIIFIFIRKRNK 195 (283)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999997754
No 17
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.25 E-value=7.4e-06 Score=77.26 Aligned_cols=127 Identities=15% Similarity=0.205 Sum_probs=96.5
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSI 226 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si 226 (387)
+|-++++..+...|+.|++.+-++.-++++|++..+......... +.-..+..|++++++...+..++.
T Consensus 22 lGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~-----------~~~~~s~lC~~Qafliq~f~~as~ 90 (303)
T PF05462_consen 22 LGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSP-----------SAGENSFLCQFQAFLIQFFMLASF 90 (303)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCCCCcchhhHhHHHHHhhHHHH
Confidence 888899999999999999999999999999999876654433210 011113689999999999999999
Q ss_pred HHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccC-Cceeeecc
Q psy11830 227 FTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYS-TTSICLPM 288 (387)
Q Consensus 227 ~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~-~~~~C~~~ 288 (387)
+-.++||++=|..+++.... .+|.-.....++|.++++.+..|+..- .++ ....|+-.
T Consensus 91 lWt~~iA~nly~~~~~~~~~---~~k~e~~Y~l~~wGiPli~a~i~l~~~-~~g~~G~WCWI~ 149 (303)
T PF05462_consen 91 LWTLCIAFNLYLTFVKRYDE---LEKLEKYYHLVCWGIPLIPAVIPLIGN-DYGPAGNWCWIK 149 (303)
T ss_pred HHHHHHHHHhhheeEEcCcc---HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCCceeec
Confidence 88899999999999875432 235556678889999999888877543 333 34578743
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=9e-07 Score=58.31 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
.+|++|++++|+|+.||+ .++++++|+.|||++|+|+.+++-
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcCC
Confidence 378999999999999986 478999999999999999988753
No 19
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.17 E-value=1.4e-05 Score=75.80 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=111.2
Q ss_pred hcccceeeeeee---ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHH
Q psy11830 147 KGNAAVLAVTLS---RTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQ 223 (387)
Q Consensus 147 ~gN~lvi~vi~~---~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~ 223 (387)
+||++++.+-.. +++.-+|.+..+.+||++.++................. .+..+..++...++..+...
T Consensus 22 ~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~ 94 (303)
T PF05296_consen 22 LGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPN-------IYFSENVYKIIDFLWMFSNS 94 (303)
T ss_pred HHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch-------hhhhhhHHHHHHHHHHHHhH
Confidence 999998877653 34444799999999999999988776655554443221 12222568888888888999
Q ss_pred HHHHHHHHHHHHHHhheeccccccc-cccc----hhhhhhHHHHHHHH--HHhhhhhheecccC--Cceeeecc---CcC
Q psy11830 224 LSIFTLGMITLERWYSIKRALYANK-LTIH----RTTYFILVGYVYAS--IMGALPMFGISSYS--TTSICLPM---DTR 291 (387)
Q Consensus 224 ~Si~~L~~isidRy~aI~~P~~~~~-~t~~----~~~~~i~~iWi~s~--~~~~~p~~~~~~~~--~~~~C~~~---~~~ 291 (387)
.|.|..+.+++-=++.|+..-+.-- .=++ ....++...++.++ ... .|........ ....+.+. ...
T Consensus 95 ~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~-~~~~~~~~~~~~~~~~~~N~t~~~~~ 173 (303)
T PF05296_consen 95 SSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLS-IPLFIDNHINNNNTNNSRNSTSNFQE 173 (303)
T ss_pred HHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhheeeeeccccccCCCcceEEeec
Confidence 9999999999999999987654322 1112 22234455566666 333 2322211111 11111111 111
Q ss_pred cccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830 292 HLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTADL 332 (387)
Q Consensus 292 ~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~ 332 (387)
+.....+... .....++|++++..+-..+...++||.|+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~ 215 (303)
T PF05296_consen 174 SKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQ 215 (303)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112222222 2355689999999999999999999999765
No 20
>KOG4237|consensus
Probab=98.11 E-value=8.7e-07 Score=83.90 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=55.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc-CCCCccccC-CCCCCCch
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK-IRPEQKLNP-RPSAYNTY 78 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~-~~~~~~~~p-~~~~~~~~ 78 (387)
.+.++++|+.|+|++||+..|+++++|+.|||++|+|+.|.+.+|.|+ ..+.++ ...+.+... ..+.|..-
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL--~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL--ASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh--HhhhHHHhhcCCchhhhhhhHhhhH
Confidence 356899999999999999999999999999999999999999999998 333322 222233333 45666663
No 21
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.88 E-value=0.00013 Score=67.35 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=103.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy11830 161 SEKSVPRFLISHLAMADLCMAFY-LLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWY 238 (387)
Q Consensus 161 ~l~t~~~~~i~nLavaDll~~~~-~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~ 238 (387)
++.+|.+..+.+||+|+.++.+. .+|.... .... + .++ .+||+..|+.-++-..|+.+.+.+|+-.-+
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~--------~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAI 75 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGW--------K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAI 75 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhc--------c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhE
Confidence 45589999999999999999876 3443321 1100 1 134 889999999999999999999999997766
Q ss_pred heeccccc---cc-cccchhhhhhHHHHHHHHHHhhh-hhh--eecccC------CceeeeccCcCcccchhhhHHHHHH
Q psy11830 239 SIKRALYA---NK-LTIHRTTYFILVGYVYASIMGAL-PMF--GISSYS------TTSICLPMDTRHLGSKIYVHTLLLF 305 (387)
Q Consensus 239 aI~~P~~~---~~-~t~~~~~~~i~~iWi~s~~~~~~-p~~--~~~~~~------~~~~C~~~~~~~~~~~~~~~~~~~~ 305 (387)
.|.-.-.. -+ ..++.....+...|++..++... +.. +..+.. ....|.....+......+.+...+-
T Consensus 76 tISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~ 155 (265)
T PF03402_consen 76 TISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFR 155 (265)
T ss_pred EEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhh
Confidence 66533221 12 45566677788889988776532 111 111111 1235753322222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830 306 SSLVFAMICVCYFQIYSSLGNVLTADL 332 (387)
Q Consensus 306 ~~iPl~ii~~~Y~~I~~~lr~~~~~~~ 332 (387)
-++.+.+|+.+-+.+...+.||++|.+
T Consensus 156 D~~fvgLM~~aSgyMV~~L~RH~q~Vq 182 (265)
T PF03402_consen 156 DVLFVGLMIWASGYMVFLLYRHHQQVQ 182 (265)
T ss_pred HHHHHHHHHhhhhhheeeeeecccccc
Confidence 367778888888899999999988543
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.76 E-value=2.1e-05 Score=55.68 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=35.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNI 42 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i 42 (387)
.+|++|++++|+|+.+|+..|.++++|+.|+|++|+|
T Consensus 25 ~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 25 PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6899999999999999999999999999999999986
No 23
>KOG4194|consensus
Probab=97.44 E-value=1.9e-05 Score=78.44 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCc---cc-cCCCCCCCchhh
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQ---KL-NPRPSAYNTYYN 80 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~---~~-~p~~~~~~~~~~ 80 (387)
-.+|.+|||+.|+|+.+|+..|..|..|++|+|+.|.|.++.+.+|.++ ++++.+..... .| ++...+|++-..
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l--ssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL--SSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh--hhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 3689999999999999999999999999999999999999999999998 55554432222 23 447777777333
Q ss_pred hHHhhhccCe
Q psy11830 81 FTRLIFPGNA 90 (387)
Q Consensus 81 ~l~~~~~gn~ 90 (387)
.-++.+.||-
T Consensus 394 LrkL~l~gNq 403 (873)
T KOG4194|consen 394 LRKLRLTGNQ 403 (873)
T ss_pred hhheeecCce
Confidence 3233344443
No 24
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.38 E-value=0.0064 Score=58.30 Aligned_cols=121 Identities=14% Similarity=0.010 Sum_probs=78.4
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLS 225 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~S 225 (387)
..++..++...+++..|.-..+.+....++.++.++........+....- ....+-+...+ .-|-.......++...+
T Consensus 32 ~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~-~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~ 110 (324)
T PF10292_consen 32 PVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYF-FPDDPCDMIPSTYRCFILRIPYNFGLFLV 110 (324)
T ss_pred HHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCcccccchhHHHHHHHHHHHHHHHH
Confidence 44444444444555567777788888888888877665544443332110 00222234444 67888888889999999
Q ss_pred HHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHH
Q psy11830 226 IFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM 268 (387)
Q Consensus 226 i~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~ 268 (387)
..+..++++||++|-++.-+|.+.++.-...+..+-|+++...
T Consensus 111 ~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~ 153 (324)
T PF10292_consen 111 SFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLI 153 (324)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988743333344444445555443
No 25
>KOG4237|consensus
Probab=97.35 E-value=3.4e-05 Score=73.38 Aligned_cols=83 Identities=14% Similarity=0.316 Sum_probs=60.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhhHHh
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFTRL 84 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l~~ 84 (387)
.+|+.|++++|+|+.|.++.|.++.++++|+|..|+|..+++..|.++ +.++-+..-+.+.+- .|.+|++....-++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l--s~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGL--SGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcc--ccceeeeecCCeeEEEecccccccceeeee
Confidence 468999999999999999999999999999999999999999999998 555544433322222 45666664433333
Q ss_pred hhccCe
Q psy11830 85 IFPGNA 90 (387)
Q Consensus 85 ~~~gn~ 90 (387)
-+++|-
T Consensus 352 ~l~~Np 357 (498)
T KOG4237|consen 352 NLLSNP 357 (498)
T ss_pred ehccCc
Confidence 333443
No 26
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.34 E-value=0.0021 Score=61.14 Aligned_cols=179 Identities=14% Similarity=0.140 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhhccc
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL-LLLAIKDLQSTE 196 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~-~~~~~~~~~~~~ 196 (387)
...|+|.++.++.-. +-.+..+.++.+++..|++.+-.+.-||+.|++..... +..+... .
T Consensus 33 p~~G~~~~~~g~~~~--------------~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~-i--- 94 (313)
T PF10321_consen 33 PILGIYFLIFGIIII--------------ILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILA-I--- 94 (313)
T ss_pred cchhHHHHHHHHHHH--------------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHH-h---
Confidence 446666666655543 55666666777777778899999999999999988664 2222211 1
Q ss_pred eeeccccCcccC-ccchh------hhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHH--H-H
Q psy11830 197 VYFNYAYDWQKG-YGCKV------AGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYV--Y-A 265 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~------~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi--~-s 265 (387)
.| ..|+. .|.+...+..++...-..++++|..-+..|..... ...+++...+.+..+ . +
T Consensus 95 ----------~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~ 164 (313)
T PF10321_consen 95 ----------FGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYF 164 (313)
T ss_pred ----------cCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHH
Confidence 12 33433 34555667778888889999999999999987776 666665554443332 2 3
Q ss_pred HHHhhhhhheecccCCceeeeccCc---Ccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 266 SIMGALPMFGISSYSTTSICLPMDT---RHLGSKIYV-HTLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 266 ~~~~~~p~~~~~~~~~~~~C~~~~~---~~~~~~~~~-~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
..+. +|...-.++ .++..++ ++.....|. .....-.++-.+.+..+|+.+...++++.+
T Consensus 165 ~~fT-~pv~Fns~~----~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~ 227 (313)
T PF10321_consen 165 SFFT-PPVLFNSEY----MSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSK 227 (313)
T ss_pred HHHc-CcccCCCCc----ceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3332 554422221 1221111 111222232 233333466677788899999888888765
No 27
>KOG4194|consensus
Probab=97.14 E-value=0.00014 Score=72.41 Aligned_cols=48 Identities=35% Similarity=0.534 Sum_probs=44.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
|+|..|+|++|+|..+|...|++|++|+.|+|--|+|+.++..+|.|+
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 588999999999999999999999999999999999999999999887
No 28
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.83 E-value=0.00049 Score=62.93 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCccc---CccchhhhHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK---GYGCKVAGFVTVFASQ 223 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~---g~~C~~~~~~~~~~~~ 223 (387)
++-++.+......|+.|+..+....||++++++..+......... ..... +..|+..+.+...+..
T Consensus 16 ~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~-----------~~~~~~~~~~~C~~~a~~~hy~~l 84 (242)
T PF00002_consen 16 ICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQT-----------FSPISTTNHCLCRAIAILLHYFFL 84 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhc-----------cccccccccccchhhhhHhHHHHH
Confidence 555555666666677888778888999999998776543321100 01111 1259999999999999
Q ss_pred HHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCCceeee
Q psy11830 224 LSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICL 286 (387)
Q Consensus 224 ~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~ 286 (387)
++..-+.+++++=|..++++... .+++........|..+++.............+...|+
T Consensus 85 a~f~Wm~~~~~~l~~~~~~~~~~---~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CW 144 (242)
T PF00002_consen 85 ASFFWMLVEAFYLYRLLVKVFNS---SRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCW 144 (242)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhheeEEEeecc---cchhhheeeeeeecCcceeeeeeeeeccccccccccc
Confidence 99999999999999999887332 3456666777889888777644444332222334575
No 29
>KOG4219|consensus
Probab=96.73 E-value=0.0016 Score=62.37 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=42.5
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK 130 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~ 130 (387)
+|+.||.+|+++.+..++-+++.+..+.|||+||.+|+++-...-..
T Consensus 48 vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~ 94 (423)
T KOG4219|consen 48 VAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQ 94 (423)
T ss_pred HHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 58999999999998888999999999999999999999998776554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.44 E-value=0.0011 Score=57.61 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=11.0
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
+|..|++++|+|+.|+. +..+++|+.|+|++|+|+++++
T Consensus 43 ~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 43 KLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp T--EEE-TTS--S--TT------TT--EEE--SS---S-CH
T ss_pred CCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCcccc
Confidence 45556666666665542 3445556666666666665543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.40 E-value=0.0013 Score=57.10 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=24.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
..|.+|++++|+|..+++.....+++|+.|+|++|+|+.++.-..
T Consensus 64 ~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~ 108 (175)
T PF14580_consen 64 PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEP 108 (175)
T ss_dssp TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGG
T ss_pred hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHH
Confidence 578999999999999987655678999999999999999877544
No 32
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0024 Score=35.14 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=10.9
Q ss_pred ceeEEEecCCcceeeccc
Q psy11830 31 VMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 31 ~~~~l~l~~n~i~~~~~~ 48 (387)
+|++|||++|+|+.+|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 356666666666666655
No 33
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.23 E-value=0.0023 Score=35.26 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.1
Q ss_pred ceeeEEEccCccccCCCCCcccc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSND 29 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (387)
+|++||+++|+|+.||+. |++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT-
T ss_pred CccEEECCCCcCEeCChh-hcCC
Confidence 589999999999999988 7654
No 34
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.11 E-value=0.083 Score=49.82 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=83.1
Q ss_pred hcccceeeeeeeccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---eeeccccCcccC-ccchhhhHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSE-KSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE---VYFNYAYDWQKG-YGCKVAGFVTVFA 221 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l-~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~---~~~~~~~~w~~g-~~C~~~~~~~~~~ 221 (387)
+.|.+.++.+.++... -+...+++.|-|+.|++.++....... .....+ .++.++.--.+| ..|.....+...+
T Consensus 14 ~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~ 92 (292)
T PF10317_consen 14 ILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHF 92 (292)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHHHHHHHHHHHHH
Confidence 8899888887654433 356678999999999999877655442 222221 122222222234 5687777777778
Q ss_pred HHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 222 SQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 222 ~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
...|.+++..--.-||..+.++.. ++++....+.+.+..++.......+
T Consensus 93 ~~~s~~~i~~sf~yRy~iL~~~~~----~~~~~i~~~~l~~~p~~~~~i~~~~ 141 (292)
T PF10317_consen 93 SIHSGWSIILSFYYRYYILRNPSP----SRKRIIFICILIYIPSFSMLIFFFF 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 888889999999999999998754 4466777777777777666544443
No 35
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.03 E-value=0.0027 Score=36.45 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.4
Q ss_pred ccceeEEEecCCcceeecccccc
Q psy11830 29 DLVMEVIFLGYNNIKIIEGRAFN 51 (387)
Q Consensus 29 ~~~~~~l~l~~n~i~~~~~~~f~ 51 (387)
+.+|+.|+|++|+|+.+++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788899999999999888885
No 36
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.03 E-value=0.0027 Score=36.45 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.4
Q ss_pred ccceeEEEecCCcceeecccccc
Q psy11830 29 DLVMEVIFLGYNNIKIIEGRAFN 51 (387)
Q Consensus 29 ~~~~~~l~l~~n~i~~~~~~~f~ 51 (387)
+.+|+.|+|++|+|+.+++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788899999999999888885
No 37
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=95.69 E-value=0.093 Score=48.88 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=59.2
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cceeeccccCcccCccchhhhHHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQS--TEVYFNYAYDWQKGYGCKVAGFVTVFASQL 224 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~--~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~ 224 (387)
..|...+..+...|+.+++.-.++---.+.|.+.+....+........ ..+.. +.++ .=-..+.........
T Consensus 21 ~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~if~~~~p~~~~~~i 94 (273)
T PF10316_consen 21 LINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFL--DYKN----LIFYIGWPSSNLGSI 94 (273)
T ss_pred HHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhh--cccc----EEeehhhhHHHHHHH
Confidence 778888888876666545555556667889999998875544433321 11111 0011 001112222333455
Q ss_pred HHHHHHHHHHHHHhheeccccccc
Q psy11830 225 SIFTLGMITLERWYSIKRALYANK 248 (387)
Q Consensus 225 Si~~L~~isidRy~aI~~P~~~~~ 248 (387)
.......||+||-+|+..|..|++
T Consensus 95 R~~l~~~Ia~dR~~A~~fPI~y~~ 118 (273)
T PF10316_consen 95 RSILALIIALDRVFAVYFPIFYHN 118 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHc
Confidence 667778899999999999999987
No 38
>KOG0444|consensus
Probab=95.61 E-value=0.0028 Score=64.02 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=34.2
Q ss_pred cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccc
Q psy11830 4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRA 49 (387)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~ 49 (387)
||+++.+|.|++|+|+.||...|.+|..|-.||||+|++..+|++.
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 5667777777777777777777777777777777777777777654
No 39
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=95.11 E-value=0.013 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.211 Sum_probs=17.9
Q ss_pred ccceeEEEecCCcceeecccc
Q psy11830 29 DLVMEVIFLGYNNIKIIEGRA 49 (387)
Q Consensus 29 ~~~~~~l~l~~n~i~~~~~~~ 49 (387)
+.+|+.|||+.|.|+.++.-.
T Consensus 1 L~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CCccCEEECCCCccceecCcc
Confidence 468999999999999998764
No 40
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=94.88 E-value=0.28 Score=47.09 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccceeec------cccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhe
Q psy11830 167 RFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFN------YAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSI 240 (387)
Q Consensus 167 ~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~------~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI 240 (387)
.-.+..||+||++.++-++.-...-..+.. ... ..+.|+- ..|.....-..++..++.+-+.+-|+|=|+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~-~~~s~s~~~~~d~wp~-afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~ 145 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPN-FIDSISDVNGTDIWPA-AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVI 145 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCc-ccccccCCCCCccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 457899999999998876665554333221 111 1122321 57877765556677788888889999999988
Q ss_pred eccccccccccchhhhhhHHHHHHHHHHhh
Q psy11830 241 KRALYANKLTIHRTTYFILVGYVYASIMGA 270 (387)
Q Consensus 241 ~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~ 270 (387)
.+.-. +.+....=.+.|..+.++..
T Consensus 146 ~~~ag-----~~~~~lYH~~aWgl~~lL~~ 170 (405)
T PF02101_consen 146 RRSAG-----RSTIWLYHMMAWGLPALLCA 170 (405)
T ss_pred eccCC-----CcchhHHHHHHHHHHHHHHH
Confidence 54321 12234555678888877663
No 41
>KOG0472|consensus
Probab=94.68 E-value=0.01 Score=57.09 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=35.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
+++..||+..|++++.|.... -+.+|+.||||+|+|+.++..
T Consensus 252 ~~l~vLDLRdNklke~Pde~c-lLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEIC-LLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ccceeeeccccccccCchHHH-HhhhhhhhcccCCccccCCcc
Confidence 678889999999999998877 577899999999999988764
No 42
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.61 E-value=0.41 Score=45.99 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=59.9
Q ss_pred ccceeeeeeeccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce-eeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830 149 NAAVLAVTLSRTSEK-SVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV-YFNYAYDWQKG-YGCKVAGFVTVFASQLS 225 (387)
Q Consensus 149 N~lvi~vi~~~~~l~-t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~-~~~~~~~w~~g-~~C~~~~~~~~~~~~~S 225 (387)
....+..+.++.-.+ +....++.+|..+++=-..+.....- ..++.- +....-+..+. ..|.........+....
T Consensus 38 s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~--~lyrsf~~~~dpC~i~f~~~eC~~~~~~~~~~~~~~ 115 (328)
T PF02117_consen 38 SVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIW--SLYRSFFYSDDPCSILFTSSECFPYYYFYYFTNSGM 115 (328)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCeeeEeecCceeeeehHHHHHHHHH
Confidence 333333333333334 44456778888887766555432211 111211 11222245555 77998888888888888
Q ss_pred HHHHHHHHHHHHhheecccccc
Q psy11830 226 IFTLGMITLERWYSIKRALYAN 247 (387)
Q Consensus 226 i~~L~~isidRy~aI~~P~~~~ 247 (387)
++.-+++++||-+|-..|-.++
T Consensus 116 ~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 116 IFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred HHHHHHHHHHHHHHHhchhhhh
Confidence 9999999999999998886554
No 43
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=94.41 E-value=0.091 Score=48.82 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=41.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHH
Q psy11830 210 GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASI 267 (387)
Q Consensus 210 ~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~ 267 (387)
..++..++......+-..+...+|++|+-++..|.++.+ -++ .....++++.++++.
T Consensus 80 ~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~-~~~~~i~~i~~~p~~ 137 (275)
T PF02118_consen 80 FLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKR-YYWIIIIIIFLLPFS 137 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHh-hhhhheeeeeehhHH
Confidence 456666777778888889999999999999999999988 443 333344444444443
No 44
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=94.38 E-value=0.029 Score=53.21 Aligned_cols=111 Identities=8% Similarity=0.064 Sum_probs=68.7
Q ss_pred hcccceeeeeeeccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecc--ccCcccC-ccchhhhHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKS-VPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNY--AYDWQKG-YGCKVAGFVTVFAS 222 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t-~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~--~~~w~~g-~~C~~~~~~~~~~~ 222 (387)
+.|.+.+..+.++.+.+. .-.+++...|+.|+..++.-....-.-...++..... .+.+..+ ...+....+...+.
T Consensus 14 ~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~f 93 (307)
T PF10326_consen 14 FLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILLAIYCGCF 93 (307)
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehhhhhhhhH
Confidence 889888888765444333 3346677788889888876443322222222222222 2333334 45566666667777
Q ss_pred HHHHHHHHHHHHHHHhheeccccccccccchhhhh
Q psy11830 223 QLSIFTLGMITLERWYSIKRALYANKLTIHRTTYF 257 (387)
Q Consensus 223 ~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~ 257 (387)
..+...++.-=+.||.++++|.+-+..+.++....
T Consensus 94 ~~~~~llaihFiYRY~av~~~~~l~~f~~~~~~~w 128 (307)
T PF10326_consen 94 GMSFSLLAIHFIYRYWAVCRPKKLRYFSGWRFIIW 128 (307)
T ss_pred HHHHHHHHhHhhhheeeeccchhhccccccceeee
Confidence 77888888899999999999987655443444333
No 45
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.29 E-value=0.026 Score=28.90 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=5.9
Q ss_pred ceeEEEecCCcceee
Q psy11830 31 VMEVIFLGYNNIKII 45 (387)
Q Consensus 31 ~~~~l~l~~n~i~~~ 45 (387)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555555443
No 46
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.83 E-value=0.027 Score=32.18 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=20.1
Q ss_pred cceeeEEEccCccccCCCCCcc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVS 27 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (387)
.+|..|++++|+|+.||+..|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4789999999999999999886
No 47
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.83 E-value=0.027 Score=32.18 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=20.1
Q ss_pred cceeeEEEccCccccCCCCCcc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVS 27 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (387)
.+|..|++++|+|+.||+..|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4789999999999999999886
No 48
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.038 Score=28.25 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=11.3
Q ss_pred ceeeEEEccCccccCC
Q psy11830 7 SLLDMKIVRTGLNHIP 22 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (387)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 6899999999999987
No 49
>KOG0444|consensus
Probab=93.43 E-value=0.032 Score=56.71 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=40.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+.|+.|||++|++++.|++.= .-.++-+|+||+|+|..||...|-.+
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinL 149 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINL 149 (1255)
T ss_pred ccceeeecchhhhhhcchhhh-hhcCcEEEEcccCccccCCchHHHhh
Confidence 468899999999999997643 55789999999999999999999776
No 50
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=93.22 E-value=0.035 Score=61.19 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=16.9
Q ss_pred eeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830 8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
|.+|++++|++.......+.++++|+.|+|++|.++...+..|
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 3333344443333333333334444444444444444433333
No 51
>KOG0618|consensus
Probab=93.12 E-value=0.02 Score=60.52 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=42.9
Q ss_pred cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccc
Q psy11830 4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRA 49 (387)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~ 49 (387)
+|.+|+.|.|.+|+++.+|...+.++..||+|+||+|+++.++...
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv 426 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV 426 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH
Confidence 5789999999999999999999999999999999999999999543
No 52
>KOG1644|consensus
Probab=93.04 E-value=0.058 Score=47.41 Aligned_cols=83 Identities=11% Similarity=0.136 Sum_probs=51.1
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC--CCCCCCchhhhH
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP--RPSAYNTYYNFT 82 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~l 82 (387)
-+..-.+|+.+|.|..++ -|..++.|..|+|++|+|+.|++....-. .+++.+...+.+... .-|+.-.|-..-
T Consensus 41 ~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~--p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFL--PNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhc--cccceEEecCcchhhhhhcchhccCCccc
Confidence 346678899999988886 45678899999999999999998765333 333443322222111 223333333333
Q ss_pred HhhhccCee
Q psy11830 83 RLIFPGNAA 91 (387)
Q Consensus 83 ~~~~~gn~~ 91 (387)
.+.++||-.
T Consensus 117 ~Ltll~Npv 125 (233)
T KOG1644|consen 117 YLTLLGNPV 125 (233)
T ss_pred eeeecCCch
Confidence 345677765
No 53
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=92.99 E-value=0.12 Score=43.54 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhee-------cccCCceeeecc
Q psy11830 217 VTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGI-------SSYSTTSICLPM 288 (387)
Q Consensus 217 ~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~-------~~~~~~~~C~~~ 288 (387)
+..++.....+.-..|+++|-..|.+|.+... .|.+|....+.++.+..+..-+.|.+.. .+....+.|.|.
T Consensus 50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~Cap~ 129 (153)
T PF03383_consen 50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSACAPD 129 (153)
T ss_pred eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEccCCC
Confidence 34555666678888999999999999999987 9999999999988888888777888731 122235568764
No 54
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=92.68 E-value=0.079 Score=58.47 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=42.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++....+..|.++++|+.|||++|+++..-+..+.++
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 578999999999999888999999999999999999998777777554
No 55
>PLN03150 hypothetical protein; Provisional
Probab=92.57 E-value=0.069 Score=55.93 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=31.5
Q ss_pred eeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+..|+|++|++.......++.+.+|+.|+|++|+++..-+..+..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l 465 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 6677777777775555567777777777777777776555555554
No 56
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=92.42 E-value=0.88 Score=43.17 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeeccC--
Q psy11830 212 KVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMD-- 289 (387)
Q Consensus 212 ~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~-- 289 (387)
++..++.....+.|.+.-...++-|-+-+..|.++++..++-....+.++.+.+++.+. |.+ ...+.|.+..
T Consensus 104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f-~~~-----pa~G~C~Ql~~P 177 (307)
T PF10322_consen 104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTF-PMF-----PALGYCRQLDPP 177 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHH-Hcc-----CCcEEEEeCCCC
Confidence 56667778888999999999999999999999988665555556666666666666663 322 2344454221
Q ss_pred ----------cCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830 290 ----------TRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVL 328 (387)
Q Consensus 290 ----------~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~ 328 (387)
.....+.............-.+.+++.+..+++++|+.+
T Consensus 178 f~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 178 FPFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222222333333345566777888899999999876
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.40 E-value=0.12 Score=41.83 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=30.6
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|.++.+.+ ++..|++..|.+..+|+.+++.+| ++.++..+|.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~ 57 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC 57 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecc
Confidence 688888874 788999999999988999998775 999999999887
No 58
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=91.30 E-value=3.8 Score=38.86 Aligned_cols=180 Identities=12% Similarity=0.119 Sum_probs=92.8
Q ss_pred hcccceeeeeee-ccCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHhhccceeeccc-cCcccCccchhhhHHHHHH
Q psy11830 147 KGNAAVLAVTLS-RTSEKSVPRFLI---SHLAMADLCMAFYLLLLAIKDLQSTEVYFNYA-YDWQKGYGCKVAGFVTVFA 221 (387)
Q Consensus 147 ~gN~lvi~vi~~-~~~l~t~~~~~i---~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~-~~w~~g~~C~~~~~~~~~~ 221 (387)
+-|.+.++.+.. .+++.+-.++++ ....++|+-.+...-|....... |.|...- .+| +|..+.....+..+.
T Consensus 24 ~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~--agy~~G~l~~~-f~i~~h~~~~i~~~l 100 (303)
T PF10327_consen 24 ILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIP--AGYCVGFLARY-FGISSHYLMTIWIFL 100 (303)
T ss_pred HHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhccee--EEEEEeehhhc-CCCchHHHHHHHHHH
Confidence 888888877665 444444333322 55678999999888887775543 2122210 111 222333333444444
Q ss_pred HHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhh--eecccC-------CceeeeccC---
Q psy11830 222 SQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMF--GISSYS-------TTSICLPMD--- 289 (387)
Q Consensus 222 ~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~--~~~~~~-------~~~~C~~~~--- 289 (387)
...-.-.++.--+-|+-+|.+..+.++.++..-...........+..+ ..+. +.++.+ +...|.+..
T Consensus 101 ~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~-~~~~~~~~s~eeq~~yI~~nyP~~~~~F~~l 179 (303)
T PF10327_consen 101 FIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIF-ICFYFSGMSREEQMEYIRENYPEYLSWFSSL 179 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHH-HHHHhcCCCHHHHHHHHHhhCCchhHHHhcC
Confidence 445556666667889999999887765444433333333343333333 2221 211110 111232211
Q ss_pred ------cCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 290 ------TRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 290 ------~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
+.+...........+....-..+..+++.++++.+++.+++
T Consensus 180 ~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~ 226 (303)
T PF10327_consen 180 PNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKK 226 (303)
T ss_pred CCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111112223334566777888899999988776664
No 59
>KOG0617|consensus
Probab=91.29 E-value=0.033 Score=47.71 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=47.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCCCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNT 77 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~ 77 (387)
...+.|.+++|++..+|.+. +++.+|+.|+|.+|+|..++.+.= ++ .+++.+...-.+.+-.|..|-+
T Consensus 33 s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~is-sl--~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSIS-SL--PKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhh-hc--hhhhheecchhhhhcCccccCC
Confidence 45788999999999999887 589999999999999999987643 22 3333333332333334555443
No 60
>KOG4579|consensus
Probab=91.01 E-value=0.042 Score=45.38 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=36.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
..|+..++++|.++..|+..-.-.+..+.++|++|+|+.+|.+ +...
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam 99 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAM 99 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhhh
Confidence 3577788899999988876655556888889999999988888 6554
No 61
>KOG4579|consensus
Probab=90.95 E-value=0.026 Score=46.60 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=55.1
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhhH
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFT 82 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l 82 (387)
.++.|.+++|.|..+|+. ++.++.|+-++++.|.+...+.-.+. + .++..+..++..-.| ..|.|.+....+
T Consensus 78 t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L--~~l~~Lds~~na~~eid~dl~~s~~~al 150 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-L--IKLDMLDSPENARAEIDVDLFYSSLPAL 150 (177)
T ss_pred hhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-H--HhHHHhcCCCCccccCcHHHhccccHHH
Confidence 567899999999999998 99999999999999999988776664 4 566666555554444 556666655443
No 62
>KOG4193|consensus
Probab=90.78 E-value=0.96 Score=46.97 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=84.7
Q ss_pred eeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC--c-cchhhhHHHHHHHHHHHHHH
Q psy11830 153 LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG--Y-GCKVAGFVTVFASQLSIFTL 229 (387)
Q Consensus 153 i~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g--~-~C~~~~~~~~~~~~~Si~~L 229 (387)
+++...-|++++..+....||+++ ++++-..... +.|..+ . .|+...++..++..+..+-+
T Consensus 341 i~ty~~~~~l~~~~~~i~~~l~~~-L~l~~l~fL~---------------~~~~~~~~~~~C~~~a~llhff~LaaF~Wm 404 (610)
T KOG4193|consen 341 IATYLLFRKLQNDRTKIHINLCLC-LFLAELLFLL---------------GIDRTSTSVVLCIAAAILLHFFFLAAFFWM 404 (610)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHhc---------------ccccccCcccccHHHHHHHHHHHHHHHHHH
Confidence 334444455544446777788777 2222221111 134444 3 69999999999999999999
Q ss_pred HHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe-ecc---cCCceeeeccCcCcccchhhhHHHHHH
Q psy11830 230 GMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG-ISS---YSTTSICLPMDTRHLGSKIYVHTLLLF 305 (387)
Q Consensus 230 ~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~-~~~---~~~~~~C~~~~~~~~~~~~~~~~~~~~ 305 (387)
..+++.=|..++.-.+. ..+++........|...+++..+-... ... |.....|+...+......
T Consensus 405 ~leg~hl~~~~v~vf~~--~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~--------- 473 (610)
T KOG4193|consen 405 LLEGFHLYLLLVEVFRS--RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS--------- 473 (610)
T ss_pred HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE---------
Confidence 99999988865544432 234444445468998877666444432 222 445566875433322211
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11830 306 SSLVFAMICVCYFQIYSS 323 (387)
Q Consensus 306 ~~iPl~ii~~~Y~~I~~~ 323 (387)
|+.|+.+++.+++.++..
T Consensus 474 F~GPv~~ii~~Ni~~Fv~ 491 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFVV 491 (610)
T ss_pred EehHHHHHHHHHHHHHHH
Confidence 566777777777655533
No 63
>KOG1259|consensus
Probab=90.51 E-value=0.1 Score=48.64 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=39.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
+.|+++|+++|.|+.|.|.. .-+++++.|+||.|.|+.++..+|..
T Consensus 284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~nLa~L~ 329 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQNLAELP 329 (490)
T ss_pred hhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehhhhhcc
Confidence 46899999999999997654 47789999999999999999977743
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.50 E-value=0.28 Score=39.58 Aligned_cols=46 Identities=28% Similarity=0.303 Sum_probs=34.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|.++++.++ ++.|++..|.+.++++.+.+++ .+..+++..|...
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred ccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 36889999774 9999999999998999999975 8999999999865
No 65
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=90.21 E-value=0.54 Score=41.27 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=29.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheecccccc
Q psy11830 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN 247 (387)
Q Consensus 209 ~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~ 247 (387)
..|.+..-+........-...+++|++||+-|+.-.|..
T Consensus 115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~ 153 (226)
T PF06681_consen 115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLS 153 (226)
T ss_pred EeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCC
Confidence 679998876666665555666689999999999765543
No 66
>PLN03150 hypothetical protein; Provisional
Probab=90.06 E-value=0.14 Score=53.62 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=43.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|+.|++++|++...-+..++.+.+|+.|||++|+++...+..+..+ .+|+.+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--~~L~~L 495 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL--TSLRIL 495 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC--CCCCEE
Confidence 578999999999985445568999999999999999998877777665 444444
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=89.91 E-value=0.17 Score=32.99 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=19.8
Q ss_pred cceeEEEecCCcceeeccccccCccccccccc
Q psy11830 30 LVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 30 ~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
++|+.|+|++|+|+.+++ .+..+ .+++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l--~~L~~L 29 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNL--PNLETL 29 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTC--TTSSEE
T ss_pred CcceEEEccCCCCcccCc-hHhCC--CCCCEE
Confidence 479999999999999988 35454 444443
No 68
>KOG1259|consensus
Probab=89.63 E-value=0.16 Score=47.36 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
+-.++.|++++|+|..+.. .+.+.+|++||||+|.++.++.-
T Consensus 306 ~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred ccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh
Confidence 3468899999999999976 66789999999999999988764
No 69
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.12 E-value=0.28 Score=52.29 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=24.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
.+|+.|++++|+|+.+|+..+ .+|+.|+|++|+++.++..
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~ 238 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPAT 238 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChh
Confidence 456667777777777766554 2556666666666665543
No 70
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=88.71 E-value=4.3 Score=37.51 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=96.6
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHH----HHHHHHhhccceeeccccCcccCccchhhhHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLL----LLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFAS 222 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~----~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~ 222 (387)
.|-.+|+.++..+.=.+-+--.|+..|..+-.+...... |-...+.... +..-+..-.+..+....+.
T Consensus 30 t~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~--------~~~~s~~f~~~Sy~idf~h 101 (305)
T PF04789_consen 30 TGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITK--------EFVQSELFIFMSYLIDFCH 101 (305)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhH--------HHhccchhhHHHHHHHHHH
Confidence 333444444433333345567899999999888776543 3333222211 1111123345566777888
Q ss_pred HHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe-----ecc--cCCceeeecc---CcC
Q psy11830 223 QLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG-----ISS--YSTTSICLPM---DTR 291 (387)
Q Consensus 223 ~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~-----~~~--~~~~~~C~~~---~~~ 291 (387)
++-.++=..+|+.|....-.-....+ ..+.-..+....+|++++......... ++. .+..-.|... ...
T Consensus 102 ~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~ 181 (305)
T PF04789_consen 102 YSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDI 181 (305)
T ss_pred HHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEee
Confidence 88889999999999987764433334 667778888899999988765322221 111 1123356432 111
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11830 292 HLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325 (387)
Q Consensus 292 ~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr 325 (387)
++....-.+-..+-+.+|..+ ...|+.+..++-
T Consensus 182 ~~P~~IqiiE~ilQ~~IPi~I-l~iYiAIIiKI~ 214 (305)
T PF04789_consen 182 SPPRGIQIIEIILQFGIPIFI-LVIYIAIIIKII 214 (305)
T ss_pred CCCCchhHHHHHHHHhHHHHH-HHHHHHHHHHHH
Confidence 222333345556667888665 455766665543
No 71
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=88.49 E-value=0.42 Score=51.00 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=19.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
++|.+|++++|+++.||...+ .+|+.|+|++|+++.+|+
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPE 258 (754)
T ss_pred cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCCh
Confidence 355666666666666654322 234444444444444433
No 72
>PHA03234 DNA packaging protein UL33; Provisional
Probab=88.14 E-value=0.16 Score=49.04 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=33.3
Q ss_pred hhhccCeeEEEeee--ccCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTL--SRTSEKSVPRFLISHLAMADLCMAFYLLLL 127 (387)
Q Consensus 84 ~~~~gn~~~~~~~~--~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii 127 (387)
+.+.||.+|+.+.. .++..++....++.|||+||+++++.+...
T Consensus 45 ~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~ 90 (338)
T PHA03234 45 LIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFL 90 (338)
T ss_pred HHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998543 333445778899999999999988765443
No 73
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=87.62 E-value=13 Score=33.66 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=34.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc
Q psy11830 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK 248 (387)
Q Consensus 209 ~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~ 248 (387)
..||.......+....+.+.-..+++||++|....-+|.+
T Consensus 83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 4466677777888889999999999999999999888876
No 74
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=87.59 E-value=0.31 Score=52.07 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=24.9
Q ss_pred cceeeEEEccCccccCCCCCc----------------ccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV----------------SNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|.+|++++|+|+.+|+..- ....+|+.|+|++|+|+.++.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~ 399 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV 399 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCC
Confidence 366777777777776664331 011356667777777766654
No 75
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=85.55 E-value=0.64 Score=49.70 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=25.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|..|++.+|+|+.||+. .++|+.|+|++|+|+.+++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~ 259 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPV 259 (788)
T ss_pred cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccC
Confidence 4566777777777777643 4567777777777777753
No 76
>KOG0472|consensus
Probab=85.49 E-value=0.082 Score=51.13 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=19.1
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
+|..|++.+|+|.++| .|.+...|.+++++.|+|+.+|+..-
T Consensus 207 ~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~ 248 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHL 248 (565)
T ss_pred hhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHh
Confidence 3444445555555554 33444444444444444444444433
No 77
>KOG0531|consensus
Probab=84.70 E-value=0.45 Score=47.21 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=37.6
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
.+|..|++.+|+|+.|... ...+++|+.|+|+.|.|+.+++.+...
T Consensus 95 ~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~ 140 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLT 140 (414)
T ss_pred cceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhcc
Confidence 5788899999999998643 567889999999999999888876644
No 78
>KOG4220|consensus
Probab=83.01 E-value=0.68 Score=45.03 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=35.3
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
+.+.||++|.+.....++-.+|..+.+.+||+||++.|++.
T Consensus 43 VTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~S 83 (503)
T KOG4220|consen 43 VTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFS 83 (503)
T ss_pred HhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheee
Confidence 46899999998877777778899999999999999988664
No 79
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=82.38 E-value=6.6 Score=39.06 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=30.5
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
++++||.+|+....+ ++.++...+.+.|||++|++..+-+
T Consensus 111 lgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~l 150 (417)
T PHA02638 111 LGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDF 150 (417)
T ss_pred HHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHH
Confidence 368999999866443 5556678899999999998765433
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.06 E-value=0.87 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=11.8
Q ss_pred ceeeEEEccCccccCCCC
Q psy11830 7 SLLDMKIVRTGLNHIPQF 24 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (387)
+|.+|..++|++..+|+.
T Consensus 3 ~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 3 SLKELNVSNNQLTSLPEL 20 (26)
T ss_pred ccceeecCCCccccCccc
Confidence 566666677777666653
No 81
>KOG1644|consensus
Probab=79.01 E-value=1.2 Score=39.30 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=37.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
+.|-.|.+.+|+|+.|.+..-.-+++|..|.|.+|.|+.+.+.
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl 106 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL 106 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc
Confidence 4567899999999999999888889999999999999887543
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.18 E-value=1.1 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=12.2
Q ss_pred ccceeEEEecCCcceeecc
Q psy11830 29 DLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 29 ~~~~~~l~l~~n~i~~~~~ 47 (387)
+++|+.|+|++|+|+....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGA 19 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHH
T ss_pred CCCCCEEEccCCcCCHHHH
Confidence 3678899999999876543
No 83
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=76.76 E-value=0.74 Score=45.12 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=20.7
Q ss_pred ceeeEEEccCccccCCCCCcccc-cceeEEEecCCcceee
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSND-LVMEVIFLGYNNIKII 45 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~n~i~~~ 45 (387)
.+..|++.+|+++.||.... .+ .+|+.|++++|+|+.+
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~i~~l 155 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNKIESL 155 (394)
T ss_pred ceeEEecCCcccccCccccc-cchhhcccccccccchhhh
Confidence 35556666666666654433 22 2566666666666655
No 84
>PHA02834 chemokine receptor-like protein; Provisional
Probab=76.51 E-value=1.7 Score=41.54 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=29.3
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
+++.||.+++....+++.. +....++.|||+||+++.+.+
T Consensus 41 ~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~~~~l 80 (323)
T PHA02834 41 FGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLMLVFSF 80 (323)
T ss_pred HHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHHHHHH
Confidence 4799999998765554333 446789999999998765443
No 85
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=75.54 E-value=0.45 Score=42.52 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=33.8
Q ss_pred cCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhcc
Q psy11830 88 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKD 131 (387)
Q Consensus 88 gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~~ 131 (387)
||.+++....++++.++....++.|||++|++.++.........
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~ 44 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYS 44 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccc
Confidence 78877777666666667788899999999999988776665553
No 86
>KOG4564|consensus
Probab=73.65 E-value=32 Score=34.61 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=77.9
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcc----cC-ccchhhhHHHHHHHHHHHHH
Q psy11830 154 AVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ----KG-YGCKVAGFVTVFASQLSIFT 228 (387)
Q Consensus 154 ~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~----~g-~~C~~~~~~~~~~~~~Si~~ 228 (387)
.++..-|++|-..|+.=.||-++=++-++..+.....-....+.....+..+. .+ ..|+...++...+..+..+-
T Consensus 167 ~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~W 246 (473)
T KOG4564|consen 167 IIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFW 246 (473)
T ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888999999888887766655533221111111111222 22 78999988888887777777
Q ss_pred HHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeeccCc
Q psy11830 229 LGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDT 290 (387)
Q Consensus 229 L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~~ 290 (387)
+.+=.+.=|-.++-.... .+++-.....+-|-+..++. .+......+.++..|+....
T Consensus 247 mlvEGlYLhtLlv~~~~s---er~~~~~y~~iGWG~P~v~v-~~Wai~r~~~~d~~CW~~~~ 304 (473)
T KOG4564|consen 247 MLVEGLYLHTLLVVAFFS---ERRYFWLYLLIGWGVPAVFV-VVWAIVRLYLEDTGCWDSND 304 (473)
T ss_pred HHHHHHHHHHhhheeecc---CccHHHHHHHHhhCCcHHHh-hhHHhHheeeccccccccCC
Confidence 776666655444333222 13555666777787766655 33332223334446875544
No 87
>KOG0532|consensus
Probab=73.02 E-value=0.9 Score=46.10 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=22.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|++|.+.+|++.++|+... .| .|..||++.|+|.+|+
T Consensus 189 ~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceeecc
Confidence 455666666666666665554 22 3566666666666665
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=72.94 E-value=1.7 Score=51.81 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=29.9
Q ss_pred EEccCccccCCCCCcccccceeEEEecCCcce
Q psy11830 12 KIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIK 43 (387)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~ 43 (387)
||++|+|..||+..|.++.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999999999999999999999999764
No 89
>KOG0617|consensus
Probab=71.42 E-value=0.98 Score=38.91 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=37.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|..|.+.+|+|+++|... +.+++|+.|+++-|++..++ +.|.+.
T Consensus 56 ~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lp-rgfgs~ 101 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILP-RGFGSF 101 (264)
T ss_pred hhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCc-cccCCC
Confidence 47888999999999998655 68999999999999997664 556554
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.25 E-value=2.2 Score=24.69 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=11.7
Q ss_pred cceeEEEecCCccee
Q psy11830 30 LVMEVIFLGYNNIKI 44 (387)
Q Consensus 30 ~~~~~l~l~~n~i~~ 44 (387)
.+|+.|||++|.|+.
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 468888888888864
No 91
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=71.16 E-value=2.6 Score=41.28 Aligned_cols=45 Identities=9% Similarity=-0.031 Sum_probs=31.3
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
++..|++++|++.+++. ...+.+++.||+++|.+..+++....+.
T Consensus 256 ~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 256 NLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred ccceecccccccccccc--ccccCccCEEeccCccccccchhhhccc
Confidence 46677777777777766 6677777777777777776666665543
No 92
>KOG0531|consensus
Probab=70.91 E-value=1.7 Score=43.18 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=35.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|..|++++|+|..|.... .+..|+.|++++|.|+.++.-..
T Consensus 118 ~~L~~L~ls~N~I~~i~~l~--~l~~L~~L~l~~N~i~~~~~~~~ 160 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLEGLS--TLTLLKELNLSGNLISDISGLES 160 (414)
T ss_pred hcchheeccccccccccchh--hccchhhheeccCcchhccCCcc
Confidence 47889999999999997543 45559999999999999987764
No 93
>KOG0618|consensus
Probab=70.63 E-value=0.83 Score=48.82 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=39.7
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+..|.+|.+-+|++++==--.+-+..+|+.|+|++|++...|+..+..+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch
Confidence 3467788889988876444455677899999999999999999998766
No 94
>KOG1859|consensus
Probab=68.39 E-value=0.96 Score=47.28 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=37.5
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQ 54 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~ 54 (387)
...|..|+|++|++.... ....+.+|.+|||+.|++++++.-.-.+.+
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh
Confidence 345678889999988885 445778899999999999998877766653
No 95
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=67.99 E-value=1.2e+02 Score=29.19 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe--ecccCCceeee
Q psy11830 209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG--ISSYSTTSICL 286 (387)
Q Consensus 209 ~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~--~~~~~~~~~C~ 286 (387)
..|.+...+.+.+..++..=-+.+++.=|++........ .-.++....=.+.|.++.+..+..+.. .+..+-.+.|+
T Consensus 92 ~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e-~i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~ 170 (328)
T PF01534_consen 92 SSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSE-AIEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICF 170 (328)
T ss_pred CchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcc-hhhhhcchhhhHHhhhhHHHHHHHHHhcccccccccceeE
Confidence 679999888888888887777888998888887655433 334566677888999988877444432 22233367797
Q ss_pred ccCcC
Q psy11830 287 PMDTR 291 (387)
Q Consensus 287 ~~~~~ 291 (387)
-...+
T Consensus 171 Vg~~~ 175 (328)
T PF01534_consen 171 VGNQN 175 (328)
T ss_pred EeCCC
Confidence 54433
No 96
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=66.40 E-value=58 Score=30.43 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=63.8
Q ss_pred hcccceeeeeeec--cCCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHH
Q psy11830 147 KGNAAVLAVTLSR--TSEKSVPRFLI----SHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVF 220 (387)
Q Consensus 147 ~gN~lvi~vi~~~--~~l~t~~~~~i----~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~ 220 (387)
.-|.+.++.+.++ +++++.. ..+ ....+.|+..+....|......... +...--.|. |....++.++...
T Consensus 19 Pi~~~~~y~Il~ktp~~m~~~k-~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~--~~~G~l~~~-gv~~~~q~~i~~~ 94 (302)
T PF10318_consen 19 PIYIFGFYCILFKTPKSMKSVK-WYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAG--YPLGILSYF-GVPTPIQFYIGVT 94 (302)
T ss_pred HHHHHHHHheeEeChhhhHHHH-HHHHHHHHHHHHHHHHhhhEEeeeeccchHHh--hCCcchhhc-ccChHHHHHHHHH
Confidence 4555555544443 3333332 333 3345677777776655443222110 000000111 2345666777777
Q ss_pred HHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 221 ASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 221 ~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
.......+...+--.||.++....+ +...++..........+.+.....++..
T Consensus 95 ~~~~~~~S~~~lFe~R~~~i~~~~~-~~~~~~~r~~~~~~~y~~~~~~~~~~~~ 147 (302)
T PF10318_consen 95 LLAFVGVSILSLFENRYQIIIRNRS-RSLWKKIRIIFIIFNYIIAFLFFIPIYL 147 (302)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 7777788888888999999997655 2222333333444444555555534444
No 97
>KOG3207|consensus
Probab=64.43 E-value=1.5 Score=43.08 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=34.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
-+|.+|+++.|..-.+.+..+..+..|++|||++|++.+.+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 36788889998877777888888889999999999987766
No 98
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=64.36 E-value=7.9 Score=36.90 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=32.4
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
+++.||..++....++ +.++....++.|+|++|++.++..
T Consensus 53 ~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~ 92 (335)
T PHA03087 53 FGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTL 92 (335)
T ss_pred HHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhH
Confidence 3689999999887666 666778889999999999876654
No 99
>PHA03235 DNA packaging protein UL33; Provisional
Probab=64.15 E-value=2.7 Score=41.63 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=29.0
Q ss_pred hhccCeeEEEeee-cc-CCCCCcchhhhhhhhHHHHHHHHHHHHH
Q psy11830 85 IFPGNAAVLAVTL-SR-TSEKSVPRFLISHLAMADLCMAFYLLLL 127 (387)
Q Consensus 85 ~~~gn~~~~~~~~-~~-~~~~~~~~~~~~~l~~ad~~~~~~~~ii 127 (387)
.+.||.+|+.... +. .+..+.+..++.|||+||+++.+.+...
T Consensus 46 GiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~ 90 (409)
T PHA03235 46 GGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFI 90 (409)
T ss_pred HHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999887532 22 2223455688999999999876554433
No 100
>KOG2123|consensus
Probab=56.47 E-value=1.3 Score=41.09 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=38.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
..|.+|.|+=|+|..+. ++..+.+|++|||..|.|..+++..+..
T Consensus 41 p~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred ccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 46889999999999985 6788899999999999999988877643
No 101
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=56.22 E-value=83 Score=30.59 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc
Q psy11830 214 AGFVTVFASQLSIFTLGMITLERWYSIKRALYANK 248 (387)
Q Consensus 214 ~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~ 248 (387)
.+++..-......+.+.++++||.+|-...-.|.+
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk 160 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEK 160 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555566679999999999999999988886
No 102
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=55.01 E-value=8.9 Score=43.42 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=20.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCC-cceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYN-NIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n-~i~~~~ 46 (387)
++|.+|++.+|+++.+|+.. ..+.+|+.|+|++| .++.++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred cCCcEEECcCcccccccccc-ccCCCCCEEECCCCCCcCcCC
Confidence 34555555555555555433 45555566666543 344444
No 103
>KOG0532|consensus
Probab=49.66 E-value=9.3 Score=39.10 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=36.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
-.|..||.+.|++..||- -|..|..|++|-|++|-++.-+..
T Consensus 211 LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHH
Confidence 368899999999999974 577999999999999998876654
No 104
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=49.56 E-value=6.4 Score=36.87 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=28.8
Q ss_pred cceeeEEEccCcccc-----CCCCCcccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNH-----IPQFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|++|++++|++.. +++ .+...++|+.|+|++|.++......+
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChHHHHHH
Confidence 368888888888773 211 12344688888888888876554433
No 105
>KOG3207|consensus
Probab=46.75 E-value=9.2 Score=37.79 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=33.7
Q ss_pred cceeeEEEccCccccCCCC-CcccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQF-PVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
..|.+|||++|++-..+.. .-..++.|+.|+++++.|..|..-.-
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence 5689999999999888743 34567788888888877776654433
No 106
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=45.11 E-value=8.1 Score=36.17 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred ceeeEEEccCccccCCC------CCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQ------FPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
++++|++.++.+...|+ ..+..+++|+.|+|++|.+....+..|...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 48888998887774333 245667899999999999987666666443
No 107
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=44.67 E-value=1.8e+02 Score=26.56 Aligned_cols=108 Identities=11% Similarity=0.127 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccccccc--cccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeeccCcCcccc
Q psy11830 218 TVFASQLSIFTLGMITLERWYSIKRALYANK--LTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGS 295 (387)
Q Consensus 218 ~~~~~~~Si~~L~~isidRy~aI~~P~~~~~--~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~~~~~~~ 295 (387)
......+--..+..+|++|+.---.|-.-+. .+.+.....+-.......+-.+.-............+.+ .+...
T Consensus 89 l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~---~~~~~ 165 (267)
T PF10325_consen 89 LYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE---IETFS 165 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh---hhHHH
Confidence 3444455567889999999999999974443 455544444443333333322111111000000000000 01111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 296 KIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 296 ~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
..+........ +-+.+.+..|+-|...+||.+.
T Consensus 166 ~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 166 YIYVIFYIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 22222222222 4455667889999999998775
No 108
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=39.46 E-value=39 Score=38.40 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=35.1
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
.++|+.|.+++|.++.+|... ...+|+.|+|++|+++.+.+.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccc
Confidence 356899999999999998764 468999999999999988654
No 109
>KOG0473|consensus
Probab=33.27 E-value=3.3 Score=37.58 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=29.5
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
-.+.||++.|++-++. ..|+-+..|+.|||+.|+|+.+|+
T Consensus 43 r~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~~~ 82 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFLPK 82 (326)
T ss_pred eeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhChh
Confidence 3467788888877774 456777788888888888877765
No 110
>KOG2739|consensus
Probab=33.25 E-value=25 Score=32.31 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=15.6
Q ss_pred ceeeEEEccCccccCCCC-CcccccceeEEEecCCccee
Q psy11830 7 SLLDMKIVRTGLNHIPQF-PVSNDLVMEVIFLGYNNIKI 44 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~n~i~~ 44 (387)
+|+.|.+++|+|..+... ....+.+|..|||++|..+.
T Consensus 92 ~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 92 NLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 344444444444443221 12223344444444444443
No 111
>KOG1859|consensus
Probab=32.69 E-value=18 Score=38.39 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=33.4
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
-..|..|||..|.+..+|..--.... |+.|.|.+|-++.+..
T Consensus 208 l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g 249 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG 249 (1096)
T ss_pred cccccccccccchhccccccchhhhh-heeeeecccHHHhhhh
Confidence 35678899999999999987777766 8888888888776643
No 112
>KOG2739|consensus
Probab=32.21 E-value=26 Score=32.21 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=28.2
Q ss_pred cceeeEEEccCccccCCCCCc--ccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV--SNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|..|.++.|+..-.-...+ -..++|++++|++|.|+.++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc
Confidence 467888898884433222222 23489999999999999744
No 113
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=31.09 E-value=4.7e+02 Score=24.89 Aligned_cols=108 Identities=9% Similarity=-0.040 Sum_probs=64.2
Q ss_pred hcccceeeeeeeccCCCc-hhHHHHHHHHHHHHHHHHHH--HHHHHHHhhccceeeccccCcccC--ccchhhhHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKS-VPRFLISHLAMADLCMAFYL--LLLAIKDLQSTEVYFNYAYDWQKG--YGCKVAGFVTVFA 221 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t-~~~~~i~nLavaDll~~~~~--~~~~~~~~~~~~~~~~~~~~w~~g--~~C~~~~~~~~~~ 221 (387)
+-|-+-+..+..+|+.+- .-.+++.--|+-|++.++.- .|..+.+.-+.- .....++|-.+ ..=+.....--..
T Consensus 20 ~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F-~~fi~dG~F~~~s~l~~~~ls~RCsf 98 (310)
T PF10319_consen 20 IVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAF-VVFISDGPFFEKSELGQHLLSIRCSF 98 (310)
T ss_pred HHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEE-EEEEcCCcCcCcchHHHHHHHHHHHH
Confidence 679988999888887753 44578899999999998874 444432221110 11122334333 1112222222333
Q ss_pred HHHHHHHHHHHHHHHHhheeccccccc-cccchhh
Q psy11830 222 SQLSIFTLGMITLERWYSIKRALYANK-LTIHRTT 255 (387)
Q Consensus 222 ~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~ 255 (387)
...|-..|-.==+.||+++++|...++ ..+....
T Consensus 99 Is~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~ 133 (310)
T PF10319_consen 99 ISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLI 133 (310)
T ss_pred HhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHH
Confidence 445556777778899999999976655 4344333
No 114
>PF13853 7tm_4: Olfactory receptor
Probab=28.46 E-value=20 Score=29.83 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy11830 305 FSSLVFAMICVCYFQIYSSLGNV 327 (387)
Q Consensus 305 ~~~iPl~ii~~~Y~~I~~~lr~~ 327 (387)
..+.|+.++.++|.+|++.+.|.
T Consensus 65 ~~~~~~~~Il~SY~~Il~avlki 87 (144)
T PF13853_consen 65 ILLGPLLLILFSYIRILRAVLKI 87 (144)
T ss_pred eEEEEeeccccceeEEEehhhcc
Confidence 34789999999999999877654
No 115
>KOG1909|consensus
Probab=28.39 E-value=28 Score=33.53 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=32.2
Q ss_pred ccceeeEEEccCccccCC----CCCcccccceeEEEecCCcceeeccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIP----QFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
+.+|.+..+..|+|..=. ...|..+++|+.|||+.|.++..-+.+.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 356778888888876422 2346777888888888888877665544
No 116
>PF03821 Mtp: Golgi 4-transmembrane spanning transporter; InterPro: IPR004687 LAPTM4 and 5 are lysosome-associated transmembrane proteins, found in mammals, insects and nematodes. ; GO: 0016021 integral to membrane
Probab=26.96 E-value=4.7e+02 Score=23.74 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccceee-ccccCcccCccc
Q psy11830 170 ISHLAMADLCMAFYLLLLAIKDLQSTEVYF-NYAYDWQKGYGC 211 (387)
Q Consensus 170 i~nLavaDll~~~~~~~~~~~~~~~~~~~~-~~~~~w~~g~~C 211 (387)
..+++..|++.++.............|.+. .+...|....+|
T Consensus 68 fl~~q~m~~~l~i~~l~~~i~~m~~Yga~~~~~~~~~llPFfc 110 (233)
T PF03821_consen 68 FLSLQNMDVLLAILTLMFSIIEMMAYGAIKRKRRPGWLLPFFC 110 (233)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHH
Confidence 455556666666544433332222222111 134566655445
No 117
>PRK15386 type III secretion protein GogB; Provisional
Probab=26.48 E-value=73 Score=31.70 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=26.3
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecC-Ccceeecc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGY-NNIKIIEG 47 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-n~i~~~~~ 47 (387)
.+.+..|++++++|+.+|+. -.+|+.|++++ |+++.+++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L----P~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL----PNELTEITIENCNNLTTLPG 90 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC----CCCCcEEEccCCCCcccCCc
Confidence 36788999999999988831 23577777765 55555543
No 118
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=23.98 E-value=23 Score=33.01 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=35.1
Q ss_pred ccceeeEEEccCccccC--CCCCcc---cccceeEEEecCCcceeeccccccC
Q psy11830 5 ANSLLDMKIVRTGLNHI--PQFPVS---NDLVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
|..|.++++..|+|..= ....|. -+++|+.|||+.|.++..-++....
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 56788999999988632 222333 3579999999999999887766543
No 119
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=22.47 E-value=32 Score=31.57 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=34.6
Q ss_pred hhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhh
Q psy11830 85 IFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129 (387)
Q Consensus 85 ~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~ 129 (387)
.++||...+....++++-++....+++.++++|.+....-.+-..
T Consensus 4 g~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~ 48 (257)
T PF10320_consen 4 GLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFML 48 (257)
T ss_pred EEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 468999888777777666677778999999999987766554443
No 120
>PRK15386 type III secretion protein GogB; Provisional
Probab=22.00 E-value=52 Score=32.67 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=26.0
Q ss_pred ccceeeEEEcc-CccccCCCCCcccccceeEEEecCC-cceeecc
Q psy11830 5 ANSLLDMKIVR-TGLNHIPQFPVSNDLVMEVIFLGYN-NIKIIEG 47 (387)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~n-~i~~~~~ 47 (387)
-.+|++|.+.+ +++..+|+... .+|+.|++++| +++.+++
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccccccc
Confidence 35677888876 66667765332 46777777777 6665554
No 121
>KOG2123|consensus
Probab=21.71 E-value=5.3 Score=37.25 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=36.6
Q ss_pred cceeeEEEccCccccCCCCCc-ccccceeEEEecCCcceeecccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV-SNDLVMEVIFLGYNNIKIIEGRAFN 51 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~n~i~~~~~~~f~ 51 (387)
..|.||.|.+|.|..+.|..+ .++++|+.|+|..|-=..-.+.-+.
T Consensus 63 trLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 63 TRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred HHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 357899999999999988765 5789999999999976555554443
Done!